Citrus CAPS Marker Database

Locus name: Af1042

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1200
Comment on PCR:
F-primer: CATCCAGTGCCGTGAATG
R-primer: ATATATTTGTCTATGGCGACT

EST info

EST Accession number 1: CB610577
EST Accession number 2:

sequence-tagged site (STS seq)

STS:

TCTTCTTCTTTTTTTTCCTTGTTGATTTTCATCTT

STS source: Clementine haploid
STS Forward / Reverse: Foward read

STS:

AAATCACCACACAAACCACAGTGAACTGCTGAGAAGCTACAACGAAACTGGCAGTTTGCA
AGACAGCTGGTTATGCTTCATAGGCATTGGCTCTCCACCCACATCTCCCCATTAACGTGC
CTCATATTGAACAACTGCAAGAAGAAAAATGCTCATATAAGAACAAATGTTTGATCACTA
AGCAATGCAATGTGACAGGTGAACAGGGAAAAAAATGCAAGACCAGTACCAGTGAAAGAG
GTAATTATTAATAATTGCAGCACAGATTGGCAACATATGAATAAAAAGTATCACAAGTAA
TTAAAGCTTTTCTTTCACCTAAGTGCCAGAAGATTAGATCCAGGCAGAATAATTTGGTTG
TCTAAAGCTGGACTTGCACAACGACTAAGACAAAAGCTTAATTTCATTGTTATTCCAATG
TCTTCAACCAATAATAAAAAGAAGATAGGTGAGAACAAAGCTGATATGATAATGTGAAAT
GCATTTAGGCTATTTGCCATCCATCCTTAAAAGAACATTATTGTGCAAATTGGAGGTATC
ATCAACTATTCCTTAAAGAAGAATCACTAAAGACACGAAACCTAAACTAAATGCCCAATA
TTCACAAGACCGAACAACCTGCCTCTATATAATGTCAAGAACGCGATTTTGCCCTGCGGG
TATGTATTCAATGCATAACAATTACAACGTTAACGAACATCCAATTAATACACTCTTGAA
AGCCCTAATTCACCACATAGCGAACCAACTGCTAGAGAACTGCCGCCACAATGCTGCCGC
A

STS source: Clementine haploid
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:

Compared cultivars (Left, (Middle), Right): Frying dragon/Hyuuganatsu
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Rsetriction enzyme: Hind3
Comment: DNA sample: New CCN
Figure legend:

CV (No.1 Top) 101 Tahiti, 100 Rangpurlime, 102 Limonia, 104 LisbonL, 99 SweetLime, 92 Hirado, 87 MGF, 85 Kinukawa, 84 Hassaku, 83 Yamamikan, 78 Natsudaidai, 58 Rokugatu, Tr Trovita, 50 WNV, 44 Tankan, 42 Iyo,
(No.1 Bottom) 39 HgNt, 36 Ujukitsu, 32 Kawabata, 30 Shunkokan, 70 Yuzu, 54 Henka, 53 Ichang lemon, 37 Kunenbo, Mg Miyagawa, 31 Yatsushiro, 27 Kabuchii, 26 Ponkan, 25 Medet. 22. Dancy, 14 Tachibana, 11 Hirakishu (26' Ohta ponkan)

(No.2 Top) 6 Cleopatra, 4 CQ, 2 Fukuremikan, FD Hiryuu, 124 Largeleaf, 125 Small leaf, 141 CTV-S, 136 Rubidoaux,
(No.2 Bottom) FD, Hassaku, Km, F1, RP94, SA, 02, 04, 05, 06, 07, 08, 09, 10, 11, 13

BDZ BenDi Zao, SO Shuto, BP Banpeiyu

Experiments: Segregation pattern

Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: Hinc2
Comment:
Figure legend:

A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless

Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: Hind3
Comment:
Figure legend:

Target on C. clementina (v1.0)

Transcript ID: Ciclev10017429m
Scaffold: scaffold_2
Start: 28786444
End: 28788097

Target on C. unshiu (v1.0)

Transcript ID: No
Scaffold:
Start:
End:
Gene function:

AGI map info (Shimada et al. 2014)

AGI LG: AGI-06
AGI cM: 55.7

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: