| Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
| Cp1011 | - | - | - | - | - | - |   Ciclev10016354m | scaffold_2 | 25346439 | 25350875 |  C_unshiu_00087:mRNA_55.1 | C_unshiu_00087 | 398683 | 402763 | ZZ-type zinc finger-containing 3 | AGI-09 | 115.692 | |||||||||||
| Af1636 | - | - | - | - | - | - | Ciclev10016216m | scaffold_2 | 6611813 | 6619116 | C_unshiu_00072:mRNA_53.1 | C_unshiu_00072 | 416072 | 423443 | Zinc transporter ZTP29 | AGI-06 | 150.228 | |||||||||||
| Tf0210 | - | - | - | - | - | - | SI183 | Ciclev10004533m | scaffold_9 | 11993282 | 11999324 | C_unshiu_00926:mRNA_13.1 | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
| Tf0357 | - | - | - | - | - | - | SI018 | Ciclev10025390m | scaffold_7 | 2246732 | 2249558 | C_unshiu_01055:mRNA_7.1 | C_unshiu_01055 | 60614 | 63050 | Zinc finger protein JACKDAW | AGI-02 | 71.294 | ||||||||||
| Tf0412 | - | - | - | - | - | - | Ciclev10028306m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||||
| Tf0150 | AAvailable marker | O | O | - | O | O | O | SI262 | Ciclev10028292m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||
| Ov0316 | - | - | - | - | - | - | Ciclev10020995m | scaffold_3 | 3963024 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | JtR-05 | 31.749 | |||||||||||
| Af1633 | - | - | - | - | - | - | Ciclev10020304m | scaffold_3 | 3963024 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-07 | 67.201 | |||||||||||
| Tf0051 | - | - | - | - | - | - | SI027,SI214 | Ciclev10021952m | scaffold_3 | 3964036 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-05 | 25.590 | ||||||||||
| Fb0708 | - | - | - | - | - | - | Ciclev10005455m | scaffold_9 | 31237089 | 31243737 | C_unshiu_00003:mRNA_112.1 | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
| Tf0224 | OOthers | O | - | - | - | - | - | Ciclev10011741m | scaffold_6 | 7785328 | 7796808 | C_unshiu_00104:mRNA_54.1 | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
| Tf0022 | MDisagree by Marco analysis | O | - | - | - | - | - | SI116 | Ciclev10005681m | scaffold_9 | 31237089 | 31243866 | C_unshiu_00003:mRNA_112.1 | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 78.631 | |||||||||
| Tf0184 | AAvailable marker | O | - | - | - | O | O | Ciclev10019968m | scaffold_3 | 45393857 | 45398298 | C_unshiu_00546:mRNA_8.1 | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
| Tf0241 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10027798m | scaffold_8 | 22106872 | 22114471 | C_unshiu_00481:mRNA_18.1 | C_unshiu_00481 | 121975 | 128680 | Zinc finger CCCH domain-containing protein 24 | AGI-08 | 27.618 | ||||||||||
| Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | Ciclev10022558m | scaffold_3 | 6409311 | 6411254 | C_unshiu_00443:mRNA_7.1 | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
| Al0411 | AAvailable marker | O | - | - | - | O | O | Ciclev10029439m | scaffold_8 | 19760077 | 19761961 | C_unshiu_00011:mRNA_19.2 | C_unshiu_00011 | 188649 | 189649 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-08 | 40.857 | ||||||||||
| Bf0204 | - | - | - | - | - | - | SI326 | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | RP-02.2 | 9.835 | ||||||||||
| Gn0068 | - | - | - | - | - | - | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | AGI-02 | 68.446 | RP-02.2 | 9.814 | |||||||||
| Gn0068.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | ||||||||||||
| Cp1925 | AAvailable marker | - | - | - | - | O | O | Ciclev10005182m | scaffold_9 | 3115971 | 3120271 | C_unshiu_00051:mRNA_29.1 | C_unshiu_00051 | 224928 | 229203 | YjeF family domain-containing protein | AGI-03 | 24.457 | ||||||||||
| If0002 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10016861m | scaffold_2 | 35546692 | 35549207 | C_unshiu_01497:mRNA_3.1 | C_unshiu_01497 | 10215 | 14601 | YggS family pyridoxal phosphate enzyme | AGI-06 | 19.002 | KmG-06 | 62.901 | ||||||||
| Al0028 | - | - | - | - | - | - | Ciclev10016123m | scaffold_2 | 11604956 | 11606340 | C_unshiu_00957:mRNA_11.1 | C_unshiu_00957 | 38508 | 39910 | Xyloglucan endotransglucosylase/hydrolase protein A | RP-06.1 | 28.573 | |||||||||||
| Lp0135 | - | - | - | - | - | - | Ciclev10002870m | scaffold_5 | 39412819 | 39414334 | C_unshiu_00457:mRNA_3.1 | C_unshiu_00457 | 27521 | 28982 | Xylem serinease 1-like protein | JtR-05 | 41.854 | |||||||||||
| Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | Ciclev10007493m | scaffold_1 | 23776796 | 23782088 | C_unshiu_00080:mRNA_56.1 | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
| Tf0362 | - | - | - | - | - | - | SI062 | Ciclev10026199m | scaffold_7 | 224443 | 227133 | C_unshiu_02579:mRNA_3.1 | C_unshiu_02579 | 13228 | 15002 | WUSCHEL-related homeobox 13 | ||||||||||||
| Bf0205 | O | - | - | - | - | - | SI236 | Ciclev10025925m | scaffold_7 | 3541924 | 3543863 | C_unshiu_00301:mRNA_11.1 | C_unshiu_00301 | 55570 | 57462 | WRKY | ||||||||||||
| Tf0077 | O | - | - | - | - | - | SI135 | Ciclev10008135m | scaffold_1 | 28433972 | 28437921 | C_unshiu_00590:mRNA_15.1 | C_unshiu_00590 | 86430 | 90131 | WRKY | AGI-01 | 34.814 | ||||||||||
| Cp1815 | OOthers | - | - | - | - | - | - | Ciclev10022373m | scaffold_3 | 8256398 | 8257886 | C_unshiu_00154:mRNA_28.1 | C_unshiu_00154 | 274299 | 275412 | Wiskott-Aldrich syndrome protein family member 2 | AGI-05 | 51.501 | ||||||||||
| Fb0233 | O | - | - | - | - | - | SI025,SI079,SI169 | Ciclev10025557m | scaffold_7 | 6535522 | 6540965 | C_unshiu_00437:mRNA_15.1 | C_unshiu_00437 | 131524 | 136642 | WD-40 repeat-containing protein MSI4 | AGI-02 | 47.382 | ||||||||||
| Tf0049 | - | - | - | - | - | - | SI328 | Ciclev10008919m | scaffold_1 | 24273993 | 24277800 | C_unshiu_00047:mRNA_33.1 | C_unshiu_00047 | 212549 | 221653 | WD domain protein-like | AGI-01 | 26.841 | ||||||||||
| Cp0106 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10020606m | scaffold_3 | 11867765 | 11869679 | C_unshiu_00741:mRNA_6.1 | C_unshiu_00741 | 44989 | 55203 | Wall associated kinase-like 6, putative | AGI-03 | 40.566 | ||||||||||
| Gn0063 | OOthers | O | - | - | - | - | - | Ciclev10019925m | scaffold_3 | 40937725 | 40942854 | C_unshiu_00735:mRNA_14.1 | C_unshiu_00735 | 99621 | 103733 | Violaxanthin de-epoxidase | AGI-08 | 60.140 | KmG-07 | 31.750 | ||||||||
| Al0638 | OOthers | O | - | - | - | - | - | Ciclev10027380m | scaffold_7 | 8662041 | 8665543 | C_unshiu_00221:mRNA_2.1 | C_unshiu_00221 | 6658 | 10157 | VHS domain-containing protein | KmG-07 | 23.435 | JtR-07 | 17.224 | NAT-07 | 24.049 | ||||||
| Al0633 | OOthers | O | - | - | - | - | O | SI123 | Ciclev10015092m | scaffold_2 | 33837403 | 33842156 | C_unshiu_00002:mRNA_126.1 | C_unshiu_00002 | 901824 | 911260 | Vascular plant one zinc finger protein isoform 1 | KmG-06 | 55.857 | JtR-06S | 59.645 | NAT-06S | 51.106 | RP-06.2 | 27.837 | |||
| Bf0003 | ULess informative for main cultivars | O | - | - | - | - | - | SI354 | Ciclev10011720m | scaffold_6 | 16246773 | 16250769 | C_unshiu_00390:mRNA_6.1 | C_unshiu_00390 | 75799 | 78947 | Vacuolar cation/proton exchanger 3 | RP-04 | 10.253 | |||||||||
| Gn0018 | - | - | - | - | - | - | Ciclev10030969m | scaffold_4 | 5053540 | 5061039 | C_unshiu_00616:mRNA_15.1 | C_unshiu_00616 | 99349 | 106841 | V-type H+-transporting ATPase subunit A | AGI-08 | 84.345 | KmG-02 | 16.986 | |||||||||
| Af1037 | - | - | - | - | - | - | Ciclev10032461m | scaffold_4 | 1969590 | 1972842 | C_unshiu_00058:mRNA_65.1 | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
| Bf0109 | - | - | - | - | - | - | SI233 | Ciclev10032461m | scaffold_4 | 1970129 | 1972842 | C_unshiu_00058:mRNA_65.1 | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | RP-07 | 51.394 | ||||||||||
| Tf0373 | - | - | - | - | - | - | SI088 | Ciclev10011502m | scaffold_6 | 21229813 | 21233537 | C_unshiu_00037:mRNA_60.1 | C_unshiu_00037 | 387538 | 391239 | Uridylate kinase, putative | AGI-04 | 61.716 | ||||||||||
| Tf0294 | AAvailable marker | O | - | - | - | O | O | Ciclev10021365m | scaffold_3 | 4794701 | 4799518 | C_unshiu_00135:mRNA_58.2 | C_unshiu_00135 | 398519 | 403121 | Ureidoglycine aminohydrolase isoform 1 | AGI-05 | 27.135 | ||||||||||
| Cp1697 | AAvailable marker | - | - | - | - | O | O | Ciclev10028645m | scaffold_8 | 966124 | 968846 | C_unshiu_00041:mRNA_89.1 | C_unshiu_00041 | 555334 | 558046 | Urease accessory protein UreH | AGI-02 | 73.770 | ||||||||||
| Cp1923 | OOthers | - | - | - | - | - | - | Ciclev10005293m | scaffold_9 | 2946301 | 2950297 | C_unshiu_00097:mRNA_22.1 | C_unshiu_00097 | 195825 | 199499 | UPF0613 protein PB24D3.06c | AGI-03 | 22.454 | ||||||||||
| Cp0190 | OOthers | - | - | - | - | - | - | Ciclev10023646m | scaffold_3 | 18648426 | 18650443 | C_unshiu_00618:mRNA_5.1 | C_unshiu_00618 | 20273 | 22297 | UPF0426 protein, chloroplastic | AGI-06 | 27.617 | ||||||||||
| Cp0671 | AAvailable marker | - | - | - | - | O | O | Ciclev10009489m | scaffold_1 | 28353948 | 28356507 | C_unshiu_00590:mRNA_26.1 | C_unshiu_00590 | 165626 | 168046 | UPF0133 protein | AGI-01 | 36.113 | ||||||||||
| Cp1308 | AAvailable marker | - | O | - | - | O | O | Ciclev10011420m | scaffold_6 | 6329421 | 6335005 | C_unshiu_00147:mRNA_29.1 | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
| Lp0140 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016399m | scaffold_2 | 32629908 | 32634194 | C_unshiu_00070:mRNA_52.1 | C_unshiu_00070 | 393864 | 397918 | Universal stress protein A-like protein | KmG-02 | 12.229 | JtR-02 | 2.765 | RP-02 | 8.172 | ||||||
| If0206 | DDominant marker | - | - | - | - | - | - | SI208 | Ciclev10012955m | scaffold_6 | 15192652 | 15194091 | C_unshiu_00034:mRNA_78.1 | C_unshiu_00034 | 662958 | 664402 | Universal stress protein A-like protein | |||||||||||
| Af1495 | - | - | - | - | - | - | Ciclev10032113m | scaffold_4 | 22523092 | 22528307 | C_unshiu_00004:mRNA_77.1 | C_unshiu_00004 | 548746 | 553542 | UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3 | AGI-07 | 69.544 | |||||||||||
| Wy0015 | O | - | - | - | - | - | SI041 | Ciclev10028465m | scaffold_8 | 13101257 | 13103161 | C_unshiu_02878:mRNA_1.1 | C_unshiu_02878 | 9199 | 10715 | UDP-glycosyltransferase 73C5 | AGI-08 | 56.724 | ||||||||||
| Ov0408 | AAvailable marker | - | - | - | - | - | O | Ciclev10011522m | scaffold_6 | 18491789 | 18493623 | C_unshiu_00248:mRNA_30.1 | C_unshiu_00248 | 247183 | 248778 | UDP-glycosyltransferase 71C4 | KmG-04 | 50.902 | RP-04 | 23.745 | ||||||||
| Wy0016 | - | - | - | - | - | - | SI068 | Ciclev10011522m | scaffold_6 | 18491789 | 18493623 | C_unshiu_01309:mRNA_6.1 | C_unshiu_01309 | 21942 | 23382 | UDP-glycosyltransferase 71B1 | KmG-04 | 47.990 | ||||||||||
| Al0612 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10001524m | scaffold_5 | 29481817 | 29485113 | C_unshiu_01370:mRNA_2.1 | C_unshiu_01370 | 27014 | 30283 | UDP-glucuronic acid decarboxylase 1 | KmG-09 | 28.332 | JtR-09S | 32.873 | ||||||||
| Af1432 | - | - | - | - | - | - | Ciclev10032069m | scaffold_4 | 23666784 | 23669594 | C_unshiu_00001:mRNA_103.1 | C_unshiu_00001 | 659252 | 662036 | UDP-galactose/UDP-glucose transporter 5B | AGI-07 | 72.828 | |||||||||||
| Tf0205 | OOthers | O | - | - | - | - | - | SI274 | Ciclev10005062m | scaffold_9 | 16383851 | 16393557 | C_unshiu_00094:mRNA_29.1 | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
| Tf0125 | - | - | - | - | - | - | Ciclev10025501m | scaffold_7 | 16249523 | 16255343 | C_unshiu_01042:mRNA_11.1 | C_unshiu_01042 | 86577 | 91963 | Ubiquitin-specific protease family C19 protein | AGI-02 | 21.337 | |||||||||||
| Fb0372 | - | - | - | - | - | - | SI343,SI052 | Ciclev10002666m | scaffold_5 | 35123213 | 35124730 | C_unshiu_00042:mRNA_34.1 | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
| Al0617 | AAvailable marker | O | - | - | - | O | O | Ciclev10033546m | scaffold_4 | 1021179 | 1023023 | C_unshiu_00012:mRNA_24.1 | C_unshiu_00012 | 188654 | 191971 | Ubiquitin-binding WIYLD domain protein | AGI-07 | 8.553 | JtR-07 | 74.121 | ||||||||
| Ov0319 | - | - | - | - | - | - | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | KmG-032 | 19.158 | |||||||||||
| Af1094 | - | - | - | - | - | - | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | AGI-01 | 30.175 | |||||||||||
| Cp1998 | AAvailable marker | - | - | - | - | - | O | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | ||||||||||||
| Tf0026 | O | - | - | - | - | - | SI111,SI288 | Ciclev10025369m | scaffold_7 | 285299 | 292550 | C_unshiu_00312:mRNA_28.1 | C_unshiu_00312 | 151229 | 158232 | Ubiquilin | AGI-02 | 78.531 | ||||||||||
| Fb0343 | AAvailable marker | O | - | - | - | - | O | Ciclev10033061m | scaffold_4 | 25059045 | 25061910 | C_unshiu_00001:mRNA_322.1 | C_unshiu_00001 | 2042062 | 2044301 | U6 snRNA-associated Sm-like protein LSm7 | KmG-07 | |||||||||||
| Bf1243 | - | - | - | - | - | - | Ciclev10032276m | scaffold_4 | 24657015 | 24660141 | C_unshiu_00001:mRNA_262.1 | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
| Ov0505 | AAvailable marker | - | - | - | - | - | O | Ciclev10031252m | scaffold_4 | 16626338 | 16629094 | C_unshiu_00250:mRNA_14.1 | C_unshiu_00250 | 82573 | 84397 | Tyrosine decarboxylase | KmG-07 | 53.887 | JtR-07 | 48.672 | NAT-07 | 3.814 | ||||||
| Wy0029 | - | - | - | - | - | - | Ciclev10012640m | scaffold_6 | 21145703 | 21148279 | C_unshiu_00052:mRNA_26.1 | C_unshiu_00052 | 161014 | 162179 | Type II peroxiredoxin | AGI-04 | ||||||||||||
| Tf0087 | - | - | - | - | - | - | SI166,SI271,SI287 | Ciclev10031120m | scaffold_4 | 11412331 | 11417624 | C_unshiu_00019:mRNA_18.1 | C_unshiu_00019 | 190344 | 195992 | Two-component response regulator-like APRR2 | AGI-07 | 35.897 | ||||||||||
| Tf0165 | AAvailable marker | O | - | - | - | O | O | Ciclev10031793m | scaffold_4 | 19605473 | 19608059 | C_unshiu_00099:mRNA_19.1 | C_unshiu_00099 | 154500 | 156794 | Two-component response regulator ARR18 | AGI-07 | 55.503 | ||||||||||
| Fb0231 | - | - | - | - | - | - | Ciclev10004999m | scaffold_9 | 1169260 | 1172055 | C_unshiu_00007:mRNA_2.1 | C_unshiu_00007 | 6589 | 14596 | Two-component response regulator ARR12-like protein | RP-03 | 1.143 | |||||||||||
| Af1638 | - | - | - | - | - | - | Ciclev10004755m | scaffold_9 | 28984972 | 28989373 | C_unshiu_00045:mRNA_79.1 | C_unshiu_00045 | 556440 | 562091 | Tubulin | AGI-03 | 34.554 | |||||||||||
| Ks9011 | AAvailable marker | - | - | - | - | - | O | Ciclev10004755m | scaffold_9 | 28984972 | 28989373 | C_unshiu_00045:mRNA_79.1 | C_unshiu_00045 | 556440 | 562091 | Tubulin | JtR-032 | |||||||||||
| Ov0111 | AAvailable marker | - | - | - | - | O | O | Ciclev10000069m | scaffold_5 | 8532280 | 8539677 | C_unshiu_00033:mRNA_6.1 | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
| Cp2026 | AAvailable marker | - | - | - | - | O | O | Ciclev10011534m | scaffold_6 | 23506491 | 23509585 | C_unshiu_00098:mRNA_44.1 | C_unshiu_00098 | 286004 | 289150 | Tryptophan synthase, beta subunit | AGI-04 | 43.239 | ||||||||||
| Fb0104 | OOthers | O | - | - | - | - | - | Ciclev10016358m | scaffold_2 | 35758546 | 35760859 | C_unshiu_00337:mRNA_24.1 | C_unshiu_00337 | 135198 | 136991 | Tropinone reductase like | AGI-06 | 16.857 | RP-06.2 | 16.271 | ||||||||
| Al0501 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10012221m | scaffold_6 | 14625884 | 14628443 | C_unshiu_00032:mRNA_48.1 | C_unshiu_00032 | 462609 | 490932 | Tropinone reductase I | ||||||||||||
| Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | Ciclev10015338m | scaffold_2 | 290799 | 294122 | C_unshiu_00109:mRNA_36.1 | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
| Bf0402 | - | - | - | - | - | - | Ciclev10020232m | scaffold_3 | 9137249 | 9144663 | C_unshiu_00058:mRNA_19.1 | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
| If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | Ciclev10001680m | scaffold_5 | 40628244 | 40630241 | C_unshiu_00234:mRNA_9.1 | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
| Tf0360 | - | - | - | - | - | - | SI112 | Ciclev10000627m | scaffold_5 | 38669123 | 38672110 | C_unshiu_00430:mRNA_12.1 | C_unshiu_00430 | 98615 | 101120 | Trihelix transcription factor GT-2 | AGI-09 | 43.140 | ||||||||||
| Tf0227 | AAvailable marker | O | - | - | - | O | O | Ciclev10031750m | scaffold_4 | 21666061 | 21671693 | C_unshiu_00010:mRNA_30.1 | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
| Cp2158 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10007944m | scaffold_1 | 22847397 | 22852110 | C_unshiu_00103:mRNA_47.1 | C_unshiu_00103 | 254015 | 258614 | Trigger factor type chaperone family protein | AGI-01 | 24.422 | ||||||||||
| Al0627 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10025602m | scaffold_7 | 128539 | 131642 | C_unshiu_00706:mRNA_3.1 | C_unshiu_00706 | 16590 | 18098 | Trigalactosyldiacylglycerol 1 isoform 1 | AGI-02 | 78.531 | ||||||||||
| Cp0257 | - | - | - | - | - | - | Ciclev10001536m | scaffold_5 | 36526073 | 36528589 | C_unshiu_00657:mRNA_4.1 | C_unshiu_00657 | 52199 | 54744 | Trehalose-phosphatase | AGI-09 | 48.390 | |||||||||||
| Tf0275 | AAvailable marker | O | - | - | - | O | O | Ciclev10006256m | scaffold_9 | 955176 | 957425 | C_unshiu_00249:mRNA_31.1 | C_unshiu_00249 | 191274 | 194861 | Transposon protein, putative, Mutator sub-class | AGI-03 | 11.501 | ||||||||||
| Em0004 | Fb1532.em | - | - | - | - | - | - | Ciclev10015815m | scaffold_2 | 11585699 | 11587422 | C_unshiu_01211:mRNA_9.1 | C_unshiu_01211 | 67756 | 69149 | Transparent testa glabra 1 | AGI-02 | 11.835 | ||||||||||
| Mf0095 | OOthers | O | - | - | - | - | - | SI290 | Ciclev10005778m | scaffold_9 | 21216748 | 21221111 | C_unshiu_00160:mRNA_34.1 | C_unshiu_00160 | 290257 | 294371 | Transmembrane proteins 14C, putative isoform 1 | KmG-032 | JtR-031 | 11.958 | RP-03 | 43.323 | ||||||
| Af1415 | - | - | - | - | - | - | Ciclev10005717m | scaffold_9 | 2603134 | 2605405 | C_unshiu_00366:mRNA_20.1 | C_unshiu_00366 | 130993 | 132913 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-03 | 16.667 | |||||||||||
| Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021936m | scaffold_3 | 44202968 | 44205663 | C_unshiu_00217:mRNA_35.1 | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
| Tf0449 | OOthers | O | - | - | - | - | - | Ciclev10009165m | scaffold_1 | 28254307 | 28257305 | C_unshiu_01997:mRNA_4.1 | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
| Lp0143 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10019139m | scaffold_3 | 6076949 | 6080875 | C_unshiu_00159:mRNA_40.1 | C_unshiu_00159 | 339926 | 343475 | Translation elongation factor G | AGI-05 | 45.297 | JtR-05 | 18.056 | ||||||||
| Tf0085 | - | - | - | - | - | - | SI094,SI211 | Ciclev10012088m | scaffold_6 | 2067586 | 2073007 | C_unshiu_00176:mRNA_13.1 | C_unshiu_00176 | 89975 | 97731 | Transcription factor-like protein DPB | AGI-08 | 96.807 | ||||||||||
| Tf0214 | - | - | - | - | - | - | SI020 | Ciclev10020053m | scaffold_3 | 50133837 | 50139049 | C_unshiu_00014:mRNA_67.1 | C_unshiu_00014 | 458017 | 462942 | Transcription factor UNE10 | ||||||||||||
| Tf0069 | - | - | - | - | - | - | SI199 | Ciclev10001715m | scaffold_5 | 38566192 | 38571337 | C_unshiu_00183:mRNA_2.1 | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
| Tf0096 | O | - | - | - | - | - | Ciclev10028804m | scaffold_8 | 21369373 | 21370728 | C_unshiu_00784:mRNA_1.1 | C_unshiu_00784 | 297 | 1652 | Transcription factor RAX3 | AGI-08 | 34.042 | |||||||||||
| Tf0268 | AAvailable marker | O | - | - | - | O | O | Ciclev10021157m | scaffold_3 | 10140904 | 10142752 | C_unshiu_00149:mRNA_29.1 | C_unshiu_00149 | 326478 | 328059 | Transcription factor MYB21 | AGI-05 | 43.800 | ||||||||||
| Tf0130 | - | - | - | - | - | - | Ciclev10001027m | scaffold_5 | 19740133 | 19745806 | C_unshiu_00050:mRNA_15.1 | C_unshiu_00050 | 195528 | 200204 | Transcription factor GAMYB | AGI-09 | 103.217 | |||||||||||
| Tf0001.2 | AAvailable marker | O | O | O | - | O | O | Ciclev10020248m | scaffold_3 | 8647529 | 8652282 | C_unshiu_00580:mRNA_10.1 | C_unshiu_00580 | 75118 | 81473 | Transcription factor BIM1 | AGI-05 | 41.893 | ||||||||||
| Tf0328 | - | - | - | - | - | - | SI039,SI180 | Ciclev10021606m | scaffold_3 | 2530708 | 2533942 | C_unshiu_00509:mRNA_27.1 | C_unshiu_00509 | 178211 | 181426 | Transcription factor bHLH79 | ||||||||||||
| Tf0090 | AAvailable marker | O | - | - | - | - | O | Ciclev10031135m | scaffold_4 | 16519046 | 16521918 | C_unshiu_00086:mRNA_45.1 | C_unshiu_00086 | 374812 | 377677 | Transcription factor bHLH62 | ||||||||||||
| Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
| Tf0396 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI035 | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | |||||||||||
| Tf0423 | - | - | - | - | - | - | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 50.361 | |||||||||||
| Tf0317 | - | - | - | - | - | - | SI145 | Ciclev10021941m | scaffold_3 | 2106810 | 2109266 | C_unshiu_00490:mRNA_19.1 | C_unshiu_00490 | 159122 | 161521 | Transcription factor bHLH47 | ||||||||||||
| Tf0257 | - | - | - | - | - | - | SI049 | Ciclev10019816m | scaffold_3 | 43654587 | 43656842 | C_unshiu_00805:mRNA_2.1 | C_unshiu_00805 | 5667 | 6759 | Transcription factor bHLH3 | ||||||||||||
| Tf0318 | AAvailable marker | O | O | O | - | O | O | Ciclev10031873m | scaffold_4 | 13751433 | 13754767 | C_unshiu_00240:mRNA_28.2 | C_unshiu_00240 | 282002 | 285335 | Transcription factor bHLH137 | AGI-07 | 37.467 | ||||||||||
| Tf0144 | - | - | - | - | - | - | SI125,SI189,SI192 | Ciclev10028782m | scaffold_8 | 8009000 | 8012045 | C_unshiu_00682:mRNA_12.1 | C_unshiu_00682 | 86334 | 89311 | Transcription factor bHLH121 | AGI-08 | 56.439 | ||||||||||
| Tf0062 | Bno homozygous cultivar with minor allele | O | - | - | O | - | - | SI223 | Ciclev10012377m | scaffold_6 | 11826472 | 11830875 | C_unshiu_00207:mRNA_24.2 | C_unshiu_00207 | 252955 | 255240 | Transcription factor ASG4 | AGI-08 | 93.624 | |||||||||
| Tf0354 | - | - | - | - | - | - | SI070 | Ciclev10021202m | scaffold_3 | 48704416 | 48708817 | C_unshiu_00018:mRNA_33.1 | C_unshiu_00018 | 219801 | 223933 | Transcription factor ASG4 | ||||||||||||
| Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
| Ov0302 | Ov0301.2 | - | - | - | - | - | - | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
| Lp0040 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10026107m | scaffold_7 | 3674156 | 3676384 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | KmG-02 | 52.181 | JtR-02 | 25.334 | ||||||||
| Tf0259 | AAvailable marker | O | - | - | - | O | O | Ciclev10026107m | scaffold_7 | 3674156 | 3676384 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-02 | 67.666 | ||||||||||
| Tf0014.2 | - | - | - | - | - | - | Ciclev10030185m | scaffold_8 | 24976315 | 24979483 | C_unshiu_00271:mRNA_9.1 | C_unshiu_00271 | 56325 | 61820 | Transcription factor | AGI-08 | ||||||||||||
| Tf0016 | - | - | - | - | - | - | SI345 | Ciclev10001979m | scaffold_5 | 39839984 | 39841860 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-09 | 42.158 | ||||||||||
| Tf0017 | - | - | - | - | - | - | SI285 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | AGI-05 | 28.617 | ||||||||||
| Tf0067 | OOthers | O | - | - | - | - | - | SI033,SI187 | Ciclev10025950m | scaffold_7 | 8438702 | 8442381 | C_unshiu_00290:mRNA_9.1 | C_unshiu_00290 | 74194 | 77624 | Transcription factor | AGI-02 | 5.104 | |||||||||
| Ov0006 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 25.587 | JtR-08 | 27.669 | ||||||||
| Tf0084 | - | - | - | - | - | - | Ciclev10000121m | scaffold_5 | 38288047 | 38296128 | C_unshiu_00183:mRNA_40.1 | C_unshiu_00183 | 305878 | 313881 | Transcription elongation factor SPT5 | AGI-09 | 44.096 | |||||||||||
| Cp0073 | O | - | - | - | - | - | Ciclev10020501m | scaffold_3 | 5972288 | 5978062 | C_unshiu_00997:mRNA_9.1 | C_unshiu_00997 | 69257 | 75059 | Transaldolase | AGI-05 | 34.924 | |||||||||||
| Af1060 | O | - | - | - | - | - | Ciclev10000400m | scaffold_5 | 42918371 | 42923480 | C_unshiu_00370:mRNA_16.1 | C_unshiu_00370 | 75283 | 79772 | Tonoplast monosaccharide transporter 2 | AGI-09 | 23.647 | |||||||||||
| Af1208 | - | - | - | - | - | - | Ciclev10029134m | scaffold_8 | 23036291 | 23037524 | C_unshiu_02220:mRNA_1.1 | C_unshiu_02220 | 11982 | 13216 | Tonoplast intrinsic protein | AGI-08 | 17.057 | |||||||||||
| Gn0073 | AAvailable marker | O | O | - | - | O | O | Ciclev10014770m | scaffold_2 | 35895662 | 35898841 | C_unshiu_00077:mRNA_4.1 | C_unshiu_00077 | 30410 | 32987 | Tonoplast dicarboxylate transporter | AGI-06 | 12.402 | ||||||||||
| Af1187 | - | - | - | - | - | - | Ciclev10031748m | scaffold_4 | 24996017 | 25000652 | C_unshiu_00001:mRNA_314.1 | C_unshiu_00001 | 1991693 | 1996431 | Tocopherol O-methyltransferase | AGI-07 | 85.027 | |||||||||||
| Tf0309 | - | - | - | - | - | - | SI190 | Ciclev10020466m | scaffold_3 | 45314016 | 45316651 | C_unshiu_00546:mRNA_23.1 | C_unshiu_00546 | 158416 | 160829 | TLP domain class transcription factor | AGI-05 | 57.948 | ||||||||||
| Al0619 | - | - | - | - | - | - | Ciclev10005142m | scaffold_9 | 2234066 | 2238313 | C_unshiu_00311:mRNA_12.1 | C_unshiu_00311 | 55933 | 60057 | TLP domain class transcription factor | AGI-01 | 57.863 | KmG-01 | 39.698 | |||||||||
| Cp1477 | - | - | - | - | - | - | Ciclev10001770m | scaffold_5 | 36095844 | 36099890 | C_unshiu_01173:mRNA_9.1 | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
| Af1623 | - | - | - | - | - | - | Ciclev10032683m | scaffold_4 | 612480 | 615318 | C_unshiu_01079:mRNA_2.2 | C_unshiu_01079 | 3136 | 5814 | Thylakoid lumenal 15 kDa protein 1, chloroplastic | AGI-07 | 7.907 | |||||||||||
| Cp0781 | AAvailable marker | - | - | - | - | O | O | Ciclev10021469m | scaffold_3 | 41043663 | 41046480 | C_unshiu_00305:mRNA_28.1 | C_unshiu_00305 | 251599 | 254198 | Thioredoxin-like 7 family protein | AGI-05 | 50.294 | ||||||||||
| Wy0023 | - | - | - | - | - | - | SI037 | Ciclev10025834m | scaffold_7 | 70855 | 73880 | C_unshiu_00706:mRNA_12.1 | C_unshiu_00706 | 76103 | 78923 | Thioredoxin-disulfide reductase | ||||||||||||
| Af1619 | - | - | - | - | - | - | Ciclev10026784m | scaffold_7 | 1608634 | 1610659 | C_unshiu_00209:mRNA_18.2 | C_unshiu_00209 | 147009 | 148975 | Thioredoxin h | AGI-02 | 73.759 | |||||||||||
| Cp0973 | OOthers | - | - | - | - | - | - | Ciclev10013409m | scaffold_6 | 8193393 | 8195764 | C_unshiu_00407:mRNA_4.1 | C_unshiu_00407 | 55425 | 57717 | Thioredoxin F-type, chloroplastic | ||||||||||||
| Cp1716 | AAvailable marker | - | - | - | - | O | O | Ciclev10026303m | scaffold_7 | 2607670 | 2609433 | C_unshiu_00025:mRNA_77.1 | C_unshiu_00025 | 553145 | 554831 | Thiol disulfide interchange protein | AGI-02 | 70.068 | ||||||||||
| Bf0026 | - | - | - | - | - | - | Ciclev10008765m | scaffold_1 | 21082902 | 21086082 | C_unshiu_00487:mRNA_12.1 | C_unshiu_00487 | 113166 | 115416 | Thiazole biosynthetic enzyme | AGI-01 | 43.164 | RP-01 | 56.137 | |||||||||
| Cp0100 | O | - | - | - | - | - | Ciclev10024866m | scaffold_7 | 10471136 | 10474241 | C_unshiu_00924:mRNA_4.1 | C_unshiu_00924 | 50269 | 52902 | Tetratricopeptide repeat-like superfamily protein | AGI-02 | 14.111 | |||||||||||
| Al0624 | - | - | - | - | - | - | Ciclev10021584m | scaffold_3 | 42647413 | 42652459 | C_unshiu_01228:mRNA_6.1 | C_unshiu_01228 | 43617 | 48513 | Tetraspanin family protein | AGI-05 | 29.354 | |||||||||||
| Tf0074 | O | - | - | - | - | - | Ciclev10005366m | scaffold_9 | 28444512 | 28446074 | C_unshiu_00045:mRNA_7.1 | C_unshiu_00045 | 62608 | 63842 | TCP family transcription factor | AGI-03 | 37.816 | |||||||||||
| Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | Ciclev10030472m | scaffold_4 | 17057658 | 17074755 | C_unshiu_00225:mRNA_13.1 | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
| Bf0232 | - | - | - | - | - | - | Ciclev10031191m | scaffold_4 | 21861774 | 21865635 | C_unshiu_01346:mRNA_3.1 | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
| Cp2118 | - | - | - | - | - | - | Ciclev10032406m | scaffold_4 | 14565456 | 14568265 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 37.152 | |||||||||||
| Bf0027 | - | - | - | - | - | - | SI372 | Ciclev10032632m | scaffold_4 | 14565456 | 14567860 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 40.515 | ||||||||||
| Bf0411 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028317m | scaffold_8 | 21869065 | 21874083 | C_unshiu_00500:mRNA_13.1 | C_unshiu_00500 | 128482 | 133656 | Sulfotransferase | ||||||||||||
| Ov0112 | OOthers | - | - | - | - | - | - | Ciclev10021050m | scaffold_3 | 33252463 | 33253730 | C_unshiu_01571:mRNA_4.1 | C_unshiu_01571 | 43836 | 45084 | Sulfotransferase | KmG-05S | 42.335 | RP-05 | 53.076 | ||||||||
| Bf0123 | - | - | - | - | - | - | SI141 | Ciclev10011473m | scaffold_6 | 15803864 | 15809998 | C_unshiu_00284:mRNA_13.1 | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
| Gn0011 | - | - | - | - | - | - | Ciclev10007488m | scaffold_1 | 24814539 | 24819264 | C_unshiu_00341:mRNA_12.1 | C_unshiu_00341 | 85182 | 89905 | Sucrose synthase | KmG-01 | 21.459 | |||||||||||
| Gn0012 | - | - | - | - | - | - | Ciclev10018889m | scaffold_3 | 46011238 | 46017249 | C_unshiu_00139:mRNA_16.1 | C_unshiu_00139 | 135708 | 141900 | Sucrose synthase | KmG-05S | 78.527 | |||||||||||
| Gn0017 | - | - | - | - | - | - | Ciclev10007311m | scaffold_1 | 25880824 | 25887976 | C_unshiu_00005:mRNA_103.1 | C_unshiu_00005 | 841899 | 847089 | Sucrose phosphate synthase | AGI-01 | 30.293 | KmG-01 | 17.862 | |||||||||
| Al0422 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10013176m | scaffold_6 | 14495473 | 14496662 | C_unshiu_00032:mRNA_34.1 | C_unshiu_00032 | 369423 | 370581 | Subtilisin inhibitor 1, putative | AGI-08 | 93.695 | ||||||||||
| Vt0001 | AAvailable marker | - | - | - | - | O | O | Ciclev10014290m | scaffold_2 | 35624935 | 35628855 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
| Vt0011 | AAvailable marker | - | - | - | - | O | O | Ciclev10021162m | scaffold_3 | 12984411 | 12986574 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
| Af1508 | - | - | - | - | - | - | Ciclev10011580m | scaffold_6 | 21983044 | 21991500 | C_unshiu_00079:mRNA_48.1 | C_unshiu_00079 | 328854 | 336213 | Stomatal closure-related actin-binding protein 3 | AGI-04 | 1.342 | |||||||||||
| Al0513 | OOthers | - | - | - | - | - | - | Ciclev10009222m | scaffold_1 | 8046181 | 8049306 | C_unshiu_00191:mRNA_21.1 | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
| Ov0015 | OOthers | O | - | - | - | - | - | SI304 | Ciclev10026223m | scaffold_7 | 8255046 | 8256442 | C_unshiu_02827:mRNA_2.1 | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
| Cp1585 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | ||||||||||||
| Tf0083 | - | - | - | - | - | - | SI129 | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Tf0420 | AAvailable marker | O | O | O | - | O | O | Ciclev10022018m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Gn0047 | - | - | - | - | - | - | Ciclev10011938m | scaffold_6 | 18741181 | 18744166 | C_unshiu_00139:mRNA_23.1 | C_unshiu_00139 | 204645 | 207518 | Squamosa promoter-binding-like protein 9 | KmG-04 | 48.092 | |||||||||||
| Tf0267 | AAvailable marker | O | - | - | - | O | O | Ciclev10031834m | scaffold_4 | 12571526 | 12575185 | C_unshiu_00847:mRNA_8.1 | C_unshiu_00847 | 48651 | 52296 | Squamosa promoter-binding-like protein 13 | AGI-07 | 37.800 | ||||||||||
| Tf0140 | - | - | - | - | - | - | Ciclev10004457m | scaffold_9 | 225971 | 232459 | C_unshiu_00007:mRNA_144.1 | C_unshiu_00007 | 929895 | 935477 | Squamosa promoter-binding-like protein 1 | AGI-03 | 9.830 | |||||||||||
| Bf0115 | O | - | - | - | - | - | SI054,SI295 | Ciclev10029066m | scaffold_8 | 6317205 | 6322458 | C_unshiu_00484:mRNA_11.3 | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
| Al0637 | AAvailable marker | O | - | - | - | - | O | SI353 | Ciclev10019147m | scaffold_3 | 2939620 | 2941934 | C_unshiu_00092:mRNA_51.1 | C_unshiu_00092 | 363486 | 365791 | Spotted leaf protein, putative | |||||||||||
| Wy0063 | Wy0063.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | AGI-01 | 33.445 | ||||||||||
| Wy0064 | Wy0064.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | ||||||||||||
| Fb0322 | O | - | - | - | - | - | Ciclev10030532m | scaffold_4 | 3249710 | 3254808 | C_unshiu_00342:mRNA_35.1 | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
| Ov0312 | - | - | - | - | - | - | Ciclev10018858m | scaffold_3 | 1344192 | 1349935 | C_unshiu_00541:mRNA_19.1 | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
| Al0247 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10029281m | scaffold_8 | 2227827 | 2230752 | C_unshiu_00024:mRNA_15.1 | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
| Gn0021 | AAvailable marker | - | - | - | - | O | O | Ciclev10000597m | scaffold_5 | 39630111 | 39635609 | C_unshiu_01033:mRNA_10.1 | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
| Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | Ciclev10014319m | scaffold_2 | 35354776 | 35363026 | C_unshiu_00048:mRNA_32.1 | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
| Cp0532 | - | - | - | - | - | - | Ciclev10020319m | scaffold_3 | 30393811 | 30398972 | C_unshiu_00501:mRNA_15.1 | C_unshiu_00501 | 133280 | 137847 | Solanesyl diphosphate synthase | AGI-05 | 42.168 | |||||||||||
| Cp1144 | OOthers | - | - | - | - | - | - | Ciclev10028086m | scaffold_8 | 2649991 | 2655756 | C_unshiu_00152:mRNA_43.1 | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
| Bf0195 | - | - | - | - | - | - | SI369 | Ciclev10000780m | scaffold_5 | 31069237 | 31075092 | C_unshiu_00422:mRNA_5.1 | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
| Al0207 | OOthers | - | - | - | - | - | - | Ciclev10020027m | scaffold_3 | 4366802 | 4370111 | C_unshiu_00186:mRNA_18.1 | C_unshiu_00186 | 178635 | 181547 | SNF1-related protein kinase regulatory subunit gamma-1 | AGI-09 | 84.537 | JtR-09S | 9.929 | ||||||||
| If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10022993m | scaffold_3 | 42229224 | 42231230 | C_unshiu_00322:mRNA_21.1 | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
| Ov0512 | OOthers | O | - | - | - | - | - | Ciclev10006241m | scaffold_9 | 27198508 | 27199642 | C_unshiu_00433:mRNA_19.1 | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
| Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | Ciclev10030998m | scaffold_4 | 17143350 | 17147918 | C_unshiu_00478:mRNA_2.1 | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
| Tf0143 | - | - | - | - | - | - | SI127 | Ciclev10004758m | scaffold_9 | 30040457 | 30044615 | C_unshiu_00134:mRNA_22.1 | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
| Af1437 | - | - | - | - | - | - | Ciclev10002114m | scaffold_5 | 1474396 | 1479079 | C_unshiu_00060:mRNA_37.1 | C_unshiu_00060 | 309328 | 313345 | Short-chain alcohol dehydrogenase | AGI-09 | 92.804 | |||||||||||
| Al0231 | - | - | - | - | - | - | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
| Edw001 | AAvailable marker | - | - | - | - | - | O | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | ||||||||||||
| Ov0325 | - | - | - | - | - | - | Ciclev10016692m | scaffold_2 | 35180594 | 35182774 | C_unshiu_00048:mRNA_54.1 | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
| Cp1084 | OOthers | - | - | - | - | - | - | C_unshiu_01090:mRNA_3.1 | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
| Af1377 | - | - | - | - | - | - | Ciclev10001143m | scaffold_5 | 32780339 | 32783349 | C_unshiu_00224:mRNA_50.1 | C_unshiu_00224 | 297837 | 300694 | Seryl-tRNA synthetase (Serin-tRNA ligase) | AGI-09 | 70.624 | |||||||||||
| Af3017 | - | - | - | - | - | - | Ciclev10031492m | scaffold_4 | 24401841 | 24406470 | C_unshiu_00001:mRNA_224.1 | C_unshiu_00001 | 1415778 | 1420221 | Serine/threonine-protein kinase PBS1 | AGI-07 | 83.217 | |||||||||||
| Tf0199 | - | - | - | - | - | - | SI023,SI157 | Ciclev10000697m | scaffold_5 | 30994812 | 30999834 | C_unshiu_00422:mRNA_12.1 | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
| Al0228 | - | - | - | - | - | - | Ciclev10009018m | scaffold_1 | 26206063 | 26208427 | C_unshiu_00315:mRNA_25.1 | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
| Bf0161 | - | - | - | - | - | - | SI089,SI348 | Ciclev10015189m | scaffold_2 | 6658003 | 6660691 | C_unshiu_00072:mRNA_47.1 | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
| Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | Ciclev10020840m | scaffold_3 | 30648732 | 30651259 | C_unshiu_00759:mRNA_1.1 | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
| Bf0229 | - | - | - | - | - | - | SI253 | Ciclev10004848m | scaffold_9 | 17242218 | 17245901 | C_unshiu_00122:mRNA_16.1 | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
| Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | Ciclev10015053m | scaffold_2 | 31036088 | 31038222 | C_unshiu_00143:mRNA_11.1 | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
| Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10008869m | scaffold_1 | 23654785 | 23658857 | C_unshiu_00175:mRNA_30.1 | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
| Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10002770m | scaffold_5 | 29463604 | 29466318 | C_unshiu_01370:mRNA_6.1 | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
| Lg2005 | - | - | - | - | - | - | Ciclev10002751m | scaffold_5 | 42187714 | 42189727 | C_unshiu_00192:mRNA_45.1 | C_unshiu_00192 | 319592 | 321612 | SCF ubiquitin ligase, SKP1 component | AGI-09 | 34.172 | |||||||||||
| Bf0193 | O | - | - | - | - | - | SI100,SI109 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
| Tf0330 | - | - | - | - | - | - | SI064,SI139 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
| Bf0146 | O | - | - | - | - | - | Ciclev10022345m | scaffold_3 | 48528820 | 48531316 | C_unshiu_00026:mRNA_37.1 | C_unshiu_00026 | 280361 | 282836 | RRNA-processing protein FCF1 | AGI-05 | 78.274 | |||||||||||
| Tf0163 | AAvailable marker | O | - | - | - | O | O | Ciclev10010423m | scaffold_1 | 26740822 | 26744016 | C_unshiu_00105:mRNA_35.1 | C_unshiu_00105 | 316978 | 320206 | RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 | AGI-01 | 31.240 | ||||||||||
| Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | Ciclev10031860m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
| Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | Ciclev10031974m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
| Af1396 | - | - | - | - | - | - | Ciclev10022545m | scaffold_3 | 4920662 | 4923421 | C_unshiu_00520:mRNA_16.2 | C_unshiu_00520 | 166824 | 167867 | Ribosomal protein L19 family protein | AGI-05 | 28.041 | |||||||||||
| Al0234 | OOthers | - | - | - | - | - | - | Ciclev10005909m | scaffold_9 | 1372972 | 1374927 | C_unshiu_00369:mRNA_20.1 | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
| Cp0233 | - | - | - | - | - | - | Ciclev10031694m | scaffold_4 | 11210879 | 11216325 | C_unshiu_00061:mRNA_64.1 | C_unshiu_00061 | 550725 | 556167 | Ribose-phosphate pyrophosphokinase 4 | AGI-07 | 37.826 | |||||||||||
| Cp0062 | O | - | - | - | - | - | Ciclev10032378m | scaffold_4 | 16107199 | 16109587 | C_unshiu_01642:mRNA_2.1 | C_unshiu_01642 | 16316 | 20085 | Ribose-phosphate diphosphokinase | AGI-07 | 45.716 | |||||||||||
| Af1043 | - | - | - | - | - | - | Ciclev10026060m | scaffold_7 | 20049936 | 20052008 | C_unshiu_00519:mRNA_19.1 | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
| Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011346m | scaffold_6 | 7983788 | 7991526 | C_unshiu_02325:mRNA_1.1 | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
| Cp2237 | AAvailable marker | - | - | - | - | O | O | Ciclev10028314m | scaffold_8 | 13190041 | 13194829 | C_unshiu_01736:mRNA_2.1 | C_unshiu_01736 | 18986 | 23543 | Riboflavin biosynthesis protein ribBA, chloroplastic | AGI-08 | 55.965 | ||||||||||
| Cp1628 | - | - | - | - | - | - | Ciclev10021963m | scaffold_3 | 12822911 | 12825620 | C_unshiu_02666:mRNA_2.1 | C_unshiu_02666 | 10104 | 12687 | Rhodanese/cell cycle control phosphatase superfamily protein | AGI-05 | 41.272 | |||||||||||
| Edp005 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10000211m | scaffold_5 | 21203994 | 21212595 | C_unshiu_00020:mRNA_80.1 | C_unshiu_00020 | 742433 | 758888 | Retinoblastoma protein 2 | AGI-09 | 105.195 | RP-09 | 23.442 | ||||||||
| Af1036 | O | - | - | - | - | - | Ciclev10021080m | scaffold_3 | 7016831 | 7019863 | C_unshiu_00425:mRNA_11.1 | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
| Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | C_unshiu_00139:mRNA_45.1 | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
| Fb0138 | - | - | - | - | - | - | Ciclev10000092m | scaffold_5 | 38499024 | 38504883 | C_unshiu_00183:mRNA_7.1 | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
| Tf0112 | O | - | - | - | - | - | Ciclev10031118m | scaffold_4 | 17014582 | 17026325 | C_unshiu_00225:mRNA_9.1 | C_unshiu_00225 | 37090 | 44898 | Regulation of nuclear pre-mRNA domain-containing protein 1B | AGI-07 | 43.014 | |||||||||||
| Tf0238 | - | - | - | - | - | - | SI114 | Ciclev10026387m | scaffold_7 | 551893 | 553909 | C_unshiu_01559:mRNA_5.1 | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
| Ks9010 | AAvailable marker | - | - | - | - | O | O | Ciclev10007188m | scaffold_9 | 29460866 | 29463385 | C_unshiu_00056:mRNA_15.1 | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
| Ov0105 | MDisagree by Marco analysis | O | - | - | - | - | - | SI126,SI278 | Ciclev10031362m | scaffold_4 | 23552856 | 23556415 | C_unshiu_00001:mRNA_81.1 | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | NAT-07 | 36.023 | RP-07 | ||||||||
| Ov0105.2 | Ov0106.2 | - | - | - | - | - | - | Ciclev10031362m | scaffold_4 | 23552856 | 23556415 | C_unshiu_00001:mRNA_81.1 | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | AGI-07 | 74.064 | KmG-07 | 15.390 | JtR-07 | 5.947 | ||||||
| Af1100 | - | - | - | - | - | - | Ciclev10026703m | scaffold_7 | 10853487 | 10855215 | C_unshiu_00451:mRNA_17.1 | C_unshiu_00451 | 120744 | 122474 | Ran BP2/NZF zinc finger-like superfamily protein isoform 1 | AGI-02 | 13.326 | |||||||||||
| Bf1186 | - | - | - | - | - | - | SI245 | Ciclev10012047m | scaffold_6 | 21912438 | 21917736 | C_unshiu_00079:mRNA_40.1 | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
| Ov0419 | AAvailable marker | - | - | - | - | - | O | Ciclev10011593m | scaffold_6 | 16709179 | 16712039 | C_unshiu_00008:mRNA_31.2 | C_unshiu_00008 | 178086 | 180944 | Pyruvate decarboxylase | RP-04 | 11.143 | ||||||||||
| Lp0237 | Lp0237.k | - | - | - | - | - | - | Ciclev10007524m | scaffold_1 | 25987803 | 25992258 | C_unshiu_00066:mRNA_23.1 | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
| Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | Ciclev10000615m | scaffold_5 | 43060442 | 43066562 | C_unshiu_00370:mRNA_39.2 | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
| Lp0103 | OOthers | - | - | - | - | - | - | Ciclev10012274m | scaffold_6 | 16393309 | 16395378 | C_unshiu_00332:mRNA_15.1 | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
| Tf0148 | AAvailable marker | O | - | - | - | O | O | SI119 | Ciclev10032816m | scaffold_4 | 20998708 | 21001535 | C_unshiu_00010:mRNA_116.1 | C_unshiu_00010 | 869802 | 872410 | Putative WRKY transcription factor 75 | AGI-07 | 64.812 | |||||||||
| Cp0093 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10032427m | scaffold_4 | 23596434 | 23599906 | C_unshiu_00001:mRNA_89.1 | C_unshiu_00001 | 587949 | 598235 | Putative WRKY transcription factor 72 | AGI-07 | 74.537 | ||||||||||
| Tf0321 | - | - | - | - | - | - | SI003 | Ciclev10032283m | scaffold_4 | 24341642 | 24346244 | C_unshiu_00001:mRNA_213.1 | C_unshiu_00001 | 1358115 | 1363266 | Putative WRKY transcription factor 57 | ||||||||||||
| Tf0010 | - | - | - | - | - | - | Ciclev10021038m | scaffold_3 | 1054257 | 1056078 | C_unshiu_00609:mRNA_18.1 | C_unshiu_00609 | 77883 | 79313 | Putative WRKY transcription factor 41 | AGI-05 | ||||||||||||
| Gmom29 | - | - | - | - | - | - | Ciclev10000654m | scaffold_5 | 12677414 | 12680761 | C_unshiu_00578:mRNA_7.1 | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
| Edb003 | OOthers | - | - | - | - | - | - | Ciclev10032012m | scaffold_4 | 16046322 | 16048971 | C_unshiu_01260:mRNA_4.1 | C_unshiu_01260 | 30136 | 32342 | Putative WRKY transcription factor 28 | AGI-07 | 41.830 | ||||||||||
| Tf0411 | OOthers | O | - | - | - | - | - | Ciclev10020263m | scaffold_3 | 38111191 | 38116265 | C_unshiu_00523:mRNA_15.1 | C_unshiu_00523 | 100297 | 104594 | Putative transcription factor PosF21 | AGI-05 | 48.613 | ||||||||||
| Tf0004 | - | - | - | - | - | - | SI219,SI330 | Ciclev10014045m | scaffold_2 | 33074821 | 33084014 | C_unshiu_00153:mRNA_7.1 | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
| Bf0019 | - | - | - | - | - | - | Ciclev10028586m | scaffold_8 | 232123 | 235806 | C_unshiu_00376:mRNA_8.1 | C_unshiu_00376 | 72474 | 76027 | Putative serine/threonine-protein kinase Cx32 | RP-04 | ||||||||||||
| Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | Ciclev10004372m | scaffold_9 | 25073693 | 25080376 | C_unshiu_00119:mRNA_33.1 | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
| Wy0048 | Wy0048.k | - | - | - | - | - | - | Ciclev10010999m | scaffold_6 | 19900235 | 19904192 | C_unshiu_00043:mRNA_54.1 | C_unshiu_00043 | 424252 | 427984 | Putative receptor protein kinase TMK1 | AGI-04 | 63.371 | NAT-04 | 21.157 | ||||||||
| Af1700 | - | - | - | - | - | - | Ciclev10004322m | scaffold_9 | 18502293 | 18505531 | C_unshiu_00138:mRNA_34.1 | C_unshiu_00138 | 182719 | 186200 | Putative receptor protein kinase TMK1 | AGI-03 | 54.060 | |||||||||||
| Al0313 | AAvailable marker | O | - | - | - | O | O | Ciclev10011272m | scaffold_6 | 23966039 | 23969583 | C_unshiu_00133:mRNA_4.2 | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
| Tf0319 | - | - | - | - | - | - | SI152 | Ciclev10026319m | scaffold_7 | 6872666 | 6877291 | C_unshiu_00166:mRNA_10.1 | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
| Fb0389 | - | - | - | - | - | - | Ciclev10014121m | scaffold_2 | 25179668 | 25188103 | C_unshiu_00087:mRNA_31.1 | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
| Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10013467m | scaffold_6 | 23430375 | 23436161 | C_unshiu_00098:mRNA_32.2 | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
| Tf0212 | - | - | - | - | - | - | SI196 | Ciclev10030538m | scaffold_4 | 19816800 | 19825304 | C_unshiu_00535:mRNA_20.1 | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
| Tf0103 | - | - | - | - | - | - | Ciclev10002094m | scaffold_5 | 354416 | 357301 | C_unshiu_01920:mRNA_2.1 | C_unshiu_01920 | 10140 | 12134 | Putative NAC domain-containing protein 94 | AGI-09 | 93.685 | |||||||||||
| Af2893 | - | - | - | - | - | - | Ciclev10025356m | scaffold_7 | 1739443 | 1743149 | C_unshiu_01334:mRNA_6.1 | C_unshiu_01334 | 25863 | 29359 | Putative mitochondrial chaperone BCS1-B | AGI-02 | 73.779 | |||||||||||
| Tf0303 | - | - | - | - | - | - | SI082 | Ciclev10030491m | scaffold_4 | 6325180 | 6334300 | C_unshiu_00210:mRNA_10.1 | C_unshiu_00210 | 52148 | 60690 | Putative lysine-specific demethylase ELF6 | ||||||||||||
| Gn0100 | - | - | - | - | - | - | Ciclev10028245m | scaffold_8 | 19259623 | 19261508 | C_unshiu_00814:mRNA_2.1 | C_unshiu_00814 | 13987 | 15768 | Putative lycopene beta cyclase | AGI-08 | 44.669 | |||||||||||
| Af1109 | - | - | - | - | - | - | C_unshiu_00194:mRNA_16.1 | C_unshiu_00194 | 96415 | 98120 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | AGI-05 | 48.590 | |||||||||||||||
| Cp1085 | - | - | - | - | - | - | Ciclev10025935m | scaffold_7 | 2390010 | 2391658 | C_unshiu_00025:mRNA_42.1 | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
| Cp0672 | - | - | - | - | - | - | Ciclev10007769m | scaffold_1 | 28262202 | 28267878 | C_unshiu_00005:mRNA_26.1 | C_unshiu_00005 | 170218 | 174432 | Putative eukaryotic translation initiation factor 4 gamma | AGI-01 | 101.472 | |||||||||||
| Af1568 | - | - | - | - | - | - | C_unshiu_00591:mRNA_15.1 | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
| Tf0289 | - | - | - | - | - | - | SI207 | Ciclev10020486m | scaffold_3 | 915818 | 919213 | C_unshiu_01070:mRNA_6.1 | C_unshiu_01070 | 43545 | 46732 | Putative E3 ubiquitin-protein ligase UBR7 | ||||||||||||
| Cp1031 | AAvailable marker | - | O | - | - | O | O | Ciclev10005224m | scaffold_9 | 2324313 | 2328666 | C_unshiu_00394:mRNA_4.1 | C_unshiu_00394 | 11970 | 16480 | Putative E3 ubiquitin-protein ligase MARCH10 | AGI-03 | 18.610 | ||||||||||
| Cp0018 | - | - | - | - | - | - | Ciclev10005068m | scaffold_9 | 5605470 | 5610840 | C_unshiu_00057:mRNA_49.1 | C_unshiu_00057 | 415460 | 428173 | Putative E3 ubiquitin-protein ligase HERC1 | AGI-03 | 44.848 | |||||||||||
| Cp1738 | AAvailable marker | - | - | - | - | - | O | SI237,SI296 | Ciclev10025941m | scaffold_7 | 5388458 | 5389981 | C_unshiu_00303:mRNA_12.1 | C_unshiu_00303 | 100918 | 102276 | Putative clathrin assembly protein | |||||||||||
| Cp1034 | AtAvailable marker | - | - | - | - | O | O | Ciclev10005575m | scaffold_9 | 21107894 | 21109983 | C_unshiu_00160:mRNA_22.1 | C_unshiu_00160 | 182942 | 184946 | Putative calcium-binding protein CML48 | AGI-03 | 46.760 | ||||||||||
| Fb1678 | O | - | - | - | - | - | Ciclev10022198m | scaffold_3 | 6000266 | 6002833 | C_unshiu_00997:mRNA_6.2 | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
| Wy0019 | - | - | - | - | - | - | SI031 | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | ||||||||||||
| Tf0290 | AAvailable marker | O | - | - | - | O | O | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | AGI-08 | 57.802 | ||||||||||
| Tf0279 | - | - | - | - | - | - | SI073 | Ciclev10019219m | scaffold_3 | 49031441 | 49035202 | C_unshiu_00018:mRNA_78.1 | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | AGI-05 | 80.539 | ||||||||||
| Tf0293 | AAvailable marker | O | O | O | - | - | O | Ciclev10019219m | scaffold_3 | 49031441 | 49035202 | C_unshiu_00018:mRNA_78.1 | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | ||||||||||||
| Af1467 | - | - | - | - | - | - | Ciclev10008651m | scaffold_1 | 24171632 | 24175378 | C_unshiu_00047:mRNA_19.1 | C_unshiu_00047 | 116658 | 120038 | Putative amino acid permease 7 | AGI-01 | 29.784 | |||||||||||
| Cp0026 | - | - | - | - | - | - | Ciclev10014741m | scaffold_2 | 24938686 | 24943643 | C_unshiu_00472:mRNA_8.1 | C_unshiu_00472 | 85278 | 89618 | Putative ADP-glucose pyrophosphorylase small subunit | AGI-06 | 72.449 | |||||||||||
| Af1056 | - | - | - | - | - | - | Ciclev10015905m | scaffold_2 | 26595972 | 26598955 | C_unshiu_00262:mRNA_14.1 | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
| Wy0060 | Wy0060.em | - | - | - | - | - | - | Ciclev10020776m | scaffold_3 | 46998745 | 47002683 | C_unshiu_00023:mRNA_2.1 | C_unshiu_00023 | 7129 | 11067 | Pto kinase interactor 1 | AGI-02 | 14.597 | ||||||||||
| Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | Ciclev10027909m | scaffold_8 | 22730839 | 22737522 | C_unshiu_00158:mRNA_13.1 | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
| Fb0234 | - | - | - | - | - | - | SI250,SI265 | Ciclev10032271m | scaffold_4 | 16176836 | 16178421 | C_unshiu_00086:mRNA_8.1 | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
| Af1622 | - | - | - | - | - | - | Ciclev10008520m | scaffold_1 | 18117264 | 18119451 | C_unshiu_00187:mRNA_23.3 | C_unshiu_00187 | 141733 | 143877 | Protochlorophyllide reductase, chloroplastic | AGI-01 | 54.754 | |||||||||||
| Af1068 | O | - | - | - | - | - | Ciclev10021732m | scaffold_3 | 40110008 | 40113420 | C_unshiu_00335:mRNA_13.1 | C_unshiu_00335 | 99790 | 103133 | Protein vip1 | AGI-05 | 48.750 | |||||||||||
| Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | Ciclev10011780m | scaffold_6 | 24082263 | 24084635 | C_unshiu_00133:mRNA_13.1 | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
| Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00008:mRNA_8.1 | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
| Cp0632 | AAvailable marker | O | - | - | - | O | O | Ciclev10007941m | scaffold_1 | 27698934 | 27703620 | C_unshiu_00237:mRNA_7.1 | C_unshiu_00237 | 40930 | 45531 | Protein translocase subunit SecY | AGI-08 | 56.724 | ||||||||||
| Fb1751 | - | - | - | - | - | - | SI264 | Ciclev10025011m | scaffold_7 | 7977527 | 7984425 | C_unshiu_00121:mRNA_40.1 | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
| Tf0292 | OOthers | O | - | - | - | - | - | Ciclev10006112m | scaffold_9 | 31139789 | 31143240 | C_unshiu_00003:mRNA_98.2 | C_unshiu_00003 | 698480 | 711976 | Protein strawberry notch | AGI-03 | 77.793 | ||||||||||
| Mf0067 | OOthers | - | - | - | - | - | - | Ciclev10008855m | scaffold_1 | 7264569 | 7269002 | C_unshiu_00837:mRNA_9.1 | C_unshiu_00837 | 91807 | 96079 | Protein phosphatase 1 regulatory subunit pprA | KmG-032 | 18.460 | JtR-031 | 13.247 | ||||||||
| Lp0207 | O | - | - | - | - | - | Ciclev10021695m | scaffold_3 | 6140332 | 6142252 | C_unshiu_01103:mRNA_8.1 | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
| Cp0059 | O | - | - | - | - | - | Ciclev10031015m | scaffold_4 | 23075728 | 23081009 | C_unshiu_00001:mRNA_13.1 | C_unshiu_00001 | 89828 | 96147 | Protein NLRC3 | AGI-08 | 86.856 | |||||||||||
| Tf0012 | AAvailable marker | - | - | - | - | O | O | Ciclev10018673m | scaffold_3 | 37601493 | 37607586 | C_unshiu_00502:mRNA_21.1 | C_unshiu_00502 | 155419 | 162660 | Protein NLP8 | AGI-05 | 47.173 | ||||||||||
| Gn0101 | - | - | - | - | - | - | Ciclev10025706m | scaffold_7 | 662802 | 667420 | C_unshiu_00353:mRNA_30.1 | C_unshiu_00353 | 203269 | 207136 | Protein MID1-COMPLEMENTING ACTIVITY 1 | AGI-02 | 77.881 | |||||||||||
| Cp0237 | - | - | - | - | - | - | Ciclev10033007m | scaffold_4 | 10652381 | 10655082 | C_unshiu_00483:mRNA_11.1 | C_unshiu_00483 | 100177 | 109515 | Protein LSD1 | AGI-07 | 35.506 | |||||||||||
| Cp0537 | AAvailable marker | O | - | - | - | O | O | Ciclev10016779m | scaffold_2 | 34189216 | 34193815 | C_unshiu_00002:mRNA_71.2 | C_unshiu_00002 | 543564 | 547918 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 | AGI-06 | 25.930 | ||||||||||
| Gmom04 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
| Gmom16 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
| Tf0419 | AAvailable marker | O | O | O | - | - | O | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | ||||||||||||
| Cp2223 | OOthers | - | - | - | - | - | - | Ciclev10022371m | scaffold_3 | 3483334 | 3485637 | C_unshiu_00933:mRNA_9.1 | C_unshiu_00933 | 86958 | 89273 | Protein LATERAL ORGAN BOUNDARIES | AGI-05 | 25.049 | ||||||||||
| Bf0202 | - | - | - | - | - | - | Ciclev10000607m | scaffold_5 | 24103753 | 24107361 | C_unshiu_00011:mRNA_55.1 | C_unshiu_00011 | 511309 | 514460 | Protein ETHYLENE INSENSITIVE 3 | RP-09 | 27.641 | |||||||||||
| Af1554 | - | - | - | - | - | - | Ciclev10009386m | scaffold_1 | 23753759 | 23756754 | C_unshiu_00080:mRNA_59.1 | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
| Bf0016 | O | - | - | - | - | - | Ciclev10002605m | scaffold_5 | 35782419 | 35784765 | C_unshiu_00255:mRNA_23.1 | C_unshiu_00255 | 146364 | 148653 | Protein CutA 1, chloroplastic | RP-09 | 67.943 | |||||||||||
| Gmom19 | - | - | - | - | - | - | Ciclev10011554m | scaffold_6 | 21450811 | 21454133 | C_unshiu_00037:mRNA_27.1 | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
| Cp1736 | - | - | - | - | - | - | Ciclev10026179m | scaffold_7 | 5640058 | 5643125 | C_unshiu_00761:mRNA_15.2 | C_unshiu_00761 | 89991 | 92755 | Protein CbbY | AGI-02 | 50.716 | |||||||||||
| Fb0225 | - | - | - | - | - | - | Ciclev10008570m | scaffold_1 | 4873970 | 4878979 | C_unshiu_00039:mRNA_6.1 | C_unshiu_00039 | 54980 | 59746 | Protein arginine N-methyltransferase 1 | RP-05 | 33.168 | |||||||||||
| Af1593 | - | - | - | - | - | - | Ciclev10015971m | scaffold_2 | 27738397 | 27741912 | C_unshiu_00745:mRNA_8.1 | C_unshiu_00745 | 82265 | 85742 | Prolactin regulatory element-binding protein, putative | AGI-06 | 61.501 | |||||||||||
| Al0224 | AAvailable marker | - | O | - | - | O | O | Ciclev10015872m | scaffold_2 | 26630154 | 26632900 | C_unshiu_00262:mRNA_19.1 | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
| Bf0024 | O | - | - | - | - | - | SI093 | Ciclev10002093m | scaffold_5 | 38134662 | 38138860 | C_unshiu_00319:mRNA_24.1 | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
| Wy0028 | AAvailable marker | - | - | - | - | O | O | Ciclev10007806m | scaffold_1 | 25001341 | 25004726 | C_unshiu_00150:mRNA_3.1 | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
| Al0601 | - | - | - | - | - | - | C_unshiu_00065:mRNA_8.1 | C_unshiu_00065 | 39268 | 43421 | Probable GTP diphosphokinase RSH2, chloroplastic | AGI-08 | 93.624 | |||||||||||||||
| Af1486 | - | - | - | - | - | - | Ciclev10029576m | scaffold_8 | 17510926 | 17513265 | C_unshiu_00962:mRNA_1.1 | C_unshiu_00962 | 434 | 2684 | Prefoldin subunit 4 | AGI-08 | 59.562 | |||||||||||
| Gmom26 | - | - | - | - | - | - | Ciclev10005911m | scaffold_9 | 713868 | 716708 | C_unshiu_00007:mRNA_76.1 | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
| Af1062 | - | - | - | - | - | - | Ciclev10012766m | scaffold_6 | 14892939 | 14897320 | C_unshiu_00102:mRNA_47.1 | C_unshiu_00102 | 331172 | 333886 | PRA1 family protein A1 | AGI-08 | 93.624 | |||||||||||
| Al0011 | Al0010.2 | - | - | - | - | - | - | Ciclev10012654m | scaffold_6 | 10316999 | 10318328 | C_unshiu_00806:mRNA_1.2 | C_unshiu_00806 | 21305 | 22892 | Polyubiquitin | AGI-03 | 46.768 | ||||||||||
| Lp0212 | O | - | - | - | - | - | Ciclev10030930m | scaffold_4 | 22697056 | 22699336 | C_unshiu_00004:mRNA_48.1 | C_unshiu_00004 | 381547 | 383756 | Polygalacturonase 1 beta-like protein 3 | AGI-07 | 69.544 | |||||||||||
| Fb2156 | Fb2156.lg | O | - | - | - | - | - | Ciclev10000537m | scaffold_5 | 39992234 | 39996269 | C_unshiu_00096:mRNA_31.1 | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
| Tf0410 | AAvailable marker | O | - | - | - | O | O | Ciclev10032838m | scaffold_4 | 213798 | 215848 | C_unshiu_00168:mRNA_34.1 | C_unshiu_00168 | 273522 | 275858 | Pollen-specific protein SF3 | AGI-07 | 6.146 | ||||||||||
| Bf0008 | - | - | - | - | - | - | SI309 | Ciclev10012950m | scaffold_6 | 22467565 | 22470029 | C_unshiu_00038:mRNA_5.1 | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
| Af1059 | - | - | - | - | - | - | Ciclev10011827m | scaffold_6 | 23066384 | 23072168 | C_unshiu_00038:mRNA_98.1 | C_unshiu_00038 | 554982 | 560549 | Plastidic glucose transporter 4 | AGI-04 | 44.840 | |||||||||||
| Wy0058 | Wy0058.em | - | - | - | - | - | - | Ciclev10016274m | scaffold_2 | 29140509 | 29143804 | C_unshiu_00022:mRNA_58.1 | C_unshiu_00022 | 424974 | 428249 | Plastid ribosomal protein L15 | ||||||||||||
| If0011 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10013189m | scaffold_6 | 20522569 | 20523527 | C_unshiu_00331:mRNA_8.1 | C_unshiu_00331 | 122906 | 127189 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 | ||||||||||||
| Al0505 | - | - | - | - | - | - | Ciclev10032306m | scaffold_4 | 947943 | 949892 | C_unshiu_00012:mRNA_14.1 | C_unshiu_00012 | 117194 | 125051 | Plasma membrane intrinsic protein | RP-07 | 51.815 | |||||||||||
| Af1370 | - | - | - | - | - | - | Ciclev10009015m | scaffold_1 | 8822834 | 8826308 | C_unshiu_00579:mRNA_6.1 | C_unshiu_00579 | 46507 | 50108 | Plasma membrane | AGI-01 | 56.590 | |||||||||||
| Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | C_unshiu_00343:mRNA_25.1 | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
| Fb2159 | - | - | - | - | - | - | SI205,SI300 | Ciclev10021136m | scaffold_3 | 39606431 | 39608387 | C_unshiu_00037:mRNA_76.1 | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
| Cp2188 | AAvailable marker | - | - | - | - | O | O | Ciclev10028997m | scaffold_8 | 24666729 | 24669708 | C_unshiu_00021:mRNA_116.1 | C_unshiu_00021 | 778469 | 782836 | Phytol kinase | AGI-08 | 2.186 | ||||||||||
| Gn0008 | OOthers | - | - | - | - | - | - | SI176 | Ciclev10005632m | scaffold_9 | 17789634 | 17793258 | C_unshiu_00098:mRNA_1.1 | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
| Gn0065 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00021:mRNA_4.1 | C_unshiu_00021 | 34178 | 38574 | Phytoene desaturase | AGI-09 | 79.316 | ||||||||||||||
| Lp0126 | AAvailable marker | O | - | - | - | O | O | Ciclev10025164m | scaffold_7 | 3946818 | 3949964 | C_unshiu_00801:mRNA_10.1 | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
| Af1575 | - | - | - | - | - | - | Ciclev10029551m | scaffold_8 | 17524835 | 17526697 | C_unshiu_02252:mRNA_4.1 | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
| Cp2232 | AAvailable marker | - | - | - | - | O | O | Ciclev10002687m | scaffold_5 | 17809523 | 17810742 | C_unshiu_01815:mRNA_5.1 | C_unshiu_01815 | 28593 | 29777 | Photosystem I reaction center subunit N | AGI-02 | 22.436 | ||||||||||
| Cp0221 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10016539m | scaffold_2 | 30648531 | 30649856 | C_unshiu_00125:mRNA_61.1 | C_unshiu_00125 | 360098 | 361069 | Photosystem I reaction center subunit III | ||||||||||||
| Bf0177 | - | - | - | - | - | - | SI060 | Ciclev10022075m | scaffold_3 | 8186689 | 8189902 | C_unshiu_00154:mRNA_43.2 | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
| Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_01048:mRNA_12.1 | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
| Cp1162 | AAvailable marker | - | - | - | - | O | O | Ciclev10001345m | scaffold_5 | 35908181 | 35912917 | C_unshiu_00255:mRNA_35.1 | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
| Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | Ciclev10012056m | scaffold_6 | 21137783 | 21142157 | C_unshiu_00052:mRNA_27.2 | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
| Fb0227 | - | - | - | - | - | - | Ciclev10026002m | scaffold_7 | 2938059 | 2940407 | C_unshiu_00084:mRNA_42.1 | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
| Vt0030 | Vt0030.k | O | - | - | - | - | - | Ciclev10024917m | scaffold_7 | 11271705 | 11277014 | C_unshiu_01240:mRNA_4.1 | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
| Cp0030 | O | - | - | - | - | - | Ciclev10019700m | scaffold_3 | 43815647 | 43818118 | C_unshiu_00869:mRNA_1.1 | C_unshiu_00869 | 176 | 1664 | Phospholipase A1-Igamma1, chloroplastic | AGI-05 | 53.642 | |||||||||||
| Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10000651m | scaffold_5 | 39858531 | 39862402 | C_unshiu_00096:mRNA_9.1 | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
| Lg2002 | - | - | - | - | - | - | Ciclev10028055m | scaffold_8 | 2646458 | 2649562 | C_unshiu_00152:mRNA_44.1 | C_unshiu_00152 | 294607 | 297615 | Phosphoglycerate dehydrogenase | AGI-08 | 69.974 | |||||||||||
| Al0320 | - | - | - | - | - | - | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
| Al0320.2 | Al0320.em | AAvailable marker | - | - | - | - | - | O | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||
| Fb0124 | - | - | - | - | - | - | SI167,SI212 | Ciclev10014164m | scaffold_2 | 11088808 | 11095416 | C_unshiu_00184:mRNA_31.1 | C_unshiu_00184 | 275231 | 281575 | Phosphoenolpyruvate carboxylase | ||||||||||||
| Af1253 | - | - | - | - | - | - | Ciclev10020405m | scaffold_3 | 3201206 | 3204377 | C_unshiu_00163:mRNA_29.1 | C_unshiu_00163 | 211551 | 214568 | Phosphate/phosphoenolpyruvate translocator | AGI-05 | 24.709 | |||||||||||
| Af3822 | - | - | - | - | - | - | Ciclev10004695m | scaffold_9 | 5494254 | 5497030 | C_unshiu_00164:mRNA_13.1 | C_unshiu_00164 | 74059 | 75936 | Phosphate transporter | AGI-03 | 44.864 | |||||||||||
| Al0618 | AAvailable marker | - | - | - | - | O | O | Ciclev10000916m | scaffold_5 | 40872793 | 40877775 | C_unshiu_00123:mRNA_34.1 | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
| Bf0005 | - | - | - | - | - | - | SI194 | Ciclev10005100m | scaffold_9 | 465444 | 468143 | C_unshiu_00007:mRNA_115.1 | C_unshiu_00007 | 710354 | 712926 | Phosphatase 2C family protein | AGI-03 | 8.177 | ||||||||||
| Lp0009 | DDominant marker | - | - | - | - | - | - | Ciclev10005585m | scaffold_9 | 30171791 | 30177202 | C_unshiu_00134:mRNA_8.1 | C_unshiu_00134 | 71410 | 76705 | Phosphatase 2C 76 isoform 1 | KmG-05S | 36.573 | JtR-05 | 12.427 | ||||||||
| Af1452 | - | - | - | - | - | - | Ciclev10018443m | scaffold_3 | 5518457 | 5529974 | C_unshiu_00900:mRNA_3.1 | C_unshiu_00900 | 20186 | 30140 | Pheromone-processing carboxypeptidase kex1 | AGI-05 | 29.863 | |||||||||||
| Ov0510 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011175m | scaffold_6 | 10016564 | 10019369 | C_unshiu_00279:mRNA_11.1 | C_unshiu_00279 | 116848 | 119657 | Phenylalanine ammonia-lyase 1 | KmG-04 | 62.284 | JtR-04 | 3.789 | ||||||||
| Tf0315 | AAvailable marker | O | - | - | - | O | O | Ciclev10012089m | scaffold_6 | 14087181 | 14090115 | C_unshiu_00287:mRNA_20.1 | C_unshiu_00287 | 221944 | 222997 | Phantastica | AGI-08 | 93.657 | ||||||||||
| Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | C_unshiu_00087:mRNA_54.1 | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
| Af1589 | - | - | - | - | - | - | Ciclev10005524m | scaffold_9 | 30995129 | 30999295 | C_unshiu_00003:mRNA_80.1 | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
| Af1026 | O | - | - | - | - | - | Ciclev10016450m | scaffold_2 | 24690261 | 24692734 | C_unshiu_00136:mRNA_33.1 | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
| Wy0062 | Wy0062.em | - | - | - | - | - | - | Ciclev10011305m | scaffold_6 | 15214969 | 15222324 | C_unshiu_00034:mRNA_76.1 | C_unshiu_00034 | 634791 | 641934 | Peptidyl-prolyl cis-trans isomerase PASTICCINO1 | AGI-02 | 78.531 | ||||||||||
| Al0402 | AAvailable marker | O | - | - | - | O | O | C_unshiu_00008:mRNA_88.1 | C_unshiu_00008 | 564906 | 567158 | Peptide upstream ORF protein, putative | AGI-08 | 81.190 | KmG-04 | 44.163 | NAT-04 | 28.388 | ||||||||||
| Tf0053 | - | - | - | - | - | - | SI305 | Ciclev10022321m | scaffold_3 | 29153425 | 29156189 | C_unshiu_01169:mRNA_3.1 | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
| Cp1880 | AAvailable marker | - | - | - | - | - | O | Ciclev10016235m | scaffold_2 | 9351630 | 9354621 | C_unshiu_00067:mRNA_9.1 | C_unshiu_00067 | 71252 | 74672 | Peptide deformylase | ||||||||||||
| Af1443 | - | - | - | - | - | - | Ciclev10011413m | scaffold_6 | 25048398 | 25053494 | C_unshiu_00009:mRNA_3.1 | C_unshiu_00009 | 15765 | 28846 | Pentatricopeptide repeat-containing family protein | AGI-04 | 33.808 | |||||||||||
| Bf0004 | - | - | - | - | - | - | SI273 | Ciclev10005212m | scaffold_9 | 29563003 | 29568705 | C_unshiu_00056:mRNA_33.1 | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
| Bf0138 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10019462m | scaffold_3 | 6072460 | 6076187 | C_unshiu_00428:mRNA_16.2 | C_unshiu_00428 | 119232 | 121021 | Oxygen-evolving enhancer protein 2, chloroplastic | NAT-05 | 14.555 | RP-05 | 24.995 | ||||||||
| Ov0407 | AAvailable marker | - | - | - | - | O | O | Ciclev10000563m | scaffold_5 | 37043417 | 37051080 | C_unshiu_00773:mRNA_1.1 | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
| Cp1279 | AAvailable marker | - | - | - | - | O | O | Ciclev10031414m | scaffold_4 | 12900777 | 12903692 | C_unshiu_00461:mRNA_17.1 | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
| Cp1798 | AAvailable marker | - | - | - | - | O | O | Ciclev10012134m | scaffold_6 | 20319677 | 20323198 | C_unshiu_00215:mRNA_34.1 | C_unshiu_00215 | 205164 | 208490 | Orange 2 | AGI-04 | 60.291 | ||||||||||
| Tf0397 | - | - | - | - | - | - | SI008 | Ciclev10013334m | scaffold_6 | 23657256 | 23657810 | C_unshiu_00098:mRNA_65.1 | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
| Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | Ciclev10004850m | scaffold_9 | 13440332 | 13442904 | C_unshiu_02379:mRNA_2.1 | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
| Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | Ciclev10028241m | scaffold_8 | 23456630 | 23459052 | C_unshiu_00375:mRNA_4.1 | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
| Al0628 | - | - | - | - | - | - | Ciclev10004696m | scaffold_9 | 28974337 | 28977865 | C_unshiu_00045:mRNA_76.1 | C_unshiu_00045 | 547196 | 550605 | O-glucosyltransferase rumi like | KmG-031 | 5.650 | |||||||||||
| Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | Ciclev10013536m | scaffold_6 | 22616979 | 22619271 | C_unshiu_00038:mRNA_27.1 | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
| Vs0004 | - | - | - | - | - | - | Ciclev10021761m | scaffold_3 | 2078691 | 2083111 | C_unshiu_00490:mRNA_23.1 | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
| Cp2229 | AAvailable marker | - | - | - | - | O | O | Ciclev10022058m | scaffold_3 | 4117485 | 4120274 | C_unshiu_00318:mRNA_6.1 | C_unshiu_00318 | 44376 | 47085 | Nucleoside diphosphate kinase | AGI-05 | 27.135 | ||||||||||
| Ov0114 | - | - | - | - | - | - | C_unshiu_00206:mRNA_12.3 | C_unshiu_00206 | 75980 | 77488 | Nucleoside diphosphate kinase | KmG-032 | 18.485 | JtR-031 | 11.761 | |||||||||||||
| Tf0334 | - | - | - | - | - | - | SI034 | Ciclev10007003m | scaffold_9 | 30983347 | 30984159 | C_unshiu_00003:mRNA_76.2 | C_unshiu_00003 | 557862 | 561962 | Nuclear transcription factor Y subunit C-9 | ||||||||||||
| Tf0243 | - | - | - | - | - | - | SI231 | Ciclev10032893m | scaffold_4 | 3636667 | 3641089 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | ||||||||||||
| Tf0348 | - | - | - | - | - | - | SI118 | Ciclev10012920m | scaffold_6 | 11611994 | 11614367 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
| Tf0432 | AAvailable marker | O | - | - | - | O | O | Ciclev10016685m | scaffold_2 | 31420457 | 31425299 | C_unshiu_00091:mRNA_39.1 | C_unshiu_00091 | 370141 | 375026 | Nuclear transcription factor Y subunit A-7 | AGI-06 | 38.958 | ||||||||||
| Cp0849 | - | - | - | - | - | - | SI355 | Ciclev10012425m | scaffold_6 | 17651466 | 17653457 | C_unshiu_00090:mRNA_56.2 | C_unshiu_00090 | 364770 | 367591 | Non-green plastid inner envelope membrane protein | ||||||||||||
| Mf0058 | T3 or more alleleic model | - | - | - | - | - | - | Ciclev10022378m | scaffold_3 | 46818817 | 46822856 | C_unshiu_00053:mRNA_58.1 | C_unshiu_00053 | 481338 | 485184 | Nitrogen regulatory protein P-II | AGI-08 | 57.196 | JtR-05 | 39.516 | ||||||||
| Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016069m | scaffold_2 | 32640743 | 32643349 | C_unshiu_00070:mRNA_53.1 | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
| Cp0996 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI340 | Ciclev10004474m | scaffold_9 | 543444 | 546746 | C_unshiu_00007:mRNA_105.1 | C_unshiu_00007 | 630727 | 633783 | Neutral/alkaline invertase | AGI-03 | 9.366 | |||||||||
| Wy0055 | Wy0055.em | - | - | - | - | - | - | C_unshiu_00005:mRNA_81.1 | C_unshiu_00005 | 686926 | 696896 | Neurochondrin | AGI-01 | 118.691 | ||||||||||||||
| Ov0501 | - | - | - | - | - | - | Ciclev10019938m | scaffold_3 | 48089473 | 48091232 | C_unshiu_00026:mRNA_86.1 | C_unshiu_00026 | 712172 | 713868 | Nepenthesin II | RP-05 | 61.026 | |||||||||||
| Lp0235 | O | - | - | - | - | - | Ciclev10019848m | scaffold_3 | 9466071 | 9468445 | C_unshiu_00227:mRNA_19.1 | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
| Af1600 | - | - | - | - | - | - | Ciclev10013134m | scaffold_6 | 22758027 | 22760875 | C_unshiu_00038:mRNA_51.4 | C_unshiu_00038 | 305110 | 307864 | Negatively light-regulated protein | AGI-04 | 5.122 | |||||||||||
| Lp0202 | O | - | - | - | - | - | Ciclev10006509m | scaffold_9 | 3131006 | 3134438 | C_unshiu_00051:mRNA_31.2 | C_unshiu_00051 | 239802 | 243699 | NEDD8-activating enzyme E1 catalytic subunit | AGI-03 | 23.085 | |||||||||||
| Cp1791 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10027428m | scaffold_7 | 11604464 | 11607028 | C_unshiu_00582:mRNA_4.1 | C_unshiu_00582 | 10067 | 11470 | NBS-LRR type disease resistance protein | AGI-02 | 12.969 | ||||||||||
| Tf0153 | AAvailable marker | O | - | - | - | O | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | AGI-05 | 41.267 | ||||||||||
| Tf0154 | AAvailable marker | O | - | - | - | - | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | ||||||||||||
| Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | Ciclev10022215m | scaffold_3 | 13810497 | 13813004 | C_unshiu_00542:mRNA_3.1 | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
| Gn0097 | - | - | - | - | - | - | Ciclev10005133m | scaffold_9 | 10246239 | 10248409 | C_unshiu_00372:mRNA_8.1 | C_unshiu_00372 | 77039 | 79209 | Naringenin-chalcone synthase | AGI-02 | ||||||||||||
| Mf0007 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10008907m | scaffold_1 | 17471330 | 17472833 | C_unshiu_00044:mRNA_52.1 | C_unshiu_00044 | 424343 | 425685 | NADPH-dependent codeinone reductase-like protein | ||||||||||||
| Al0206 | AAvailable marker | - | - | - | - | O | O | Ciclev10032727m | scaffold_4 | 12309480 | 12311438 | C_unshiu_00365:mRNA_26.1 | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
| Bf0033 | - | - | - | - | - | - | SI356,SI379 | Ciclev10007537m | scaffold_1 | 27204998 | 27211059 | C_unshiu_00347:mRNA_22.1 | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
| Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | Ciclev10008900m | scaffold_1 | 4722889 | 4726339 | C_unshiu_00547:mRNA_9.1 | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
| Cp0459 | - | - | - | - | - | - | Ciclev10016822m | scaffold_2 | 27549660 | 27551146 | C_unshiu_00017:mRNA_86.1 | C_unshiu_00017 | 707192 | 708314 | NADH dehydrogenase-like complex L | AGI-06 | 74.140 | |||||||||||
| Af1047 | - | - | - | - | - | - | Ciclev10019002m | scaffold_3 | 16357227 | 16363309 | C_unshiu_01252:mRNA_3.1 | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
| Tf0230 | - | - | - | - | - | - | SI140 | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
| Tf0406 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | AGI-01 | 28.515 | ||||||||||
| Al0308 | - | - | - | - | - | - | SI045 | Ciclev10028262m | scaffold_8 | 24521116 | 24524868 | C_unshiu_00021:mRNA_97.1 | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
| Tf0336 | - | - | - | - | - | - | Ciclev10029022m | scaffold_8 | 10574673 | 10578797 | C_unshiu_02599:mRNA_1.1 | C_unshiu_02599 | 10362 | 14310 | NAD(P)-linked oxidoreductase superfamily protein | AGI-08 | 54.304 | |||||||||||
| Af1580 | - | - | - | - | - | - | Ciclev10016368m | scaffold_2 | 35013848 | 35015439 | C_unshiu_00048:mRNA_76.1 | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
| Gmom22 | - | - | - | - | - | - | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
| Tf0323 | - | - | - | - | - | - | SI030 | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
| Tf0339 | - | - | - | - | - | - | SI019 | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
| Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | Ciclev10020717m | scaffold_3 | 40963774 | 40965744 | C_unshiu_00735:mRNA_9.1 | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
| Bf0125 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | NAT-03 | 8.920 | RP-03 | 31.431 | |||||||||
| Tf0147 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | AGI-02 | 22.436 | |||||||||||
| Tf0310 | - | - | - | - | - | - | Ciclev10031598m | scaffold_4 | 19681884 | 19685929 | C_unshiu_00099:mRNA_27.1 | C_unshiu_00099 | 233334 | 237357 | NAC domain-containing protein 8 | AGI-07 | 54.869 | |||||||||||
| Tf0076 | - | - | - | - | - | - | SI266 | Ciclev10031150m | scaffold_4 | 7200135 | 7204232 | C_unshiu_00013:mRNA_63.3 | C_unshiu_00013 | 459064 | 463137 | NAC domain-containing protein 78 | AGI-07 | 38.565 | ||||||||||
| Tf0066 | - | - | - | - | - | - | SI221 | Ciclev10008812m | scaffold_1 | 18270818 | 18273015 | C_unshiu_00187:mRNA_34.1 | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
| Wy0025 | - | - | - | - | - | - | SI004 | Ciclev10032547m | scaffold_4 | 24434005 | 24435526 | C_unshiu_00001:mRNA_229.1 | C_unshiu_00001 | 1446446 | 1447952 | NAC domain-containing protein 29 | ||||||||||||
| Tf0332 | - | - | - | - | - | - | SI081 | Ciclev10001976m | scaffold_5 | 37586834 | 37589255 | C_unshiu_00985:mRNA_11.1 | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
| Lp0031 | - | - | - | - | - | - | Ciclev10027944m | scaffold_8 | 22261408 | 22266208 | C_unshiu_00639:mRNA_5.1 | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
| Af1110 | - | - | - | - | - | - | Ciclev10028599m | scaffold_8 | 9656865 | 9660001 | C_unshiu_01425:mRNA_1.1 | C_unshiu_01425 | 333 | 5522 | N-carbamoylputrescine amidase | AGI-08 | 56.690 | |||||||||||
| Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
| Sd0004 | - | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 40.459 | |||||||||||||||
| Al0204 | - | - | - | - | - | - | Ciclev10008298m | scaffold_1 | 275263 | 280936 | C_unshiu_00003:mRNA_150.2 | C_unshiu_00003 | 1127884 | 1133567 | Myosin heavy chain-like protein | JtR-09S | 5.527 | |||||||||||
| Tf0240 | - | - | - | - | - | - | SI184 | Ciclev10018505m | scaffold_3 | 42718991 | 42733040 | C_unshiu_00386:mRNA_19.1 | C_unshiu_00386 | 164396 | 178993 | Myosin 2 | ||||||||||||
| Ov0004 | - | - | - | - | - | - | Ciclev10025545m | scaffold_7 | 20360086 | 20363290 | C_unshiu_00650:mRNA_9.1 | C_unshiu_00650 | 86670 | 89289 | Myo-inositol-1 phosphate synthase | KmG-02 | 17.680 | NAT-02S | ||||||||||
| Tf0256 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021699m | scaffold_3 | 43420187 | 43422432 | C_unshiu_00411:mRNA_13.1 | C_unshiu_00411 | 116444 | 118424 | Myb-related protein Myb4 | AGI-05 | 52.314 | ||||||||||
| Tf0050 | - | - | - | - | - | - | SI104,SI346 | Ciclev10012152m | scaffold_6 | 24874840 | 24876388 | C_unshiu_00135:mRNA_12.1 | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
| Tf0402 | - | - | - | - | - | - | Ciclev10015893m | scaffold_2 | 36211961 | 36216858 | C_unshiu_00077:mRNA_57.1 | C_unshiu_00077 | 335424 | 340163 | MYB-CC type transfactor | AGI-06 | 9.560 | |||||||||||
| Tf0094 | - | - | - | - | - | - | SI006 | Ciclev10031937m | scaffold_4 | 23957038 | 23959134 | C_unshiu_00001:mRNA_145.1 | C_unshiu_00001 | 950657 | 954895 | Myb family transcription factor APL | AGI-07 | 77.141 | ||||||||||
| Tf0117 | - | - | - | - | - | - | Ciclev10005596m | scaffold_9 | 15107375 | 15113804 | C_unshiu_00170:mRNA_11.1 | C_unshiu_00170 | 91205 | 97326 | Myb family transcription factor APL | AGI-03 | 46.274 | |||||||||||
| Tf0307 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10009286m | scaffold_1 | 25395688 | 25397278 | C_unshiu_00442:mRNA_24.1 | C_unshiu_00442 | 209015 | 209831 | Myb domain protein 5 | AGI-01 | 23.266 | ||||||||||
| Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | Ciclev10012265m | scaffold_6 | 22305922 | 22308021 | C_unshiu_00252:mRNA_6.1 | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
| Af1505 | - | - | - | - | - | - | Ciclev10031326m | scaffold_4 | 1531262 | 1535758 | C_unshiu_00012:mRNA_96.1 | C_unshiu_00012 | 704342 | 708725 | Multiple inositol polyphosphate phosphatase 1 | AGI-07 | 12.283 | |||||||||||
| Cp0214 | OOthers | - | - | - | - | - | - | Ciclev10016075m | scaffold_2 | 29732249 | 29735969 | C_unshiu_00073:mRNA_25.1 | C_unshiu_00073 | 178507 | 182191 | MOSC domain-containing protein 2, mitochondrial | AGI-06 | 46.660 | ||||||||||
| Lp0206 | O | - | - | - | - | - | Ciclev10011764m | scaffold_6 | 20836509 | 20840107 | C_unshiu_00052:mRNA_56.1 | C_unshiu_00052 | 452105 | 455631 | Monodehydroascorbate reductase | AGI-04 | 58.655 | |||||||||||
| Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | Ciclev10004660m | scaffold_9 | 2732900 | 2738896 | C_unshiu_00040:mRNA_76.1 | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
| Al0022 | - | - | - | - | - | - | Ciclev10011465m | scaffold_6 | 25364317 | 25368608 | C_unshiu_00009:mRNA_62.1 | C_unshiu_00009 | 346583 | 350755 | Mitochondrial-processing peptidase subunit alpha | SA-09 | 42.503 | |||||||||||
| Al0212 | O | - | - | - | - | - | Ciclev10026128m | scaffold_7 | 5258045 | 5259521 | C_unshiu_00288:mRNA_19.1 | C_unshiu_00288 | 142758 | 144183 | Mitochondrial uncoupling protein 3 | KmG-02 | 43.821 | JtR-02 | 30.507 | RP-08 | ||||||||
| Vs0015 | OOthers | - | - | - | - | - | - | C_unshiu_00001:mRNA_84.1 | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
| Fb0313 | - | - | - | - | - | - | Ciclev10002602m | scaffold_5 | 29803196 | 29804310 | C_unshiu_00570:mRNA_7.1 | C_unshiu_00570 | 69328 | 70168 | Mitochondrial import inner membrane translocase subunit tim23 | RP-07 | 9.871 | |||||||||||
| Af1629 | - | - | - | - | - | - | Ciclev10012332m | scaffold_6 | 2969527 | 2973147 | C_unshiu_00060:mRNA_62.1 | C_unshiu_00060 | 539807 | 543307 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | AGI-07 | 39.420 | |||||||||||
| Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10003485m | scaffold_5 | 36398988 | 36399239 | C_unshiu_00241:mRNA_9.1 | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
| Fb0329 | - | - | - | - | - | - | Ciclev10004180m | scaffold_9 | 29237838 | 29242883 | C_unshiu_00606:mRNA_2.1 | C_unshiu_00606 | 13693 | 18703 | Methyltransferase MT-A70 family protein isoform 1 | AGI-03 | 60.686 | |||||||||||
| Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10019489m | scaffold_3 | 24840386 | 24845254 | C_unshiu_00286:mRNA_25.1 | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
| Al0614 | - | - | - | - | - | - | Ciclev10022348m | scaffold_3 | 44987719 | 44991534 | C_unshiu_00069:mRNA_32.1 | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
| Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_00375:mRNA_10.1 | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
| Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_02110:mRNA_3.2 | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
| Fb0153 | - | - | - | - | - | - | Ciclev10002324m | scaffold_5 | 36347986 | 36350649 | C_unshiu_02857:mRNA_2.1 | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
| Mf0094 | AAvailable marker | - | - | - | - | O | O | Ciclev10026594m | scaffold_7 | 3721375 | 3722616 | C_unshiu_00169:mRNA_29.1 | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
| Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | Ciclev10029386m | scaffold_8 | 8176371 | 8177435 | C_unshiu_00728:mRNA_1.1 | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
| Gn0052 | - | - | - | - | - | - | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | KmG-032 | 15.450 | JtR-031 | 12.830 | |||||||||
| Wy0032 | OOthers | O | - | - | - | O | O | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
| Wy0020 | - | - | - | - | - | - | SI007 | Ciclev10005394m | scaffold_9 | 5549195 | 5553148 | C_unshiu_00164:mRNA_5.1 | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
| Fb0275 | O | - | - | - | - | - | Ciclev10008562m | scaffold_1 | 15883118 | 15887517 | C_unshiu_00288:mRNA_9.1 | C_unshiu_00288 | 55910 | 60461 | Malate dehydrogenase | AGI-01 | 55.687 | |||||||||||
| Vt0009 | - | - | - | - | - | - | Ciclev10012382m | scaffold_6 | 24932481 | 24935909 | C_unshiu_00135:mRNA_6.1 | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
| Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | Ciclev10011842m | scaffold_6 | 21598429 | 21600967 | C_unshiu_00037:mRNA_7.2 | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
| Af1116 | - | - | - | - | - | - | Ciclev10001154m | scaffold_5 | 6749024 | 6753178 | C_unshiu_00100:mRNA_44.1 | C_unshiu_00100 | 361556 | 365479 | Magnesium transporter MRS2-like protein | AGI-09 | 85.810 | |||||||||||
| Tf0028 | - | - | - | - | - | - | SI377 | Ciclev10022572m | scaffold_3 | 19780711 | 19782241 | C_unshiu_00443:mRNA_20.1 | C_unshiu_00443 | 195567 | 202424 | MADS-box transcription factor | ||||||||||||
| Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | Ciclev10008410m | scaffold_1 | 10946316 | 10949617 | C_unshiu_00201:mRNA_19.1 | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
| Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | Ciclev10004730m | scaffold_9 | 22728310 | 22730086 | C_unshiu_00295:mRNA_17.1 | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
| Fb0143 | - | - | - | - | - | - | SI361 | Ciclev10007397m | scaffold_1 | 25283807 | 25291472 | C_unshiu_00150:mRNA_43.1 | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
| Cp0039 | O | - | - | - | - | - | Ciclev10032929m | scaffold_4 | 1549679 | 1551396 | C_unshiu_00012:mRNA_98.1 | C_unshiu_00012 | 722822 | 724539 | LOB domain-containing protein 12 | AGI-07 | 11.882 | |||||||||||
| Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028247m | scaffold_8 | 2561845 | 2563605 | C_unshiu_00363:mRNA_2.1 | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
| Al0517 | AAvailable marker | - | - | - | - | O | O | Ciclev10028293m | scaffold_8 | 2572439 | 2574295 | C_unshiu_00363:mRNA_1.1 | C_unshiu_00363 | 5892 | 7583 | Limonoid glucosyltransferase | AGI-08 | 74.016 | JtR-08 | 15.435 | ||||||||
| Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | C_unshiu_00564:mRNA_19.1 | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
| Edw002 | - | - | - | - | - | - | Ciclev10029316m | scaffold_8 | 2012329 | 2014782 | C_unshiu_00024:mRNA_48.2 | C_unshiu_00024 | 335678 | 337129 | LIM transcription factor | AGI-08 | 77.720 | |||||||||||
| Cp1533 | - | - | - | - | - | - | Ciclev10021868m | scaffold_3 | 4831751 | 4834270 | C_unshiu_00768:mRNA_14.1 | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
| Cp1268 | - | - | - | - | - | - | Ciclev10021861m | scaffold_3 | 7327436 | 7329167 | C_unshiu_00199:mRNA_13.1 | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
| Cp0748 | - | - | - | - | - | - | Ciclev10022288m | scaffold_3 | 34673451 | 34674900 | C_unshiu_00669:mRNA_14.1 | C_unshiu_00669 | 103814 | 104779 | Light-dependent short hypocotyls protein | AGI-01 | 33.562 | |||||||||||
| Vt0032 | O | - | - | - | - | - | SI024 | Ciclev10024737m | scaffold_7 | 17901487 | 17905433 | C_unshiu_00382:mRNA_15.1 | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
| Tf0081 | - | - | - | - | - | - | SI038,SI324 | Ciclev10021980m | scaffold_3 | 38214468 | 38216861 | C_unshiu_00575:mRNA_8.1 | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
| Mf0047 | DDominant marker | - | - | - | - | - | - | Ciclev10006308m | scaffold_9 | 1685407 | 1687081 | C_unshiu_00036:mRNA_24.2 | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
| Ov0310 | - | - | - | - | - | - | Ciclev10023404m | scaffold_3 | 48463395 | 48465325 | C_unshiu_00026:mRNA_46.1 | C_unshiu_00026 | 334715 | 336716 | Lanatoside 15-O-acetylesterase | KmG-01 | 21.291 | JtR-01S | 61.287 | |||||||||
| Af1556 | - | - | - | - | - | - | Ciclev10026643m | scaffold_7 | 11107041 | 11109191 | C_unshiu_01501:mRNA_6.1 | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
| Ov0311 | - | - | - | - | - | - | Ciclev10022001m | scaffold_3 | 18341166 | 18342395 | C_unshiu_00417:mRNA_9.1 | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
| Cp2190 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028681m | scaffold_8 | 24416582 | 24418982 | C_unshiu_00021:mRNA_82.1 | C_unshiu_00021 | 526890 | 529253 | Kinase PfkB | AGI-08 | 13.780 | ||||||||||
| Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | Ciclev10015483m | scaffold_2 | 35212691 | 35214865 | C_unshiu_00048:mRNA_50.1 | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
| Al0630 | AAvailable marker | O | - | - | - | - | O | Ciclev10008681m | scaffold_1 | 487184 | 489198 | C_unshiu_00129:mRNA_38.1 | C_unshiu_00129 | 342865 | 344872 | Kelch repeat-containing F-box family protein | RP-01 | 1.092 | ||||||||||
| Cp0975 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10012312m | scaffold_6 | 7924189 | 7928192 | C_unshiu_00631:mRNA_15.1 | C_unshiu_00631 | 149702 | 153660 | Isopentenyl pyrophosphate isomerase | AGI-07 | 29.152 | ||||||||||
| Bf0218 | O | - | - | - | - | - | SI232 | Ciclev10000452m | scaffold_5 | 36036990 | 36048487 | C_unshiu_00406:mRNA_20.1 | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
| Cp1044 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10015927m | scaffold_2 | 4354278 | 4358516 | C_unshiu_00062:mRNA_38.1 | C_unshiu_00062 | 326045 | 332995 | Iron-sulfur cluster formation ABC transporter ATP-binding subunit | AGI-07 | 39.420 | ||||||||||
| Al0639 | AAvailable marker | O | - | - | - | O | O | Ciclev10001091m | scaffold_5 | 41703787 | 41708779 | C_unshiu_00009:mRNA_141.1 | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
| Ks9001 | - | - | - | - | - | - | Ciclev10008207m | scaffold_1 | 24548109 | 24552107 | C_unshiu_00047:mRNA_72.1 | C_unshiu_00047 | 475125 | 488565 | Inter-alpha-trypsin inhibitor heavy chain-related isoform 1 | AGI-01 | 27.192 | JtR-01S | 61.287 | |||||||||
| Cp0719 | - | - | - | - | - | - | Ciclev10028417m | scaffold_8 | 23257043 | 23262019 | C_unshiu_02393:mRNA_2.1 | C_unshiu_02393 | 18637 | 23537 | Inner membrane protein ALBINO3 | AGI-08 | 12.793 | |||||||||||
| Tf0166 | - | - | - | - | - | - | SI156 | Ciclev10000524m | scaffold_5 | 19682579 | 19686163 | C_unshiu_00050:mRNA_13.1 | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
| Fb0357 | O | - | - | - | - | - | SI384 | Ciclev10001633m | scaffold_5 | 40550222 | 40554434 | C_unshiu_00889:mRNA_6.1 | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
| Bf0183 | O | - | - | - | - | - | SI308 | Ciclev10005208m | scaffold_9 | 5254416 | 5256826 | C_unshiu_01106:mRNA_9.1 | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
| Fb0365 | O | - | - | - | - | - | SI036,SI320 | Ciclev10026391m | scaffold_7 | 20872462 | 20874659 | C_unshiu_00098:mRNA_41.1 | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
| Af0004 | O | - | - | - | - | - | Ciclev10025125m | scaffold_7 | 8447414 | 8453714 | C_unshiu_00290:mRNA_10.1 | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
| Tf0173 | O | - | - | - | - | - | Ciclev10015413m | scaffold_2 | 26097343 | 26099320 | C_unshiu_00259:mRNA_35.1 | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
| Tf0176 | - | - | - | - | - | - | Ciclev10008476m | scaffold_1 | 385469 | 388179 | C_unshiu_00003:mRNA_163.1 | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | RP-01 | ||||||||||||
| Tf0177 | - | - | - | - | - | - | SI133 | Ciclev10008476m | scaffold_1 | 385469 | 388179 | C_unshiu_00003:mRNA_163.1 | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | ||||||||||||
| Tf0455 | OOthers | O | - | - | - | - | - | Ciclev10017004m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
| Af0015 | - | - | - | - | - | - | Ciclev10019449m | scaffold_3 | 44021779 | 44027536 | C_unshiu_00217:mRNA_10.1 | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
| Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | Ciclev10000046m | scaffold_5 | 41184180 | 41190033 | C_unshiu_00127:mRNA_46.1 | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
| Af0016 | - | - | - | - | - | - | Ciclev10022861m | scaffold_3 | 25074163 | 25075916 | C_unshiu_00117:mRNA_7.1 | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Bf0221 | - | - | - | - | - | - | Ciclev10005970m | scaffold_9 | 24195180 | 24198282 | C_unshiu_00132:mRNA_22.1 | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
| Al0240 | AAvailable marker | - | - | - | - | O | O | Ciclev10028497m | scaffold_8 | 8033465 | 8038415 | C_unshiu_00682:mRNA_9.1 | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
| Ov0324 | AAvailable marker | - | - | - | - | - | O | Ciclev10030198m | scaffold_8 | 22575845 | 22578398 | C_unshiu_01619:mRNA_6.1 | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
| Tf0196 | - | - | - | - | - | - | Ciclev10025815m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
| Af1011 | O | - | - | - | - | - | Ciclev10013781m | scaffold_6 | 25306829 | 25315243 | C_unshiu_00009:mRNA_53.1 | C_unshiu_00009 | 289462 | 299397 | Hypothetical protein | RP-04 | 60.491 | |||||||||||
| Fb2130 | - | - | - | - | - | - | SI069,SI117 | Ciclev10030030m | scaffold_8 | 24341129 | 24344795 | C_unshiu_00021:mRNA_68.1 | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
| Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | Ciclev10026412m | scaffold_7 | 815904 | 817239 | C_unshiu_00353:mRNA_13.1 | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
| Vt0003 | - | - | - | - | - | - | Ciclev10027667m | scaffold_8 | 8153660 | 8174407 | C_unshiu_00616:mRNA_3.1 | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Bf0413 | - | - | - | - | - | - | C_unshiu_00293:mRNA_16.1 | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
| Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | Ciclev10028631m | scaffold_8 | 24315720 | 24317671 | C_unshiu_00021:mRNA_65.1 | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
| Al0309 | AAvailable marker | O | - | - | - | - | O | Ciclev10022019m | scaffold_3 | 44900059 | 44900865 | C_unshiu_00069:mRNA_47.1 | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
| Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10023016m | scaffold_3 | 42954362 | 42955051 | C_unshiu_00152:mRNA_28.1 | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
| Ov0427 | - | - | - | - | - | - | Ciclev10009427m | scaffold_1 | 2156679 | 2158871 | C_unshiu_00553:mRNA_14.1 | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
| Bf1204 | - | - | - | - | - | - | SI364 | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
| Bf1207 | - | - | - | - | - | - | Ciclev10010835m | scaffold_1 | 22912695 | 22913798 | C_unshiu_00103:mRNA_59.1 | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
| Gn0002 | - | - | - | - | - | - | Ciclev10032697m | scaffold_4 | 3335945 | 3338632 | C_unshiu_00465:mRNA_12.1 | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
| Ov0502 | - | - | - | - | - | - | C_unshiu_01254:mRNA_7.1 | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
| Vt0028 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
| Af1321 | - | - | - | - | - | - | Ciclev10009751m | scaffold_1 | 16371168 | 16375666 | C_unshiu_00108:mRNA_25.1 | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
| Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10029315m | scaffold_8 | 20424287 | 20425903 | C_unshiu_00320:mRNA_1.2 | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
| Af1052 | O | - | - | - | - | - | Ciclev10004444m | scaffold_9 | 12808154 | 12820311 | C_unshiu_00508:mRNA_9.1 | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Cp1523 | AAvailable marker | - | - | - | - | O | O | Ciclev10005519m | scaffold_9 | 1356758 | 1359310 | C_unshiu_01431:mRNA_7.1 | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
| Ov0513 | OOthers | O | - | - | - | - | - | Ciclev10011622m | scaffold_6 | 25349417 | 25351949 | C_unshiu_00009:mRNA_59.1 | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
| Al0331 | AAvailable marker | - | - | - | - | - | O | Ciclev10033190m | scaffold_4 | 8406632 | 8407188 | C_unshiu_00111:mRNA_9.1 | C_unshiu_00111 | 83531 | 84087 | Hypothetical protein | KmG-09 | 9.593 | JtR-07 | 52.611 | RP-07 | 19.079 | ||||||
| Tf0245 | - | - | - | - | - | - | SI021 | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | ||||||||||||
| Al0401 | OOthers | O | - | - | - | - | - | Ciclev10025346m | scaffold_7 | 13180567 | 13191638 | C_unshiu_01698:mRNA_6.1 | C_unshiu_01698 | 39336 | 40206 | Hypothetical protein | KmG-02 | 26.204 | JtR-02 | -6.043 | NAT-02S | 22.960 | ||||||
| Tf0254 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10010885m | scaffold_6 | 23916876 | 23939827 | C_unshiu_00253:mRNA_3.1 | C_unshiu_00253 | 14647 | 20586 | Hypothetical protein | AGI-04 | 38.226 | ||||||||||
| Cp0047 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10021599m | scaffold_3 | 40918148 | 40922656 | C_unshiu_00735:mRNA_16.1 | C_unshiu_00735 | 120088 | 124350 | Hypothetical protein | AGI-05 | 48.590 | ||||||||||
| Lp0220 | O | - | - | - | - | - | Ciclev10000749m | scaffold_5 | 39221210 | 39227401 | C_unshiu_00495:mRNA_21.1 | C_unshiu_00495 | 125230 | 136174 | Hypothetical protein | AGI-07 | 14.968 | |||||||||||
| Af1084 | - | - | - | - | - | - | Ciclev10008467m | scaffold_1 | 25716862 | 25720071 | C_unshiu_00066:mRNA_57.1 | C_unshiu_00066 | 369928 | 382143 | Hypothetical protein | AGI-01 | 24.643 | |||||||||||
| Al0419 | OOthers | O | - | - | - | - | - | Ciclev10005894m | scaffold_9 | 2452853 | 2455181 | C_unshiu_00394:mRNA_25.1 | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
| Tf0003.2 | OOthers | O | - | - | - | - | - | Ciclev10002471m | scaffold_5 | 37808878 | 37811097 | C_unshiu_00238:mRNA_14.1 | C_unshiu_00238 | 116142 | 129209 | Hypothetical protein | AGI-09 | 44.054 | ||||||||||
| Af1362 | - | - | - | - | - | - | Ciclev10027931m | scaffold_8 | 2888992 | 2895645 | C_unshiu_00152:mRNA_9.1 | C_unshiu_00152 | 72564 | 86513 | Hypothetical protein | AGI-08 | 80.366 | |||||||||||
| Gn0058 | - | - | - | - | - | - | Ciclev10029531m | scaffold_8 | 11297754 | 11299510 | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-08 | 59.107 | |||||||||||
| Tf0011.2 | OOthers | O | - | - | - | - | - | Ciclev10018614m | scaffold_3 | 11078798 | 11089090 | C_unshiu_02207:mRNA_3.1 | C_unshiu_02207 | 9802 | 19021 | Hypothetical protein | AGI-05 | 42.191 | ||||||||||
| Wy0039 | AAvailable marker | - | - | - | - | O | O | Ciclev10028965m | scaffold_8 | 18824262 | 18825514 | C_unshiu_00459:mRNA_4.1 | C_unshiu_00459 | 34475 | 34918 | Hypothetical protein | AGI-08 | 45.276 | JtR-08 | 16.276 | ||||||||
| Wy0040 | AAvailable marker | O | - | - | - | - | O | Ciclev10011622m | scaffold_6 | 25349417 | 25351949 | C_unshiu_00001:mRNA_217.1 | C_unshiu_00001 | 1378378 | 1380557 | Hypothetical protein | KmG-04 | 12.855 | ||||||||||
| Wy0044.3 | - | - | - | - | - | - | Ciclev10020328m | scaffold_3 | 49621665 | 49623875 | C_unshiu_00126:mRNA_45.1 | C_unshiu_00126 | 300225 | 314275 | Hypothetical protein | RP-05 | 49.102 | |||||||||||
| Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | Ciclev10031723m | scaffold_4 | 115362 | 118025 | C_unshiu_02038:mRNA_4.1 | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
| Al0602 | AAvailable marker | - | - | - | - | - | O | Ciclev10017248m | scaffold_2 | 27141148 | 27141869 | C_unshiu_00017:mRNA_42.1 | C_unshiu_00017 | 304994 | 305523 | Hypothetical protein | KmG-06 | 18.450 | JtR-06S | 3.805 | ||||||||
| Af1398 | - | - | - | - | - | - | Ciclev10030393m | scaffold_8 | 7899376 | 7902959 | C_unshiu_00887:mRNA_6.1 | C_unshiu_00887 | 49120 | 57547 | Hypothetical protein | AGI-08 | 57.551 | |||||||||||
| Mf0033 | AAvailable marker | - | - | - | - | O | O | Ciclev10010044m | scaffold_1 | 6227617 | 6228389 | C_unshiu_00075:mRNA_11.1 | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
| Tf0042.2 | AAvailable marker | O | - | - | - | - | O | Ciclev10016820m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | ||||||||||||
| Cp0278 | - | - | - | - | - | - | Ciclev10022561m | scaffold_3 | 24750794 | 24752907 | C_unshiu_00286:mRNA_8.1 | C_unshiu_00286 | 73068 | 81236 | Hypothetical protein | AGI-04 | 122.142 | |||||||||||
| Tf0054 | O | - | - | - | - | - | SI238 | Ciclev10000100m | scaffold_5 | 43108998 | 43114214 | C_unshiu_01422:mRNA_2.1 | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
| Al0620 | OOthers | - | - | - | - | - | - | Ciclev10025816m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | KmG-02 | 36.964 | JtR-02 | 17.013 | ||||||||
| Cp0321 | AAvailable marker | - | - | - | - | - | O | Ciclev10026722m | scaffold_7 | 8898626 | 8899984 | C_unshiu_00221:mRNA_33.1 | C_unshiu_00221 | 211111 | 214358 | Hypothetical protein | ||||||||||||
| Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10025875m | scaffold_7 | 4575503 | 4577125 | C_unshiu_00656:mRNA_8.1 | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
| Af1685 | - | - | - | - | - | - | Ciclev10023782m | scaffold_3 | 40086985 | 40089114 | C_unshiu_00335:mRNA_9.1 | C_unshiu_00335 | 76164 | 77436 | Hypothetical protein | AGI-05 | 56.481 | |||||||||||
| Mf0055 | DDominant marker | - | - | - | - | O | O | Ciclev10022212m | scaffold_3 | 45551345 | 45552620 | C_unshiu_01674:mRNA_4.1 | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
| Af1690 | - | - | - | - | - | - | Ciclev10032651m | scaffold_4 | 23923757 | 23925178 | C_unshiu_00001:mRNA_137.1 | C_unshiu_00001 | 920379 | 924128 | Hypothetical protein | AGI-07 | 77.752 | |||||||||||
| Mf0060 | - | - | - | - | - | - | C_unshiu_00715:mRNA_6.1 | C_unshiu_00715 | 29601 | 30242 | Hypothetical protein | JtR-07 | 56.497 | |||||||||||||||
| If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | C_unshiu_00046:mRNA_66.1 | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
| If0207 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_01172:mRNA_2.1 | C_unshiu_01172 | 28413 | 28712 | Hypothetical protein | AGI-07 | 45.716 | ||||||||||||||
| Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | Ciclev10017346m | scaffold_2 | 3067337 | 3069249 | C_unshiu_00246:mRNA_8.1 | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
| If0216 | OOthers | O | - | - | - | - | - | SI174 | Ciclev10015257m | scaffold_2 | 12876952 | 12881843 | C_unshiu_01838:mRNA_2.1 | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
| Mf0072 | AAvailable marker | - | - | - | - | O | O | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
| Mf0073 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_00069:mRNA_5.1 | C_unshiu_00069 | 25589 | 28375 | Hypothetical protein | JtR-05 | 38.749 | NAT-05 | 44.567 | ||||||||||||
| If0220 | AAvailable marker | - | - | - | - | - | O | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_15.1 | C_unshiu_00457 | 99488 | 99913 | Hypothetical protein | ||||||||||||
| Cp2263 | AAvailable marker | - | - | - | - | O | O | Ciclev10026034m | scaffold_7 | 2586384 | 2588513 | C_unshiu_00025:mRNA_69.1 | C_unshiu_00025 | 530588 | 532071 | Hypothetical protein | AGI-02 | 70.082 | ||||||||||
| Af1453 | - | - | - | - | - | - | Ciclev10023068m | scaffold_3 | 4663211 | 4664667 | C_unshiu_01589:mRNA_7.1 | C_unshiu_01589 | 29063 | 37936 | Hypothetical protein | AGI-05 | 27.956 | |||||||||||
| Ks9013 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | KmG-07 | 45.284 | JtR-07 | 39.119 | |||||||||
| Tf0370 | - | - | - | - | - | - | Ciclev10019820m | scaffold_3 | 47121093 | 47124518 | C_unshiu_00023:mRNA_20.1 | C_unshiu_00023 | 123134 | 131389 | Hypothetical protein | AGI-05 | 69.117 | |||||||||||
| Tf0371 | - | - | - | - | - | - | Ciclev10002081m | scaffold_5 | 20377552 | 20384333 | C_unshiu_00913:mRNA_4.1 | C_unshiu_00913 | 37450 | 43326 | Hypothetical protein | AGI-09 | 102.280 | |||||||||||
| Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | Ciclev10018252m | scaffold_2 | 27774863 | 27778271 | C_unshiu_00745:mRNA_6.1 | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
| Af1462 | - | - | - | - | - | - | Ciclev10012884m | scaffold_6 | 24274031 | 24276658 | C_unshiu_00133:mRNA_50.1 | C_unshiu_00133 | 274230 | 284897 | Hypothetical protein | AGI-04 | 37.527 | |||||||||||
| Cp0634 | - | - | - | - | - | - | Ciclev10031740m | scaffold_4 | 15660463 | 15665838 | C_unshiu_00824:mRNA_8.1 | C_unshiu_00824 | 96745 | 119992 | Hypothetical protein | AGI-07 | 32.589 | |||||||||||
| Al0001 | - | - | - | - | - | - | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-03 | 62.228 | JtR-031 | 17.616 | |||||||||||||
| Bf0101 | - | - | - | - | - | - | Ciclev10003680m | scaffold_5 | 32917826 | 32924241 | C_unshiu_00229:mRNA_13.1 | C_unshiu_00229 | 57438 | 62744 | Hypothetical protein | NAT-09 | 50.353 | |||||||||||
| Tf0119 | AAvailable marker | - | - | - | - | O | O | Ciclev10014416m | scaffold_2 | 35564238 | 35570619 | C_unshiu_01497:mRNA_5.1 | C_unshiu_01497 | 20297 | 33375 | Hypothetical protein | AGI-06 | 19.002 | ||||||||||
| Fb0133 | - | - | - | - | - | - | C_unshiu_00195:mRNA_19.1 | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
| Tf0122 | - | - | - | - | - | - | Ciclev10020009m | scaffold_3 | 24620623 | 24627357 | C_unshiu_02869:mRNA_1.1 | C_unshiu_02869 | 1885 | 10204 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | Ciclev10019665m | scaffold_3 | 50861813 | 50866146 | C_unshiu_00206:mRNA_42.1 | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
| Fb0180 | - | - | - | - | - | - | SI209 | Ciclev10005370m | scaffold_9 | 27734482 | 27736035 | C_unshiu_00252:mRNA_1.1 | C_unshiu_00252 | 12109 | 13626 | Hypothetical protein | RP-03 | 56.919 | ||||||||||
| Bf0128 | O | - | - | - | - | - | Ciclev10025298m | scaffold_7 | 3323269 | 3331038 | C_unshiu_00051:mRNA_2.2 | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
| Fb0237 | - | - | - | - | - | - | Ciclev10007227m | scaffold_1 | 23487200 | 23497316 | C_unshiu_00338:mRNA_20.1 | C_unshiu_00338 | 134033 | 144369 | Hypothetical protein | AGI-01 | 28.325 | |||||||||||
| Fb0246 | - | - | - | - | - | - | Ciclev10029680m | scaffold_8 | 2403492 | 2406922 | C_unshiu_00363:mRNA_27.1 | C_unshiu_00363 | 170901 | 174318 | Hypothetical protein | AGI-08 | 80.078 | |||||||||||
| Cp0933 | OOthers | - | - | - | - | - | - | Ciclev10019734m | scaffold_3 | 49821906 | 49825730 | C_unshiu_00014:mRNA_26.1 | C_unshiu_00014 | 159299 | 162719 | Hypothetical protein | AGI-03 | 47.283 | ||||||||||
| Ov0116 | - | - | - | - | - | - | Ciclev10032931m | scaffold_4 | 3193875 | 3196468 | C_unshiu_00342:mRNA_22.1 | C_unshiu_00342 | 154980 | 164222 | Hypothetical protein | KmG-02 | 53.208 | JtR-02 | 27.051 | RP-02.2 | 5.192 | |||||||
| Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | Ciclev10010926m | scaffold_6 | 19105139 | 19113780 | C_unshiu_00089:mRNA_17.1 | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
| Fb0293 | - | - | - | - | - | - | SI198,SI374 | C_unshiu_00152:mRNA_37.1 | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
| Cp0974 | - | - | - | - | - | - | Ciclev10011578m | scaffold_6 | 8029488 | 8035109 | C_unshiu_00711:mRNA_6.1 | C_unshiu_00711 | 128510 | 138133 | Hypothetical protein | AGI-04 | 107.018 | |||||||||||
| Fb0296 | - | - | - | - | - | - | Ciclev10014378m | scaffold_2 | 22689124 | 22695586 | C_unshiu_01495:mRNA_8.1 | C_unshiu_01495 | 60336 | 62557 | Hypothetical protein | RP-06.1 | 10.382 | |||||||||||
| Al0209 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | KmG-01 | 37.230 | JtR-01S | 88.382 | ||||||||
| Af1509 | - | - | - | - | - | - | Ciclev10032314m | scaffold_4 | 23564251 | 23568956 | C_unshiu_00001:mRNA_83.3 | C_unshiu_00001 | 555659 | 560336 | Hypersensitive-induced response protein 1 | AGI-07 | 73.796 | |||||||||||
| Ov0404 | AAvailable marker | - | - | - | - | - | O | Ciclev10002415m | scaffold_5 | 29768091 | 29769281 | C_unshiu_00731:mRNA_6.3 | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
| Wy0026 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10010857m | scaffold_1 | 28321342 | 28323314 | C_unshiu_02224:mRNA_5.1 | C_unshiu_02224 | 30176 | 31684 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AGI-01 | 35.518 | ||||||||||
| Cp0603 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10028998m | scaffold_8 | 2349655 | 2354496 | C_unshiu_00363:mRNA_34.1 | C_unshiu_00363 | 217631 | 222409 | Hop-interacting protein THI043 | AGI-08 | 75.684 | ||||||||||
| Tf0075 | - | - | - | - | - | - | SI059,SI248 | Ciclev10010972m | scaffold_6 | 19142307 | 19156510 | C_unshiu_00089:mRNA_11.1 | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
| Tf0203 | - | - | - | - | - | - | SI121 | Ciclev10014039m | scaffold_2 | 10459593 | 10472483 | C_unshiu_00403:mRNA_13.1 | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
| Tf0198 | AAvailable marker | O | - | - | - | - | O | Ciclev10032275m | scaffold_4 | 23695766 | 23697703 | C_unshiu_00001:mRNA_105.2 | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | ||||||||||||
| Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | Ciclev10032275m | scaffold_4 | 23695766 | 23697703 | C_unshiu_00001:mRNA_105.2 | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
| Gn0041 | AAvailable marker | - | - | - | - | - | O | C_unshiu_00123:mRNA_16.1 | C_unshiu_00123 | 116817 | 119061 | Homeobox-leucine zipper protein HAT5 | KmG-05S | 9.772 | JtR-05 | 28.396 | ||||||||||||
| Wy0018 | AAvailable marker | - | - | - | - | O | O | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
| Tf0301 | - | - | - | - | - | - | SI182 | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | ||||||||||||
| Tf0265 | - | - | - | - | - | - | SI197 | Ciclev10019232m | scaffold_3 | 49318106 | 49324231 | C_unshiu_00018:mRNA_126.1 | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
| Tf0363 | - | - | - | - | - | - | SI002,SI096 | Ciclev10019714m | scaffold_3 | 49318106 | 49324231 | C_unshiu_00018:mRNA_126.1 | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
| Tf0045 | - | - | - | - | - | - | SI303,SI321 | Ciclev10032837m | scaffold_4 | 23496020 | 23497466 | C_unshiu_00001:mRNA_74.1 | C_unshiu_00001 | 490607 | 491890 | Homeobox transcription factor | AGI-07 | 74.573 | ||||||||||
| Tf0020 | - | - | - | - | - | - | SI154 | Ciclev10026414m | scaffold_7 | 2289455 | 2291216 | C_unshiu_00025:mRNA_31.1 | C_unshiu_00025 | 258446 | 260200 | Homeobox leucine zipper protein | AGI-02 | 71.294 | ||||||||||
| Tf0375 | - | - | - | - | - | - | Ciclev10022365m | scaffold_3 | 13034654 | 13036082 | C_unshiu_00020:mRNA_62.1 | C_unshiu_00020 | 527751 | 528816 | Homeobox leucine zipper protein | AGI-05 | 40.558 | |||||||||||
| Fb1916 | - | - | - | - | - | - | SI336 | Ciclev10016275m | scaffold_2 | 12043969 | 12046230 | C_unshiu_00026:mRNA_12.1 | C_unshiu_00026 | 110679 | 112686 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 | RP-06.1 | 24.027 | ||||||||||
| Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | Ciclev10024695m | scaffold_7 | 2501520 | 2509737 | C_unshiu_02417:mRNA_1.1 | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
| Tf0232 | - | - | - | - | - | - | SI258,SI261 | Ciclev10001105m | scaffold_5 | 37066208 | 37070717 | C_unshiu_00773:mRNA_3.1 | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
| Af1345 | - | - | - | - | - | - | Ciclev10013023m | scaffold_6 | 13082313 | 13084012 | C_unshiu_01022:mRNA_2.1 | C_unshiu_01022 | 8566 | 10161 | Histone H2A | AGI-08 | 93.624 | |||||||||||
| Mf0041 | AAvailable marker | - | - | - | - | O | O | Ciclev10022012m | scaffold_3 | 45076821 | 45080633 | C_unshiu_00069:mRNA_16.1 | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
| Tf0343 | AtAvailable marker | O | - | - | - | O | O | Ciclev10016587m | scaffold_2 | 29204680 | 29206501 | C_unshiu_00022:mRNA_67.1 | C_unshiu_00022 | 489282 | 490950 | High mobility group B protein 7 | AGI-06 | 44.393 | ||||||||||
| Al0525 | OOthers | O | - | - | - | - | - | Ciclev10026706m | scaffold_7 | 252320 | 254023 | C_unshiu_00312:mRNA_20.2 | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
| Vt0015 | - | - | - | - | - | - | Ciclev10025952m | scaffold_7 | 2441452 | 2443391 | C_unshiu_00025:mRNA_49.1 | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
| Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
| Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
| Af1498 | - | - | - | - | - | - | Ciclev10006723m | scaffold_9 | 6766349 | 6768025 | C_unshiu_00307:mRNA_26.2 | C_unshiu_00307 | 212314 | 218407 | Heterogeneous nuclear ribonucleoprotein 1 | AGI-03 | 46.274 | |||||||||||
| Tf0072 | - | - | - | - | - | - | Ciclev10005403m | scaffold_9 | 28757274 | 28759075 | C_unshiu_00045:mRNA_48.1 | C_unshiu_00045 | 372168 | 373811 | Heat stress transcription factor B-4 | AGI-03 | 35.962 | |||||||||||
| Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | Ciclev10021287m | scaffold_3 | 7047024 | 7049430 | C_unshiu_00425:mRNA_7.1 | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
| Tf0263 | - | - | - | - | - | - | SI013 | Ciclev10008768m | scaffold_1 | 6358030 | 6359568 | C_unshiu_00075:mRNA_22.1 | C_unshiu_00075 | 227733 | 229211 | Heat shock transcription factor A7a1 | ||||||||||||
| Tf0068 | - | - | - | - | - | - | SI106 | Ciclev10020724m | scaffold_3 | 44141305 | 44144453 | C_unshiu_00217:mRNA_25.1 | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
| Fb0207 | - | - | - | - | - | - | Ciclev10006449m | scaffold_9 | 3771162 | 3771725 | C_unshiu_00254:mRNA_35.1 | C_unshiu_00254 | 237120 | 239518 | Heat shock 22 kDa protein | RP-03 | 21.444 | |||||||||||
| Tf0071 | - | - | - | - | - | - | SI084,SI146 | Ciclev10022102m | scaffold_3 | 26610747 | 26612959 | C_unshiu_00167:mRNA_6.1 | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
| Bf0020 | - | - | - | - | - | - | Ciclev10005107m | scaffold_9 | 25185200 | 25188839 | C_unshiu_00119:mRNA_25.1 | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
| Bf0036 | AAvailable marker | O | O | - | O | O | O | Ciclev10008751m | scaffold_1 | 22840947 | 22844111 | C_unshiu_00103:mRNA_45.1 | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
| Vt0029 | - | - | - | - | - | - | Ciclev10031975m | scaffold_4 | 2451345 | 2454325 | C_unshiu_00979:mRNA_17.1 | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
| Af1586 | - | - | - | - | - | - | Ciclev10005733m | scaffold_9 | 23119502 | 23122347 | C_unshiu_00148:mRNA_17.1 | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
| Af1087 | O | - | - | - | - | - | Ciclev10019689m | scaffold_3 | 24796351 | 24800588 | C_unshiu_00286:mRNA_17.1 | C_unshiu_00286 | 132648 | 135466 | Glycine hydroxymethyltransferase | AGI-05 | 41.306 | |||||||||||
| Af1149 | - | - | - | - | - | - | Ciclev10025360m | scaffold_7 | 12985954 | 12989228 | C_unshiu_02261:mRNA_2.1 | C_unshiu_02261 | 19156 | 21966 | Glycerol kinase | AGI-05 | 21.630 | |||||||||||
| Af1003 | O | - | - | - | - | - | Ciclev10001093m | scaffold_5 | 15605852 | 15610028 | C_unshiu_00533:mRNA_20.1 | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
| Bf0200 | OOthers | - | - | - | - | - | - | SI335 | Ciclev10014367m | scaffold_2 | 29022433 | 29030724 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
| Af1312 | - | - | - | - | - | - | Ciclev10014367m | scaffold_2 | 29022433 | 29030537 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
| Cp0052 | OOthers | O | - | - | - | - | - | C_unshiu_01597:mRNA_11.1 | C_unshiu_01597 | 29471 | 42354 | Glucose-6-phosphate dehydrogenase 4 | AGI-08 | 96.035 | ||||||||||||||
| If0005 | OOthers | - | - | - | - | - | - | Ciclev10032438m | scaffold_4 | 20629463 | 20633356 | C_unshiu_00015:mRNA_81.1 | C_unshiu_00015 | 667011 | 671011 | Glucosamine/galactosamine-6-phosphate isomerase family protein | JtR-07 | 25.458 | NAT-07 | 15.764 | ||||||||
| Af1111 | - | - | - | - | - | - | Ciclev10015086m | scaffold_2 | 23021193 | 23023457 | C_unshiu_00172:mRNA_31.1 | C_unshiu_00172 | 270783 | 273047 | Glucan endo-1,3-beta-glucosidase 13 | AGI-06 | 83.445 | |||||||||||
| Wy0045 | Wy0045.k | - | - | - | - | - | - | Ciclev10028268m | scaffold_8 | 9564698 | 9566326 | C_unshiu_02764:mRNA_1.1 | C_unshiu_02764 | 1529 | 2654 | Geraniol 10-hydroxylase-like protein | AGI-08 | 56.724 | ||||||||||
| Wy0041 | - | - | - | - | - | - | Ciclev10025903m | scaffold_7 | 1295839 | 1297378 | C_unshiu_00218:mRNA_18.1 | C_unshiu_00218 | 93074 | 94183 | GDP-mannose 4,6 dehydratase 2 | AGI-02 | 75.406 | |||||||||||
| Fb0103 | OOthers | O | - | - | - | - | - | SI155 | Ciclev10008255m | scaffold_1 | 22758712 | 22761740 | C_unshiu_00103:mRNA_27.1 | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
| Tf0106 | - | - | - | - | - | - | Ciclev10006161m | scaffold_9 | 1128046 | 1129318 | C_unshiu_00007:mRNA_6.1 | C_unshiu_00007 | 49599 | 50702 | GATA transcription factor 15 | AGI-03 | 7.674 | |||||||||||
| Tf0454 | AAvailable marker | O | - | - | - | O | O | Ciclev10027306m | scaffold_7 | 16108723 | 16113463 | C_unshiu_00371:mRNA_10.1 | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
| Tf0264 | AAvailable marker | O | - | - | - | O | O | Ciclev10015873m | scaffold_2 | 248256 | 250675 | C_unshiu_00109:mRNA_29.1 | C_unshiu_00109 | 175776 | 179005 | GAN | AGI-06 | 103.728 | ||||||||||
| Cp2262 | AAvailable marker | - | - | - | - | - | O | Ciclev10026121m | scaffold_7 | 1870933 | 1874304 | C_unshiu_00289:mRNA_20.1 | C_unshiu_00289 | 113542 | 116894 | Galactose mutarotase-like superfamily protein | ||||||||||||
| Al0635 | AAvailable marker | - | - | - | - | O | O | Ciclev10015354m | scaffold_2 | 26435540 | 26438838 | C_unshiu_00197:mRNA_27.1 | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
| Al0514 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | KmG-04 | 32.217 | ||||||||||
| If0210 | - | - | - | - | - | - | SI042 | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
| Tf0280 | - | - | - | - | - | - | SI158,SI200 | Ciclev10025566m | scaffold_7 | 3429964 | 3433239 | C_unshiu_00301:mRNA_24.3 | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
| Tf0145 | - | - | - | - | - | - | SI092 | Ciclev10022479m | scaffold_3 | 8486491 | 8488997 | C_unshiu_00154:mRNA_7.1 | C_unshiu_00154 | 49131 | 60112 | Floral homeotic protein APETALA 1 | ||||||||||||
| Tf0344 | AAvailable marker | O | - | - | - | O | O | Ciclev10016433m | scaffold_2 | 34624236 | 34631123 | C_unshiu_00002:mRNA_17.1 | C_unshiu_00002 | 124392 | 131264 | Floral homeotic protein AGAMOUS | AGI-06 | 24.216 | ||||||||||
| Wy0034 | - | - | - | - | - | - | SI367 | Ciclev10026310m | scaffold_7 | 2299638 | 2302863 | C_unshiu_00025:mRNA_32.1 | C_unshiu_00025 | 269762 | 270443 | Flavoprotein wrbA | ||||||||||||
| Gn0004 | - | - | - | - | - | - | Ciclev10026028m | scaffold_7 | 6011523 | 6014015 | C_unshiu_00696:mRNA_14.1 | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
| Af1207 | - | - | - | - | - | - | Ciclev10025335m | scaffold_7 | 15605065 | 15607345 | C_unshiu_00628:mRNA_20.1 | C_unshiu_00628 | 144683 | 146646 | Flavonoid 3'-monooxygenase | AGI-02 | 21.344 | |||||||||||
| Bf0147 | - | - | - | - | - | - | SI165 | Ciclev10014858m | scaffold_2 | 5975367 | 5977280 | C_unshiu_00260:mRNA_18.1 | C_unshiu_00260 | 124629 | 126502 | Flavonoid 3'-monooxygenase | RP-06.1 | 47.841 | ||||||||||
| Af1223 | - | - | - | - | - | - | Ciclev10009839m | scaffold_1 | 27111412 | 27114276 | C_unshiu_00347:mRNA_8.1 | C_unshiu_00347 | 66555 | 79401 | Flavin-binding kelch domain F box protein | AGI-09 | 97.668 | |||||||||||
| Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10015934m | scaffold_2 | 35693249 | 35696515 | C_unshiu_00337:mRNA_13.1 | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
| Af1405 | - | - | - | - | - | - | Ciclev10032481m | scaffold_4 | 24503838 | 24505365 | C_unshiu_00001:mRNA_238.1 | C_unshiu_00001 | 1513811 | 1515209 | FH interacting protein 1 | AGI-07 | 83.026 | |||||||||||
| Tf0058 | - | - | - | - | - | - | SI257 | Ciclev10009065m | scaffold_1 | 20885102 | 20889283 | C_unshiu_00395:mRNA_8.2 | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
| Cp0741 | AAvailable marker | O | - | - | - | O | O | Ciclev10008230m | scaffold_1 | 3746864 | 3749903 | C_unshiu_00055:mRNA_22.1 | C_unshiu_00055 | 168281 | 172005 | Ferrochelatase | AGI-01 | 75.964 | ||||||||||
| Bf0189 | - | - | - | - | - | - | C_unshiu_00008:mRNA_66.1 | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
| Cp0065 | O | - | - | - | - | - | Ciclev10002793m | scaffold_5 | 8435123 | 8435971 | C_unshiu_01044:mRNA_2.1 | C_unshiu_01044 | 7117 | 7963 | Ferredoxin | AGI-09 | 86.996 | |||||||||||
| Cp0703 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | AGI-08 | 43.089 | |||||||||||
| Al0018 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | RP-08 | 23.447 | |||||||||||
| Fb0995 | OOthers | O | - | - | - | - | - | SI026 | Ciclev10024677m | scaffold_7 | 1180019 | 1202408 | C_unshiu_00544:mRNA_10.1 | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
| Wy0035 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10014857m | scaffold_2 | 31148849 | 31150616 | C_unshiu_00292:mRNA_13.1 | C_unshiu_00292 | 110620 | 112650 | FAD-binding Berberine family protein | AGI-06 | 36.863 | ||||||||||
| Tf0364 | AAvailable marker | O | - | - | - | O | O | Ciclev10011266m | scaffold_6 | 24606501 | 24612654 | C_unshiu_00135:mRNA_49.1 | C_unshiu_00135 | 338118 | 344273 | FACT complex subunit SSRP1 | AGI-04 | 37.102 | ||||||||||
| Al0408 | O | - | - | - | - | - | Ciclev10031487m | scaffold_4 | 23737757 | 23740513 | C_unshiu_00001:mRNA_109.1 | C_unshiu_00001 | 727392 | 729266 | F-box/kelch-repeat protein SKIP11 | AGI-07 | 75.917 | KmG-07 | 13.235 | JtR-07 | 1.788 | |||||||
| Fb0219 | - | - | - | - | - | - | Ciclev10031436m | scaffold_4 | 21153791 | 21158006 | C_unshiu_00010:mRNA_101.1 | C_unshiu_00010 | 718703 | 722812 | F-box only protein 6 | AGI-03 | 46.274 | |||||||||||
| Bf0130 | - | - | - | - | - | - | SI063,SI188 | Ciclev10004858m | scaffold_9 | 26981498 | 26984277 | C_unshiu_00095:mRNA_24.1 | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
| Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
| Mf0017 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | AGI-05 | 44.674 | ||||||||||
| Wy0030 | AAvailable marker | O | - | - | - | O | O | Ciclev10001854m | scaffold_5 | 36229310 | 36230518 | C_unshiu_00619:mRNA_10.1 | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
| Tf0226 | AAvailable marker | O | - | - | - | - | O | Ciclev10008836m | scaffold_1 | 526813 | 529150 | C_unshiu_00129:mRNA_32.1 | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
| Al0605 | OOthers | - | - | - | - | - | - | Ciclev10022151m | scaffold_3 | 41434064 | 41437122 | C_unshiu_00194:mRNA_5.1 | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
| Al0210 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10025724m | scaffold_7 | 6747139 | 6750382 | C_unshiu_00166:mRNA_28.1 | C_unshiu_00166 | 205256 | 208771 | Eukaryotic initiation factor 4A-10 | KmG-02 | 34.998 | JtR-02 | 15.126 | ||||||||
| Tf0201 | O | - | - | - | - | - | SI195 | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
| Gmom23 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
| Gmom24 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
| Gmom13 | - | - | - | - | - | - | Ciclev10005787m | scaffold_9 | 13223034 | 13225922 | C_unshiu_00620:mRNA_11.2 | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
| Tf0027 | - | - | - | - | - | - | SI046 | Ciclev10026602m | scaffold_7 | 13911684 | 13912447 | C_unshiu_00792:mRNA_11.1 | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
| Tf0351 | - | - | - | - | - | - | SI122 | Ciclev10021622m | scaffold_3 | 43472094 | 43473220 | C_unshiu_00411:mRNA_17.1 | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
| Bf0158 | - | O | - | O | - | - | SI376 | Ciclev10021285m | scaffold_3 | 5253281 | 5254755 | C_unshiu_00795:mRNA_3.1 | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
| Wy0012 | O | - | - | - | - | O | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | KmG-032 | 11.250 | JtR-031 | 4.898 | NAT-03 | 11.970 | |||||||
| Af1414 | - | - | - | - | - | - | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | AGI-03 | 50.895 | |||||||||||
| If0219 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00318:mRNA_17.1 | C_unshiu_00318 | 110550 | 117056 | Esterase | JtR-05 | 13.922 | NAT-05 | 28.283 | ||||||||||||
| Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | Ciclev10016009m | scaffold_2 | 33216839 | 33219042 | C_unshiu_00002:mRNA_211.1 | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
| Mf0052 | - | - | - | - | - | - | Ciclev10005897m | scaffold_9 | 28054214 | 28056032 | C_unshiu_01194:mRNA_11.1 | C_unshiu_01194 | 83573 | 84813 | Envelope glycoprotein | |||||||||||||
| Wy0011 | OOthers | O | - | - | - | - | - | SI091 | Ciclev10032364m | scaffold_4 | 24417602 | 24419019 | C_unshiu_00001:mRNA_226.1 | C_unshiu_00001 | 1429943 | 1431279 | Enoyl CoA hydratase/isomerase | AGI-07 | 86.288 | |||||||||
| Tf0213 | OOthers | O | - | - | - | - | - | Ciclev10030571m | scaffold_4 | 18839546 | 18848948 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
| Tf0251 | - | - | - | - | - | - | SI005 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | ||||||||||||||||
| Cp0160 | - | - | - | - | - | - | Ciclev10019883m | scaffold_3 | 21940551 | 21944032 | C_unshiu_00272:mRNA_20.1 | C_unshiu_00272 | 187755 | 191248 | Endoglucanase | AGI-05 | 41.267 | |||||||||||
| Lp0226 | O | - | - | - | - | - | SI210 | Ciclev10027999m | scaffold_8 | 2831832 | 2837109 | C_unshiu_00152:mRNA_19.1 | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
| Af1416 | - | - | - | - | - | - | Ciclev10029140m | scaffold_8 | 3738607 | 3741747 | C_unshiu_00589:mRNA_10.1 | C_unshiu_00589 | 131180 | 134227 | Embryo defective 1273, putative isoform 1 | AGI-08 | 68.834 | |||||||||||
| Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | Ciclev10004309m | scaffold_9 | 30513333 | 30517676 | C_unshiu_00003:mRNA_13.1 | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
| Al0416 | OOthers | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00639:mRNA_12.1 | C_unshiu_00639 | 90698 | 99467 | Elongation factor 1-alpha | AGI-08 | 23.023 | JtR-07 | 60.405 | NAT-082 | 21.126 | ||||||
| Ov0018 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00082:mRNA_34.1 | C_unshiu_00082 | 267163 | 269630 | Elongation factor 1-alpha | ||||||||||||
| Bf0171 | - | - | - | - | - | - | SI381 | Ciclev10006006m | scaffold_9 | 4116356 | 4117315 | C_unshiu_00101:mRNA_25.1 | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
| Fb0223 | - | - | - | - | - | - | SI240 | C_unshiu_00303:mRNA_13.1 | C_unshiu_00303 | 108935 | 110191 | E3 ubiquitin-protein ligase ATL6 | RP-08 | 15.967 | ||||||||||||||
| Cp0431 | AAvailable marker | O | - | - | - | O | O | Ciclev10015731m | scaffold_2 | 27084177 | 27089027 | C_unshiu_00017:mRNA_35.1 | C_unshiu_00017 | 248152 | 252850 | E3 ubiquitin protein ligase RIE1 | AGI-06 | 60.660 | ||||||||||
| Ov0515 | - | - | - | - | - | - | Ciclev10020337m | scaffold_3 | 14878427 | 14882285 | C_unshiu_01955:mRNA_4.1 | C_unshiu_01955 | 21970 | 26584 | DUF760 family protein | KmG-01 | 40.558 | |||||||||||
| Wy0059 | Wy0059.em | - | - | - | - | - | - | Ciclev10012904m | scaffold_6 | 8562431 | 8564865 | C_unshiu_00232:mRNA_33.1 | C_unshiu_00232 | 292640 | 294683 | DUF538 family protein | AGI-08 | 91.502 | ||||||||||
| Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028879m | scaffold_8 | 19397294 | 19398741 | C_unshiu_02034:mRNA_3.1 | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
| Cp0057 | - | - | - | - | - | - | Ciclev10031335m | scaffold_4 | 24227703 | 24230754 | C_unshiu_00001:mRNA_187.1 | C_unshiu_00001 | 1244353 | 1247404 | DUF1336 family protein | AGI-07 | 79.269 | |||||||||||
| Gn0049 | - | - | - | - | - | - | Ciclev10028366m | scaffold_8 | 1604460 | 1606311 | C_unshiu_00024:mRNA_95.1 | C_unshiu_00024 | 699386 | 701126 | DUF1005 family protein | AGI-08 | 77.688 | JtR-08 | 17.757 | |||||||||
| Cp0114 | - | - | - | - | - | - | Ciclev10027515m | scaffold_7 | 15446269 | 15449214 | C_unshiu_01960:mRNA_1.1 | C_unshiu_01960 | 1400 | 4642 | DS12 from 2D-PAGE of leaf protein, putative | AGI-02 | 21.337 | |||||||||||
| Af1482 | - | - | - | - | - | - | Ciclev10001945m | scaffold_5 | 36550507 | 36552800 | C_unshiu_00657:mRNA_2.2 | C_unshiu_00657 | 28541 | 30831 | DRE binding transcription factor | AGI-09 | 49.255 | |||||||||||
| Al0643 | - | - | - | - | - | - | Ciclev10012685m | scaffold_6 | 11126658 | 11131076 | C_unshiu_02977:mRNA_1.1 | C_unshiu_02977 | 1950 | 2673 | Dolichyldiphosphatase 1 | AGI-08 | 56.724 | |||||||||||
| Gn0019 | - | - | - | - | - | - | Ciclev10002883m | scaffold_5 | 26949951 | 26952841 | C_unshiu_02041:mRNA_4.1 | C_unshiu_02041 | 18003 | 20672 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 | KmG-09 | 17.972 | JtR-09S | 22.316 | |||||||||
| Tf0286 | DDominant marker | O | - | - | - | - | - | Ciclev10011556m | scaffold_6 | 25001586 | 25004619 | C_unshiu_01279:mRNA_6.1 | C_unshiu_01279 | 43222 | 46082 | Dof zinc finger protein DOF5.2 | AGI-04 | 32.710 | ||||||||||
| Bf0213 | - | - | - | - | - | - | SI097 | Ciclev10000820m | scaffold_5 | 37693882 | 37699178 | C_unshiu_00238:mRNA_2.1 | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
| Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | Ciclev10015385m | scaffold_2 | 4021167 | 4024377 | C_unshiu_00992:mRNA_13.1 | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
| Af1487 | - | - | - | - | - | - | Ciclev10028531m | scaffold_8 | 18155481 | 18157658 | C_unshiu_00251:mRNA_22.1 | C_unshiu_00251 | 205180 | 207288 | DnaJ | AGI-08 | 47.330 | |||||||||||
| Tf0250 | AAvailable marker | O | - | - | - | O | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | AGI-08 | 73.105 | ||||||||||
| Tf0431 | AAvailable marker | O | - | - | - | - | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | ||||||||||||
| Cp0675 | AAvailable marker | O | - | - | - | O | O | Ciclev10030633m | scaffold_4 | 20294240 | 20301426 | C_unshiu_00015:mRNA_33.1 | C_unshiu_00015 | 302440 | 309360 | DNA-directed RNA polymerase | AGI-07 | 59.793 | ||||||||||
| Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | Ciclev10030023m | scaffold_8 | 2673135 | 2674232 | C_unshiu_00152:mRNA_38.1 | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
| Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | Ciclev10027769m | scaffold_8 | 13408610 | 13413938 | C_unshiu_01226:mRNA_1.1 | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
| Cp0540 | - | - | - | - | - | - | Ciclev10020181m | scaffold_3 | 10427313 | 10435293 | C_unshiu_02340:mRNA_1.1 | C_unshiu_02340 | 2005 | 8306 | DNA repair protein reca, putative | AGI-05 | 42.191 | |||||||||||
| Tf0342 | - | - | - | - | - | - | SI151 | Ciclev10019088m | scaffold_3 | 1649410 | 1655963 | C_unshiu_00343:mRNA_23.1 | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
| Fb1134.2 | - | - | - | - | - | - | Ciclev10030474m | scaffold_4 | 9547707 | 9559498 | C_unshiu_00140:mRNA_14.1 | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
| Al0225 | - | - | - | - | - | - | Ciclev10001539m | scaffold_5 | 41093725 | 41097411 | C_unshiu_01543:mRNA_6.1 | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
| Bf0409 | - | - | - | - | - | - | C_unshiu_00616:mRNA_6.1 | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
| Al0215 | OOthers | - | - | - | - | - | - | Ciclev10007304m | scaffold_1 | 21918726 | 21922966 | C_unshiu_00595:mRNA_18.1 | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
| Ov0313 | OOthers | - | - | - | - | - | - | Ciclev10002372m | scaffold_5 | 41844984 | 41847835 | C_unshiu_00009:mRNA_157.1 | C_unshiu_00009 | 1013478 | 1016014 | Diphthine synthase | KmG-09 | 79.072 | ||||||||||
| Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | Ciclev10001621m | scaffold_5 | 34294853 | 34297359 | C_unshiu_03047:mRNA_1.1 | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
| Tf0124 | - | - | - | - | - | - | Ciclev10007717m | scaffold_1 | 27457358 | 27462893 | C_unshiu_00237:mRNA_37.1 | C_unshiu_00237 | 259818 | 273281 | Dethiobiotin synthase | AGI-01 | 34.062 | |||||||||||
| Af1693 | - | - | - | - | - | - | Ciclev10016657m | scaffold_2 | 32069149 | 32072079 | C_unshiu_00027:mRNA_31.2 | C_unshiu_00027 | 205885 | 208484 | DERLIN-2.2 isoform 1 | AGI-06 | 35.794 | |||||||||||
| Al0003 | Al0003.2 | - | - | - | - | - | - | Ciclev10024637m | scaffold_3 | 41697052 | 41697860 | C_unshiu_01778:mRNA_2.1 | C_unshiu_01778 | 27362 | 28139 | Dehydrin COR15 | AGI-05 | 49.499 | ||||||||||
| Gn0042 | - | - | - | - | - | - | Ciclev10009742m | scaffold_1 | 25370176 | 25371445 | C_unshiu_00498:mRNA_21.1 | C_unshiu_00498 | 140388 | 142383 | Deficiens | JtR-08 | 6.490 | |||||||||||
| Cp0454 | - | - | - | - | - | - | Ciclev10030551m | scaffold_4 | 23200936 | 23206254 | C_unshiu_00001:mRNA_32.1 | C_unshiu_00001 | 214996 | 218740 | DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic | AGI-07 | 73.034 | |||||||||||
| Mf0034 | OOthers | O | - | - | - | - | - | Ciclev10031304m | scaffold_4 | 1559490 | 1563887 | C_unshiu_00012:mRNA_100.1 | C_unshiu_00012 | 732963 | 736971 | DEAD-box ATP-dependent RNA helicase 27 | RP-07 | 73.631 | ||||||||||
| Bf0159 | - | - | - | - | - | - | SI074 | Ciclev10016059m | scaffold_2 | 13502268 | 13505597 | C_unshiu_01990:mRNA_1.1 | C_unshiu_01990 | 10471 | 13748 | DCD (Development and cell death) domain protein | RP-06.1 | 23.326 | ||||||||||
| Cp2208 | AAvailable marker | - | - | - | - | - | O | Ciclev10021564m | scaffold_3 | 7420176 | 7425027 | C_unshiu_00995:mRNA_4.1 | C_unshiu_00995 | 39031 | 43144 | D-ribulose-5-phosphate-3-epimerase isoform 1 | ||||||||||||
| Mf0076 | AAvailable marker | - | - | - | - | O | O | Ciclev10012554m | scaffold_6 | 11704199 | 11706676 | C_unshiu_00207:mRNA_15.1 | C_unshiu_00207 | 132539 | 134984 | Cytosolic ascorbate peroxidase | AGI-08 | 93.624 | ||||||||||
| Cp1709 | AAvailable marker | - | - | - | - | - | O | Ciclev10025382m | scaffold_7 | 1450748 | 1452915 | C_unshiu_00624:mRNA_14.1 | C_unshiu_00624 | 137579 | 139378 | Cytochrome P450 84A1 | ||||||||||||
| Af1096 | - | - | - | - | - | - | Ciclev10020597m | scaffold_3 | 42061488 | 42063267 | C_unshiu_00778:mRNA_10.1 | C_unshiu_00778 | 89741 | 91509 | Cytochrome P450 82A4 | AGI-05 | 51.052 | |||||||||||
| Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10025343m | scaffold_7 | 19024295 | 19026021 | C_unshiu_00468:mRNA_22.1 | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
| Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | Ciclev10019826m | scaffold_3 | 6502231 | 6504139 | C_unshiu_00521:mRNA_1.1 | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
| Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | C_unshiu_00009:mRNA_117.1 | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
| Bf0184 | O | - | - | - | - | - | Ciclev10021248m | scaffold_3 | 24893551 | 24898675 | C_unshiu_00286:mRNA_27.1 | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
| Wy0004 | - | - | - | - | - | - | C_unshiu_02819:mRNA_2.1 | C_unshiu_02819 | 2728 | 4118 | CXE carboxylesterase | AGI-08 | 70.463 | NAT-082 | 65.434 | |||||||||||||
| Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | C_unshiu_00679:mRNA_13.1 | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
| Gn0050 | - | - | - | - | - | - | Ciclev10024602m | scaffold_3 | 5382490 | 5385009 | C_unshiu_00014:mRNA_87.1 | C_unshiu_00014 | 637698 | 638678 | CRT binding factor 3 | AGI-05 | 29.035 | KmG-05S | 21.884 | JtR-05 | 19.008 | |||||||
| Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | Ciclev10022680m | scaffold_3 | 8528292 | 8529236 | C_unshiu_00154:mRNA_1.1 | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
| Tf0208 | - | - | - | - | - | - | SI181 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
| Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
| Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | Ciclev10027790m | scaffold_8 | 21953129 | 21960709 | C_unshiu_02574:mRNA_1.1 | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
| Bf0142 | O | - | - | - | - | - | Ciclev10024891m | scaffold_7 | 8508837 | 8516759 | C_unshiu_00290:mRNA_16.1 | C_unshiu_00290 | 151884 | 158772 | Class III homeodomain leucine zipper protein | AGI-02 | 5.104 | |||||||||||
| Tf0092 | - | - | - | - | - | - | SI099 | Ciclev10007435m | scaffold_1 | 3285601 | 3291534 | C_unshiu_00006:mRNA_60.1 | C_unshiu_00006 | 496127 | 502071 | Class III HD-Zip family protein | ||||||||||||
| Lp0145 | - | - | - | - | - | - | C_unshiu_01491:mRNA_8.1 | C_unshiu_01491 | 47122 | 50568 | Class I glutamine amidotransferase superfamily protein | KmG-05S | 40.802 | JtR-05 | ||||||||||||||
| Fb1784 | - | - | - | - | - | - | Ciclev10028959m | scaffold_8 | 445469 | 446936 | C_unshiu_02466:mRNA_2.1 | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
| Lp0133 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021187m | scaffold_3 | 39657613 | 39660222 | C_unshiu_00037:mRNA_84.1 | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
| Af1645 | - | - | - | - | - | - | Ciclev10000427m | scaffold_5 | 2472805 | 2477375 | C_unshiu_00127:mRNA_11.1 | C_unshiu_00127 | 52207 | 62775 | Class I (E and Q) tRNA synthetase | AGI-09 | 90.878 | |||||||||||
| Lg2004 | - | - | - | - | - | - | Ciclev10028785m | scaffold_8 | 2599717 | 2602090 | C_unshiu_00152:mRNA_53.1 | C_unshiu_00152 | 347645 | 349890 | Cinnamyl alcohol dehydrogenase | AGI-08 | 76.045 | |||||||||||
| Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | Ciclev10028839m | scaffold_8 | 24721937 | 24724569 | C_unshiu_00984:mRNA_8.1 | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
| Bf0031 | O | - | - | - | - | - | Ciclev10031547m | scaffold_4 | 4077557 | 4083819 | C_unshiu_00306:mRNA_12.1 | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
| Cp1627 | AAvailable marker | - | - | - | - | O | O | Ciclev10022024m | scaffold_3 | 13309398 | 13310636 | C_unshiu_00431:mRNA_6.1 | C_unshiu_00431 | 44507 | 45451 | Chloroplast small heat shock protein | AGI-05 | 41.272 | ||||||||||
| Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | Ciclev10004620m | scaffold_9 | 7579900 | 7583093 | C_unshiu_00063:mRNA_61.1 | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
| Fb0827 | O | - | - | - | - | - | SI215,SI301 | Ciclev10004432m | scaffold_9 | 2353442 | 2357780 | C_unshiu_00394:mRNA_9.1 | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
| Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | Ciclev10016280m | scaffold_2 | 23891814 | 23893095 | C_unshiu_00081:mRNA_50.1 | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
| Fb1227 | - | - | - | - | - | - | Ciclev10004375m | scaffold_9 | 3367718 | 3376062 | C_unshiu_00051:mRNA_60.1 | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
| Lp0232 | O | - | - | - | - | - | Ciclev10030590m | scaffold_4 | 21120135 | 21127140 | C_unshiu_00010:mRNA_105.1 | C_unshiu_00010 | 751317 | 757205 | CHASE-domain containing histidine kinase 1 | RP-07 | 19.079 | |||||||||||
| Af1424 | - | - | - | - | - | - | Ciclev10008953m | scaffold_1 | 18688873 | 18690138 | C_unshiu_00137:mRNA_44.1 | C_unshiu_00137 | 354434 | 355481 | CFE protein | AGI-01 | 43.613 | |||||||||||
| Ov0413 | - | - | - | - | - | - | Ciclev10028322m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
| Al0632 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10028775m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | AGI-08 | 56.724 | JtR-08 | 18.952 | ||||||||
| Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10024860m | scaffold_7 | 8603450 | 8610239 | C_unshiu_00290:mRNA_28.1 | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
| Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | Ciclev10018691m | scaffold_3 | 34696661 | 34702240 | C_unshiu_00669:mRNA_17.2 | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
| Cp1584 | AAvailable marker | - | - | - | - | - | O | Ciclev10031523m | scaffold_4 | 201556 | 204527 | C_unshiu_00168:mRNA_36.1 | C_unshiu_00168 | 285304 | 287905 | Cell division cycle 20.1, cofactor of APC complex | ||||||||||||
| Fb0326 | O | - | - | - | - | - | Ciclev10002506m | scaffold_5 | 43051579 | 43053394 | C_unshiu_00370:mRNA_38.1 | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
| Cp1852 | - | - | - | - | - | - | Ciclev10010530m | scaffold_1 | 22711668 | 22715696 | C_unshiu_00103:mRNA_19.2 | C_unshiu_00103 | 116559 | 121057 | Cell differentiation protein rcd1 | AGI-02 | 9.592 | |||||||||||
| Al0037 | - | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | |||||||||||
| Al0037.2 | Al0037.k | O | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | ||||||||||
| Tf0271 | Bno homozygous cultivar with minor allele | O | O | - | O | - | - | Ciclev10010976m | scaffold_6 | 11707953 | 11715646 | C_unshiu_01619:mRNA_7.1 | C_unshiu_01619 | 42347 | 50640 | CCR4-NOT transcription complex subunit 4 | AGI-08 | 95.613 | ||||||||||
| Cp1216 | AAvailable marker | - | - | - | - | O | O | Ciclev10017113m | scaffold_2 | 12112790 | 12113903 | C_unshiu_00026:mRNA_6.1 | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
| Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | Ciclev10008537m | scaffold_1 | 18068297 | 18070262 | C_unshiu_00187:mRNA_17.1 | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
| Af1379 | - | - | - | - | - | - | Ciclev10026357m | scaffold_7 | 3456105 | 3460607 | C_unshiu_00301:mRNA_21.2 | C_unshiu_00301 | 134429 | 138770 | CBS domain-containing protein CBSX1, chloroplastic | AGI-02 | 68.467 | |||||||||||
| Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | Ciclev10008225m | scaffold_1 | 1070373 | 1072218 | C_unshiu_00005:mRNA_43.1 | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
| Al0223 | - | - | - | - | - | - | Ciclev10011771m | scaffold_6 | 17438270 | 17440122 | C_unshiu_00008:mRNA_127.1 | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
| Al0317 | - | - | - | - | - | - | Ciclev10021392m | scaffold_3 | 3006218 | 3008357 | C_unshiu_00092:mRNA_60.1 | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
| Af1177 | - | - | - | - | - | - | Ciclev10005989m | scaffold_9 | 2168387 | 2170546 | C_unshiu_00085:mRNA_13.1 | C_unshiu_00085 | 78341 | 80308 | CASP-like protein 1E1 | AGI-03 | 18.579 | |||||||||||
| Bf1192 | - | - | - | - | - | - | Ciclev10008160m | scaffold_1 | 10678653 | 10684627 | C_unshiu_00242:mRNA_11.1 | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
| Gn0066.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10011230m | scaffold_6 | 19578179 | 19583475 | C_unshiu_00043:mRNA_12.1 | C_unshiu_00043 | 90212 | 94791 | Carotenoid isomerase | AGI-04 | |||||||||||
| Bf0212 | - | - | - | - | - | - | SI332 | Ciclev10016442m | scaffold_2 | 9206686 | 9211152 | C_unshiu_00004:mRNA_52.2 | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
| Bf0030 | O | - | - | - | - | - | Ciclev10022841m | scaffold_3 | 46452893 | 46453717 | C_unshiu_00627:mRNA_10.1 | C_unshiu_00627 | 45215 | 45931 | Calvin cycle protein CP12 | RP-05 | 58.661 | |||||||||||
| Ov0013 | OOthers | - | - | - | - | - | - | Ciclev10005251m | scaffold_9 | 18058387 | 18060752 | C_unshiu_00556:mRNA_14.1 | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
| Cp0089 | Bno homozygous cultivar with minor allele | O | - | O | - | - | - | Ciclev10032543m | scaffold_4 | 23858830 | 23861090 | C_unshiu_00001:mRNA_128.1 | C_unshiu_00001 | 852968 | 856494 | CAAX amino terminal protease family protein | AGI-07 | 77.194 | ||||||||||
| Lp0004 | OOthers | - | - | - | - | - | - | Ciclev10026144m | scaffold_7 | 15376818 | 15378771 | C_unshiu_00703:mRNA_1.1 | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
| Tf0019 | - | - | - | - | - | - | SI056,SI347 | Ciclev10001255m | scaffold_5 | 41881297 | 41883386 | C_unshiu_00009:mRNA_161.1 | C_unshiu_00009 | 1049324 | 1051358 | C2H2-like zinc finger protein | AGI-09 | 34.799 | ||||||||||
| Tf0335 | - | - | - | - | - | - | SI014,SI168 | Ciclev10033529m | scaffold_4 | 2457798 | 2458868 | C_unshiu_00979:mRNA_19.1 | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
| Tf0021 | AAvailable marker | - | - | - | - | - | O | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | ||||||||||||
| Af1499 | - | - | - | - | - | - | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | AGI-04 | ||||||||||||