Citrus CAPS Marker Database

National Agriculture and Food Research Organization
Key word search
  
Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Af0005 ------TP Ciclev10005894mscaffold_924528532455181
Af0006 ------TP Ciclev10001011mscaffold_53688310336887975
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Af0010 ------TP Ciclev10004080mscaffold_54029749240299711
Af0011 ------TP Ciclev10025929mscaffold_71135799011362560
Af0012 ------TP Ciclev10006108mscaffold_924587932459573
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
Af0015 ------TP Ciclev10019449mscaffold_34402177944027536J C_unshiu_00217:mRNA_10.1C_unshiu_002178639391294Hypothetical proteinAGI-0554.268
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Af0017 ------TP Ciclev10029358mscaffold_8313112317158
Af0018 ------TP Ciclev10000947mscaffold_54069180140694522
Af1003 O-----TP Ciclev10001093mscaffold_51560585215610028J C_unshiu_00533:mRNA_20.1C_unshiu_00533131430141111Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrialAGI-0222.436
Af1004 ------TP Ciclev10008926mscaffold_12442676024434342
Af1005 ------TP Ciclev10012491mscaffold_62071559020719704
Af1006 ------TP Ciclev10005512mscaffold_92466110924664797
Af1007 ------TP Ciclev10021398mscaffold_31281473112817148
Af1008 ------TP Ciclev10006973mscaffold_924700852471703
Af1009 ------TP Ciclev10015365mscaffold_23581832735822366
Af1010 ------TP Ciclev10014106mscaffold_23165651031666206
Af1011 O-----TP Ciclev10013781mscaffold_62530682925315243J C_unshiu_00009:mRNA_53.1C_unshiu_00009289462299397Hypothetical proteinRP-0460.491
Af1012 ------TP Ciclev10026672mscaffold_71627039416272027
Af1013 ------TP Ciclev10022053mscaffold_34862190948624876
Af1014 ------TP Ciclev10018683mscaffold_34359463843605172
Af1016 ------TP Ciclev10025840mscaffold_723944712397293
Af1017 O-----TP Ciclev10006402mscaffold_92267155422672639NoAGI-0346.274
Af1019 ------TP Ciclev10005635mscaffold_9192512196670
Af1021 ------TP Ciclev10022113mscaffold_34066463540665640
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Af1023 ------TP Ciclev10028042mscaffold_827196542725331
Af1024 ------TP Ciclev10016735mscaffold_23584185935844177
Af1025 ------TP Ciclev10019927mscaffold_34833710548339028
Af1026 O-----TP Ciclev10016450mscaffold_22469026124692734J C_unshiu_00136:mRNA_33.1C_unshiu_00136278221280719Period circadian protein, putative isoform 1RP-06.124.027
Af1027 O-----TP Ciclev10005293mscaffold_929463012950297
Af1028 O-----TP Ciclev10000335mscaffold_54211362142120391
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1030 ------TP Ciclev10026876mscaffold_739307883932748
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
Af1032 O-----TP Ciclev10009868mscaffold_183774898379348
Af1033 O-----TP Ciclev10016063mscaffold_21045689910459385
Af1034 ------TP Ciclev10013228mscaffold_619501211950908
Af1035 O-----TP Ciclev10030982mscaffold_42346918423472872
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Af1038 ------
Af1039 ------TP Ciclev10031458mscaffold_41438114414384897
Af1040 ------TP Ciclev10019364mscaffold_32935185429354190
Af1041 ------TP Ciclev10002311mscaffold_54030030640304768
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Af1043 ------TP Ciclev10026060mscaffold_72004993620052008J C_unshiu_00519:mRNA_19.1C_unshiu_00519110187111261Ribonucleoside-diphosphate reductase subunit M2AGI-0244.231
Af1044 ------TP Ciclev10013662mscaffold_61637885816383103
Af1045 ------TP Ciclev10000659mscaffold_591977749204364
Af1046 ------TP Ciclev10000873mscaffold_53999223439996269
Af1047 ------TP Ciclev10019002mscaffold_31635722716363309J C_unshiu_01252:mRNA_3.1C_unshiu_012526066966705NADH dehydrogenase subunit 11AGI-0541.306
Af1048 ------TP Ciclev10019002mscaffold_31635722716363309
Af1050 ------TP Ciclev10002662mscaffold_54287956342882316
Af1051 O-----TP Ciclev10000105mscaffold_53509313235106001
Af1052 O-----TP Ciclev10004444mscaffold_91280815412820311J C_unshiu_00508:mRNA_9.1C_unshiu_005084038558179Hypothetical proteinAGI-0856.724
Af1053 O-----TP Ciclev10014664mscaffold_22920681829208977
Af1054 ------TP Ciclev10005132mscaffold_920333312036879
Af1055 ------TP Ciclev10001625mscaffold_54229797942300281
Af1056 ------TP Ciclev10015905mscaffold_22659597226598955J C_unshiu_00262:mRNA_14.1C_unshiu_002628457387520Purple acid phosphatase 3AGI-0666.320
Af1057 ------TP Ciclev10000654mscaffold_51267741412680761
Af1058 ------TP Ciclev10018655mscaffold_32300102623009675
Af1059 ------TP Ciclev10011827mscaffold_62306638423072168J C_unshiu_00038:mRNA_98.1C_unshiu_00038554982560549Plastidic glucose transporter 4AGI-0444.840
Af1060 O-----TP Ciclev10000400mscaffold_54291837142923480J C_unshiu_00370:mRNA_16.1C_unshiu_003707528379772Tonoplast monosaccharide transporter 2AGI-0923.647
Af1061 O-----TP Ciclev10024969mscaffold_760804106084393
Af1062 ------TP Ciclev10012766mscaffold_61489293914897320J C_unshiu_00102:mRNA_47.1C_unshiu_00102331172333886PRA1 family protein A1AGI-0893.624
Af1064 ------TP Ciclev10004309mscaffold_93051333330517676
Af1065 ------TP Ciclev10009538mscaffold_11100875911012720
Af1066 ------TP Ciclev10024951mscaffold_738870103890047
Af1067 O-----
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Af1069 ------TP Ciclev10005528mscaffold_917871211788837
Af1070 O-----TP Ciclev10008140mscaffold_11730856617311235
Af1071 ------TP Ciclev10008192mscaffold_12860732528610917
Af1072 ------TP Ciclev10005792mscaffold_91354513713548134
Af1073 O-----TP Ciclev10021041mscaffold_3632882635612
Af1074 ------TP Ciclev10015644mscaffold_21230876112314225
Af1077 ------TP Ciclev10019936mscaffold_34787644847878633
Af1078 ------TP Ciclev10007573mscaffold_194288419434694
Af1079 ------TP Ciclev10009570mscaffold_132551403258139
Af1080 ------TP Ciclev10001557mscaffold_53831498938317341
Af1081 ------TP Ciclev10010514mscaffold_156502175655629
Af1082 ------TP Ciclev10021811mscaffold_34386958343874373
Af1083 ------TP Ciclev10025156mscaffold_71550555615510930
Af1084 ------TP Ciclev10008467mscaffold_12571686225720071J C_unshiu_00066:mRNA_57.1C_unshiu_00066369928382143Hypothetical proteinAGI-0124.643
Af1085 ------TP Ciclev10001010mscaffold_54069180140694522
Af1086 ------TP Ciclev10031563mscaffold_41051001810517939J C_unshiu_00028:mRNA_1.2C_unshiu_00028411512036AP-2 complex subunit muAGI-0541.306
Af1087 O-----TP Ciclev10019689mscaffold_32479635124800588J C_unshiu_00286:mRNA_17.1C_unshiu_00286132648135466Glycine hydroxymethyltransferaseAGI-0541.306
Af1088 O-----TP Ciclev10031611mscaffold_41717111417174966
Af1089 ------TP Ciclev10028589mscaffold_860689446075685
Af1090 ------TP Ciclev10019200mscaffold_3951691958430
Af1091 O-----TP Ciclev10021043mscaffold_34331604643317909J C_unshiu_00411:mRNA_2.1C_unshiu_004111151013352Arabinose 5-phosphate isomeraseAGI-0552.655
Af1092 O-----TP Ciclev10019279mscaffold_35086809650873164
Af1093 ------TP Ciclev10011263mscaffold_61905551819058726
Af1094 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinAGI-0130.175
Af1095 ------TP Ciclev10014502mscaffold_21069542410700095
Af1096 ------TP Ciclev10020597mscaffold_34206148842063267J C_unshiu_00778:mRNA_10.1C_unshiu_007788974191509Cytochrome P450 82A4AGI-0551.052
Af1097 ------TP Ciclev10014845mscaffold_22382986223832918
Af1098 ------TP Ciclev10028668mscaffold_8356241360220
Af1099 ------TP Ciclev10019462mscaffold_360724606076187
Af1100 ------TP Ciclev10026703mscaffold_71085348710855215J C_unshiu_00451:mRNA_17.1C_unshiu_00451120744122474Ran BP2/NZF zinc finger-like superfamily protein isoform 1AGI-0213.326
Af1101 ------TP Ciclev10022644mscaffold_388436448845811
Af1102 ------TP Ciclev10020214mscaffold_34162795241634431
Af1103 ------TP Ciclev10018380mscaffold_21139330311394035
Af1104 ------TP Ciclev10015941mscaffold_23215529832158290
Af1105 ------TP Ciclev10002128mscaffold_54117787441181556
Af1106 ------TP Ciclev10031741mscaffold_42213114222133007
Af1107 ------TP Ciclev10009146mscaffold_146069124610637
Af1108 ------TP Ciclev10009222mscaffold_180461818049306
Af1109 ------J C_unshiu_00194:mRNA_16.1C_unshiu_001949641598120Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1AGI-0548.590
Af1110 ------TP Ciclev10028599mscaffold_896568659660001J C_unshiu_01425:mRNA_1.1C_unshiu_014253335522N-carbamoylputrescine amidaseAGI-0856.690
Af1111 ------TP Ciclev10015086mscaffold_22302119323023457J C_unshiu_00172:mRNA_31.1C_unshiu_00172270783273047Glucan endo-1,3-beta-glucosidase 13AGI-0683.445
Af1112 ------TP Ciclev10001559mscaffold_54149679241499173
Af1113 ------TP Ciclev10028842mscaffold_813761231378446
Af1114 ------TP Ciclev10022658mscaffold_3602713605468
Af1115 ------TP Ciclev10020832mscaffold_32057778620583404
Af1116 ------TP Ciclev10001154mscaffold_567490246753178J C_unshiu_00100:mRNA_44.1C_unshiu_00100361556365479Magnesium transporter MRS2-like proteinAGI-0985.810
Af1117 ------TP Ciclev10028909mscaffold_81256310212564623
Af1118 ------TP Ciclev10029373mscaffold_851594285162015
Af1119 ------TP Ciclev10012975mscaffold_61872314718725557
Af1120 ------TP Ciclev10008829mscaffold_11123248211237918
Af1121 ------TP Ciclev10025591mscaffold_761274646131417
Af1122 ------TP Ciclev10033093mscaffold_42387159323873478
Af1123 ------TP Ciclev10009597mscaffold_116878941690412
Af1124 ------
Af1126 ------TP Ciclev10026538mscaffold_72065609920658251
Af1127 ------TP Ciclev10016337mscaffold_23299856033003916
Af1128 ------TP Ciclev10022649mscaffold_34950828849511063
Af1129 ------TP Ciclev10014531mscaffold_287273468730038
Af1130 ------TP Ciclev10012011mscaffold_62242509422426402
Af1131 ------TP Ciclev10006197mscaffold_923628292365557
Af1132 ------TP Ciclev10005061mscaffold_918362501840208
Af1133 ------TP Ciclev10001729mscaffold_54297875242983516
Af1134 ------TP Ciclev10032388mscaffold_42144380321447097
Af1135 ------TP Ciclev10002795mscaffold_53325635433257201
Af1136 ------TP Ciclev10002356mscaffold_52135405421361949
Af1137 ------TP Ciclev10009474mscaffold_120386812041094
Af1138 ------TP Ciclev10002375mscaffold_54056010940563236
Af1139 ------TP Ciclev10000272mscaffold_54265399442661287
Af1140 ------TP Ciclev10029224mscaffold_813369071339200
Af1141 ------
Af1142 ------TP Ciclev10008681mscaffold_1487184489198
Af1143 ------TP Ciclev10012182mscaffold_62112798421132025
Af1145 ------TP Ciclev10018013mscaffold_22456585724567752
Af1146 ------TP Ciclev10008189mscaffold_12259367122599178
Af1147 ------TP Ciclev10012837mscaffold_62236543322367412
Af1148 ------TP Ciclev10025238mscaffold_779048657908319
Af1149 ------TP Ciclev10025360mscaffold_71298595412989228J C_unshiu_02261:mRNA_2.1C_unshiu_022611915621966Glycerol kinaseAGI-0521.630
Af1150 ------TP Ciclev10031943mscaffold_42540903525412164
Af1151 ------TP Ciclev10022903mscaffold_33660819736611090
Af1153 ------TP Ciclev10015940mscaffold_22012417020127095
Af1154 ------TP Ciclev10029070mscaffold_82414398824146294
Af1155 ------TP Ciclev10016372mscaffold_23583683035839763
Af1156 ------TP Ciclev10028887mscaffold_869016306904625
Af1157 ------TP Ciclev10009325mscaffold_112345551235706
Af1158 ------TP Ciclev10020023mscaffold_332418623247042
Af1159 ------TP Ciclev10022925mscaffold_327744652775592
Af1160 ------TP Ciclev10022213mscaffold_374253537428313
Af1161 ------TP Ciclev10017060mscaffold_244955964498439
Af1162 ------TP Ciclev10020996mscaffold_34954671249548191
Af1163 ------TP Ciclev10031039mscaffold_42550644625511133
Af1164 ------TP Ciclev10019787mscaffold_359810665985524
Af1165 ------TP Ciclev10021620mscaffold_33933173139333098
Af1166 ------TP Ciclev10021716mscaffold_34157681341581730
Af1168 ------TP Ciclev10022842mscaffold_32838962528390574
Af1169 ------TP Ciclev10006148mscaffold_918444201846037
Af1169b ------TP Ciclev10029381mscaffold_82237515322376849
Af1171 ------TP Ciclev10008298mscaffold_1275263280936
Af1172 ------TP Ciclev10001677mscaffold_53597495435979998
Af1173 ------TP Ciclev10009205mscaffold_12459159824593689
Af1174 ------TP Ciclev10014963mscaffold_22931417629319032
Af1175 ------TP Ciclev10009729mscaffold_136475393651252
Af1176 ------TP Ciclev10017100mscaffold_23598034135983262
Af1177 ------TP Ciclev10005989mscaffold_921683872170546J C_unshiu_00085:mRNA_13.1C_unshiu_000857834180308CASP-like protein 1E1AGI-0318.579
Af1178 ------
Af1179 ------TP Ciclev10006271mscaffold_92913606729137517
Af1180 ------TP Ciclev10003612mscaffold_52719235027195683
Af1181 ------TP Ciclev10009123mscaffold_180635308066056
Af1182 ------TP Ciclev10020464mscaffold_34287481442879300
Af1183 ------TP Ciclev10005344mscaffold_9280915283060
Af1184 ------TP Ciclev10019895mscaffold_33210577432108155
Af1185 ------TP Ciclev10012743mscaffold_61223103712235473
Af1186 ------
Af1187 ------TP Ciclev10031748mscaffold_42499601725000652J C_unshiu_00001:mRNA_314.1C_unshiu_0000119916931996431Tocopherol O-methyltransferaseAGI-0785.027
Af1188 ------TP Ciclev10021960mscaffold_356066015609366
Af1189 ------TP Ciclev10005793mscaffold_91483707414840606
Af1190 ------TP Ciclev10023762mscaffold_34651003946512543
Af1191 ------TP Ciclev10028098mscaffold_8180851185769
Af1192 ------TP Ciclev10022723mscaffold_33709478537098257
Af1193 ------TP Ciclev10028241mscaffold_82345663023459052
Af1194 ------TP Ciclev10026223mscaffold_782550468256442
Af1195 ------TP Ciclev10021820mscaffold_34203425542039591
Af1196 ------TP Ciclev10032970mscaffold_42109040821092841
Af1197 ------TP Ciclev10009151mscaffold_11646794216471056
Af1198 ------TP Ciclev10021819mscaffold_323196752322962
Af1199 ------TP Ciclev10019763mscaffold_34955405049560198
Af1200 ------TP Ciclev10029354mscaffold_81806476118071003
Af1201 ------TP Ciclev10012248mscaffold_61663752016640347
Af1202 ------TP Ciclev10033216mscaffold_41592757615929918
Af1203 ------TP Ciclev10021949mscaffold_34021931540224503
Af1204 ------TP Ciclev10029631mscaffold_82409720624099101
Af1205 ------TP Ciclev10002396mscaffold_53416172134162652J C_unshiu_00196:mRNA_4.1C_unshiu_001961521916117Basic helix-loop-helix DNA-binding superfamily protein, putativeAGI-0964.754
Af1206 ------TP Ciclev10002697mscaffold_54210931642112542
Af1207 ------TP Ciclev10025335mscaffold_71560506515607345J C_unshiu_00628:mRNA_20.1C_unshiu_00628144683146646Flavonoid 3'-monooxygenaseAGI-0221.344
Af1208 ------TP Ciclev10029134mscaffold_82303629123037524J C_unshiu_02220:mRNA_1.1C_unshiu_022201198213216Tonoplast intrinsic proteinAGI-0817.057
Af1209 ------TP Ciclev10022439mscaffold_312811191281817
Af1210 ------TP Ciclev10026807mscaffold_72005647520058190
Af1211 ------TP Ciclev10007095mscaffold_962267316229337
Af1212 ------TP Ciclev10032370mscaffold_41711891617121135
Af1213 ------TP Ciclev10010027mscaffold_128219222823925
Af1214 ------TP Ciclev10005447mscaffold_91283934512844087
Af1218 ------TP Ciclev10009894mscaffold_12623740526239791
Af1219 ------TP Ciclev10022271mscaffold_34220029942203934
Af1220 ------TP Ciclev10013088mscaffold_62272468222726973
Af1221 ------TP Ciclev10022216mscaffold_363291336332201
Af1222 ------TP Ciclev10018015mscaffold_23593458935935920
Af1223 ------TP Ciclev10009839mscaffold_12711141227114276J C_unshiu_00347:mRNA_8.1C_unshiu_003476655579401Flavin-binding kelch domain F box proteinAGI-0997.668
Af1224 ------TP Ciclev10002263mscaffold_599795159982669
Af1225 ------TP Ciclev10027859mscaffold_810943661097096
Af1226 ------
Af1227 ------TP Ciclev10022750mscaffold_34267204342673648
Af1228 ------TP Ciclev10026542mscaffold_783179788319191
Af1229 ------TP Ciclev10016825mscaffold_21344181313443080
Af1230 ------TP Ciclev10026057mscaffold_7370952372493
Af1231 ------TP Ciclev10002376mscaffold_51218328112186007
Af1232 ------TP Ciclev10011608mscaffold_62054109620546049
Af1233 ------TP Ciclev10025897mscaffold_72084194220846077
Af1234 ------TP Ciclev10007572mscaffold_11997533219979144
Af1235 ------TP Ciclev10026233mscaffold_71721289517215557
Af1236 ------TP Ciclev10015450mscaffold_22685238126857537
Af1237 ------TP Ciclev10021146mscaffold_310580121060668
Af1238 ------TP Ciclev10031252mscaffold_41662633816629094
Af1239 ------
Af1240 ------TP Ciclev10011152mscaffold_62374884723753978
Af1241 ------TP Ciclev10008227mscaffold_114018421406346
Af1242 ------TP Ciclev10019465mscaffold_35041789050421625
Af1244 ------TP Ciclev10006361mscaffold_944481674450777
Af1244b ------TP Ciclev10016184mscaffold_22777924727785501
Af1245 ------TP Ciclev10019739mscaffold_34812912348133714
Af1246 ------TP Ciclev10002048mscaffold_52879713528801282
Af1247 ------TP Ciclev10011980mscaffold_62063804920641557
Af1248 ------TP Ciclev10007063mscaffold_916387701641073
Af1249 ------TP Ciclev10017171mscaffold_23366001133663665
Af1251 ------TP Ciclev10002135mscaffold_52970668829710388
Af1252 ------TP Ciclev10027813mscaffold_82420238424209439
Af1253 ------TP Ciclev10020405mscaffold_332012063204377J C_unshiu_00163:mRNA_29.1C_unshiu_00163211551214568Phosphate/phosphoenolpyruvate translocatorAGI-0524.709
Af1254 ------TP Ciclev10003301mscaffold_53675145336759896
Af1255 ------TP Ciclev10006003mscaffold_92806122128063450
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Af1260 ------TP Ciclev10001188mscaffold_53886966638875561
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Af1263 ------TP Ciclev10005448mscaffold_92849434828496251
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Af1265 ------TP Ciclev10031646mscaffold_42278910422792252
Af1266 ------TP Ciclev10032367mscaffold_484003788404853
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Af1268 ------TP Ciclev10011546mscaffold_62252321322529556
Af1269 ------TP Ciclev10009375mscaffold_12704312427045483
Af1270 ------TP Ciclev10011405mscaffold_61758989517593051
Af1271 ------TP Ciclev10025653mscaffold_71332358313328683
Af1272 ------TP Ciclev10019689mscaffold_32479635124800588
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Af1274 ------TP Ciclev10009370mscaffold_131525483153983
Af1275 ------TP Ciclev10028274mscaffold_81303517413037307
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Af1277 ------TP Ciclev10030804mscaffold_42381151123814763
Af1278 ------TP Ciclev10009508mscaffold_169038046908960
Af1279 ------TP Ciclev10031302mscaffold_41451078714516311
Af1281 ------TP Ciclev10029683mscaffold_82036663720367616
Af1282 ------
Af1283 ------TP Ciclev10016366mscaffold_22975772329762309
Af1285 ------TP Ciclev10010796mscaffold_11280759712808725
Af1286 ------
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Af1288 ------TP Ciclev10016357mscaffold_23580351235805985
Af1289 ------TP Ciclev10001940mscaffold_542898764293681
Af1290 ------TP Ciclev10029472mscaffold_82441315724415621
Af1291 ------TP Ciclev10026757mscaffold_747794004780310
Af1292 ------TP Ciclev10026736mscaffold_766773146680214
Af1293 ------TP Ciclev10014998mscaffold_21659779616602257
Af1294 ------TP Ciclev10018252mscaffold_22777486327778271
Af1295 ------TP Ciclev10030829mscaffold_434680833477274
Af1296 ------TP Ciclev10031556mscaffold_41913359219137895
Af1297 ------TP Ciclev10013207mscaffold_62331186723313814
Af1298 ------TP Ciclev10005845mscaffold_920372732040825
Af1299 ------TP Ciclev10017055mscaffold_22763816327639131
Af1300 ------TP Ciclev10008203mscaffold_185396478542949
Af1301 ------TP Ciclev10025759mscaffold_7866845870030
Af1302 ------TP Ciclev10031454mscaffold_41445776614462726
Af1303 ------TP Ciclev10009361mscaffold_12281092922812161
Af1304 ------TP Ciclev10019494mscaffold_322104852215202
Af1305 ------TP Ciclev10029439mscaffold_81976007719761961
Af1306 ------TP Ciclev10014843mscaffold_22896866828973736
Af1307 ------TP Ciclev10005707mscaffold_953105135314498
Af1308 ------TP Ciclev10025747mscaffold_71362550413630800
Af1309 ------TP Ciclev10021713mscaffold_35064775350652010
Af1310 ------TP Ciclev10016380mscaffold_21448140214484929
Af1311 ------TP Ciclev10009720mscaffold_120256982028188
Af1312 ------TP Ciclev10014367mscaffold_22902243329030537J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1AGI-0637.883
Af1313 ------TP Ciclev10014748mscaffold_23122229931225439
Af1314 ------TP Ciclev10001751mscaffold_53828341938284959
Af1315 ------TP Ciclev10025598mscaffold_7203839207450
Af1316 ------TP Ciclev10006289mscaffold_9685220687072
Af1317 ------TP Ciclev10022803mscaffold_33593219835935023
Af1318 ------TP Ciclev10016868mscaffold_21254954312550712
Af1320 ------TP Ciclev10018023mscaffold_23460247934604518
Af1321 ------TP Ciclev10009751mscaffold_11637116816375666J C_unshiu_00108:mRNA_25.1C_unshiu_00108320409344557Hypothetical proteinAGI-0634.500
Af1322 ------TP Ciclev10003088mscaffold_54171556241717774
Af1324 ------TP Ciclev10002404mscaffold_53818966938190638
Af1325 ------TP Ciclev10026096mscaffold_762874606289468
Af1326 ------TP Ciclev10021439mscaffold_34325833943260615
Af1327 ------TP Ciclev10006293mscaffold_92949859529499368
Af1328 ------TP Ciclev10022653mscaffold_33983468039837971
Af1329 ------
Af1330 ------TP Ciclev10032948mscaffold_41992708419929921
Af1331 ------TP Ciclev10002737mscaffold_54138640941389807
Af1332 ------TP Ciclev10013051mscaffold_62083442720836151J C_unshiu_00052:mRNA_57.1C_unshiu_0005245595945768460S acidic ribosomal proteinAGI-04
Af1333 ------TP Ciclev10012166mscaffold_61428119714286862
Af1335 ------TP Ciclev10016822mscaffold_22754966027551146
Af1336 ------TP Ciclev10012322mscaffold_686214398630049
Af1337 ------TP Ciclev10024178mscaffold_32341957423420180
Af1338 ------TP Ciclev10004154mscaffold_92466609224671850
Af1340 ------TP Ciclev10015433mscaffold_23547007835472862
Af1341 ------TP Ciclev10002526mscaffold_54318661843188986
Af1342 ------TP Ciclev10020692mscaffold_32929211129295993
Af1343 ------TP Ciclev10006560mscaffold_92803535528036664
Af1344 ------TP Ciclev10006134mscaffold_92940819429411173
Af1345 ------TP Ciclev10013023mscaffold_61308231313084012J C_unshiu_01022:mRNA_2.1C_unshiu_01022856610161Histone H2AAGI-0893.624
Af1346 ------TP Ciclev10013045mscaffold_61354752913550344
Af1347 ------TP Ciclev10011781mscaffold_62443077924434240
Af1348 ------TP Ciclev10005778mscaffold_92121674821221111
Af1349 ------TP Ciclev10032073mscaffold_432902733293928
Af1350 ------TP Ciclev10008817mscaffold_12501774825021583
Af1351 ------TP Ciclev10016286mscaffold_23491821734919258
Af1352 ------TP Ciclev10029282mscaffold_81111325911117344
Af1353 ------TP Ciclev10009740mscaffold_11402655714027565
Af1354 ------TP Ciclev10029831mscaffold_82134894721352692
Af1355 ------
Af1356 ------TP Ciclev10009976mscaffold_12283750022839817
Af1357 ------TP Ciclev10019924mscaffold_336502943652372
Af1358 ------TP Ciclev10004514mscaffold_9566506571956
Af1359 ------TP Ciclev10007524mscaffold_12598780325992258
Af1360 ------TP Ciclev10008482mscaffold_130615493065503
Af1361 ------TP Ciclev10005795mscaffold_92890361628907377
Af1362 ------TP Ciclev10027931mscaffold_828889922895645J C_unshiu_00152:mRNA_9.1C_unshiu_001527256486513Hypothetical proteinAGI-0880.366
Af1363 ------TP Ciclev10015634mscaffold_21093151510935724
Af1364 ------TP Ciclev10007962mscaffold_12602627826032641
Af1366 ------TP Ciclev10022785mscaffold_34245629942460637
Af1367 ------TP Ciclev10022240mscaffold_336434423647377
Af1369 ------TP Ciclev10008015mscaffold_125519202555129
Af1370 ------TP Ciclev10009015mscaffold_188228348826308J C_unshiu_00579:mRNA_6.1C_unshiu_005794650750108Plasma membraneAGI-0156.590
Af1371 ------TP Ciclev10005481mscaffold_92948865829491181
Af1372 ------TP Ciclev10009165mscaffold_12825430728257305
Af1373 ------TP Ciclev10028814mscaffold_814007551404988
Af1374 ------TP Ciclev10022450mscaffold_33909228539094629
Af1375 ------TP Ciclev10002846mscaffold_53698611336987382
Af1376 ------TP Ciclev10032383mscaffold_4428646432345
Af1377 ------TP Ciclev10001143mscaffold_53278033932783349J C_unshiu_00224:mRNA_50.1C_unshiu_00224297837300694Seryl-tRNA synthetase (Serin-tRNA ligase)AGI-0970.624
Af1378 ------TP Ciclev10016040mscaffold_23527368835277907
Af1379 ------TP Ciclev10026357mscaffold_734561053460607J C_unshiu_00301:mRNA_21.2C_unshiu_00301134429138770CBS domain-containing protein CBSX1, chloroplasticAGI-0268.467
Af1380 ------TP Ciclev10017148mscaffold_23476429434766390
Af1381 ------TP Ciclev10032242mscaffold_42461246324616531
Af1382 ------TP Ciclev10012786mscaffold_62426417724265636
Af1383 ------TP Ciclev10006002mscaffold_945244014525971
Af1384 ------
Af1385 ------TP Ciclev10002573mscaffold_53610605036109239
Af1386 ------TP Ciclev10028011mscaffold_831173373120914
Af1387 ------TP Ciclev10032517mscaffold_42267600822680724
Af1388 ------TP Ciclev10000833mscaffold_553098955315706
Af1389 ------TP Ciclev10020449mscaffold_34456576244567996
Af1390 ------TP Ciclev10021895mscaffold_31225417712259003
Af1391 ------
Af1392 ------TP Ciclev10008930mscaffold_110511551052947
Af1395 ------TP Ciclev10016067mscaffold_23565684535659383
Af1396 ------TP Ciclev10022545mscaffold_349206624923421J C_unshiu_00520:mRNA_16.2C_unshiu_00520166824167867Ribosomal protein L19 family proteinAGI-0528.041
Af1398 ------TP Ciclev10030393mscaffold_878993767902959J C_unshiu_00887:mRNA_6.1C_unshiu_008874912057547Hypothetical proteinAGI-0857.551
Af1399 ------TP Ciclev10030527mscaffold_41993195819937465
Af1400 ------TP Ciclev10024198mscaffold_33004214030047495
Af1401 ------TP Ciclev10022652mscaffold_34375376343756161
Af1402 ------TP Ciclev10029042mscaffold_878919257895996
Af1402b ------TP Ciclev10007310mscaffold_139410933948163
Af1403 ------TP Ciclev10002378mscaffold_52081848620821238
Af1404 ------TP Ciclev10014471mscaffold_21141833111422116
Af1405 ------TP Ciclev10032481mscaffold_42450383824505365J C_unshiu_00001:mRNA_238.1C_unshiu_0000115138111515209FH interacting protein 1AGI-0783.026
Af1406 ------TP Ciclev10009324mscaffold_1329071331103
Af1407 ------TP Ciclev10008782mscaffold_12822063728224080
Af1408 ------TP Ciclev10001178mscaffold_54144366741446709
Af1409 ------TP Ciclev10028349mscaffold_818789861885505
Af1410 ------TP Ciclev10012700mscaffold_62513125625133522
Af1411 ------TP Ciclev10016646mscaffold_22307319123078049
Af1412 ------TP Ciclev10012145mscaffold_62103591021038368
Af1413 ------TP Ciclev10009114mscaffold_145220224524821
Af1414 ------TP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorAGI-0350.895
Af1415 ------TP Ciclev10005717mscaffold_926031342605405J C_unshiu_00366:mRNA_20.1C_unshiu_00366130993132913Transmembrane BAX inhibitor motif-containing protein 4AGI-0316.667
Af1416 ------TP Ciclev10029140mscaffold_837386073741747J C_unshiu_00589:mRNA_10.1C_unshiu_00589131180134227Embryo defective 1273, putative isoform 1AGI-0868.834
Af1417 ------
Af1418 ------TP Ciclev10017186mscaffold_280608508062464
Af1419 ------TP Ciclev10000949mscaffold_53752910837534944
Af1420 ------TP Ciclev10032187mscaffold_41976228219765759
Af1421 ------TP Ciclev10005570mscaffold_92604750926048622
Af1422 ------TP Ciclev10002032mscaffold_54160958441613450
Af1423 ------TP Ciclev10028376mscaffold_82483265324835113
Af1424 ------TP Ciclev10008953mscaffold_11868887318690138J C_unshiu_00137:mRNA_44.1C_unshiu_00137354434355481CFE proteinAGI-0143.613
Af1425 ------TP Ciclev10028562mscaffold_8994687998018
Af1426 ------TP Ciclev10013333mscaffold_62049728920501732
Af1427 ------TP Ciclev10021942mscaffold_33696302636965935
Af1428 ------TP Ciclev10012183mscaffold_62224492422252231
Af1429 ------TP Ciclev10016644mscaffold_2390474395075
Af1430 ------TP Ciclev10000887mscaffold_53805902138064414
Af1431 ------TP Ciclev10019463mscaffold_31314518813150117
Af1432 ------TP Ciclev10032069mscaffold_42366678423669594J C_unshiu_00001:mRNA_103.1C_unshiu_00001659252662036UDP-galactose/UDP-glucose transporter 5BAGI-0772.828
Af1433 ------TP Ciclev10001084mscaffold_53948064739484776
Af1434 ------TP Ciclev10002119mscaffold_54234809342350470
Af1435 ------TP Ciclev10026292mscaffold_757476045748976
Af1436 ------TP Ciclev10014858mscaffold_259753675977280
Af1437 ------TP Ciclev10002114mscaffold_514743961479079J C_unshiu_00060:mRNA_37.1C_unshiu_00060309328313345Short-chain alcohol dehydrogenaseAGI-0992.804
Af1438 ------TP Ciclev10031620mscaffold_4642157644823
Af1439 ------TP Ciclev10003449mscaffold_51488827814889824
Af1440 ------TP Ciclev10014238mscaffold_23481707534823291
Af1441 ------TP Ciclev10015354mscaffold_22643554026438838
Af1442 ------TP Ciclev10032384mscaffold_42461035224612338
Af1443 ------TP Ciclev10011413mscaffold_62504839825053494J C_unshiu_00009:mRNA_3.1C_unshiu_000091576528846Pentatricopeptide repeat-containing family proteinAGI-0433.808
Af1444 ------TP Ciclev10009174mscaffold_136651413672863
Af1445 ------TP Ciclev10016776mscaffold_23288045632882923
Af1446 ------TP Ciclev10016974mscaffold_23043579030437278
Af1447 ------TP Ciclev10031155mscaffold_42280299522807340J C_unshiu_00004:mRNA_35.1C_unshiu_00004275820279748Aldehyde dehydrogenaseAGI-0770.744
Af1449 ------TP Ciclev10006216mscaffold_966975726699157
Af1450 ------TP Ciclev10014769mscaffold_268407436844063
Af1451 ------TP Ciclev10005663mscaffold_939617233964463
Af1452 ------TP Ciclev10018443mscaffold_355184575529974J C_unshiu_00900:mRNA_3.1C_unshiu_009002018630140Pheromone-processing carboxypeptidase kex1AGI-0529.863
Af1453 ------TP Ciclev10023068mscaffold_346632114664667J C_unshiu_01589:mRNA_7.1C_unshiu_015892906337936Hypothetical proteinAGI-0527.956
Af1454 ------TP Ciclev10029330mscaffold_81881310618814838
Af1455 ------TP Ciclev10012934mscaffold_61692788816930377
Af1456 ------TP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28AGI-0346.298
Af1457 ------TP Ciclev10011230mscaffold_61957817919583475
Af1458 ------
Af1459 ------TP Ciclev10009503mscaffold_11297260512977393
Af1460 ------TP Ciclev10025995mscaffold_787122538715371
Af1461 ------TP Ciclev10007728mscaffold_128515212854493
Af1462 ------TP Ciclev10012884mscaffold_62427403124276658J C_unshiu_00133:mRNA_50.1C_unshiu_00133274230284897Hypothetical proteinAGI-0437.527
Af1463 ------TP Ciclev10025935mscaffold_723900102391658
Af1464 ------TP Ciclev10031253mscaffold_432268683232418
Af1465 ------TP Ciclev10026722mscaffold_788986268899984
Af1466 ------TP Ciclev10022406mscaffold_328037852805325
Af1467 ------TP Ciclev10008651mscaffold_12417163224175378J C_unshiu_00047:mRNA_19.1C_unshiu_00047116658120038Putative amino acid permease 7AGI-0129.784
Af1468 ------TP Ciclev10028417mscaffold_82325704323262019
Af1469 ------TP Ciclev10028130mscaffold_82077906920782853
Af1470 ------TP Ciclev10023233mscaffold_34638026446381057NoAGI-0562.767
Af1471 ------TP Ciclev10022208mscaffold_397477759750640
Af1472 ------TP Ciclev10026852mscaffold_71742086117422787
Af1474 ------TP Ciclev10031886mscaffold_42124308521244983
Af1475 ------TP Ciclev10012178mscaffold_61486882114872700
Af1476 ------TP Ciclev10009256mscaffold_138629133866838
Af1477 ------TP Ciclev10016057mscaffold_23356148733563802
Af1478 ------TP Ciclev10009725mscaffold_145341614535260
Af1479 ------TP Ciclev10002189mscaffold_53269961032702689
Af1480 ------TP Ciclev10026531mscaffold_7782313784526
Af1481 ------TP Ciclev10009202mscaffold_117970601800274
Af1482 ------TP Ciclev10001945mscaffold_53655050736552800J C_unshiu_00657:mRNA_2.2C_unshiu_006572854130831DRE binding transcription factorAGI-0949.255
Af1483 ------TP Ciclev10026740mscaffold_755230755524475
Af1484 ------TP Ciclev10023136mscaffold_34288290942885640
Af1485a ------TP Ciclev10026552mscaffold_713817611382875
Af1485b ------TP Ciclev10012181mscaffold_689367058942681
Af1486 ------TP Ciclev10029576mscaffold_81751092617513265J C_unshiu_00962:mRNA_1.1C_unshiu_009624342684Prefoldin subunit 4AGI-0859.562
Af1487 ------TP Ciclev10028531mscaffold_81815548118157658J C_unshiu_00251:mRNA_22.1C_unshiu_00251205180207288DnaJAGI-0847.330
Af1488 ------TP Ciclev10020747mscaffold_349598264964659
Af1489 ------TP Ciclev10016302mscaffold_23607850136081245
Af1490 ------TP Ciclev10005113mscaffold_947427094745030
Af1491a ------TP Ciclev10017207mscaffold_22925805229260162
Af1491b ------TP Ciclev10029091mscaffold_82177798121780912
Af1492 ------TP Ciclev10031173mscaffold_42336541823370600
Af1493 ------
Af1494 ------TP Ciclev10017510mscaffold_22964450729646280
Af1495 ------TP Ciclev10032113mscaffold_42252309222528307J C_unshiu_00004:mRNA_77.1C_unshiu_00004548746553542UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3AGI-0769.544
Af1496 ------TP Ciclev10022757mscaffold_33290402332906262
Af1497 ------TP Ciclev10018482mscaffold_34570436145713084
Af1498 ------TP Ciclev10006723mscaffold_967663496768025J C_unshiu_00307:mRNA_26.2C_unshiu_00307212314218407Heterogeneous nuclear ribonucleoprotein 1AGI-0346.274
Af1499 ------TP Ciclev10011169mscaffold_62190555721908832J C_unshiu_00079:mRNA_39.1C_unshiu_00079273228275864BZIP transcription factor family proteinAGI-04
Af1500 ------TP Ciclev10022594mscaffold_31695742716959735
Af1501 ------TP Ciclev10028637mscaffold_81953813819541255
Af1502 ------TP Ciclev10015770mscaffold_22324392623246266
Af1503 ------TP Ciclev10009155mscaffold_12794366327947071
Af1504 ------TP Ciclev10002895mscaffold_524614062462911
Af1505 ------TP Ciclev10031326mscaffold_415312621535758J C_unshiu_00012:mRNA_96.1C_unshiu_00012704342708725Multiple inositol polyphosphate phosphatase 1AGI-0712.283
Af1506 ------TP Ciclev10019034mscaffold_389147448921411
Af1507a ------TP Ciclev10017265mscaffold_294545179456360
Af1507b ------TP Ciclev10025301mscaffold_72109823021102921
Af1508 ------TP Ciclev10011580mscaffold_62198304421991500J C_unshiu_00079:mRNA_48.1C_unshiu_00079328854336213Stomatal closure-related actin-binding protein 3AGI-041.342
Af1509 ------TP Ciclev10032314mscaffold_42356425123568956J C_unshiu_00001:mRNA_83.3C_unshiu_00001555659560336Hypersensitive-induced response protein 1AGI-0773.796
Af1510 ------TP Ciclev10010950mscaffold_61687127416876833
Af1511 ------TP Ciclev10001383mscaffold_53275955332763763
Af1512 ------TP Ciclev10008994mscaffold_193007829304559
Af1513 ------TP Ciclev10006024mscaffold_92952378629526379J C_unshiu_00056:mRNA_24.1C_unshiu_0005618128218315140S ribosomal protein S10AGI-0363.545
Af1514 ------TP Ciclev10026347mscaffold_71120396711205525
Af1515 ------TP Ciclev10027760mscaffold_82083805320844872J C_unshiu_00883:mRNA_4.1C_unshiu_0088360978104832Argonaute 1AGI-0840.438
Af1516 ------TP Ciclev10025736mscaffold_71587223615875783
Af1517 ------TP Ciclev10002357mscaffold_53109178231094489
Af1518 ------TP Ciclev10029379mscaffold_82191921521923184
Af1519 ------TP Ciclev10012646mscaffold_62341640423418629
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Af1521 ------TP Ciclev10004680mscaffold_997997469804461
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Af1526 ------TP Ciclev10001454mscaffold_53885254738855263
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Af1529 ------TP Ciclev10005711mscaffold_92122879121231253
Af1530 ------TP Ciclev10013041mscaffold_62009203320095946
Af1531 ------TP Ciclev10008796mscaffold_149843404987674
Af1532 ------TP Ciclev10026374mscaffold_739883663989679
Af1533 ------TP Ciclev10009600mscaffold_12211820322120791
Af1534 ------TP Ciclev10006429mscaffold_9883603885249
Af1535 ------TP Ciclev10007633mscaffold_12381411523817728
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Af1537 ------TP Ciclev10009797mscaffold_184171588419377
Af1538 ------TP Ciclev10002528mscaffold_53392198433926087
Af1539 ------TP Ciclev10016688mscaffold_21009730810100347
Af1540 ------TP Ciclev10006242mscaffold_9477388478920
Af1541 ------TP Ciclev10031567mscaffold_41051001810517939
Af1542 ------TP Ciclev10015820mscaffold_21042477910427904
Af1543 ------TP Ciclev10022165mscaffold_34218065042183843
Af1544 ------TP Ciclev10026596mscaffold_726229692624754
Af1545 ------TP Ciclev10032524mscaffold_421537182155194
Af1546 ------TP Ciclev10016821mscaffold_21240607812408794
Af1547 ------TP Ciclev10005907mscaffold_938647643867933
Af1548 ------TP Ciclev10012731mscaffold_62511421325116604
Af1549 ------TP Ciclev10009920mscaffold_121845132186967
Af1551 ------TP Ciclev10008489mscaffold_164949736502196
Af1552 ------TP Ciclev10005340mscaffold_93052706030531535
Af1553 ------TP Ciclev10023028mscaffold_34581258945815067
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Af1555 ------TP Ciclev10029189mscaffold_82450207024504031
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Af1558 ------TP Ciclev10005504mscaffold_92960846229612474
Af1559 ------TP Ciclev10005333mscaffold_922118622215512
Af1560 ------
Af1561 ------TP Ciclev10009643mscaffold_124203242423040
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Af1562b ------TP Ciclev10026749mscaffold_715307131532413
Af1564 ------TP Ciclev10015917mscaffold_22620663526210648
Af1565 ------TP Ciclev10008210mscaffold_12187502221879839
Af1566 ------TP Ciclev10011855mscaffold_61534613515348332
Af1567 ------TP Ciclev10016663mscaffold_22275934122763218
Af1568 ------J C_unshiu_00591:mRNA_15.1C_unshiu_00591108974112318Putative elongation factor 2-likeAGI-0124.954
Af1569 ------TP Ciclev10031754mscaffold_42319247223198396
Af1570 ------TP Ciclev10009899mscaffold_146015884603705
Af1571 ------TP Ciclev10010323mscaffold_12453306424536628
Af1572 ------TP Ciclev10027884mscaffold_82208423222091205
Af1573 ------TP Ciclev10026597mscaffold_71116335911165487
Af1574 ------TP Ciclev10011911mscaffold_61444465114447199
Af1575 ------TP Ciclev10029551mscaffold_81752483517526697J C_unshiu_02252:mRNA_4.1C_unshiu_0225279979032Photosystem II reaction center W proteinAGI-0856.724
Af1576 ------TP Ciclev10018636mscaffold_34156633841572373NoAGI-0547.986
Af1577 ------TP Ciclev10021651mscaffold_366029946605239
Af1578 ------TP Ciclev10023834mscaffold_34801606948017656
Af1579 ------TP Ciclev10006023mscaffold_97534878181
Af1580 ------TP Ciclev10016368mscaffold_23501384835015439J C_unshiu_00048:mRNA_76.1C_unshiu_00048512885514767NAD(P)-binding Rossmann-fold superfamily protein isoform 2AGI-0620.932
Af1581 ------TP Ciclev10024663mscaffold_32709241427093612
Af1583 ------TP Ciclev10006246mscaffold_92954972229551403
Af1584 ------TP Ciclev10026332mscaffold_71742421817426071
Af1585 ------TP Ciclev10026687mscaffold_734623533463444
Af1586 ------TP Ciclev10005733mscaffold_92311950223122347J C_unshiu_00148:mRNA_17.1C_unshiu_00148145165147922Glycoprotein family proteinAGI-0363.545
Af1587 ------TP Ciclev10022920mscaffold_33948338739486219
Af1588 ------TP Ciclev10028841mscaffold_867505036754741
Af1589 ------TP Ciclev10005524mscaffold_93099512930999295J C_unshiu_00003:mRNA_80.1C_unshiu_00003574672576940Peroxisomal 2,4-dienoyl-CoA reductaseAGI-0377.744
Af1590 ------TP Ciclev10017502mscaffold_293482929351074
Af1591 ------TP Ciclev10030412mscaffold_82367483323676979
Af1592 ------TP Ciclev10021425mscaffold_33759762437600961
Af1593 ------TP Ciclev10015971mscaffold_22773839727741912J C_unshiu_00745:mRNA_8.1C_unshiu_007458226585742Prolactin regulatory element-binding protein, putativeAGI-0661.501
Af1594 ------TP Ciclev10018838mscaffold_344011594407506
Af1595 ------TP Ciclev10022641mscaffold_390401819045543
Af1596 ------TP Ciclev10002542mscaffold_53796498937967950
Af1597 ------TP Ciclev10016480mscaffold_21348200513485923
Af1600 ------TP Ciclev10013134mscaffold_62275802722760875J C_unshiu_00038:mRNA_51.4C_unshiu_00038305110307864Negatively light-regulated proteinAGI-045.122
Af1601 ------TP Ciclev10026686mscaffold_742144234217517
Af1602 ------TP Ciclev10017370mscaffold_21335008213351899
Af1603 ------TP Ciclev10022774mscaffold_34297494742976794
Af1604 ------TP Ciclev10019587mscaffold_34713975647144124
Af1605 ------TP Ciclev10021314mscaffold_32629794926304739
Af1606 ------TP Ciclev10021248mscaffold_32489355124898675
Af1608 ------TP Ciclev10001692mscaffold_54229427042295612
Af1609 ------TP Ciclev10014451mscaffold_22453304424538470
Af1611 ------TP Ciclev10005702mscaffold_92271268822715627
Af1612 ------TP Ciclev10018748mscaffold_33078411930796076
Af1613 ------
Af1614 ------TP Ciclev10030819mscaffold_4204633209475
Af1615 ------TP Ciclev10001102mscaffold_53810866138114412
Af1616 ------TP Ciclev10014317mscaffold_22681759326820324
Af1617 ------TP Ciclev10014836mscaffold_2434537439663
Af1618 ------TP Ciclev10013090mscaffold_61439704714399928
Af1619 ------TP Ciclev10026784mscaffold_716086341610659J C_unshiu_00209:mRNA_18.2C_unshiu_00209147009148975Thioredoxin hAGI-0273.759
Af1620 ------TP Ciclev10026623mscaffold_72092263120924709
Af1621 ------TP Ciclev10004420mscaffold_91562673715638532
Af1622 ------TP Ciclev10008520mscaffold_11811726418119451J C_unshiu_00187:mRNA_23.3C_unshiu_00187141733143877Protochlorophyllide reductase, chloroplasticAGI-0154.754
Af1623 ------TP Ciclev10032683mscaffold_4612480615318J C_unshiu_01079:mRNA_2.2C_unshiu_0107931365814Thylakoid lumenal 15 kDa protein 1, chloroplasticAGI-077.907
Af1624 ------TP Ciclev10007512mscaffold_12492441624934675
Af1625 ------TP Ciclev10019825mscaffold_34894426148947832
Af1626 ------TP Ciclev10020385mscaffold_34720210947206941
Af1627 ------TP Ciclev10012518mscaffold_61419445414196761
Af1628 ------TP Ciclev10001249mscaffold_53480934534813138
Af1629 ------TP Ciclev10012332mscaffold_629695272973147J C_unshiu_00060:mRNA_62.1C_unshiu_00060539807543307Mitochondrial carnitine/acylcarnitine carrier protein CACLAGI-0739.420
Af1630 ------TP Ciclev10006127mscaffold_947024024704790
Af1631 ------TP Ciclev10015794mscaffold_23460919634614203
Af1632 ------TP Ciclev10006081mscaffold_9900723902354
Af1633 ------TP Ciclev10020304mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0767.201
Af1635 ------TP Ciclev10020874mscaffold_31851746918520307
Af1636 ------TP Ciclev10016216mscaffold_266118136619116J C_unshiu_00072:mRNA_53.1C_unshiu_00072416072423443Zinc transporter ZTP29AGI-06150.228
Af1637 ------TP Ciclev10008007mscaffold_11889616418901623
Af1638 ------TP Ciclev10004755mscaffold_92898497228989373J C_unshiu_00045:mRNA_79.1C_unshiu_00045556440562091TubulinAGI-0334.554
Af1639 ------TP Ciclev10012116mscaffold_62346248723466580J C_unshiu_00098:mRNA_36.1C_unshiu_00098239683243712Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1AGI-046.635
Af1640 ------TP Ciclev10005272mscaffold_92934236929345806
Af1641 ------TP Ciclev10021239mscaffold_33072184230725003
Af1642 ------TP Ciclev10015934mscaffold_23569324935696515
Af1643 ------TP Ciclev10021001mscaffold_338023873805494
Af1644 ------TP Ciclev10005467mscaffold_93110515831108119
Af1645 ------TP Ciclev10000427mscaffold_524728052477375J C_unshiu_00127:mRNA_11.1C_unshiu_001275220762775Class I (E and Q) tRNA synthetaseAGI-0990.878
Af1646 ------TP Ciclev10012239mscaffold_62512191925125183
Af1647 ------TP Ciclev10023615mscaffold_34953331849539442
Af1648 ------TP Ciclev10002024mscaffold_53455836234564638
Af1650 ------TP Ciclev10029248mscaffold_81927255119276355
Af1651 ------TP Ciclev10026767mscaffold_773130067315653
Af1653 ------TP Ciclev10002255mscaffold_53577694635779494
Af1654 ------TP Ciclev10020789mscaffold_33113356631137650
Af1655 ------TP Ciclev10020140mscaffold_34834813848351697
Af1656 ------TP Ciclev10031396mscaffold_424043532407969
Af1657 ------TP Ciclev10032070mscaffold_42258485222588013
Af1658 ------TP Ciclev10002760mscaffold_52616859426171673
Af1659 ------TP Ciclev10012047mscaffold_62191243821917736
Af1660 ------TP Ciclev10015583mscaffold_291648049166682
Af1662 ------TP Ciclev10021522mscaffold_34011621340124281
Af1663 ------TP Ciclev10031595mscaffold_42184132121845493
Af1666 ------TP Ciclev10019037mscaffold_330242953028262
Af1667 ------TP Ciclev10001644mscaffold_54245599442459424
Af1668 ------TP Ciclev10016828mscaffold_246604244661352
Af1669 ------TP Ciclev10021541mscaffold_34437108144373131
Af1670 ------TP Ciclev10011668mscaffold_61786790217874268
Af1671 ------TP Ciclev10016129mscaffold_22105708021059316
Af1672 ------TP Ciclev10004406mscaffold_919339271940744
Af1673 ------TP Ciclev10005691mscaffold_92974906329751434
Af1674 ------TP Ciclev10025184mscaffold_766398336644164
Af1675 ------TP Ciclev10024649mscaffold_327933652795811
Af1676 ------TP Ciclev10021429mscaffold_34142722141432461
Af1677 ------TP Ciclev10015358mscaffold_21548543715488234
Af1678 ------TP Ciclev10022810mscaffold_34319276243194352
Af1679 ------TP Ciclev10021896mscaffold_342601264262819J C_unshiu_00186:mRNA_34.1C_unshiu_00186288266290432Adenylate kinaseAGI-0529.035
Af1680 ------TP Ciclev10032474mscaffold_42091750920920961
Af1681 ------TP Ciclev10015215mscaffold_22316367323168238
Af1682 ------TP Ciclev10016706mscaffold_22015346020156597
Af1683 ------TP Ciclev10016632mscaffold_2475374478428
Af1684 ------TP Ciclev10022811mscaffold_31290146312904143
Af1685 ------TP Ciclev10023782mscaffold_34008698540089114J C_unshiu_00335:mRNA_9.1C_unshiu_003357616477436Hypothetical proteinAGI-0556.481
Af1686 ------TP Ciclev10028970mscaffold_823927632395622
Af1687 ------
Af1688 ------TP Ciclev10001114mscaffold_54287580342879044
Af1689 ------TP Ciclev10015519mscaffold_22876164928766750
Af1690 ------TP Ciclev10032651mscaffold_42392375723925178J C_unshiu_00001:mRNA_137.1C_unshiu_00001920379924128Hypothetical proteinAGI-0777.752
Af1691 ------TP Ciclev10006090mscaffold_9627373629617
Af1692 ------TP Ciclev10014767mscaffold_2691427698055
Af1693 ------TP Ciclev10016657mscaffold_23206914932072079J C_unshiu_00027:mRNA_31.2C_unshiu_00027205885208484DERLIN-2.2 isoform 1AGI-0635.794
Af1694 ------TP Ciclev10025863mscaffold_727035802705194
Af1695 ------TP Ciclev10008653mscaffold_12461912624621953
Af1697 ------TP Ciclev10028382mscaffold_814245511429767
Af1698 ------TP Ciclev10016574mscaffold_268801116883726
Af1699 ------TP Ciclev10014381mscaffold_269270816932080
Af1700 ------TP Ciclev10004322mscaffold_91850229318505531J C_unshiu_00138:mRNA_34.1C_unshiu_00138182719186200Putative receptor protein kinase TMK1AGI-0354.060
Af1752 ------TP Ciclev10009349mscaffold_1177116180417
Af1838 ------TP Ciclev10001534mscaffold_565997116604334
Af1883 ------TP Ciclev10008999mscaffold_12525575825259340
Af2001 ------TP Ciclev10007327mscaffold_12533768725347002
Af2022 ------TP Ciclev10002788mscaffold_599767579977512
Af2042 ------TP Ciclev10008181mscaffold_135214853525524
Af2075 ------TP Ciclev10032164mscaffold_42280120322802540
Af2143 ------TP Ciclev10010213mscaffold_1149283154945
Af2250 ------TP Ciclev10000615mscaffold_54306044243066562
Af2318 ------TP Ciclev10008753mscaffold_12522797825233897
Af2344 ------TP Ciclev10002506mscaffold_54305157943053394
Af2392 ------TP Ciclev10002611mscaffold_53920402539206398
Af2525 ------
Af2558 ------TP Ciclev10022119mscaffold_34974045449743754
Af2596 ------TP Ciclev10002840mscaffold_53815497538155769J C_unshiu_00319:mRNA_29.1C_unshiu_00319189073189599Basic blue proteinAGI-0957.830
Af2704 ------TP Ciclev10012216mscaffold_62113242721135018
Af2786 ------TP Ciclev10029628mscaffold_82054718020549390
Af2820 ------TP Ciclev10000836mscaffold_54243764342442753
Af2871 ------TP Ciclev10019876mscaffold_33006633930070903
Af2893 ------TP Ciclev10025356mscaffold_717394431743149J C_unshiu_01334:mRNA_6.1C_unshiu_013342586329359Putative mitochondrial chaperone BCS1-BAGI-0273.779
Af3016 ------TP Ciclev10025718mscaffold_773460317350895
Af3017 ------TP Ciclev10031492mscaffold_42440184124406470J C_unshiu_00001:mRNA_224.1C_unshiu_0000114157781420221Serine/threonine-protein kinase PBS1AGI-0783.217
Af3023 ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putativeAGI-0221.337
Af3039 ------TP Ciclev10000497mscaffold_585732818583459
Af3114 ------
Af3132 ------TP Ciclev10012712mscaffold_636548393656896
Af3142 ------TP Ciclev10032672mscaffold_494128649416686
Af3188 ------TP Ciclev10007898mscaffold_1448785452457
Af3215 ------TP Ciclev10009264mscaffold_12532207825323384
Af3218 ------TP Ciclev10005768mscaffold_92715479927158226
Af3244 ------TP Ciclev10002793mscaffold_584351238435971
Af3288 ------TP Ciclev10008476mscaffold_1385469388179
Af3392 ------TP Ciclev10013692mscaffold_61824877718250446
Af3400 ------TP Ciclev10002005mscaffold_54306809343070554
Af3466 ------
Af3471 ------TP Ciclev10002308mscaffold_51220183612206033
Af3599 ------TP Ciclev10008985mscaffold_12833081028332669
Af3712 ------
Af3785 ------TP Ciclev10025208mscaffold_759326645935568
Af3808 ------TP Ciclev10002466mscaffold_5176650180562
Af3822 ------TP Ciclev10004695mscaffold_954942545497030J C_unshiu_00164:mRNA_13.1C_unshiu_001647405975936Phosphate transporterAGI-0344.864
Al0001 ------J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0362.228JtR-03117.616
Al0003Al0003.2 ------TP Ciclev10024637mscaffold_34169705241697860J C_unshiu_01778:mRNA_2.1C_unshiu_017782736228139Dehydrin COR15AGI-0549.499
Al0004 ------TP Ciclev10011410mscaffold_62415711524161063
Al0005 ------TP Ciclev10016064mscaffold_23203236532035492
Al0006 ------TP Ciclev10030549mscaffold_428232002830227
Al0007 ------
Al0008 ------TP Ciclev10001908mscaffold_54031772140321609J C_unshiu_00054:mRNA_1.1C_unshiu_000545765867426S proteasome non-ATPase regulatory subunit 14SA-0950.699
Al0009 ------TP Ciclev10004753mscaffold_936889733692790
Al0011Al0010.2 ------TP Ciclev10012654mscaffold_61031699910318328J C_unshiu_00806:mRNA_1.2C_unshiu_008062130522892PolyubiquitinAGI-0346.768
Al0012 ------TP Ciclev10029110mscaffold_853247925326835
Al0013Al0012.2 ------TP Ciclev10029110mscaffold_853247925326835
Al0014 O-----SI058,SI153,SI312TP Ciclev10008225mscaffold_110703731072218J C_unshiu_00005:mRNA_43.1C_unshiu_00005281165283012CBL-interacting serine/threonine-protein kinase 20AGI-0197.525RP-013.295
Al0015 ------TP Ciclev10033914mscaffold_42507143125077010
Al0016 ------TP Ciclev10002413mscaffold_521895842190474
Al0017 ------
Al0018 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinRP-0823.447
Al0019 ------TP Ciclev10012798mscaffold_61173963411741636
Al0020 OOthers ------TP Ciclev10012552mscaffold_62336430323366061J C_unshiu_00098:mRNA_21.1C_unshiu_00098143026144827Allene oxide cyclaseKmG-04
Al0021 ------TP Ciclev10028327mscaffold_856920755697304
Al0022 ------TP Ciclev10011465mscaffold_62536431725368608J C_unshiu_00009:mRNA_62.1C_unshiu_00009346583350755Mitochondrial-processing peptidase subunit alphaSA-0942.503
Al0023 ------TP Ciclev10014721mscaffold_22747990727486732
Al0024.2 ------TP Ciclev10020911mscaffold_33786340737865625
Al0025 ------TP Ciclev10020434mscaffold_34858445548588112
Al0027 ------TP Ciclev10009909mscaffold_12478760024788444
Al0028 ------TP Ciclev10016123mscaffold_21160495611606340J C_unshiu_00957:mRNA_11.1C_unshiu_009573850839910Xyloglucan endotransglucosylase/hydrolase protein ARP-06.128.573
Al0029 Bno homozygous cultivar with minor allele O-----J C_unshiu_00305:mRNA_10.1C_unshiu_003056993873026Basic helix-loop-helix transcription factorAGI-0137.357JtR-01S50.000
Al0030 ------TP Ciclev10032368mscaffold_41842306318426424
Al0031 ------TP Ciclev10000645mscaffold_51353193713535930
Al0032 O-----TP Ciclev10020029mscaffold_35084105150845732
Al0034 ------TP Ciclev10032830mscaffold_41794454517945441
Al0035 ------TP Ciclev10028970mscaffold_823927632395622
Al0036 ------TP Ciclev10021716mscaffold_34157681341581730
Al0037 ------TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0037.2Al0037.k O-----TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0038 ------TP Ciclev10006081mscaffold_9900723902354
Al0039 ------J C_unshiu_00018:mRNA_107.1C_unshiu_00018723553725648Bifunctional protein FolDAGI-0595.305
Al0201 ULess informative for main cultivars ------TP Ciclev10014752mscaffold_23278083032782885J C_unshiu_00153:mRNA_49.1C_unshiu_00153346248348256Armadillo/beta-catenin-like repeat family protein, expressed
Al0202 ------TP Ciclev10005495mscaffold_91274084612745213
Al0203 ------TP Ciclev10000021mscaffold_53959330939602756
Al0204 ------TP Ciclev10008298mscaffold_1275263280936J C_unshiu_00003:mRNA_150.2C_unshiu_0000311278841133567Myosin heavy chain-like proteinJtR-09S5.527
Al0205 ------TP Ciclev10028714mscaffold_8324145327011
Al0206 AAvailable marker ----OOTP Ciclev10032727mscaffold_41230948012311438J C_unshiu_00365:mRNA_26.1C_unshiu_00365192643194502NADPH-dependent codeinone reductase-like proteinAGI-0738.565JtR-0752.611RP-0729.935
Al0207 OOthers ------TP Ciclev10020027mscaffold_343668024370111J C_unshiu_00186:mRNA_18.1C_unshiu_00186178635181547SNF1-related protein kinase regulatory subunit gamma-1AGI-0984.537JtR-09S9.929
Al0208 O-----TP Ciclev10001155mscaffold_54059727240598741
Al0209 HDisagree on Clementine haploid genotype ------TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical proteinKmG-0137.230JtR-01S88.382
Al0210 MDisagree by Marco analysis ------TP Ciclev10025724mscaffold_767471396750382J C_unshiu_00166:mRNA_28.1C_unshiu_00166205256208771Eukaryotic initiation factor 4A-10KmG-0234.998JtR-0215.126
Al0212 O-----TP Ciclev10026128mscaffold_752580455259521J C_unshiu_00288:mRNA_19.1C_unshiu_00288142758144183Mitochondrial uncoupling protein 3KmG-0243.821JtR-0230.507RP-08
Al0213 ------
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Al0221 ------
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Al0223 ------TP Ciclev10011771mscaffold_61743827017440122J C_unshiu_00008:mRNA_127.1C_unshiu_00008890026891371CBL-interacting serine/threonine-protein kinase 11RP-0417.965
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Al0225 ------TP Ciclev10001539mscaffold_54109372541097411J C_unshiu_01543:mRNA_6.1C_unshiu_015433410635343DNA glycosylase superfamily proteinKmG-019.277
Al0226 ------TP Ciclev10012002mscaffold_625719412573984
Al0227 ------TP Ciclev10001654mscaffold_54221793542222257
Al0228 ------TP Ciclev10009018mscaffold_12620606326208427J C_unshiu_00315:mRNA_25.1C_unshiu_00315212819220361Serine/threonine-protein kinase HT1JtR-0347.115
Al0229 ------TP Ciclev10018463mscaffold_34967535449684423
Al0230 ------
Al0231 ------TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609ShatterproofRP-06.17.272
Al0232 ------TP Ciclev10026186mscaffold_749970894999255
Al0234 OOthers ------TP Ciclev10005909mscaffold_913729721374927J C_unshiu_00369:mRNA_20.1C_unshiu_003697403474546Ribosomal protein L19KmG-0316.974NAT-0347.094RP-033.219
Al0235 ------TP Ciclev10009395mscaffold_12576157025764926
Al0236 ------TP Ciclev10014723mscaffold_23280656532812384
Al0237 ------TP Ciclev10026739mscaffold_755230755524475
Al0238 ------TP Ciclev10017077mscaffold_284943698496454
Al0239 Bno homozygous cultivar with minor allele ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putative
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Al0241 ------TP Ciclev10012288mscaffold_61785784917860063
Al0242 ------TP Ciclev10032030mscaffold_434375773441367
Al0243 ------TP Ciclev10013041mscaffold_62009203320095946
Al0244 ------TP Ciclev10015497mscaffold_298491339852098
Al0245 ------TP Ciclev10005107mscaffold_92518520025188839
Al0246 ------TP Ciclev10019351mscaffold_34421533344220917
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Al0248 ------TP Ciclev10028483mscaffold_81977979519784134
Al0249 ------TP Ciclev10004782mscaffold_93049033130496586
Al0250 ------TP Ciclev10031445mscaffold_42477075424773948
Al0251 ------TP Ciclev10021340mscaffold_366951716697430
Al0252 ------TP Ciclev10028251mscaffold_82468998924692884
Al0256 ------TP Ciclev10028637mscaffold_81953813819541255
Al0257Al0257.k ------TP Ciclev10008444mscaffold_12240741222409529
Al0301 ------TP Ciclev10022576mscaffold_34590687945907641
Al0302 AAvailable marker -O--OOSI090,SI311TP Ciclev10004372mscaffold_92507369325080376J C_unshiu_00119:mRNA_33.1C_unshiu_00119346131352710Putative seed imbibition proteinAGI-0348.375KmG-03218.339JtR-033NAT-033.773RP-0336.113
Al0303 ------TP Ciclev10029291mscaffold_82443106424433341
Al0304 MDisagree by Marco analysis ------SI259,SI293TP Ciclev10013536mscaffold_62261697922619271J C_unshiu_00038:mRNA_27.1C_unshiu_00038174815175255Nutrient reservoir, putativeAGI-0446.361KmG-0416.744NAT-04RP-0454.617
Al0305 ------TP Ciclev10021551mscaffold_34720005547201893
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Al0309 AAvailable marker O----OTP Ciclev10022019mscaffold_34490005944900865J C_unshiu_00069:mRNA_47.1C_unshiu_00069301188317479Hypothetical proteinKmG-05S73.967JtR-0538.749RP-0586.332
Al0310Al0309.2 ------TP Ciclev10022019mscaffold_34490005944900865
Al0311 ------TP Ciclev10020637mscaffold_354563365459361
Al0312 ------TP Ciclev10021037mscaffold_341449394148359
Al0313 AAvailable marker O---OOTP Ciclev10011272mscaffold_62396603923969583J C_unshiu_00133:mRNA_4.2C_unshiu_001332248526003Putative phosphatidylinositol 4-kinase type 2-betaAGI-0438.152KmG-049.748
Al0314 ------TP Ciclev10009591mscaffold_125747692577568
Al0315 ------TP Ciclev10028656mscaffold_849053414909930
Al0316 O-----TP Ciclev10021599mscaffold_34091814840922656
Al0317 ------TP Ciclev10021392mscaffold_330062183008357J C_unshiu_00092:mRNA_60.1C_unshiu_00092425854427887CASP-like protein 4A2KmG-05S16.871JtR-059.525
Al0318Al0318.2 AAvailable marker -----OTP Ciclev10021392mscaffold_330062183008357
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Al0320 ------TP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Al0320.2Al0320.em AAvailable marker -----OTP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Al0321.2 MDisagree by Marco analysis ------TP Ciclev10020878mscaffold_3541575543121
Al0322 ------TP Ciclev10002194mscaffold_53480135234804440
Al0323 OOthers ------TP Ciclev10012875mscaffold_61818813918189060
Al0324 MDisagree by Marco analysis ------TP Ciclev10029315mscaffold_82042428720425903J C_unshiu_00320:mRNA_1.2C_unshiu_003201275814314Hypothetical proteinAGI-0841.127NAT-08231.019RP-0817.081
Al0325 ------
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Al0327Al0326.2 ------TP Ciclev10022558mscaffold_364093116411254
Al0328 ------TP Ciclev10006155mscaffold_92995200529956306
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Al0330 ------TP Ciclev10009377mscaffold_174554927457451
Al0331 AAvailable marker -----OTP Ciclev10033190mscaffold_484066328407188J C_unshiu_00111:mRNA_9.1C_unshiu_001118353184087Hypothetical proteinKmG-099.593JtR-0752.611RP-0719.079
Al0332 ------TP Ciclev10032086mscaffold_41489572814896991
Al0333 ------TP Ciclev10004130mscaffold_939545073961401
Al0334 ------TP Ciclev10008488mscaffold_11811394918117209
Al0335 ------TP Ciclev10021844mscaffold_361312146135849
Al0336 ------TP Ciclev10001109mscaffold_53591738435925361
Al0337 ------TP Ciclev10025556mscaffold_764374066440864
Al0401 OOthers O-----TP Ciclev10025346mscaffold_71318056713191638J C_unshiu_01698:mRNA_6.1C_unshiu_016983933640206Hypothetical proteinKmG-0226.204JtR-02-6.043NAT-02S22.960
Al0402 AAvailable marker O---OOJ C_unshiu_00008:mRNA_88.1C_unshiu_00008564906567158Peptide upstream ORF protein, putativeAGI-0881.190KmG-0444.163NAT-0428.388
Al0403 ------TP Ciclev10007559mscaffold_12680278726810465
Al0404 ------TP Ciclev10025902mscaffold_740157354020920
Al0405 ------TP Ciclev10024622mscaffold_33002199830023908
Al0406 ------
Al0407 AAvailable marker O---OOTP Ciclev10009315mscaffold_12657605926578193J C_unshiu_00131:mRNA_17.1C_unshiu_0013112115212318360S ribosomal protein L7AGI-0131.240KmG-0115.673JtR-01S57.666RP-0179.425
Al0408 O-----TP Ciclev10031487mscaffold_42373775723740513J C_unshiu_00001:mRNA_109.1C_unshiu_00001727392729266F-box/kelch-repeat protein SKIP11AGI-0775.917KmG-0713.235JtR-071.788
Al0409 Bno homozygous cultivar with minor allele O-----SI201,SI252TP Ciclev10024949mscaffold_750425085046271NoAGI-0250.758KmG-0244.930JtR-0229.462NAT-02S90.742
Al0410 ------TP Ciclev10026113mscaffold_777397827742295
Al0411 AAvailable marker O---OOTP Ciclev10029439mscaffold_81976007719761961J C_unshiu_00011:mRNA_19.2C_unshiu_00011188649189649Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0840.857
Al0412 ------TP Ciclev10023374mscaffold_32561274125615635
Al0413 AAvailable marker ---OOOSI275,SI299TP Ciclev10004620mscaffold_975799007583093J C_unshiu_00063:mRNA_61.1C_unshiu_00063483279486427Chloroplast beta-amylase 3AGI-0346.197KmG-03219.570JtR-03110.395RP-0333.559
Al0414 ------TP Ciclev10014243mscaffold_23477523234780330
Al0415 AAvailable marker ----OOSI120,SI310TP Ciclev10004660mscaffold_927329002738896J C_unshiu_00040:mRNA_76.1C_unshiu_00040632823638463Mitogen-activated protein kinase 14AGI-0324.885KmG-031NAT-0341.576
Al0416 OOthers ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00639:mRNA_12.1C_unshiu_006399069899467Elongation factor 1-alphaAGI-0823.023JtR-0760.405NAT-08221.126
Al0417 MDisagree by Marco analysis O-----SI244,SI255TP Ciclev10015483mscaffold_23521269135214865J C_unshiu_00048:mRNA_50.1C_unshiu_00048328418330513Kelch repeat-containing F-box family proteinAGI-0620.297KmG-0662.256NAT-06S56.647
Al0418 ------TP Ciclev10004717mscaffold_92776551527767561
Al0419 OOthers O-----TP Ciclev10005894mscaffold_924528532455181J C_unshiu_00394:mRNA_25.1C_unshiu_00394150531152208Hypothetical proteinAGI-0317.378KmG-099.593JtR-09S7.976
Al0420 ------TP Ciclev10011827mscaffold_62306802623072168
Al0421 OOthers ------TP Ciclev10011875mscaffold_61178295211785527
Al0422 T3 or more alleleic model O-----TP Ciclev10013176mscaffold_61449547314496662J C_unshiu_00032:mRNA_34.1C_unshiu_00032369423370581Subtilisin inhibitor 1, putativeAGI-0893.695
Al0423Al0422.2 ------TP Ciclev10013176mscaffold_61449547314496662
Al0424 ------TP Ciclev10005576mscaffold_92549337825500370
Al0425 ------TP Ciclev10013630mscaffold_612907091292040
Al0426 ------TP Ciclev10007391mscaffold_111288971137063
Al0427Al0247.em ------TP Ciclev10016829mscaffold_22369588123697100
Al0501 Bno homozygous cultivar with minor allele ------TP Ciclev10012221mscaffold_61462588414628443J C_unshiu_00032:mRNA_48.1C_unshiu_00032462609490932Tropinone reductase I
Al0502 ------TP Ciclev10011657mscaffold_62146433521470434
Al0503 ------TP Ciclev10011469mscaffold_62123690321242261
Al0504 ------TP Ciclev10015664mscaffold_23527368835277908
Al0505 ------TP Ciclev10032306mscaffold_4947943949892J C_unshiu_00012:mRNA_14.1C_unshiu_00012117194125051Plasma membrane intrinsic proteinRP-0751.815
Al0506 ------TP Ciclev10005101mscaffold_93083643530841216
Al0507 ------TP Ciclev10002395mscaffold_51728972317290702
Al0508 ------TP Ciclev10017102mscaffold_23592018635922196
Al0509 ------TP Ciclev10001812mscaffold_53986276239864726
Al0510 ------TP Ciclev10008176mscaffold_12279292022795069
Al0511 ------TP Ciclev10020158mscaffold_32505342525057795
Al0512 ------TP Ciclev10026719mscaffold_742807124281481
Al0513 OOthers ------TP Ciclev10009222mscaffold_180461818049306J C_unshiu_00191:mRNA_21.1C_unshiu_00191243988246458Stem 28 kDa glycoproteinAGI-0160.031KmG-0141.591
Al0514 ULess informative for main cultivars ------TP Ciclev10012145mscaffold_62103591021038368J C_unshiu_00052:mRNA_38.1C_unshiu_00052265461267883Fructose-bisphosphate aldolase, cytoplasmic isozymeKmG-0432.217
Al0515 Bno homozygous cultivar with minor allele O-----SI178TP Ciclev10030023mscaffold_826731352674232J C_unshiu_00152:mRNA_38.1C_unshiu_00152273851275034DNA-damage-repair/toleration protein DRT100AGI-0873.663JtR-0814.154NAT-08110.596
Al0516 ------TP Ciclev10019134mscaffold_359810665985524
Al0517 AAvailable marker ----OOTP Ciclev10028293mscaffold_825724392574295J C_unshiu_00363:mRNA_1.1C_unshiu_0036358927583Limonoid glucosyltransferaseAGI-0874.016JtR-0815.435
Al0518 ------TP Ciclev10011450mscaffold_62330638623311678
Al0519 DDominant marker O-----TP Ciclev10015260mscaffold_21583314215836770NoRP-06.1
Al0520 ------TP Ciclev10026756mscaffold_783106158313304
Al0521 ------TP Ciclev10029787mscaffold_82313675323137537
Al0522 ------TP Ciclev10008765mscaffold_12108290221086082
Al0523 ------TP Ciclev10009349mscaffold_1177116180417
Al0524 AAvailable marker OO--OOSI043,SI341TP Ciclev10031723mscaffold_4115362118025J C_unshiu_02038:mRNA_4.1C_unshiu_020383425638775Hypothetical proteinAGI-075.972JtR-0776.060RP-0774.381
Al0525 OOthers O-----TP Ciclev10026706mscaffold_7252320254023J C_unshiu_00312:mRNA_20.2C_unshiu_00312114652116351High mobility group (HMG)-box proteinAGI-0138.939KmG-0141.081
Al0526Al0526.em ------TP Ciclev10008628mscaffold_11829859918300295
Al0601 ------J C_unshiu_00065:mRNA_8.1C_unshiu_000653926843421Probable GTP diphosphokinase RSH2, chloroplasticAGI-0893.624
Al0602 AAvailable marker -----OTP Ciclev10017248mscaffold_22714114827141869J C_unshiu_00017:mRNA_42.1C_unshiu_00017304994305523Hypothetical proteinKmG-0618.450JtR-06S3.805
Al0603 ------TP Ciclev10007714mscaffold_11332581313336158
Al0604 ------TP Ciclev10000084mscaffold_53379119433800828
Al0604.2Al0604.k ------TP Ciclev10000084mscaffold_53379119433800828
Al0605 OOthers ------TP Ciclev10022151mscaffold_34143406441437122J C_unshiu_00194:mRNA_5.1C_unshiu_001943856941571Eukaryotic translation initiation factor 4EAGI-0548.750KmG-05S65.384
Al0606.2 ------
Al0607 ------TP Ciclev10016035mscaffold_23616329036165355
Al0608 ------TP Ciclev10002359mscaffold_564408026444240
Al0609 ------TP Ciclev10001329mscaffold_54226515342269676
Al0610 ------TP Ciclev10028696mscaffold_82388510323890220
Al0611 ------
Al0612 Bno homozygous cultivar with minor allele ------TP Ciclev10001524mscaffold_52948181729485113J C_unshiu_01370:mRNA_2.1C_unshiu_013702701430283UDP-glucuronic acid decarboxylase 1KmG-0928.332JtR-09S32.873
Al0613 ------TP Ciclev10031928mscaffold_42307823223081009
Al0614 ------TP Ciclev10022348mscaffold_34498771944991534J C_unshiu_00069:mRNA_32.1C_unshiu_00069220620224375Methyl-CpG-binding domain 4AGI-0556.788KmG-0635.565
Al0615 ------TP Ciclev10014304mscaffold_22260737522611126
Al0616 ------TP Ciclev10007561mscaffold_143438124351112
Al0617 AAvailable marker O---OOTP Ciclev10033546mscaffold_410211791023023J C_unshiu_00012:mRNA_24.1C_unshiu_00012188654191971Ubiquitin-binding WIYLD domain proteinAGI-078.553JtR-0774.121
Al0618 AAvailable marker ----OOTP Ciclev10000916mscaffold_54087279340877775J C_unshiu_00123:mRNA_34.1C_unshiu_00123204269222067Phosphatase 2c, putative isoform 6AGI-0938.004KmG-0973.330
Al0619 ------TP Ciclev10005142mscaffold_922340662238313J C_unshiu_00311:mRNA_12.1C_unshiu_003115593360057TLP domain class transcription factorAGI-0157.863KmG-0139.698
Al0620 OOthers ------TP Ciclev10025816mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinKmG-0236.964JtR-0217.013
Al0621 Bno homozygous cultivar with minor allele O-----TP Ciclev10025875mscaffold_745755034577125J C_unshiu_00656:mRNA_8.1C_unshiu_006563294034329Hypothetical proteinAGI-0260.566KmG-0247.196JtR-0228.472
Al0622 ------TP Ciclev10006115mscaffold_951520125155157
Al0623 ------TP Ciclev10004560mscaffold_956486395654374
Al0624 ------TP Ciclev10021584mscaffold_34264741342652459J C_unshiu_01228:mRNA_6.1C_unshiu_012284361748513Tetraspanin family proteinAGI-0529.354
Al0625 AAvailable marker O---OOSI329J C_unshiu_00139:mRNA_45.1C_unshiu_00139346138349862Regulator of chromosome condensation family proteinAGI-0466.455RP-0423.717
Al0626 ------
Al0627 HDisagree on Clementine haploid genotype O-----TP Ciclev10025602mscaffold_7128539131642J C_unshiu_00706:mRNA_3.1C_unshiu_007061659018098Trigalactosyldiacylglycerol 1 isoform 1AGI-0278.531
Al0628 ------TP Ciclev10004696mscaffold_92897433728977865J C_unshiu_00045:mRNA_76.1C_unshiu_00045547196550605O-glucosyltransferase rumi likeKmG-0315.650
Al0629 ------
Al0630 AAvailable marker O----OTP Ciclev10008681mscaffold_1487184489198J C_unshiu_00129:mRNA_38.1C_unshiu_00129342865344872Kelch repeat-containing F-box family proteinRP-011.092
Al0631 ------TP Ciclev10008689mscaffold_12009629720101958
Al0632 HDisagree on Clementine haploid genotype O-----TP Ciclev10028775mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeAGI-0856.724JtR-0818.952
Al0633 OOthers O----OSI123TP Ciclev10015092mscaffold_23383740333842156J C_unshiu_00002:mRNA_126.1C_unshiu_00002901824911260Vascular plant one zinc finger protein isoform 1KmG-0655.857JtR-06S59.645NAT-06S51.106RP-06.227.837
Al0634 OOthers ------TP Ciclev10002460mscaffold_52940084629403554
Al0635 AAvailable marker ----OOTP Ciclev10015354mscaffold_22643554026438838J C_unshiu_00197:mRNA_27.1C_unshiu_00197251131253300GAGA-binding transcriptional activatorAGI-0669.195KmG-0615.268JtR-06S1.903NAT-06S7.869
Al0635.2Al0635.k ------TP Ciclev10015354mscaffold_22643554026438838
Al0636 AAvailable marker O--OOOSI313TP Ciclev10007493mscaffold_12377679623782088J C_unshiu_00080:mRNA_56.1C_unshiu_00080464290469444WW domain-containing proteinAGI-0127.489KmG-0125.751JtR-01S63.210NAT-01S12.652RP-0148.896
Al0637 AAvailable marker O----OSI353TP Ciclev10019147mscaffold_329396202941934J C_unshiu_00092:mRNA_51.1C_unshiu_00092363486365791Spotted leaf protein, putative
Al0638 OOthers O-----TP Ciclev10027380mscaffold_786620418665543J C_unshiu_00221:mRNA_2.1C_unshiu_00221665810157VHS domain-containing proteinKmG-0723.435JtR-0717.224NAT-0724.049
Al0639 AAvailable marker O---OOTP Ciclev10001091mscaffold_54170378741708779J C_unshiu_00009:mRNA_141.1C_unshiu_00009874868888901IQ calmodulin-binding motif proteinAGI-0170.494KmG-0148.992JtR-01S110.675NAT-01S94.639RP-0128.746
Al0640 ------TP Ciclev10020536mscaffold_34567958145683773
Al0641 ------TP Ciclev10017193mscaffold_23362449233626591
Al0642 ------TP Ciclev10012548mscaffold_61110064711103340
Al0643 ------TP Ciclev10012685mscaffold_61112665811131076J C_unshiu_02977:mRNA_1.1C_unshiu_0297719502673Dolichyldiphosphatase 1AGI-0856.724
Al0644 ------TP Ciclev10011184mscaffold_62523787225242427
Al0645 ------TP Ciclev10033996mscaffold_4356772358913
Al0646 ------TP Ciclev10015589mscaffold_244611514463605
Al0647 MDisagree by Marco analysis O-----TP Ciclev10016069mscaffold_23264074332643349J C_unshiu_00070:mRNA_53.1C_unshiu_00070403765406305Nitric oxide synthase-interacting protein homologAGI-06KmG-0646.877
Al0648 ------TP Ciclev10001973mscaffold_52699057926995388
Al0649Al0649.snA ------TP Ciclev10032578mscaffold_42104204921048279
Bf0001 ------TP Ciclev10016890mscaffold_21228139512282562
Bf0003 ULess informative for main cultivars O-----SI354TP Ciclev10011720mscaffold_61624677316250769J C_unshiu_00390:mRNA_6.1C_unshiu_003907579978947Vacuolar cation/proton exchanger 3RP-0410.253
Bf0004 ------SI273TP Ciclev10005212mscaffold_92956300329568705J C_unshiu_00056:mRNA_33.1C_unshiu_00056220997225323Pentatricopeptide repeat superfamily protein, putative isoform 1AGI-0358.312
Bf0005 ------SI194TP Ciclev10005100mscaffold_9465444468143J C_unshiu_00007:mRNA_115.1C_unshiu_00007710354712926Phosphatase 2C family proteinAGI-038.177
Bf0006 ------TP Ciclev10032578mscaffold_42104204921048279
Bf0007 ------TP Ciclev10030544mscaffold_41994742919954736
Bf0008 ------SI309TP Ciclev10012950mscaffold_62246756522470029J C_unshiu_00038:mRNA_5.1C_unshiu_000384098343503Pollen-specific C2 domain containing proteinAGI-0447.391RP-0450.862
Bf0009 ------TP Ciclev10000845mscaffold_52686603626868420
Bf0010 ------TP Ciclev10019927mscaffold_34833710548339028
Bf0011 AAvailable marker O---OOSI218TP Ciclev10008900mscaffold_147228894726339J C_unshiu_00547:mRNA_9.1C_unshiu_005475455657654NADH-cytochrome b5 reductaseAGI-0167.331RP-0123.653
Bf0013 O-----TP Ciclev10008507mscaffold_12311173323116067NoAGI-01RP-0147.360
Bf0016 O-----TP Ciclev10002605mscaffold_53578241935784765J C_unshiu_00255:mRNA_23.1C_unshiu_00255146364148653Protein CutA 1, chloroplasticRP-0967.943
Bf0017 ------TP Ciclev10031215mscaffold_421311582133384
Bf0019 ------TP Ciclev10028586mscaffold_8232123235806J C_unshiu_00376:mRNA_8.1C_unshiu_003767247476027Putative serine/threonine-protein kinase Cx32RP-04
Bf0020 ------TP Ciclev10005107mscaffold_92518520025188839J C_unshiu_00119:mRNA_25.1C_unshiu_00119238437248656Guanylate kinaseAGI-0347.887RP-0337.189
Bf0021 O-----TP Ciclev10031010mscaffold_410588251062698J C_unshiu_00012:mRNA_26.1C_unshiu_00012227838231495Anthranilate synthase component IRP-0752.587
Bf0022 ------TP Ciclev10008584mscaffold_166283886634237
Bf0024 O-----SI093TP Ciclev10002093mscaffold_53813466238138860J C_unshiu_00319:mRNA_24.1C_unshiu_00319167810171973Probable protein phosphatase 2C 11AGI-0539.006
Bf0025 ------TP Ciclev10008159mscaffold_174027307407596
Bf0026 ------TP Ciclev10008765mscaffold_12108290221086082J C_unshiu_00487:mRNA_12.1C_unshiu_00487113166115416Thiazole biosynthetic enzymeAGI-0143.164RP-0156.137
Bf0027 ------SI372TP Ciclev10032632mscaffold_41456545614567860J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0740.515
Bf0028 DDominant marker O--O--SI001TP Ciclev10014319mscaffold_23535477635363026J C_unshiu_00048:mRNA_32.1C_unshiu_00048179733188796Soluble starch synthase III-1AGI-0617.966
Bf0029 MDisagree by Marco analysis ---O--SI193,SI283J C_unshiu_00564:mRNA_19.1C_unshiu_00564138967142178Limonene synthaseAGI-0984.912KmG-0924.379JtR-09S5.526
Bf0030 O-----TP Ciclev10022841mscaffold_34645289346453717J C_unshiu_00627:mRNA_10.1C_unshiu_006274521545931Calvin cycle protein CP12RP-0558.661
Bf0031 O-----TP Ciclev10031547mscaffold_440775574083819J C_unshiu_00306:mRNA_12.1C_unshiu_003065170757589Chorismate synthaseAGI-0732.590RP-0719.092
Bf0032 O-----TP Ciclev10030771mscaffold_453789835392182
Bf0033 ------SI356,SI379TP Ciclev10007537mscaffold_12720499827211059J C_unshiu_00347:mRNA_22.1C_unshiu_00347166830172467NADPH--hemoprotein reductaseAGI-0132.408RP-0185.146
Bf0034 ------TP Ciclev10032747mscaffold_41682125516823718
Bf0036 AAvailable marker OO-OOOTP Ciclev10008751mscaffold_12284094722844111J C_unshiu_00103:mRNA_45.1C_unshiu_00103244231250643GrpE protein homologAGI-0129.144RP-0146.445
Bf0101 ------TP Ciclev10003680mscaffold_53291782632924241J C_unshiu_00229:mRNA_13.1C_unshiu_002295743862744Hypothetical proteinNAT-0950.353
Bf0102 ------TP Ciclev10001348mscaffold_54239061642395712
Bf0103 ------TP Ciclev10021205mscaffold_385562418560871
Bf0104 O-----J C_unshiu_01101:mRNA_8.1C_unshiu_01101776948095112-oxophytodienoate reductase 2AGI-0541.306NAT-05
Bf0106 ------
Bf0107 ------
Bf0109 ------SI233TP Ciclev10032461mscaffold_419701291972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseRP-0751.394
Bf0110 ------SI297TP Ciclev10014639mscaffold_23523551735237892J C_unshiu_00048:mRNA_48.1C_unshiu_000483064123086209-cis-epoxycarotenoid dioxygenase 1
Bf0112 ------TP Ciclev10011997mscaffold_61048506410488724
Bf0113 ------TP Ciclev10031989mscaffold_41267867112681681
Bf0115 O-----SI054,SI295TP Ciclev10029066mscaffold_863172056322458J C_unshiu_00484:mRNA_11.3C_unshiu_004844821654250Squalene synthaseAGI-0858.587NAT-08117.717
Bf0116 ------SI260TP Ciclev10015490mscaffold_276627537667440J C_unshiu_00729:mRNA_11.1C_unshiu_007298141586474Aminotransferase 2AGI-06133.800RP-06.128.601
Bf0117 ------TP Ciclev10013983mscaffold_124904223
Bf0118 ------TP Ciclev10021811mscaffold_34386958343874373
Bf0119 O-----TP Ciclev10005276mscaffold_91074434110746393
Bf0120 ------TP Ciclev10001047mscaffold_52693535726947618
Bf0121 ------TP Ciclev10020263mscaffold_33811119138116265
Bf0122 ------TP Ciclev10016206mscaffold_22247120822474774
Bf0123 ------SI141TP Ciclev10011473mscaffold_61580386415809998J C_unshiu_00284:mRNA_13.1C_unshiu_00284114758120828Sulfoquinovosyldiacylglycerol 2AGI-0892.221RP-0410.226
Bf0124 ------TP Ciclev10014143mscaffold_23066012430670009
Bf0125 ------TP Ciclev10001956mscaffold_51576493715766976J C_unshiu_00293:mRNA_8.1C_unshiu_00293104196105925NAC transcription factorNAT-038.920RP-0331.431
Bf0127 ------TP Ciclev10003654mscaffold_52445642524462454
Bf0128 O-----TP Ciclev10025298mscaffold_733232693331038J C_unshiu_00051:mRNA_2.2C_unshiu_000512587240163Hypothetical proteinAGI-0270.082NAT-02S77.157RP-02.29.835
Bf0130 ------SI063,SI188TP Ciclev10004858mscaffold_92698149826984277J C_unshiu_00095:mRNA_24.1C_unshiu_00095228406230902F-box family protein isoform 1AGI-0340.452
Bf0136 AAvailable marker O----O
Bf0138 MDisagree by Marco analysis O-----TP Ciclev10019462mscaffold_360724606076187J C_unshiu_00428:mRNA_16.2C_unshiu_00428119232121021Oxygen-evolving enhancer protein 2, chloroplasticNAT-0514.555RP-0524.995
Bf0141 ------TP Ciclev10009364mscaffold_12289347622896534
Bf0142 O-----TP Ciclev10024891mscaffold_785088378516759J C_unshiu_00290:mRNA_16.1C_unshiu_00290151884158772Class III homeodomain leucine zipper proteinAGI-025.104
Bf0143 ------TP Ciclev10011434mscaffold_62510123725104868
Bf0145 O--O--SI272,SI327,SI368TP Ciclev10027909mscaffold_82273083922737522J C_unshiu_00158:mRNA_13.1C_unshiu_00158102548109253Pseudo-response regulator 37AGI-0820.703RP-085.775
Bf0146 O-----TP Ciclev10022345mscaffold_34852882048531316J C_unshiu_00026:mRNA_37.1C_unshiu_00026280361282836RRNA-processing protein FCF1AGI-0578.274
Bf0147 ------SI165TP Ciclev10014858mscaffold_259753675977280J C_unshiu_00260:mRNA_18.1C_unshiu_00260124629126502Flavonoid 3'-monooxygenaseRP-06.147.841
Bf0148 ------TP Ciclev10012535mscaffold_62013311820134805NoAGI-0462.325NAT-0412.575
Bf0150 ------SI316,SI370TP Ciclev10004834mscaffold_93101883631027361J C_unshiu_00003:mRNA_85.1C_unshiu_00003596288610960Aldehyde dehydrogenaseAGI-0377.920RP-0377.748
Bf0156 ------TP Ciclev10021991mscaffold_314701631473304
Bf0158 -O-O--SI376TP Ciclev10021285mscaffold_352532815254755J C_unshiu_00795:mRNA_3.1C_unshiu_007952253423534Ethylene responsive element binding factor, putativeAGI-0529.035NAT-0521.258RP-0520.825
Bf0159 ------SI074TP Ciclev10016059mscaffold_21350226813505597J C_unshiu_01990:mRNA_1.1C_unshiu_019901047113748DCD (Development and cell death) domain proteinRP-06.123.326
Bf0160 ------TP Ciclev10016613mscaffold_23059933530602528
Bf0161 ------SI089,SI348TP Ciclev10015189mscaffold_266580036660691J C_unshiu_00072:mRNA_47.1C_unshiu_00072364436365812Sequence-specific DNA binding transcription factorsAGI-06144.849
Bf0164 ULess informative for main cultivars O-----SI263TP Ciclev10000615mscaffold_54306044243066562J C_unshiu_00370:mRNA_39.2C_unshiu_00370217887223455Pyrophosphate-dependent phosphofructokinase alpha subunitAGI-0921.471NAT-09111.981RP-0994.065
Bf0165 ------SI280TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1AGI-0529.035NAT-0523.083RP-0519.690
Bf0167 ------TP Ciclev10014944mscaffold_22601158626016025
Bf0171 ------SI381TP Ciclev10006006mscaffold_941163564117315J C_unshiu_00101:mRNA_25.1C_unshiu_00101280469282533Early light-induced protein, chloroplasticAGI-0352.548
Bf0174 O-----SI282TP Ciclev10019861mscaffold_335515423555978J C_unshiu_00120:mRNA_17.1C_unshiu_00120130029134158Atp-dependent RNA helicaseAGI-0525.049
Bf0177 ------SI060TP Ciclev10022075mscaffold_381866898189902J C_unshiu_00154:mRNA_43.2C_unshiu_00154341574344576Phosphoserine phosphataseAGI-0544.047
Bf0179 ------TP Ciclev10028278mscaffold_893832809385123
Bf0180 ------TP Ciclev10028147mscaffold_82111280421117215
Bf0182 O-----TP Ciclev10009454mscaffold_11783133317834889J C_unshiu_00429:mRNA_12.1C_unshiu_0042990883942963-deoxy-D-manno-octulosonate cytidylyltransferaseAGI-0147.439
Bf0183 O-----SI308TP Ciclev10005208mscaffold_952544165256826J C_unshiu_01106:mRNA_9.1C_unshiu_011067727579234Hypothetical protein
Bf0184 O-----TP Ciclev10021248mscaffold_32489355124898675J C_unshiu_00286:mRNA_27.1C_unshiu_00286216376220366Cysteine protease ATG4BAGI-0541.306
Bf0189 ------J C_unshiu_00008:mRNA_66.1C_unshiu_00008372226374586FerritinRP-0415.774
Bf0193 O-----SI100,SI109TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1RP-06.214.065
Bf0195 ------SI369TP Ciclev10000780mscaffold_53106923731075092J C_unshiu_00422:mRNA_5.1C_unshiu_004223532240511Sodium/hydrogen exchanger 2AGI-0974.076
Bf0197 ------TP Ciclev10025476mscaffold_756543765658039
Bf0200 OOthers ------SI335TP Ciclev10014367mscaffold_22902243329030724J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Bf0201 ------TP Ciclev10015180mscaffold_22937056029376244
Bf0202 ------TP Ciclev10000607mscaffold_52410375324107361J C_unshiu_00011:mRNA_55.1C_unshiu_00011511309514460Protein ETHYLENE INSENSITIVE 3RP-0927.641
Bf0203 ------TP Ciclev10022162mscaffold_34241048242413511
Bf0204 ------SI326TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticRP-02.29.835
Bf0205 O-----SI236TP Ciclev10025925mscaffold_735419243543863J C_unshiu_00301:mRNA_11.1C_unshiu_003015557057462WRKY
Bf0207 ------TP Ciclev10014190mscaffold_22200578322011411
Bf0212 ------SI332TP Ciclev10016442mscaffold_292066869211152J C_unshiu_00004:mRNA_52.2C_unshiu_00004401860406444Carbonate dehydrataseAGI-06117.593
Bf0213 ------SI097TP Ciclev10000820mscaffold_53769388237699178J C_unshiu_00238:mRNA_2.1C_unshiu_002381447519398DnaJ domain proteinRP-0977.126
Bf0215 ------TP Ciclev10022088mscaffold_35079352050795340
Bf0216 ------TP Ciclev10031058mscaffold_41505892015066775
Bf0218 O-----SI232TP Ciclev10000452mscaffold_53603699036048487J C_unshiu_00406:mRNA_20.1C_unshiu_00406134274145322IsoamylaseAGI-0953.205KmG-0937.847RP-0970.349
Bf0219 ------TP Ciclev10029243mscaffold_82485146224854925
Bf0221 ------TP Ciclev10005970mscaffold_92419518024198282J C_unshiu_00132:mRNA_22.1C_unshiu_00132211597223530Hypothetical proteinAGI-0347.887RP-0337.193
Bf0224 ------TP Ciclev10012183mscaffold_62224492422252231
Bf0225 ------TP Ciclev10016071mscaffold_234603703462174
Bf0226 MDisagree by Marco analysis O-----TP Ciclev10008869mscaffold_12365478523658857J C_unshiu_00175:mRNA_30.1C_unshiu_00175321759325671SEC14 cytosolic factorAGI-0863.341
Bf0229 ------SI253TP Ciclev10004848mscaffold_91724221817245901J C_unshiu_00122:mRNA_16.1C_unshiu_00122118693122329Selenium binding proteinAGI-0346.274RP-0337.885
Bf0232 ------TP Ciclev10031191mscaffold_42186177421865635J C_unshiu_01346:mRNA_3.1C_unshiu_013461820622054T-complex protein 1 subunit deltaAGI-0767.250RP-076.705
Bf0233 MDisagree by Marco analysis O-----SI359TP Ciclev10019826mscaffold_365022316504139J C_unshiu_00521:mRNA_1.1C_unshiu_0052124494274Cytochrome P450 76C2AGI-0542.581RP-0527.235
Bf0401 ------TP Ciclev10019609mscaffold_33790609037910975
Bf0402 ------TP Ciclev10020232mscaffold_391372499144663J C_unshiu_00058:mRNA_19.1C_unshiu_00058104866110977TRNA-specific adenosine deaminase-like protein 3AGI-0543.970
Bf0403 ------
Bf0404 ------
Bf0405 ------TP Ciclev10024721mscaffold_729945253001770
Bf0406 ------TP Ciclev10026290mscaffold_71577309115776242
Bf0407 ------TP Ciclev10011592mscaffold_61072903410731466
Bf0408 ------TP Ciclev10024877mscaffold_748431574848614
Bf0409 ------J C_unshiu_00616:mRNA_6.1C_unshiu_006167217179153Disease resistance protein (CC-NBS-LRR class) family proteinAGI-0857.386
Bf0410 ------TP Ciclev10003680mscaffold_53291782632924241
Bf0411 MDisagree by Marco analysis ------TP Ciclev10028317mscaffold_82186906521874083J C_unshiu_00500:mRNA_13.1C_unshiu_00500128482133656Sulfotransferase
Bf0412 ------NoAGI-0829.534
Bf0413 ------J C_unshiu_00293:mRNA_16.1C_unshiu_00293231743233897Hypothetical proteinAGI-0986.996
Bf0414 ------TP Ciclev10014446mscaffold_277195507723396
Bf0415 ------J C_unshiu_00643:mRNA_7.1C_unshiu_00643115076117637BEL1-like homeodomain protein 1AGI-0846.736
Bf0416 ------TP Ciclev10020574mscaffold_32076297420770394
Bf0417 ------TP Ciclev10009842mscaffold_1693215695933
Bf0418 ------TP Ciclev10002049mscaffold_53848925738490776
Bf0419 ------TP Ciclev10012995mscaffold_686966948697639
Bf1176 ------TP Ciclev10033000mscaffold_42431210824313141
Bf1181 ------
Bf1182.2 ------NoAGI-0356.391
Bf1185 ------TP Ciclev10003304mscaffold_54099352040993992NoAGI-09
Bf1186 ------SI245TP Ciclev10012047mscaffold_62191243821917736J C_unshiu_00079:mRNA_40.1C_unshiu_00079278696283911R3H domain-containing protein 2
Bf1192 ------TP Ciclev10008160mscaffold_11067865310684627J C_unshiu_00242:mRNA_11.1C_unshiu_00242100038105603Casein kinase I-like proteinAGI-0157.863
Bf1198 ------
Bf1204 ------SI364TP Ciclev10013297mscaffold_61375067113752605J C_unshiu_00155:mRNA_3.1C_unshiu_001551760819347Hypothetical protein
Bf1207 ------TP Ciclev10010835mscaffold_12291269522913798J C_unshiu_00103:mRNA_59.1C_unshiu_00103319187320041Hypothetical proteinAGI-01
Bf1208 ------SI108No
Bf1243 ------TP Ciclev10032276mscaffold_42465701524660141J C_unshiu_00001:mRNA_262.1C_unshiu_0000116636301666687U3 small nucleolar ribonucleoprotein IMP4AGI-0784.114
Bf1253 ------
Cp0001 O-----TP Ciclev10021700mscaffold_34757641547578036
Cp0002 O-----TP Ciclev10020254mscaffold_34758333747586652
Cp0003 ------TP Ciclev10012377mscaffold_61182647211830875
Cp0004 O-----TP Ciclev10020892mscaffold_34875330748755805
Cp0006 O-----TP Ciclev10031874mscaffold_41461089714614381
Cp0007 ULess informative for main cultivars O-----TP Ciclev10022090mscaffold_34692469246927004
Cp0009 O-----TP Ciclev10018574mscaffold_34614324146147293
Cp0010 O-----TP Ciclev10020155mscaffold_34560480645609651
Cp0012 O-----TP Ciclev10022248mscaffold_34444284144444278
Cp0013 ------TP Ciclev10023436mscaffold_34483403544836704
Cp0015 ------TP Ciclev10016927mscaffold_21739038917391229
Cp0016 ------TP Ciclev10008520mscaffold_11811726418119451
Cp0018 ------TP Ciclev10005068mscaffold_956054705610840J C_unshiu_00057:mRNA_49.1C_unshiu_00057415460428173Putative E3 ubiquitin-protein ligase HERC1AGI-0344.848
Cp0021 O-----TP Ciclev10015229mscaffold_22230529722307562
Cp0026 ------TP Ciclev10014741mscaffold_22493868624943643J C_unshiu_00472:mRNA_8.1C_unshiu_004728527889618Putative ADP-glucose pyrophosphorylase small subunitAGI-0672.449
Cp0026bCp0026.2 O-----TP Ciclev10024128mscaffold_34335440443355588
Cp0028 O-----TP Ciclev10014471mscaffold_21141833111422116
Cp0030 O-----TP Ciclev10019700mscaffold_34381564743818118J C_unshiu_00869:mRNA_1.1C_unshiu_008691761664Phospholipase A1-Igamma1, chloroplasticAGI-0553.642
Cp0033 O-----TP Ciclev10031724mscaffold_42355654023559896
Cp0039 O-----TP Ciclev10032929mscaffold_415496791551396J C_unshiu_00012:mRNA_98.1C_unshiu_00012722822724539LOB domain-containing protein 12AGI-0711.882
Cp0042 O-----TP Ciclev10018175mscaffold_23340922233411202
Cp0045 ------TP Ciclev10008435mscaffold_151940855198860
Cp0046 ------TP Ciclev10014361mscaffold_274293107438670
Cp0047 HDisagree on Clementine haploid genotype ------TP Ciclev10021599mscaffold_34091814840922656J C_unshiu_00735:mRNA_16.1C_unshiu_00735120088124350Hypothetical proteinAGI-0548.590
Cp0050 O-----TP Ciclev10002804mscaffold_53231329932314734
Cp0051 O-----TP Ciclev10003175mscaffold_53332202933325343
Cp0052 OOthers O-----J C_unshiu_01597:mRNA_11.1C_unshiu_015972947142354Glucose-6-phosphate dehydrogenase 4AGI-0896.035
Cp0056 O-----TP Ciclev10000941mscaffold_53506534335070910
Cp0057 ------TP Ciclev10031335mscaffold_42422770324230754J C_unshiu_00001:mRNA_187.1C_unshiu_0000112443531247404DUF1336 family proteinAGI-0779.269
Cp0058 ------TP Ciclev10026609mscaffold_71853934718543298
Cp0059 O-----TP Ciclev10031015mscaffold_42307572823081009J C_unshiu_00001:mRNA_13.1C_unshiu_000018982896147Protein NLRC3AGI-0886.856
Cp0061 O-----TP Ciclev10031220mscaffold_42257731722582276
Cp0062 O-----TP Ciclev10032378mscaffold_41610719916109587J C_unshiu_01642:mRNA_2.1C_unshiu_016421631620085Ribose-phosphate diphosphokinaseAGI-0745.716
Cp0065 O-----TP Ciclev10002793mscaffold_584351238435971J C_unshiu_01044:mRNA_2.1C_unshiu_0104471177963FerredoxinAGI-0986.996
Cp0066 O-----TP Ciclev10027599mscaffold_758012085803835
Cp0067 O-----TP Ciclev10009235mscaffold_12005692620059223
Cp0070 O-----TP Ciclev10014440mscaffold_23542910335435228
Cp0071 ------TP Ciclev10014760mscaffold_23568153835687125
Cp0073 O-----TP Ciclev10020501mscaffold_359722885978062J C_unshiu_00997:mRNA_9.1C_unshiu_009976925775059TransaldolaseAGI-0534.924
Cp0076 O-----TP Ciclev10021577mscaffold_363291336332201J C_unshiu_01248:mRNA_3.1C_unshiu_012483903142057ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0535.411
Cp0077 O-----TP Ciclev10015497mscaffold_298491339852098J C_unshiu_00049:mRNA_29.1C_unshiu_00049210181212829Altered inheritance of mitochondria protein 32AGI-0854.867
Cp0080 O-----TP Ciclev10015476mscaffold_21159899911601307
Cp0083 O-----TP Ciclev10031889mscaffold_41962606119629792
Cp0085 O-----TP Ciclev10012552mscaffold_62336430323366061J C_unshiu_00098:mRNA_21.1C_unshiu_00098143026144827Allene oxide cyclaseAGI-0442.183
Cp0086 OOthers O-----TP Ciclev10032381mscaffold_42415485624157188
Cp0088 O-----TP Ciclev10031190mscaffold_42390818923912723
Cp0089 Bno homozygous cultivar with minor allele O-O---TP Ciclev10032543mscaffold_42385883023861090J C_unshiu_00001:mRNA_128.1C_unshiu_00001852968856494CAAX amino terminal protease family proteinAGI-0777.194
Cp0093 Bno homozygous cultivar with minor allele O-----TP Ciclev10032427mscaffold_42359643423599906J C_unshiu_00001:mRNA_89.1C_unshiu_00001587949598235Putative WRKY transcription factor 72AGI-0774.537
Cp0100 O-----TP Ciclev10024866mscaffold_71047113610474241J C_unshiu_00924:mRNA_4.1C_unshiu_009245026952902Tetratricopeptide repeat-like superfamily proteinAGI-0214.111
Cp0101 ------TP Ciclev10015680mscaffold_23534906335350706
Cp0103 ------TP Ciclev10029116mscaffold_81604553516047020
Cp0106 MDisagree by Marco analysis ------TP Ciclev10020606mscaffold_31186776511869679J C_unshiu_00741:mRNA_6.1C_unshiu_007414498955203Wall associated kinase-like 6, putativeAGI-0340.566
Cp0113 ------TP Ciclev10028057mscaffold_82502254825027972
Cp0114 ------TP Ciclev10027515mscaffold_71544626915449214J C_unshiu_01960:mRNA_1.1C_unshiu_0196014004642DS12 from 2D-PAGE of leaf protein, putativeAGI-0221.337
Cp0125 ------TP Ciclev10018700mscaffold_387186538721659
Cp0135 ------TP Ciclev10027108mscaffold_7923672926367
Cp0137 ------TP Ciclev10000712mscaffold_54213964242144610
Cp0149 ------TP Ciclev10000231mscaffold_53777034337775957
Cp0150 ------TP Ciclev10001657mscaffold_53762288737624944
Cp0151 ------TP Ciclev10001710mscaffold_53662764436631386
Cp0153 ------TP Ciclev10000835mscaffold_53619601336199839
Cp0160 ------TP Ciclev10019883mscaffold_32194055121944032J C_unshiu_00272:mRNA_20.1C_unshiu_00272187755191248EndoglucanaseAGI-0541.267
Cp0168 ------
Cp0185 ------TP Ciclev10002024mscaffold_53455836234564638J C_unshiu_00190:mRNA_33.1C_unshiu_00190230947237587Adenine phosphoribosyltransferaseAGI-0351.129
Cp0190 OOthers ------TP Ciclev10023646mscaffold_31864842618650443J C_unshiu_00618:mRNA_5.1C_unshiu_006182027322297UPF0426 protein, chloroplasticAGI-0627.617
Cp0207 ------TP Ciclev10015296mscaffold_23185169831857541
Cp0214 OOthers ------TP Ciclev10016075mscaffold_22973224929735969J C_unshiu_00073:mRNA_25.1C_unshiu_00073178507182191MOSC domain-containing protein 2, mitochondrialAGI-0646.660
Cp0221 ULess informative for main cultivars ------TP Ciclev10016539mscaffold_23064853130649856J C_unshiu_00125:mRNA_61.1C_unshiu_00125360098361069Photosystem I reaction center subunit III
Cp0224 ------
Cp0230 ------TP Ciclev10001047mscaffold_52693535726947618
Cp0233 ------TP Ciclev10031694mscaffold_41121087911216325J C_unshiu_00061:mRNA_64.1C_unshiu_00061550725556167Ribose-phosphate pyrophosphokinase 4AGI-0737.826
Cp0234 ------TP Ciclev10004626mscaffold_92987479829879735
Cp0237 ------TP Ciclev10033007mscaffold_41065238110655082J C_unshiu_00483:mRNA_11.1C_unshiu_00483100177109515Protein LSD1AGI-0735.506
Cp0239 ------TP Ciclev10032871mscaffold_41061500510617641
Cp0243 ------TP Ciclev10019694mscaffold_315826751586208
Cp0247 ------TP Ciclev10001611mscaffold_53924145839245153
Cp0249 ------TP Ciclev10001084mscaffold_53948064739484776J C_unshiu_00457:mRNA_14.1C_unshiu_004579654099356Acetyltransferase component of pyruvate dehydrogenase complexAGI-0941.336
Cp0257 ------TP Ciclev10001536mscaffold_53652607336528589J C_unshiu_00657:mRNA_4.1C_unshiu_006575219954744Trehalose-phosphataseAGI-0948.390
Cp0258 ------TP Ciclev10000007mscaffold_53666014136674263
Cp0266 ------TP Ciclev10001114mscaffold_54287580342879044
Cp0277 ------TP Ciclev10008086mscaffold_177769707783395
Cp0278 ------TP Ciclev10022561mscaffold_32475079424752907J C_unshiu_00286:mRNA_8.1C_unshiu_002867306881236Hypothetical proteinAGI-04122.142
Cp0280 ------TP Ciclev10020337mscaffold_31487842714882285
Cp0281 ------TP Ciclev10001600mscaffold_54062824440630241
Cp0294 ------TP Ciclev10001042mscaffold_53441446134417249
Cp0297 ------TP Ciclev10028989mscaffold_821354452138606J C_unshiu_00024:mRNA_26.2C_unshiu_00024197656201866ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0878.209
Cp0301 ------TP Ciclev10028366mscaffold_816044601606311
Cp0303 ------TP Ciclev10000422mscaffold_54254163742545268
Cp0313 ------TP Ciclev10025985mscaffold_71518295015186486
Cp0318 ------TP Ciclev10025825mscaffold_71620197116207283
Cp0319 ------TP Ciclev10021170mscaffold_31499357914994805
Cp0321 AAvailable marker -----OTP Ciclev10026722mscaffold_788986268899984J C_unshiu_00221:mRNA_33.1C_unshiu_00221211111214358Hypothetical protein
Cp0336 ------TP Ciclev10004655mscaffold_93124444031250356J C_unshiu_00003:mRNA_113.1C_unshiu_00003809668815079ABC transporter D family member 2, chloroplasticAGI-0379.515
Cp0345 ------TP Ciclev10002001mscaffold_53187438431876484
Cp0363 ------TP Ciclev10023762mscaffold_34651003946512543
Cp0381 ------TP Ciclev10015511mscaffold_23215529532158290
Cp0384 AAvailable marker O---OOTP Ciclev10015162mscaffold_23542259835425980J C_unshiu_00048:mRNA_23.2C_unshiu_00048111764114820APS reductaseAGI-0619.002
Cp0401 ------TP Ciclev10022489mscaffold_310561161057706
Cp0403 ------TP Ciclev10022161mscaffold_3749176751194
Cp0411 ------TP Ciclev10012081mscaffold_674897467495735
Cp0415 ------TP Ciclev10011681mscaffold_62221354422219300J C_unshiu_00074:mRNA_13.1C_unshiu_000748130186950ATA15 proteinAGI-0450.134
Cp0419 AAvailable marker -O--OOTP Ciclev10002215mscaffold_52881531428816638J C_unshiu_00758:mRNA_1.1C_unshiu_007587944329ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0988.739SA-0944.226
Cp0427 ------TP Ciclev10009075mscaffold_1738477743395
Cp0431 AAvailable marker O---OOTP Ciclev10015731mscaffold_22708417727089027J C_unshiu_00017:mRNA_35.1C_unshiu_00017248152252850E3 ubiquitin protein ligase RIE1AGI-0660.660
Cp0439 ------TP Ciclev10032902mscaffold_41946766919468803
Cp0450 OOthers ------TP Ciclev10001900mscaffold_53747817937482337
Cp0451 ------TP Ciclev10028586mscaffold_8232123235806
Cp0452 AAvailable marker ----OOTP Ciclev10030661mscaffold_42357539923582495J C_unshiu_00001:mRNA_85.1C_unshiu_00001566935573821Alpha-amylase-like 3 isoform 1AGI-0775.350
Cp0454 ------TP Ciclev10030551mscaffold_42320093623206254J C_unshiu_00001:mRNA_32.1C_unshiu_00001214996218740DEAD-box ATP-dependent RNA helicase ISE2, chloroplasticAGI-0773.034
Cp0457 ------TP Ciclev10030910mscaffold_42225318922257152
Cp0458 ------TP Ciclev10014634mscaffold_297445749752276
Cp0459 ------TP Ciclev10016822mscaffold_22754966027551146J C_unshiu_00017:mRNA_86.1C_unshiu_00017707192708314NADH dehydrogenase-like complex LAGI-0674.140
Cp0464 ------TP Ciclev10021386mscaffold_32075071220753437
Cp0468 ------TP Ciclev10001972mscaffold_53945945739464982
Cp0475 ------TP Ciclev10008029mscaffold_11151241511514434
Cp0481 ------TP Ciclev10030851mscaffold_469706246975096
Cp0500 ------TP Ciclev10022359mscaffold_322923992293655
Cp0506 AAvailable marker O---OOTP Ciclev10001978mscaffold_54083260340834625NoAGI-0938.656
Cp0510 ------TP Ciclev10002669mscaffold_54120882041211050
Cp0518 ------TP Ciclev10001692mscaffold_54229427042295612
Cp0519 ------TP Ciclev10002698mscaffold_54232613542327438
Cp0522 ------TP Ciclev10000761mscaffold_54301659843020200
Cp0530 ------TP Ciclev10001462mscaffold_53751704337521275
Cp0532 ------TP Ciclev10020319mscaffold_33039381130398972J C_unshiu_00501:mRNA_15.1C_unshiu_00501133280137847Solanesyl diphosphate synthaseAGI-0542.168
Cp0537 AAvailable marker O---OOTP Ciclev10016779mscaffold_23418921634193815J C_unshiu_00002:mRNA_71.2C_unshiu_00002543564547918Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10AGI-0625.930
Cp0540 ------TP Ciclev10020181mscaffold_31042731310435293J C_unshiu_02340:mRNA_1.1C_unshiu_0234020058306DNA repair protein reca, putativeAGI-0542.191
Cp0556 ------TP Ciclev10025170mscaffold_71048441310489121
Cp0564 ------TP Ciclev10015744mscaffold_22818935028194237
Cp0566 ------TP Ciclev10014450mscaffold_22873294128736344
Cp0571 ------TP Ciclev10004533mscaffold_91199328211999324
Cp0589 ------TP Ciclev10016280mscaffold_22389181423893095
Cp0591 ------TP Ciclev10017197mscaffold_22433680924337802
Cp0592 ------TP Ciclev10015082mscaffold_251678535171721
Cp0601 ------TP Ciclev10028382mscaffold_814245511429767
Cp0603 MDisagree by Marco analysis O-----TP Ciclev10028998mscaffold_823496552354496J C_unshiu_00363:mRNA_34.1C_unshiu_00363217631222409Hop-interacting protein THI043AGI-0875.684
Cp0605 ------TP Ciclev10029105mscaffold_826276832630058
Cp0632 AAvailable marker O---OOTP Ciclev10007941mscaffold_12769893427703620J C_unshiu_00237:mRNA_7.1C_unshiu_002374093045531Protein translocase subunit SecYAGI-0856.724
Cp0634 ------TP Ciclev10031740mscaffold_41566046315665838J C_unshiu_00824:mRNA_8.1C_unshiu_0082496745119992Hypothetical proteinAGI-0732.589
Cp0635 AAvailable marker O-O-OOJ C_unshiu_00337:mRNA_4.1C_unshiu_00337115961530750S ribosomal protein L4AGI-0617.029
Cp0646 ------TP Ciclev10020263mscaffold_33811119138116265
Cp0655 ------TP Ciclev10028195mscaffold_854964245502056
Cp0661 ------TP Ciclev10025609mscaffold_756683795673913
Cp0671 AAvailable marker ----OOTP Ciclev10009489mscaffold_12835394828356507J C_unshiu_00590:mRNA_26.1C_unshiu_00590165626168046UPF0133 proteinAGI-0136.113
Cp0672 ------TP Ciclev10007769mscaffold_12826220228267878J C_unshiu_00005:mRNA_26.1C_unshiu_00005170218174432Putative eukaryotic translation initiation factor 4 gammaAGI-01101.472
Cp0675 AAvailable marker O---OOTP Ciclev10030633mscaffold_42029424020301426J C_unshiu_00015:mRNA_33.1C_unshiu_00015302440309360DNA-directed RNA polymeraseAGI-0759.793
Cp0696 ------TP Ciclev10029354mscaffold_81806476118071003
Cp0699 ------TP Ciclev10009114mscaffold_145220224524821
Cp0701 ------TP Ciclev10015579mscaffold_285394108545538
Cp0703 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinAGI-0843.089
Cp0705 ------TP Ciclev10029127mscaffold_82007972020084101
Cp0709 ------TP Ciclev10028359mscaffold_82035223220354410
Cp0716 ------TP Ciclev10009855mscaffold_154351655436509
Cp0717 OOthers ------TP Ciclev10020167mscaffold_34580772945812484
Cp0719 ------TP Ciclev10028417mscaffold_82325704323262019J C_unshiu_02393:mRNA_2.1C_unshiu_023931863723537Inner membrane protein ALBINO3AGI-0812.793
Cp0739 ------TP Ciclev10029243mscaffold_82485146224854925
Cp0741 AAvailable marker O---OOTP Ciclev10008230mscaffold_137468643749903J C_unshiu_00055:mRNA_22.1C_unshiu_00055168281172005FerrochelataseAGI-0175.964
Cp0742 ------TP Ciclev10024455mscaffold_34380128143801864
Cp0745 ------TP Ciclev10014471mscaffold_21141833111422116
Cp0747 ------TP Ciclev10015418mscaffold_21108496011088767J C_unshiu_00184:mRNA_32.1C_unshiu_00184282295285277ATP synthase protein IAGI-0985.816
Cp0748 ------TP Ciclev10022288mscaffold_33467345134674900J C_unshiu_00669:mRNA_14.1C_unshiu_00669103814104779Light-dependent short hypocotyls proteinAGI-0133.562
Cp0758 ------TP Ciclev10015073mscaffold_22945263929459747
Cp0781 AAvailable marker ----OOTP Ciclev10021469mscaffold_34104366341046480J C_unshiu_00305:mRNA_28.1C_unshiu_00305251599254198Thioredoxin-like 7 family proteinAGI-0550.294
Cp0784 ------TP Ciclev10016057mscaffold_23356148733563802
Cp0787 ------TP Ciclev10011650mscaffold_61740287717405928
Cp0813 ------SI047TP Ciclev10011980mscaffold_62063804920641557J C_unshiu_00046:mRNA_46.1C_unshiu_00046406041409549Alpha/beta fold hydrolaseAGI-0458.655
Cp0815 ------TP Ciclev10012928mscaffold_62095632620958294
Cp0822 ------TP Ciclev10028025mscaffold_82247592222481806
Cp0825 ------TP Ciclev10013683mscaffold_61189882711905679
Cp0832 ------TP Ciclev10021626mscaffold_32093193920936268
Cp0835 ------TP Ciclev10019790mscaffold_386404208644420
Cp0839 ------TP Ciclev10011239mscaffold_61570355915706187
Cp0844 ------TP Ciclev10012026mscaffold_61642954316431668
Cp0848 ------TP Ciclev10012679mscaffold_61700290417003946
Cp0849 ------SI355TP Ciclev10012425mscaffold_61765146617653457J C_unshiu_00090:mRNA_56.2C_unshiu_00090364770367591Non-green plastid inner envelope membrane protein
Cp0861 ------TP Ciclev10032618mscaffold_463351386336149
Cp0870 Bno homozygous cultivar with minor allele ------SI338TP Ciclev10031974mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-075.180
Cp0895 AAvailable marker ----OOTP Ciclev10011406mscaffold_61924170019246874J C_unshiu_00089:mRNA_3.1C_unshiu_00089994514749ATP-dependent RNA helicaseAGI-0467.375
Cp0900 ------TP Ciclev10017707mscaffold_21138191711385787
Cp0912 ------TP Ciclev10001835mscaffold_53065573130659789
Cp0920 ------TP Ciclev10020914mscaffold_32545206225455844
Cp0921 OOthers ------TP Ciclev10022149mscaffold_32544885825451858
Cp0933 OOthers ------TP Ciclev10019734mscaffold_34982190649825730J C_unshiu_00014:mRNA_26.1C_unshiu_00014159299162719Hypothetical proteinAGI-0347.283
Cp0934 ------TP Ciclev10001707mscaffold_53429485334297047
Cp0955 ------TP Ciclev10011439mscaffold_62510123725104868
Cp0962 ------TP Ciclev10016442mscaffold_292066869211152
Cp0965 ------TP Ciclev10020405mscaffold_332012063204377
Cp0973 OOthers ------TP Ciclev10013409mscaffold_681933938195764J C_unshiu_00407:mRNA_4.1C_unshiu_004075542557717Thioredoxin F-type, chloroplastic
Cp0974 ------TP Ciclev10011578mscaffold_680294888035109J C_unshiu_00711:mRNA_6.1C_unshiu_00711128510138133Hypothetical proteinAGI-04107.018
Cp0975 MDisagree by Marco analysis ------TP Ciclev10012312mscaffold_679241897928192J C_unshiu_00631:mRNA_15.1C_unshiu_00631149702153660Isopentenyl pyrophosphate isomeraseAGI-0729.152
Cp0980 ------TP Ciclev10024548mscaffold_34130777641309278
Cp0996 Bno homozygous cultivar with minor allele ------SI340TP Ciclev10004474mscaffold_9543444546746J C_unshiu_00007:mRNA_105.1C_unshiu_00007630727633783Neutral/alkaline invertaseAGI-039.366
Cp1008 ------TP Ciclev10031135mscaffold_41651904616521918
Cp1010 ------
Cp1011 ------TP Ciclev10016354mscaffold_22534643925350875J C_unshiu_00087:mRNA_55.1C_unshiu_00087398683402763ZZ-type zinc finger-containing 3AGI-09115.692
Cp1031 AAvailable marker -O--OOTP Ciclev10005224mscaffold_923243132328666J C_unshiu_00394:mRNA_4.1C_unshiu_003941197016480Putative E3 ubiquitin-protein ligase MARCH10AGI-0318.610
Cp1034 AtAvailable marker ----OOTP Ciclev10005575mscaffold_92110789421109983J C_unshiu_00160:mRNA_22.1C_unshiu_00160182942184946Putative calcium-binding protein CML48AGI-0346.760
Cp1044 Bno homozygous cultivar with minor allele ------TP Ciclev10015927mscaffold_243542784358516J C_unshiu_00062:mRNA_38.1C_unshiu_00062326045332995Iron-sulfur cluster formation ABC transporter ATP-binding subunitAGI-0739.420
Cp1050 ------TP Ciclev10032471mscaffold_415378351540818
Cp1056 ------TP Ciclev10012459mscaffold_62002437020027538
Cp1067 ------TP Ciclev10014572mscaffold_2188504192741
Cp1081 ------TP Ciclev10024992mscaffold_778266037829404
Cp1084 OOthers ------J C_unshiu_01090:mRNA_3.1C_unshiu_010902308426817Sesquiterpene synthaseAGI-0844.577
Cp1085 ------TP Ciclev10025935mscaffold_723900102391658J C_unshiu_00025:mRNA_42.1C_unshiu_00025337060338142Putative geranylgeranyl pyrophosphate synthase 3-likeAGI-0270.082
Cp1086 ------TP Ciclev10025935mscaffold_723900102391658
Cp1093 ------TP Ciclev10009636mscaffold_11669697916699623
Cp1111 MDisagree by Marco analysis ------TP Ciclev10024860mscaffold_786034508610239J C_unshiu_00290:mRNA_28.1C_unshiu_00290241335248051Cell division protein ftsH, putative isoform 1AGI-025.054
Cp1113 ------TP Ciclev10004638mscaffold_9987368992630
Cp1114 ------TP Ciclev10004644mscaffold_9870926875408
Cp1115 ------TP Ciclev10005600mscaffold_9729077730936
Cp1143 MDisagree by Marco analysis O-----TP Ciclev10000651mscaffold_53985853139862402J C_unshiu_00096:mRNA_9.1C_unshiu_000967071373505Phosphoglycerate dehydrogenaseAGI-0942.158
Cp1144 OOthers ------TP Ciclev10028086mscaffold_826499912655756J C_unshiu_00152:mRNA_43.1C_unshiu_00152288550294174Sodium:hydrogen antiporter 1 isoform 1AGI-0870.995
Cp1162 AAvailable marker ----OOTP Ciclev10001345mscaffold_53590818135912917J C_unshiu_00255:mRNA_35.1C_unshiu_00255260170264872Phosphoribosylaminoimidazolesuccinocarboxamide synthaseAGI-0953.232RP-0969.673
Cp1163 ------TP Ciclev10025825mscaffold_71620197116207283
Cp1177 ------TP Ciclev10006006mscaffold_941163564117315
Cp1184 ------TP Ciclev10005685mscaffold_91780995717817998
Cp1196 ------TP Ciclev10031889mscaffold_41962606119629792
Cp1200 MDisagree by Marco analysis O-----J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0838.604
Cp1201 ------TP Ciclev10031397mscaffold_41941684419420948
Cp1213 ------TP Ciclev10015476mscaffold_21159899911601307
Cp1216 AAvailable marker ----OOTP Ciclev10017113mscaffold_21211279012113903J C_unshiu_00026:mRNA_6.1C_unshiu_000264665847677CCR proteinAGI-0676.905
Cp1221 ------TP Ciclev10016867mscaffold_21362765613629444
Cp1223 ------TP Ciclev10019033mscaffold_35055920550563745
Cp1224 ------TP Ciclev10016280mscaffold_22389181423893095
Cp1225 ------TP Ciclev10025660mscaffold_71720807517211871
Cp1252 ------TP Ciclev10000164mscaffold_53061774630629437
Cp1254 ------TP Ciclev10028147mscaffold_82111280421117215
Cp1257 ------TP Ciclev10014209mscaffold_255829275587253
Cp1267 MDisagree by Marco analysis ------TP Ciclev10011346mscaffold_679837887991526J C_unshiu_02325:mRNA_1.1C_unshiu_0232516429359Riboflavin biosynthesis protein RibDAGI-0894.382
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Cp1278 ------TP Ciclev10030907mscaffold_41226375512266130
Cp1279 AAvailable marker ----OOTP Ciclev10031414mscaffold_41290077712903692J C_unshiu_00461:mRNA_17.1C_unshiu_00461144878147555Ornithine aminotransferaseAGI-0740.184
Cp1283 ------TP Ciclev10001817mscaffold_53489110034894176
Cp1292 ------TP Ciclev10025390mscaffold_722467322249558
Cp1302 ------TP Ciclev10031853mscaffold_474078347414015
Cp1308 AAvailable marker -O--OOTP Ciclev10011420mscaffold_663294216335005J C_unshiu_00147:mRNA_29.1C_unshiu_00147247701253232Unspecific monooxygenaseAGI-04101.201
Cp1323 ------TP Ciclev10012716mscaffold_61799256317993671
Cp1330 ------TP Ciclev10019667mscaffold_31489816814903449
Cp1334 MDisagree by Marco analysis ------J C_unshiu_01048:mRNA_12.1C_unshiu_010488738690179Phosphoribosylformylglycinamidine cyclo-ligaseAGI-0346.968
Cp1336 ------TP Ciclev10032697mscaffold_433359453338632
Cp1340 ------TP Ciclev10032342mscaffold_4125954131376
Cp1352 ------TP Ciclev10032297mscaffold_481987878204052
Cp1361 AAvailable marker ----OOTP Ciclev10013042mscaffold_62171471621717652J C_unshiu_01167:mRNA_14.1C_unshiu_01167790368180850S ribosomal 5 alpha, chloroplasticAGI-0452.740
Cp1362 ------TP Ciclev10011842mscaffold_62159842921600967
Cp1366 AAvailable marker -----O
Cp1369 ------TP Ciclev10031159mscaffold_42473705024741836
Cp1405 ------TP Ciclev10021000mscaffold_320024272008126
Cp1407 ------TP Ciclev10031886mscaffold_42124308521244983
Cp1412 ------TP Ciclev10021694mscaffold_34721742847221472
Cp1427 AAvailable marker ----OOTP Ciclev10021746mscaffold_34557686345579197J C_unshiu_00326:mRNA_5.1C_unshiu_003262307325265Bifunctional protein FolDAGI-0558.917
Cp1428 ------TP Ciclev10020642mscaffold_34919556949198341
Cp1436 ------TP Ciclev10021696mscaffold_34872083748722931
Cp1439 ------TP Ciclev10019587mscaffold_34713975647144124
Cp1441 ------TP Ciclev10000384mscaffold_53773587337744747
Cp1474 ------TP Ciclev10001462mscaffold_53751704337521275
Cp1477 ------TP Ciclev10001770mscaffold_53609584436099890J C_unshiu_01173:mRNA_9.1C_unshiu_011736297766775Thylakoid lumenal 29 kDa protein, chloroplasticAGI-0954.123
Cp1483 ------TP Ciclev10020574mscaffold_32076297420770394J C_unshiu_00692:mRNA_14.1C_unshiu_00692122321129331Abhydrolase domain-containing protein 11AGI-0541.162
Cp1487 ------TP Ciclev10020878mscaffold_3541575543121
Cp1488Cp1488.1 ------TP Ciclev10021651mscaffold_366029946605239
Cp1488.2 ------TP Ciclev10021651mscaffold_366029946605239
Cp1489 ------TP Ciclev10021127mscaffold_365773606582553
Cp1490 ------TP Ciclev10021970mscaffold_363693986372018
Cp1500 ------TP Ciclev10004776mscaffold_970802497086989J C_unshiu_00161:mRNA_19.1C_unshiu_001611505191572063-isopropylmalate dehydratase large subunitAGI-0346.274
Cp1501 ------TP Ciclev10017197mscaffold_22433680924337802
Cp1523 AAvailable marker ----OOTP Ciclev10005519mscaffold_913567581359310J C_unshiu_01431:mRNA_7.1C_unshiu_014313151837086Hypothetical proteinAGI-0312.606
Cp1529 ------TP Ciclev10021432mscaffold_348409474846859
Cp1533 ------TP Ciclev10021868mscaffold_348317514834270J C_unshiu_00768:mRNA_14.1C_unshiu_00768110682113065Lil3 proteinAGI-0529.039
Cp1556 Bno homozygous cultivar with minor allele ------TP Ciclev10018756mscaffold_32143249421440948J C_unshiu_00175:mRNA_9.1C_unshiu_001759133899600Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplasticAGI-0540.337
Cp1567 ------TP Ciclev10014857mscaffold_23114884931150616
Cp1572 ------TP Ciclev10014734mscaffold_23319888033205481
Cp1577 ------TP Ciclev10015546mscaffold_23573248635736448
Cp1584 AAvailable marker -----OTP Ciclev10031523mscaffold_4201556204527J C_unshiu_00168:mRNA_36.1C_unshiu_00168285304287905Cell division cycle 20.1, cofactor of APC complex
Cp1585 MDisagree by Marco analysis ------TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green protein
Cp1586 ------TP Ciclev10019696mscaffold_318811561887598
Cp1592 ------TP Ciclev10002032mscaffold_54160958441613450
Cp1596 ------TP Ciclev10000953mscaffold_53575716235762784
Cp1598 AAvailable marker ----OOTP Ciclev10021001mscaffold_338023873805494J C_unshiu_00849:mRNA_13.2C_unshiu_00849729357582431 kDa ribonucleoproteinAGI-0512.715
Cp1607 ------TP Ciclev10005637mscaffold_92586066525863110
Cp1612 ------TP Ciclev10005481mscaffold_92948865829491181
Cp1614 ------TP Ciclev10008763mscaffold_12387679123880665
Cp1617 ------TP Ciclev10015460mscaffold_22243668522438478
Cp1624 AAvailable marker -O-OOOSI307TP Ciclev10008537mscaffold_11806829718070262J C_unshiu_00187:mRNA_17.1C_unshiu_0018799220100762CBS domain-containing protein CBSX5AGI-0158.420KmG-0153.054
Cp1627 AAvailable marker ----OOTP Ciclev10022024mscaffold_31330939813310636J C_unshiu_00431:mRNA_6.1C_unshiu_004314450745451Chloroplast small heat shock proteinAGI-0541.272
Cp1628 ------TP Ciclev10021963mscaffold_31282291112825620J C_unshiu_02666:mRNA_2.1C_unshiu_026661010412687Rhodanese/cell cycle control phosphatase superfamily proteinAGI-0541.272
Cp1629 ------TP Ciclev10016703mscaffold_22978314829785224
Cp1644 ------TP Ciclev10008029mscaffold_11151241511514434
Cp1666 ------TP Ciclev10008009mscaffold_111491501151996
Cp1670 ------TP Ciclev10009435mscaffold_117091311710064
Cp1671 ------TP Ciclev10025512mscaffold_748825204888243
Cp1675 ------TP Ciclev10002150mscaffold_54022635240230560
Cp1688 ------TP Ciclev10026380mscaffold_734561053460607
Cp1694 ------TP Ciclev10028384mscaffold_842921804295696
Cp1697 AAvailable marker ----OOTP Ciclev10028645mscaffold_8966124968846J C_unshiu_00041:mRNA_89.1C_unshiu_00041555334558046Urease accessory protein UreHAGI-0273.770
Cp1701 ------TP Ciclev10025659mscaffold_7303829305426
Cp1709 AAvailable marker -----OTP Ciclev10025382mscaffold_714507481452915J C_unshiu_00624:mRNA_14.1C_unshiu_00624137579139378Cytochrome P450 84A1
Cp1715 ------TP Ciclev10025487mscaffold_727135102717859
Cp1716 AAvailable marker ----OOTP Ciclev10026303mscaffold_726076702609433J C_unshiu_00025:mRNA_77.1C_unshiu_00025553145554831Thiol disulfide interchange proteinAGI-0270.068
Cp1719 ------TP Ciclev10025341mscaffold_739402743943841
Cp1723 ------TP Ciclev10025728mscaffold_750354295038431
Cp1736 ------TP Ciclev10026179mscaffold_756400585643125J C_unshiu_00761:mRNA_15.2C_unshiu_007618999192755Protein CbbYAGI-0250.716
Cp1738 AAvailable marker -----OSI237,SI296TP Ciclev10025941mscaffold_753884585389981J C_unshiu_00303:mRNA_12.1C_unshiu_00303100918102276Putative clathrin assembly protein
Cp1741 ------TP Ciclev10011473mscaffold_61580386415809998
Cp1745 ------TP Ciclev10011480mscaffold_61690366816906771
Cp1771 ------TP Ciclev10011285mscaffold_62040451620411982
Cp1772 OOthers ------TP Ciclev10004137mscaffold_92000976920033079
Cp1779 ------TP Ciclev10014382mscaffold_269270816932080
Cp1791 Bno homozygous cultivar with minor allele ------TP Ciclev10027428mscaffold_71160446411607028J C_unshiu_00582:mRNA_4.1C_unshiu_005821006711470NBS-LRR type disease resistance proteinAGI-0212.969
Cp1796 ------TP Ciclev10031010mscaffold_410588251062698
Cp1798 AAvailable marker ----OOTP Ciclev10012134mscaffold_62031967720323198J C_unshiu_00215:mRNA_34.1C_unshiu_00215205164208490Orange 2AGI-0460.291
Cp1815 OOthers ------TP Ciclev10022373mscaffold_382563988257886J C_unshiu_00154:mRNA_28.1C_unshiu_00154274299275412Wiskott-Aldrich syndrome protein family member 2AGI-0551.501
Cp1817 ------TP Ciclev10018833mscaffold_371636977167661
Cp1819 ------TP Ciclev10000418mscaffold_572883217296238
Cp1851 ------TP Ciclev10014769mscaffold_268407436844063
Cp1852 ------TP Ciclev10010530mscaffold_12271166822715696J C_unshiu_00103:mRNA_19.2C_unshiu_00103116559121057Cell differentiation protein rcd1AGI-029.592
Cp1854 ------TP Ciclev10032474mscaffold_42091750920920961
Cp1875 ------TP Ciclev10014955mscaffold_21414839214153974
Cp1880 AAvailable marker -----OTP Ciclev10016235mscaffold_293516309354621J C_unshiu_00067:mRNA_9.1C_unshiu_000677125274672Peptide deformylase
Cp1885 AAvailable marker -----OTP Ciclev10014471mscaffold_21141833111422116J C_unshiu_01218:mRNA_4.1C_unshiu_012181408422447ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Cp1887 MDisagree by Marco analysis ------TP Ciclev10010991mscaffold_62519361725201413J C_unshiu_00009:mRNA_34.1C_unshiu_00009183041190334ATP-dependent chaperone ClpB
Cp1903 ------TP Ciclev10021934mscaffold_34023138340235237
Cp1907 ------TP Ciclev10032825mscaffold_41776359617766370
Cp1908 ------TP Ciclev10031956mscaffold_41749913017500420
Cp1912 ------TP Ciclev10020299mscaffold_332418623247042
Cp1923 OOthers ------TP Ciclev10005293mscaffold_929463012950297J C_unshiu_00097:mRNA_22.1C_unshiu_00097195825199499UPF0613 protein PB24D3.06cAGI-0322.454
Cp1924 ------TP Ciclev10005766mscaffold_931126793115796
Cp1925 AAvailable marker ----OOTP Ciclev10005182mscaffold_931159713120271J C_unshiu_00051:mRNA_29.1C_unshiu_00051224928229203YjeF family domain-containing proteinAGI-0324.457
Cp1931 ------TP Ciclev10008910mscaffold_153536945358135
Cp1935 ------TP Ciclev10007732mscaffold_155188215522727
Cp1938 ------TP Ciclev10009324mscaffold_1329071331103
Cp1941 ------TP Ciclev10007519mscaffold_12579869025801889
Cp1945 ------TP Ciclev10014186mscaffold_284582098466681
Cp1951 ------TP Ciclev10004474mscaffold_9543444546746
Cp1958 ------TP Ciclev10021818mscaffold_389104548913829
Cp1977 OOthers ------TP Ciclev10004968mscaffold_91817485818179752
Cp1986 ------TP Ciclev10002475mscaffold_54232995142331110
Cp1988 ------TP Ciclev10000728mscaffold_53189566531900513
Cp1989 ------TP Ciclev10002271mscaffold_53187703031880023
Cp1991 ------TP Ciclev10013023mscaffold_61308231313084012
Cp1996 MDisagree by Marco analysis ------TP Ciclev10002770mscaffold_52946360429466318J C_unshiu_01370:mRNA_6.1C_unshiu_013704657449106Sec-independent protein translocase protein TatAAGI-0986.532RP-0933.820
Cp1998 AAvailable marker -----OTP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue protein
Cp2013 ------TP Ciclev10003676mscaffold_54043140540438162
Cp2026 AAvailable marker ----OOTP Ciclev10011534mscaffold_62350649123509585J C_unshiu_00098:mRNA_44.1C_unshiu_00098286004289150Tryptophan synthase, beta subunitAGI-0443.239
Cp2043 ------TP Ciclev10016825mscaffold_21344181313443080
Cp2046 ------TP Ciclev10023047mscaffold_314653011468225
Cp2048 ------TP Ciclev10024054mscaffold_3807021808331
Cp2052 ------TP Ciclev10000825mscaffold_54061769140619818
Cp2060 ------TP Ciclev10005381mscaffold_945037394508011
Cp2073 ------TP Ciclev10008749mscaffold_12687250026875269
Cp2079 ------TP Ciclev10015139mscaffold_23499344234996954
Cp2088 ------TP Ciclev10021333mscaffold_31924478319251332
Cp2092 ------TP Ciclev10014794mscaffold_22385901623862998
Cp2112 ------TP Ciclev10019054mscaffold_339154553918620
Cp2117 ------TP Ciclev10030756mscaffold_41451078714515793
Cp2118 ------TP Ciclev10032406mscaffold_41456545614568265J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0737.152
Cp2145 ------TP Ciclev10021983mscaffold_31241333712415802
Cp2147 ------TP Ciclev10019578mscaffold_31294548112949086
Cp2151 ------TP Ciclev10016218mscaffold_21991857419923588
Cp2154 ------SI164TP Ciclev10009584mscaffold_12046286020465557J C_unshiu_00670:mRNA_8.1C_unshiu_00670445024712150S ribosomal protein L24, chloroplastic
Cp2158 MDisagree by Marco analysis ------TP Ciclev10007944mscaffold_12284739722852110J C_unshiu_00103:mRNA_47.1C_unshiu_00103254015258614Trigger factor type chaperone family proteinAGI-0124.422
Cp2176 ------TP Ciclev10008323mscaffold_12764063627648110
Cp2180 ------TP Ciclev10008335mscaffold_12838566028388620
Cp2188 AAvailable marker ----OOTP Ciclev10028997mscaffold_82466672924669708J C_unshiu_00021:mRNA_116.1C_unshiu_00021778469782836Phytol kinaseAGI-082.186
Cp2190 Bno homozygous cultivar with minor allele ------TP Ciclev10028681mscaffold_82441658224418982J C_unshiu_00021:mRNA_82.1C_unshiu_00021526890529253Kinase PfkBAGI-0813.780
Cp2193 ------TP Ciclev10009415mscaffold_12299942423001838
Cp2194 ------TP Ciclev10028458mscaffold_82376805223771625
Cp2198 ------TP Ciclev10029160mscaffold_82315829223161424
Cp2208 AAvailable marker -----OTP Ciclev10021564mscaffold_374201767425027J C_unshiu_00995:mRNA_4.1C_unshiu_009953903143144D-ribulose-5-phosphate-3-epimerase isoform 1
Cp2210 AAvailable marker -----OTP Ciclev10007886mscaffold_181252798130885J C_unshiu_00744:mRNA_3.1C_unshiu_0074419836253206-phosphofructokinase isoform 1
Cp2223 OOthers ------TP Ciclev10022371mscaffold_334833343485637J C_unshiu_00933:mRNA_9.1C_unshiu_009338695889273Protein LATERAL ORGAN BOUNDARIESAGI-0525.049
Cp2229 AAvailable marker ----OOTP Ciclev10022058mscaffold_341174854120274J C_unshiu_00318:mRNA_6.1C_unshiu_003184437647085Nucleoside diphosphate kinaseAGI-0527.135
Cp2232 AAvailable marker ----OOTP Ciclev10002687mscaffold_51780952317810742J C_unshiu_01815:mRNA_5.1C_unshiu_018152859329777Photosystem I reaction center subunit NAGI-0222.436
Cp2237 AAvailable marker ----OOTP Ciclev10028314mscaffold_81319004113194829J C_unshiu_01736:mRNA_2.1C_unshiu_017361898623543Riboflavin biosynthesis protein ribBA, chloroplasticAGI-0855.965
Cp2247 ------TP Ciclev10026623mscaffold_72092263120924709
Cp2261 ------TP Ciclev10025819mscaffold_718056761808859
Cp2262 AAvailable marker -----OTP Ciclev10026121mscaffold_718709331874304J C_unshiu_00289:mRNA_20.1C_unshiu_00289113542116894Galactose mutarotase-like superfamily protein
Cp2263 AAvailable marker ----OOTP Ciclev10026034mscaffold_725863842588513J C_unshiu_00025:mRNA_69.1C_unshiu_00025530588532071Hypothetical proteinAGI-0270.082
Cp2266 ------
Cte994 ------TP Ciclev10000084mscaffold_53379119433800828
Cte995 ------
Cte996 ------TP Ciclev10033219mscaffold_41402270814024239
Cte997 ------
Cte998 ------TP Ciclev10020767mscaffold_31607861916080683
Cte999 ------TP Ciclev10024858mscaffold_71102771211030551
Edb001 ------TP Ciclev10021059mscaffold_34605471046056408
Edb002 ------TP Ciclev10032572mscaffold_42053347420543182
Edb003 OOthers ------TP Ciclev10032012mscaffold_41604632216048971J C_unshiu_01260:mRNA_4.1C_unshiu_012603013632342Putative WRKY transcription factor 28AGI-0741.830
Edb004 ------TP Ciclev10012152mscaffold_62487484024876388
Edb005 ------TP Ciclev10021157mscaffold_31014090410142752
Edb006 ------TP Ciclev10002733mscaffold_53997411339975525
Edp001 ------TP Ciclev10026603mscaffold_771473197149017
Edp002 ------TP Ciclev10022479mscaffold_384864918488997
Edp003 ------TP Ciclev10020967mscaffold_371977127199779
Edp004 ------TP Ciclev10013382mscaffold_61904654419048141
Edp005 HDisagree on Clementine haploid genotype ------TP Ciclev10000211mscaffold_52120399421212595J C_unshiu_00020:mRNA_80.1C_unshiu_00020742433758888Retinoblastoma protein 2AGI-09105.195RP-0923.442
Edw001 AAvailable marker -----OTP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609Shatterproof
Edw002 ------TP Ciclev10029316mscaffold_820123292014782J C_unshiu_00024:mRNA_48.2C_unshiu_00024335678337129LIM transcription factorAGI-0877.720
Edw003 ------TP Ciclev10019339mscaffold_34806348348066386
Edw004 ------TP Ciclev10021285mscaffold_352532815254755
Edw005 ------TP Ciclev10002005mscaffold_54306809343070554
Em0001 ------TP Ciclev10016968mscaffold_23192734231929229J C_unshiu_00027:mRNA_54.1C_unshiu_0002734506734672750S ribosomal protein L14, chloroplasticAGI-0635.643
Em0002 ------
Em0003 ------TP Ciclev10011201mscaffold_61984088119844299J C_unshiu_00043:mRNA_48.1C_unshiu_00043360776363775BEL1-like homeodomain protein 1AGI-0856.724
Em0004Fb1532.em ------TP Ciclev10015815mscaffold_21158569911587422J C_unshiu_01211:mRNA_9.1C_unshiu_012116775669149Transparent testa glabra 1AGI-0211.835
Em0005Fb1892.em ------J C_unshiu_00168:mRNA_8.1C_unshiu_001687638680254BEL1-like homeodomain protein 9AGI-07
Em0006Fb1092.em ------TP Ciclev10018447mscaffold_34744746947458060
Fb0101 ------
Fb0103 OOthers O-----SI155TP Ciclev10008255mscaffold_12275871222761740J C_unshiu_00103:mRNA_27.1C_unshiu_00103160138163082GDP-L-galactose phosphorylaseAGI-0130.703JtR-01S6.418
Fb0104 OOthers O-----TP Ciclev10016358mscaffold_23575854635760859J C_unshiu_00337:mRNA_24.1C_unshiu_00337135198136991Tropinone reductase likeAGI-0616.857RP-06.216.271
Fb0110 O-----SI246TP Ciclev10000900mscaffold_585123808517835J C_unshiu_00033:mRNA_4.1C_unshiu_000333775543368Bifunctional protein thiEDAGI-0985.810KmG-0923.401JtR-09S5.362
Fb0124 ------SI167,SI212TP Ciclev10014164mscaffold_21108880811095416J C_unshiu_00184:mRNA_31.1C_unshiu_00184275231281575Phosphoenolpyruvate carboxylase
Fb0130 ------TP Ciclev10021969mscaffold_3894965897547
Fb0133 ------J C_unshiu_00195:mRNA_19.1C_unshiu_00195140861146843Hypothetical proteinAGI-0239.589KmG-021.175JtR-021.082
Fb0138 ------TP Ciclev10000092mscaffold_53849902438504883J C_unshiu_00183:mRNA_7.1C_unshiu_001838654094072Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domainAGI-0943.862KmG-0954.172SA-0950.659
Fb0143 ------SI361TP Ciclev10007397mscaffold_12528380725291472J C_unshiu_00150:mRNA_43.1C_unshiu_00150325164333089LRR receptor-like serine/threonine-protein kinase ERL1AGI-0126.176RP-0164.368
Fb0144 AAvailable marker ----OOSI191TP Ciclev10019665mscaffold_35086181350866146J C_unshiu_00206:mRNA_42.1C_unshiu_00206283219294491Hypothetical proteinAGI-05107.806
Fb0146 ------TP Ciclev10005519mscaffold_913567581359310
Fb0149 ------TP Ciclev10005274mscaffold_91743696917441987
Fb0153 ------TP Ciclev10002324mscaffold_53634798636350649J C_unshiu_02857:mRNA_2.1C_unshiu_028571199414648Melanoma-associated antigen G1AGI-0951.925RP-0971.621
Fb0159 AAvailable marker O---OOSI227TP Ciclev10028241mscaffold_82345663023459052J C_unshiu_00375:mRNA_4.1C_unshiu_003752795230443O-Glycosyl hydrolases family 17 proteinAGI-0813.499KmG-089.978RP-082.327
Fb0180 ------SI209TP Ciclev10005370mscaffold_92773448227736035J C_unshiu_00252:mRNA_1.1C_unshiu_002521210913626Hypothetical proteinRP-0356.919
Fb0191 ------TP Ciclev10005974mscaffold_941199364121030
Fb0201 ------TP Ciclev10000945mscaffold_560402456045626
Fb0202 O-----TP Ciclev10027835mscaffold_82373619723740543
Fb0204 ------TP Ciclev10011983mscaffold_632623683266781
Fb0207 ------TP Ciclev10006449mscaffold_937711623771725J C_unshiu_00254:mRNA_35.1C_unshiu_00254237120239518Heat shock 22 kDa proteinRP-0321.444
Fb0208 ------TP Ciclev10032366mscaffold_42356992423573605
Fb0219 ------TP Ciclev10031436mscaffold_42115379121158006J C_unshiu_00010:mRNA_101.1C_unshiu_00010718703722812F-box only protein 6AGI-0346.274
Fb0221 ------TP Ciclev10029932mscaffold_887564428760308
Fb0223 ------SI240J C_unshiu_00303:mRNA_13.1C_unshiu_00303108935110191E3 ubiquitin-protein ligase ATL6RP-0815.967
Fb0224 ------TP Ciclev10010929mscaffold_6541527549660
Fb0225 ------TP Ciclev10008570mscaffold_148739704878979J C_unshiu_00039:mRNA_6.1C_unshiu_000395498059746Protein arginine N-methyltransferase 1RP-0533.168
Fb0227 ------TP Ciclev10026002mscaffold_729380592940407J C_unshiu_00084:mRNA_42.1C_unshiu_00084428180435326Phospholipase, patatin familyAGI-0270.082RP-02.212.696
Fb0231 ------TP Ciclev10004999mscaffold_911692601172055J C_unshiu_00007:mRNA_2.1C_unshiu_00007658914596Two-component response regulator ARR12-like proteinRP-031.143
Fb0232 ------
Fb0233 O-----SI025,SI079,SI169TP Ciclev10025557mscaffold_765355226540965J C_unshiu_00437:mRNA_15.1C_unshiu_00437131524136642WD-40 repeat-containing protein MSI4AGI-0247.382
Fb0234 ------SI250,SI265TP Ciclev10032271mscaffold_41617683616178421J C_unshiu_00086:mRNA_8.1C_unshiu_000865276454349Protodermal factor 1.3, putativeAGI-0745.424RP-0730.993
Fb0237 ------TP Ciclev10007227mscaffold_12348720023497316J C_unshiu_00338:mRNA_20.1C_unshiu_00338134033144369Hypothetical proteinAGI-0128.325
Fb0246 ------TP Ciclev10029680mscaffold_824034922406922J C_unshiu_00363:mRNA_27.1C_unshiu_00363170901174318Hypothetical proteinAGI-0880.078
Fb0270 ------TP Ciclev10004347mscaffold_92345444523457114
Fb0275 O-----TP Ciclev10008562mscaffold_11588311815887517J C_unshiu_00288:mRNA_9.1C_unshiu_002885591060461Malate dehydrogenaseAGI-0155.687
Fb0277 ------TP Ciclev10005726mscaffold_984662008470081
Fb0279 ------TP Ciclev10026511mscaffold_725909032593347
Fb0281 ------TP Ciclev10026802mscaffold_71378154413786811
Fb0293 ------SI198,SI374J C_unshiu_00152:mRNA_37.1C_unshiu_00152259580269499Hypothetical proteinAGI-0873.663
Fb0296 ------TP Ciclev10014378mscaffold_22268912422695586J C_unshiu_01495:mRNA_8.1C_unshiu_014956033662557Hypothetical proteinRP-06.110.382
Fb0301 AAvailable marker ----OOSI053TP Ciclev10014804mscaffold_21414353714146003J C_unshiu_00466:mRNA_1.1C_unshiu_0046613811161784-coumarate:coenzyme A ligase 4AGI-0692.727KmG-06RP-06.116.627
Fb0304 ------TP Ciclev10016371mscaffold_2479437484203
Fb0313 ------TP Ciclev10002602mscaffold_52980319629804310J C_unshiu_00570:mRNA_7.1C_unshiu_005706932870168Mitochondrial import inner membrane translocase subunit tim23RP-079.871
Fb0321 MDisagree by Marco analysis O-----TP Ciclev10027873mscaffold_868344876837762J C_unshiu_00918:mRNA_1.1C_unshiu_0091850107626Arginine decarboxylase 1AGI-0856.405JtR-0825.280
Fb0322 O-----TP Ciclev10030532mscaffold_432497103254808J C_unshiu_00342:mRNA_35.1C_unshiu_00342217525222590Splicing factor 3B subunit 3AGI-0714.580JtR-0764.384RP-0747.636
Fb0326 O-----TP Ciclev10002506mscaffold_54305157943053394J C_unshiu_00370:mRNA_38.1C_unshiu_00370207050209216Cell division control protein 2AGI-098.959RP-0978.225
Fb0329 ------TP Ciclev10004180mscaffold_92923783829242883J C_unshiu_00606:mRNA_2.1C_unshiu_006061369318703Methyltransferase MT-A70 family protein isoform 1AGI-0360.686
Fb0331 ------TP Ciclev10004211mscaffold_917995561809946
Fb0343 AAvailable marker O----OTP Ciclev10033061mscaffold_42505904525061910J C_unshiu_00001:mRNA_322.1C_unshiu_0000120420622044301U6 snRNA-associated Sm-like protein LSm7KmG-07
Fb0346 ------TP Ciclev10021000mscaffold_320024272008126
Fb0357 O-----SI384TP Ciclev10001633mscaffold_54055022240554434J C_unshiu_00889:mRNA_6.1C_unshiu_008894417551825Hypothetical proteinAGI-0939.104
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Fb0365 O-----SI036,SI320TP Ciclev10026391mscaffold_72087246220874659J C_unshiu_00098:mRNA_41.1C_unshiu_00098264947272086Hypothetical proteinAGI-0231.596KmG-02JtR-02-4.953
Fb0369 ------TP Ciclev10019885mscaffold_377921887795727J C_unshiu_01545:mRNA_3.1C_unshiu_015453755939424AT-rich interactive domain-containing protein 2AGI-0544.172KmG-05S30.809JtR-0516.246
Fb0372 ------SI343,SI052TP Ciclev10002666mscaffold_53512321335124730J C_unshiu_00042:mRNA_34.1C_unshiu_00042237022238272Ubiquitin-fold modifier-conjugating enzyme 1AGI-0959.896
Fb0373 O-----TP Ciclev10000030mscaffold_564044636435349J C_unshiu_00034:mRNA_15.1C_unshiu_00034150102178260ATP-dependent RNA helicase DHX29AGI-0985.810KmG-0922.909JtR-09S7.995RP-090.104
Fb0374 ------TP Ciclev10002014mscaffold_567773226781162
Fb0389 ------TP Ciclev10014121mscaffold_22517966825188103J C_unshiu_00087:mRNA_31.1C_unshiu_00087209767218135Putative pesticidal crystal cry8Ba-likeAGI-0856.850
Fb0423 O-----TP Ciclev10020919mscaffold_3867235871452
Fb0478 ------TP Ciclev10008010mscaffold_11459224814596429J C_unshiu_00071:mRNA_18.1C_unshiu_00071196512200666Beta-glucosidase 44AGI-0161.025
Fb0708 ------TP Ciclev10005455mscaffold_93123708931243737J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0374.195JtR-03219.857
Fb0722 ------TP Ciclev10008390mscaffold_11609803916100795
Fb0827 O-----SI215,SI301TP Ciclev10004432mscaffold_923534422357780J C_unshiu_00394:mRNA_9.1C_unshiu_003944171945690Chloroplast 1-deoxy-D-xylulose-5-phosphate synthaseAGI-0319.017KmG-03116.544JtR-034
Fb0995 OOthers O-----SI026TP Ciclev10024677mscaffold_711800191202408J C_unshiu_00544:mRNA_10.1C_unshiu_0054497318121662FAT domain-containing proteinAGI-0274.555KmG-0282.954JtR-0210.215
Fb1121Fb1121.lg ------TP Ciclev10014991mscaffold_22263576422640239
Fb1134.2 ------TP Ciclev10030474mscaffold_495477079559498J C_unshiu_00140:mRNA_14.1C_unshiu_00140164689176715DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5AGI-0738.546
Fb1170 ------TP Ciclev10014845mscaffold_22382986223832918
Fb1227 ------TP Ciclev10004375mscaffold_933677183376062J C_unshiu_00051:mRNA_60.1C_unshiu_00051463042471084Chloride channel proteinAGI-0319.631
Fb1430Fb1430.lg O-----TP Ciclev10005994mscaffold_918796751880523J C_unshiu_00102:mRNA_3.1C_unshiu_00102165071733460S ribosome subunit biogenesis protein NIP7 homologAGI-03
Fb1505 ------
Fb1567 ------TP Ciclev10022690mscaffold_35063767350640392NoAGI-05103.212
Fb1611 ------SI071TP Ciclev10014570mscaffold_22703018827034752No
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Fb1685 ------TP Ciclev10015934mscaffold_23569324935696515
Fb1751 ------SI264TP Ciclev10025011mscaffold_779775277984425J C_unshiu_00121:mRNA_40.1C_unshiu_00121250743257054Protein STRUBBELIG-RECEPTOR FAMILY 8
Fb1784 ------TP Ciclev10028959mscaffold_8445469446936J C_unshiu_02466:mRNA_2.1C_unshiu_0246625974055Class I chitinaseRP-0552.311
Fb1916 ------SI336TP Ciclev10016275mscaffold_21204396912046230J C_unshiu_00026:mRNA_12.1C_unshiu_00026110679112686Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4RP-06.124.027
Fb2130 ------SI069,SI117TP Ciclev10030030mscaffold_82434112924344795J C_unshiu_00021:mRNA_68.1C_unshiu_00021452003461315Hypothetical proteinAGI-0811.809KmG-0811.813
Fb2156Fb2156.lg O-----TP Ciclev10000537mscaffold_53999223439996269J C_unshiu_00096:mRNA_31.1C_unshiu_00096198494202358Poly(A) binding protein 6, putative isoform 1AGI-0941.254
Fb2159 ------SI205,SI300TP Ciclev10021136mscaffold_33960643139608387J C_unshiu_00037:mRNA_76.1C_unshiu_00037551437553057Pirin family proteinAGI-0549.856KmG-05S68.781JtR-0541.770SA-09
Gmom01 ------TP Ciclev10000531mscaffold_53327305333276013
Gmom02 ------TP Ciclev10015097mscaffold_243670684371625
Gmom03 ------TP Ciclev10019436mscaffold_318646041871328J C_unshiu_01325:mRNA_3.1C_unshiu_01325787614474Bromo-adjacent-like (BAH) domain proteinAGI-057.888
Gmom04 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.504
Gmom05 ------TP Ciclev10024623mscaffold_33372293433727855
Gmom06 ------TP Ciclev10012088mscaffold_620675862073007
Gmom07 ------TP Ciclev10021492mscaffold_372486277253007
Gmom08 ------TP Ciclev10008617mscaffold_141439484146608
Gmom09 ------TP Ciclev10008617mscaffold_141439484146608
Gmom11 ------TP Ciclev10019184mscaffold_3680835684433
Gmom12 ------TP Ciclev10009761mscaffold_12560450925605857
Gmom13 ------TP Ciclev10005787mscaffold_91322303413225922J C_unshiu_00620:mRNA_11.2C_unshiu_00620118042120892Ethylene-responsive transcription factor ERF114AGI-0856.724
Gmom15 ------
Gmom16 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.007
Gmom17 ------TP Ciclev10019228mscaffold_34747618847479361
Gmom19 ------TP Ciclev10011554mscaffold_62145081121454133J C_unshiu_00037:mRNA_27.1C_unshiu_00037166873170276Protein CCA1AGI-0454.804
Gmom22 ------TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1AGI-0778.469KmG-072.659
Gmom23 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1KmG-0220.942
Gmom24 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1AGI-0219.971
Gmom26 ------TP Ciclev10005911mscaffold_9713868716708J C_unshiu_00007:mRNA_76.1C_unshiu_00007473625476336Prefoldin subunit 3AGI-0310.918
Gmom27 ------TP Ciclev10032012mscaffold_41604632216048971
Gmom28 ------TP Ciclev10032943mscaffold_41259611312597155
Gmom29 ------TP Ciclev10000654mscaffold_51267741412680761J C_unshiu_00578:mRNA_7.1C_unshiu_005787744680730Putative WRKY transcription factor 33AGI-0222.436
Gmom31 ------TP Ciclev10008052mscaffold_12778341927789937
Gn0001 ------TP Ciclev10012905mscaffold_61284040812842940
Gn0002 ------TP Ciclev10032697mscaffold_433359453338632J C_unshiu_00465:mRNA_12.1C_unshiu_00465149021153095Hypothetical proteinAGI-0790.233JtR-0764.361
Gn0003 ------TP Ciclev10025931mscaffold_712071411210820
Gn0004 ------TP Ciclev10026028mscaffold_760115236014015J C_unshiu_00696:mRNA_14.1C_unshiu_00696122646125456Flavonol synthaseAGI-0249.699KmG-0238.471JtR-0215.126
Gn0005 MDisagree by Marco analysis ------TP Ciclev10015934mscaffold_23569324935696515J C_unshiu_00337:mRNA_13.1C_unshiu_003376888371725FibrillinAGI-0616.857KmG-0663.840NAT-06S59.976
Gn0005.2 ------TP Ciclev10015934mscaffold_23569324935696515
Gn0006 ------
Gn0007.2 ------TP Ciclev10007114mscaffold_91777857117785482
Gn0008 OOthers ------SI176TP Ciclev10005632mscaffold_91778963417793258J C_unshiu_00098:mRNA_1.1C_unshiu_00098512017442Phytoene desaturaseAGI-0346.274
Gn0009 AAvailable marker ----OOAGI-0457.369KmG-0427.843
Gn0010 ------
Gn0011 ------TP Ciclev10007488mscaffold_12481453924819264J C_unshiu_00341:mRNA_12.1C_unshiu_003418518289905Sucrose synthaseKmG-0121.459
Gn0012 ------TP Ciclev10018889mscaffold_34601123846017249J C_unshiu_00139:mRNA_16.1C_unshiu_00139135708141900Sucrose synthaseKmG-05S78.527
Gn0014.2 Bno homozygous cultivar with minor allele O-----TP Ciclev10005481mscaffold_92948865829491181J C_unshiu_00056:mRNA_20.1C_unshiu_00056144107146527Beta-carotene hydroxylase 1
Gn0016 ------KmG-0118.088
Gn0017 ------TP Ciclev10007311mscaffold_12588082425887976J C_unshiu_00005:mRNA_103.1C_unshiu_00005841899847089Sucrose phosphate synthaseAGI-0130.293KmG-0117.862
Gn0018 ------TP Ciclev10030969mscaffold_450535405061039J C_unshiu_00616:mRNA_15.1C_unshiu_0061699349106841V-type H+-transporting ATPase subunit AAGI-0884.345KmG-0216.986
Gn0019 ------TP Ciclev10002883mscaffold_52694995126952841J C_unshiu_02041:mRNA_4.1C_unshiu_020411800320672Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1KmG-0917.972JtR-09S22.316
Gn0021 AAvailable marker ----OOTP Ciclev10000597mscaffold_53963011139635609J C_unshiu_01033:mRNA_10.1C_unshiu_010334779953166Somatic embryogenesis receptor kinase 1AGI-0942.621KmG-0968.220JtR-09S97.453NAT-0983.381
Gn0027 HDisagree on Clementine haploid genotype ------AGI-0543.412
Gn0028 DDominant marker ------JtR-01S10.669
Gn0029 AAvailable marker -----O
Gn0030 MDisagree by Marco analysis ------AGI-0837.823KmG-0837.758NAT-08230.069
Gn0031 AtAvailable marker ----OOAGI-0837.706
Gn0033 MDisagree by Marco analysis ------TP Ciclev10028247mscaffold_825618452563605J C_unshiu_00363:mRNA_2.1C_unshiu_003631466316198Limonoid UDP-glucosyltransferase-like proteinAGI-0873.527KmG-0886.664NAT-08286.620
Gn0033.2 ------TP Ciclev10028247mscaffold_825618452563605
Gn0033.3 ------TP Ciclev10028247mscaffold_825618452563605
Gn0035 ------TP Ciclev10011766mscaffold_61851761118519337
Gn0037 ------TP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homologAGI-0855.656
Gn0039 ------
Gn0040 AAvailable marker ----OOSI015,SI337TP Ciclev10033176mscaffold_41623275616233365J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0743.542KmG-0756.094JtR-0748.672
Gn0041 AAvailable marker -----OJ C_unshiu_00123:mRNA_16.1C_unshiu_00123116817119061Homeobox-leucine zipper protein HAT5KmG-05S9.772JtR-0528.396
Gn0042 ------TP Ciclev10009742mscaffold_12537017625371445J C_unshiu_00498:mRNA_21.1C_unshiu_00498140388142383DeficiensJtR-086.490
Gn0043 MDisagree by Marco analysis ---O--SI323TP Ciclev10027790mscaffold_82195312921960709J C_unshiu_02574:mRNA_1.1C_unshiu_025742470Class III homeodomain leucine zipper proteinAGI-0830.721KmG-0827.458
Gn0044 ------TP Ciclev10021535mscaffold_35039957150401808
Gn0045 ------TP Ciclev10016917mscaffold_23272060932721917
Gn0046 ------TP Ciclev10001212mscaffold_52152243321525218J C_unshiu_00201:mRNA_11.2C_unshiu_00201136005138785Aspartic proteinase nepenthesin-1AGI-0764.812JtR-0823.181
Gn0047 ------TP Ciclev10011938mscaffold_61874118118744166J C_unshiu_00139:mRNA_23.1C_unshiu_00139204645207518Squamosa promoter-binding-like protein 9KmG-0448.092
Gn0048 AAvailable marker -O--OOSI289TP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7AGI-0774.225KmG-077.964JtR-074.200
Gn0049 ------TP Ciclev10028366mscaffold_816044601606311J C_unshiu_00024:mRNA_95.1C_unshiu_00024699386701126DUF1005 family proteinAGI-0877.688JtR-0817.757
Gn0050 ------TP Ciclev10024602mscaffold_353824905385009J C_unshiu_00014:mRNA_87.1C_unshiu_00014637698638678CRT binding factor 3AGI-0529.035KmG-05S21.884JtR-0519.008
Gn0051 AAvailable marker ----OOSI306,SI366TP Ciclev10011780mscaffold_62408226324084635J C_unshiu_00133:mRNA_13.1C_unshiu_001336387065165Protein UNUSUAL FLORAL ORGANSAGI-0439.510KmG-040.447
Gn0052 ------TP Ciclev10005365mscaffold_91035708410359834J C_unshiu_00367:mRNA_10.1C_unshiu_00367100255102997Male sterility MS5 family proteinKmG-03215.450JtR-03112.830
Gn0054 ------AGI-0895.075KmG-0464.581
Gn0055.2 ------
Gn0056 ------TP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5AGI-0539.424
Gn0058 ------TP Ciclev10029531mscaffold_81129775411299510J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0859.107
Gn0060.2 OOthers O-----TP Ciclev10028245mscaffold_81925962319261508
Gn0061.2 MDisagree by Marco analysis O-----TP Ciclev10031014mscaffold_42550060125505812J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0620.248
Gn0062.2 OOthers ------TP Ciclev10031039mscaffold_42550644625511133
Gn0063 OOthers O-----TP Ciclev10019925mscaffold_34093772540942854J C_unshiu_00735:mRNA_14.1C_unshiu_0073599621103733Violaxanthin de-epoxidaseAGI-0860.140KmG-0731.750
Gn0064 ULess informative for main cultivars O-----SI144,SI380TP Ciclev10019364mscaffold_32935185429354190J C_unshiu_00549:mRNA_6.1C_unshiu_0054939588419219-cis-epoxycarotenoid dioxygenase 1AGI-0542.191RP-0551.531
Gn0065 Bno homozygous cultivar with minor allele O-----J C_unshiu_00021:mRNA_4.1C_unshiu_000213417838574Phytoene desaturaseAGI-0979.316
Gn0066.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10011230mscaffold_61957817919583475J C_unshiu_00043:mRNA_12.1C_unshiu_000439021294791Carotenoid isomeraseAGI-04
Gn0067 OOthers O-----SI204,SI349TP Ciclev10004730mscaffold_92272831022730086J C_unshiu_00295:mRNA_17.1C_unshiu_00295207257208985Lycopene beta-cyclaseAGI-0346.274
Gn0068 ------TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticAGI-0268.446RP-02.29.814
Gn0068.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplastic
Gn0068.3Gn0068.y OOthers ------TP Ciclev10025089mscaffold_732224833228894
Gn0069 ULess informative for main cultivars O-----SI086,SI375TP Ciclev10008410mscaffold_11094631610949617J C_unshiu_00201:mRNA_19.1C_unshiu_00201212151227232Lycopene epsilon cyclaseAGI-0157.863
Gn0070 ------TP Ciclev10031014mscaffold_42550060125505812
Gn0071 Bno homozygous cultivar with minor allele O-----SI363TP Ciclev10031039mscaffold_42550644625511133J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0786.113
Gn0072.2 ------TP Ciclev10020671mscaffold_33532197135324490
Gn0072.3 ------TP Ciclev10020671mscaffold_33532197135324490
Gn0073 AAvailable marker OO--OOTP Ciclev10014770mscaffold_23589566235898841J C_unshiu_00077:mRNA_4.1C_unshiu_000773041032987Tonoplast dicarboxylate transporterAGI-0612.402
Gn0077 ------TP Ciclev10005481mscaffold_92948865829491181
Gn0078 MDisagree by Marco analysis ------JtR-033
Gn0079 ------TP Ciclev10004459mscaffold_92806553828070492
Gn0080 ------
Gn0081 ------
Gn0082 AAvailable marker -----O
Gn0083 ------TP Ciclev10016280mscaffold_22389181423893095
Gn0084 DDominant marker ------TP Ciclev10010857mscaffold_12832134228323314
Gn0085 ------TP Ciclev10014816mscaffold_294571929463218
Gn0086.9 MDisagree by Marco analysis ------TP Ciclev10029066mscaffold_863172056322458
Gn0087 ------
Gn0088 ------
Gn0089 ------
Gn0090 ------
Gn0091 ------
Gn0092 ------
Gn0093 ------
Gn0094 ------
Gn0095 ------
Gn0096 ------
Gn0097 ------TP Ciclev10005133mscaffold_91024623910248409J C_unshiu_00372:mRNA_8.1C_unshiu_003727703979209Naringenin-chalcone synthaseAGI-02
Gn0100 ------TP Ciclev10028245mscaffold_81925962319261508J C_unshiu_00814:mRNA_2.1C_unshiu_008141398715768Putative lycopene beta cyclaseAGI-0844.669
Gn0101 ------TP Ciclev10025706mscaffold_7662802667420J C_unshiu_00353:mRNA_30.1C_unshiu_00353203269207136Protein MID1-COMPLEMENTING ACTIVITY 1AGI-0277.881
Gn0105Gn0105.4 ------
If0001 ------TP Ciclev10015414mscaffold_263194466320851
If0002 MDisagree by Marco analysis ------TP Ciclev10016861mscaffold_23554669235549207J C_unshiu_01497:mRNA_3.1C_unshiu_014971021514601YggS family pyridoxal phosphate enzymeAGI-0619.002KmG-0662.901
If0003 Bno homozygous cultivar with minor allele ------SI130TP Ciclev10015433mscaffold_23547007835472862J C_unshiu_00048:mRNA_13.1C_unshiu_000486465267377AminomethyltransferaseAGI-0618.136JtR-06S67.371
If0004 ------TP Ciclev10001562mscaffold_54108427541089200
If0005 OOthers ------TP Ciclev10032438mscaffold_42062946320633356J C_unshiu_00015:mRNA_81.1C_unshiu_00015667011671011Glucosamine/galactosamine-6-phosphate isomerase family proteinJtR-0725.458NAT-0715.764
If0006 ------TP Ciclev10002349mscaffold_54248968442491501
If0007 ------
If0008 AAvailable marker -----OTP Ciclev10009315mscaffold_12657605926578193NoKmG-0115.635JtR-01S57.666
If0009 ------TP Ciclev10017109mscaffold_23059933530602528
If0010 AAvailable marker O---O-TP Ciclev10026308mscaffold_712649651266960J C_unshiu_00218:mRNA_11.1C_unshiu_00218634036501860S ribosomal protein L8AGI-0273.759KmG-0276.687JtR-0210.849NAT-02S71.041
If0011 Bno homozygous cultivar with minor allele ------TP Ciclev10013189mscaffold_62052256920523527J C_unshiu_00331:mRNA_8.1C_unshiu_00331122906127189PLASMODESMATA CALLOSE-BINDING PROTEIN 3
If0012 ------TP Ciclev10027933mscaffold_82357408023579813
If0201 ------TP Ciclev10005030mscaffold_92860833528612490
If0202 ------TP Ciclev10016037mscaffold_237773973781539
If0203 MDisagree by Marco analysis ------TP Ciclev10022993mscaffold_34222922442231230J C_unshiu_00322:mRNA_21.1C_unshiu_00322121122123131Small ubiquitin-related modifierAGI-0551.293KmG-05S67.257JtR-0543.446
If0204 ------TP Ciclev10031206mscaffold_42343199223438280
If0205 Bno homozygous cultivar with minor allele ------SI256J C_unshiu_00046:mRNA_66.1C_unshiu_00046551244556744Hypothetical proteinAGI-0486.280KmG-0452.960
If0206 DDominant marker ------SI208TP Ciclev10012955mscaffold_61519265215194091J C_unshiu_00034:mRNA_78.1C_unshiu_00034662958664402Universal stress protein A-like protein
If0207 HDisagree on Clementine haploid genotype ------J C_unshiu_01172:mRNA_2.1C_unshiu_011722841328712Hypothetical proteinAGI-0745.716
If0208 AAvailable marker -O-OOOSI083,SI317TP Ciclev10001680mscaffold_54062824440630241J C_unshiu_00234:mRNA_9.1C_unshiu_002349498899176TRNA-processing ribonuclease BNAGI-0939.296KmG-0972.036JtR-09S115.150NAT-0989.867
If0209 Bno homozygous cultivar with minor allele ------No
If0210 ------SI042TP Ciclev10012145mscaffold_62103591021038368J C_unshiu_00052:mRNA_38.1C_unshiu_00052265461267883Fructose-bisphosphate aldolase, cytoplasmic isozymeAGI-0273.759
If0211 AAvailable marker ----OOSI226NoAGI-0947.410KmG-0960.856
If0212 ------
If0213 ------
If0214 ------TP Ciclev10009906mscaffold_12146473221466099
If0215 ------
If0216 OOthers O-----SI174TP Ciclev10015257mscaffold_21287695212881843J C_unshiu_01838:mRNA_2.1C_unshiu_018382359431186Hypothetical proteinAGI-0974.076KmG-0126.420JtR-01S66.382RP-0929.224
If0217 ------
If0218 ------TP Ciclev10022441mscaffold_3449407451690
If0219 MDisagree by Marco analysis ------J C_unshiu_00318:mRNA_17.1C_unshiu_00318110550117056EsteraseJtR-0513.922NAT-0528.283
If0220 AAvailable marker -----OTP Ciclev10001084mscaffold_53948064739484776J C_unshiu_00457:mRNA_15.1C_unshiu_004579948899913Hypothetical protein
If0221 ------
If0222 ------TP Ciclev10021958mscaffold_365418686545524
If0223 AAvailable marker ----OONoAGI-0276.168KmG-0743.554JtR-0213.208NAT-02S71.420
Ks9001 ------TP Ciclev10008207mscaffold_12454810924552107J C_unshiu_00047:mRNA_72.1C_unshiu_00047475125488565Inter-alpha-trypsin inhibitor heavy chain-related isoform 1AGI-0127.192JtR-01S61.287
Ks9002 ------TP Ciclev10019722mscaffold_34163661641641629
Ks9003 AAvailable marker -----OTP Ciclev10014733mscaffold_284361108440408J C_unshiu_00494:mRNA_1.1C_unshiu_00494701411146Ascorbate oxidaseKmG-0919.560JtR-09S5.836
Ks9004 ------TP Ciclev10016351mscaffold_284066458407971
Ks9005 AAvailable marker O---OOSI342TP Ciclev10015338mscaffold_2290799294122J C_unshiu_00109:mRNA_36.1C_unshiu_00109219070222359TRNA-splicing ligase RtcBAGI-0213.646KmG-0223.647RP-0216.986
Ks9006 ------TP Ciclev10024917mscaffold_71127170511277014
Ks9007 ------TP Ciclev10025724mscaffold_767471396750382
Ks9008 ------TP Ciclev10002532mscaffold_53063187230632814
Ks9009 ------
Ks9010 AAvailable marker ----OOTP Ciclev10007188mscaffold_92946086629463385J C_unshiu_00056:mRNA_15.1C_unshiu_00056116304118823Receptor-like protein kinase HERK 1AGI-0462.499KmG-0439.019
Ks9011 AAvailable marker -----OTP Ciclev10004755mscaffold_92898497228989373J C_unshiu_00045:mRNA_79.1C_unshiu_00045556440562091TubulinJtR-032
Ks9012 ------TP Ciclev10001908mscaffold_54031772140321609
Ks9013 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinKmG-0745.284JtR-0739.119
Ks9014 ------TP Ciclev10028359mscaffold_82035223220354410
L9S501 ------TP Ciclev10000193mscaffold_514114321414337
L9S502 ------TP Ciclev10003166mscaffold_518756961877290
L9S503 ------TP Ciclev10003049mscaffold_530047243008333
L9S504 ------TP Ciclev10002670mscaffold_545267094528008
L9S505 ------TP Ciclev10003989mscaffold_558157155818239
L9S506 ------TP Ciclev10001154mscaffold_567490246753178
L9S507 ------TP Ciclev10001661mscaffold_571571257159270
L9S508 ------TP Ciclev10000814mscaffold_581810118183247
L9S509 ------TP Ciclev10000659mscaffold_591977749204364
L9S510 ------TP Ciclev10000342mscaffold_599503569958602
L9S511 ------TP Ciclev10001293mscaffold_599834199985631
L9S512 ------TP Ciclev10002503mscaffold_51112940911130029
L9S513 ------TP Ciclev10003624mscaffold_51135597211358542
L9S514 ------TP Ciclev10003124mscaffold_51167715511678430
L9S515 ------TP Ciclev10000571mscaffold_51215964312164071
L9S516 ------TP Ciclev10003378mscaffold_51272228212722998
L9S517 ------TP Ciclev10002443mscaffold_51306404013065284
L9S518 ------TP Ciclev10000225mscaffold_51434482114350359
L9S519 ------TP Ciclev10002183mscaffold_51520866615210042
L9S520 ------TP Ciclev10000776mscaffold_51573561415740485
L9S521 ------TP Ciclev10002914mscaffold_51604900616051176
L9S522 ------TP Ciclev10002980mscaffold_51739401717394732
L9S523 ------TP Ciclev10000858mscaffold_51822178518227885
L9S524 ------TP Ciclev10000577mscaffold_51910357319108067
L9S525 ------TP Ciclev10002050mscaffold_51978029819783698
L9S531 ------TP Ciclev10003634mscaffold_549092474911803
L9S532 ------TP Ciclev10003840mscaffold_567810096783205
L9S533 ------TP Ciclev10000860mscaffold_570639617066280
L9S534 ------TP Ciclev10003417mscaffold_580584998060536
L9S535 ------TP Ciclev10002141mscaffold_583008658301824
L9S536 ------TP Ciclev10000273mscaffold_585732818583459
L9S537 ------TP Ciclev10001547mscaffold_594717859476073
L9S538 ------TP Ciclev10003348mscaffold_595912769592610
L9S539 ------TP Ciclev10002788mscaffold_599767579977512
L9S540 ------TP Ciclev10000484mscaffold_51133690311346938
Lg2001 ------TP Ciclev10028055mscaffold_826464582649562
Lg2002 ------TP Ciclev10028055mscaffold_826464582649562J C_unshiu_00152:mRNA_44.1C_unshiu_00152294607297615Phosphoglycerate dehydrogenaseAGI-0869.974
Lg2003 ------TP Ciclev10005717mscaffold_926031342605405
Lg2004 ------TP Ciclev10028785mscaffold_825997172602090J C_unshiu_00152:mRNA_53.1C_unshiu_00152347645349890Cinnamyl alcohol dehydrogenaseAGI-0876.045
Lg2005 ------TP Ciclev10002751mscaffold_54218771442189727J C_unshiu_00192:mRNA_45.1C_unshiu_00192319592321612SCF ubiquitin ligase, SKP1 componentAGI-0934.172
Lg2006Fb2150 ------TP Ciclev10000537mscaffold_53999223439996269
Lp0001 ------TP Ciclev10006308mscaffold_916854071687081
Lp0002 ------TP Ciclev10026427mscaffold_755756235577458
Lp0003 ------
Lp0004 OOthers ------TP Ciclev10026144mscaffold_71537681815378771J C_unshiu_00703:mRNA_1.1C_unshiu_0070327934693C6HC-type zinc finger RING/U-box proteinAGI-0220.292KmG-0215.368RP-0211.119
Lp0005.3 ------TP Ciclev10001133mscaffold_53689436536899326
Lp0006 ------TP Ciclev10002349mscaffold_54248968442491501
Lp0007 ------TP Ciclev10015385mscaffold_240211674024377
Lp0008 ------TP Ciclev10004626mscaffold_92987479829879735
Lp0009 DDominant marker ------TP Ciclev10005585mscaffold_93017179130177202J C_unshiu_00134:mRNA_8.1C_unshiu_001347141076705Phosphatase 2C 76 isoform 1KmG-05S36.573JtR-0512.427
Lp0010 ------
Lp0011 ------TP Ciclev10019815mscaffold_34760594247609861
Lp0012 ------TP Ciclev10032909mscaffold_42135177621355223
Lp0013 ------TP Ciclev10004852mscaffold_91697126416973312J C_unshiu_00122:mRNA_43.1C_unshiu_00122389000391027AdenosylhomocysteinaseKmG-0915.606
Lp0014 ------TP Ciclev10001245mscaffold_53382567933829181
Lp0015 ------TP Ciclev10000566mscaffold_54255531742559854
Lp0016 ------TP Ciclev10028621mscaffold_82060777420611605
Lp0017 ------TP Ciclev10031724mscaffold_42355654023559896
Lp0018 ------TP Ciclev10028637mscaffold_81953813819541255
Lp0019 MDisagree by Marco analysis ------TP Ciclev10026623mscaffold_72092263120924709J C_unshiu_00622:mRNA_2.1C_unshiu_00622286303058350S ribosomal protein L29, chloroplasticKmG-024.377JtR-02-6.938
Lp0020 ------TP Ciclev10017167mscaffold_23484195234844319
Lp0021 AtAvailable marker O----OTP Ciclev10021502mscaffold_317716681774647J C_unshiu_00534:mRNA_8.2C_unshiu_005345350855845Aquaporin
Lp0022 ------TP Ciclev10032703mscaffold_424228612424838
Lp0023 OOthers ------
Lp0024 HDisagree on Clementine haploid genotype O-----SI010,SI302TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QAGI-0274.555RP-02.217.330
Lp0025 ------TP Ciclev10009567mscaffold_12581694925818472
Lp0026 ------TP Ciclev10030880mscaffold_433232093331825
Lp0027 ------TP Ciclev10032174mscaffold_41496725414971449
Lp0028 ------TP Ciclev10014842mscaffold_22236254822366644
Lp0029 ------TP Ciclev10003645mscaffold_5329518331024
Lp0030 ------TP Ciclev10031831mscaffold_42318570323187916
Lp0031 ------TP Ciclev10027944mscaffold_82226140822266208J C_unshiu_00639:mRNA_5.1C_unshiu_006394532149901N-terminal isoform 1AGI-089.183
Lp0032 Bno homozygous cultivar with minor allele ------SI286J C_unshiu_00679:mRNA_13.1C_unshiu_00679124222132199CwfJ-like family protein, putative isoform 1
Lp0033 ------TP Ciclev10016127mscaffold_23092339830926574
Lp0034 ULess informative for main cultivars O-----J C_unshiu_00087:mRNA_54.1C_unshiu_00087395005398280Peroxisomal membrane protein 13
Lp0035 ------TP Ciclev10005111mscaffold_92725981327263097
Lp0036 ------TP Ciclev10012725mscaffold_61299805513001834
Lp0037 OOthers ------TP Ciclev10025045mscaffold_71896348718968140
Lp0038 ------TP Ciclev10029808mscaffold_866866026688894
Lp0039 ------TP Ciclev10004396mscaffold_92230997022314448
Lp0040 Bno homozygous cultivar with minor allele ------TP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorKmG-0252.181JtR-0225.334
Lp0041 AAvailable marker -----OTP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28KmG-03217.549JtR-03114.643RP-0329.608
Lp0042 ------TP Ciclev10028234mscaffold_82134205021345004
Lp0043 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Lp0044 ------TP Ciclev10032981mscaffold_42361842423622719
Lp0045 ------
Lp0046 ------TP Ciclev10012884mscaffold_62427403124276658
Lp0047 ------
Lp0048 ------TP Ciclev10022383mscaffold_34637429246377587
Lp0049Lp0049.k ------TP Ciclev10021491mscaffold_35073675050739959
Lp0101 ------TP Ciclev10002394mscaffold_51599110815996585
Lp0102 MDisagree by Marco analysis O-----SI080,SI319,SI360,SI378TP Ciclev10020840mscaffold_33064873230651259J C_unshiu_00759:mRNA_1.1C_unshiu_007599173353Senescence-related gene 1AGI-0542.737KmG-05S41.895JtR-0528.682NAT-0537.917RP-0551.879
Lp0103 OOthers ------TP Ciclev10012274mscaffold_61639330916395378J C_unshiu_00332:mRNA_15.1C_unshiu_00332142648144673Pyridoxal biosynthesis lyase pdxSRP-0411.437
Lp0104 ------TP Ciclev10017466mscaffold_22757962727581411
Lp0105 Bno homozygous cultivar with minor allele O-----SI113,SI163,SI254TP Ciclev10026412mscaffold_7815904817239J C_unshiu_00353:mRNA_13.1C_unshiu_003539203393437Hypothetical proteinAGI-0275.939
Lp0106 ------TP Ciclev10030683mscaffold_42286897822880751
Lp0107 ------TP Ciclev10030913mscaffold_42191659221922770
Lp0108 AAvailable marker -----OTP Ciclev10026340mscaffold_755546195556993J C_unshiu_00761:mRNA_5.1C_unshiu_00761187042107240S ribosomal protein S6KmG-0241.508JtR-0218.351
Lp0109 OOthers O-----TP Ciclev10020902mscaffold_31756112717562695
Lp0110 ------TP Ciclev10009769mscaffold_12427175324272644
Lp0111 ------TP Ciclev10022339mscaffold_33609600936099799
Lp0112 AAvailable marker O-----TP Ciclev10032923mscaffold_437498093751724J C_unshiu_00236:mRNA_28.1C_unshiu_00236161422163318ATP synthase subunit d, mitochondrialAGI-0719.603RP-0750.962
Lp0113 ------TP Ciclev10007510mscaffold_12448059124484723
Lp0114 ------TP Ciclev10008315mscaffold_12862362428626008
Lp0115 ------TP Ciclev10028775mscaffold_81780942817813065
Lp0116 Bno homozygous cultivar with minor allele ------TP Ciclev10028879mscaffold_81939729419398741J C_unshiu_02034:mRNA_3.1C_unshiu_0203475738901DUF3049 family proteinJtR-0818.207NAT-0547.659
Lp0117 ------TP Ciclev10002215mscaffold_52881531428816638
Lp0118 MDisagree by Marco analysis ------J C_unshiu_00008:mRNA_8.1C_unshiu_000084636354318Protein trichome birefringence-like 33AGI-0273.759KmG-0275.522JtR-0224.745
Lp0119 AAvailable marker ----OOSI276TP Ciclev10028631mscaffold_82431572024317671J C_unshiu_00021:mRNA_65.1C_unshiu_00021426040431920Hypothetical proteinAGI-088.544
Lp0120 O-----TP Ciclev10021535mscaffold_35039957150401808
Lp0121 ------TP Ciclev10017090mscaffold_23482930034831997
Lp0122 MDisagree by Marco analysis O-----SI170TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QNAT-02S69.942RP-02.217.330
Lp0123 ------TP Ciclev10000541mscaffold_53288961432896199
Lp0124 ------TP Ciclev10015245mscaffold_21008752310092758
Lp0125 ------TP Ciclev10004499mscaffold_91115075811155385
Lp0126 AAvailable marker O---OOTP Ciclev10025164mscaffold_739468183949964J C_unshiu_00801:mRNA_10.1C_unshiu_0080197228100216Phototropic-responsive NPH3 family proteinAGI-0265.295KmG-0254.892JtR-0226.278RP-02.2
Lp0127 ------TP Ciclev10029357mscaffold_82137401921379609
Lp0128 ------TP Ciclev10027734mscaffold_828488842853210
Lp0129 ------TP Ciclev10011622mscaffold_62534941725351949
Lp0130 ------TP Ciclev10008029mscaffold_11151241511514434
Lp0131 ------TP Ciclev10006247mscaffold_92039051720391131
Lp0132 ------TP Ciclev10014204mscaffold_254690505475142
Lp0133 AtAvailable marker O---OOTP Ciclev10021187mscaffold_33965761339660222J C_unshiu_00037:mRNA_84.1C_unshiu_00037603033605555Class I chitinaseAGI-0548.590KmG-05S60.040NAT-0526.483RP-0565.128
Lp0134 ------TP Ciclev10007510mscaffold_12448059124484723
Lp0135 ------TP Ciclev10002870mscaffold_53941281939414334J C_unshiu_00457:mRNA_3.1C_unshiu_004572752128982Xylem serinease 1-like proteinJtR-0541.854
Lp0136 ------TP Ciclev10014127mscaffold_21050087910504450
Lp0137 ------TP Ciclev10021187mscaffold_33965761339660222
Lp0138 ------TP Ciclev10008908mscaffold_125999572603377
Lp0139 ------TP Ciclev10021991mscaffold_314701631473304
Lp0140 MDisagree by Marco analysis O-----TP Ciclev10016399mscaffold_23262990832634194J C_unshiu_00070:mRNA_52.1C_unshiu_00070393864397918Universal stress protein A-like proteinKmG-0212.229JtR-022.765RP-028.172
Lp0141 ------TP Ciclev10016648mscaffold_22238672722388706
Lp0142 ------TP Ciclev10032977mscaffold_429768732978308
Lp0143 Bno homozygous cultivar with minor allele ------TP Ciclev10019139mscaffold_360769496080875J C_unshiu_00159:mRNA_40.1C_unshiu_00159339926343475Translation elongation factor GAGI-0545.297JtR-0518.056
Lp0144 ------TP Ciclev10027174mscaffold_794521149461436
Lp0145 ------J C_unshiu_01491:mRNA_8.1C_unshiu_014914712250568Class I glutamine amidotransferase superfamily proteinKmG-05S40.802JtR-05
Lp0201 ------TP Ciclev10028459mscaffold_82336548123369843
Lp0202 O-----TP Ciclev10006509mscaffold_931310063134438J C_unshiu_00051:mRNA_31.2C_unshiu_00051239802243699NEDD8-activating enzyme E1 catalytic subunitAGI-0323.085
Lp0203 ------TP Ciclev10015577mscaffold_22716728927171203
Lp0204 ------TP Ciclev10008687mscaffold_12452340024526186
Lp0205 ------TP Ciclev10008932mscaffold_145416764543982
Lp0206 O-----TP Ciclev10011764mscaffold_62083650920840107J C_unshiu_00052:mRNA_56.1C_unshiu_00052452105455631Monodehydroascorbate reductaseAGI-0458.655
Lp0207 O-----TP Ciclev10021695mscaffold_361403326142252J C_unshiu_01103:mRNA_8.1C_unshiu_011036753169104Protein ODORANT1AGI-0545.374RP-0525.010
Lp0208 ------TP Ciclev10018482mscaffold_34570436145713084J C_unshiu_00326:mRNA_24.1C_unshiu_00326146528154002ABC transporter C family member 3AGI-0315.136NAT-0328.397
Lp0209 ------
Lp0210 ------TP Ciclev10012425mscaffold_61765146617653457
Lp0211 O-----TP Ciclev10009567mscaffold_12581694925818472J C_unshiu_00066:mRNA_48.1C_unshiu_00066279404280861Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1AGI-0130.175RP-0124.533
Lp0212 O-----TP Ciclev10030930mscaffold_42269705622699336J C_unshiu_00004:mRNA_48.1C_unshiu_00004381547383756Polygalacturonase 1 beta-like protein 3AGI-0769.544
Lp0213 ------TP Ciclev10012814mscaffold_62153795221540938
Lp0214 ------TP Ciclev10004881mscaffold_91707043117072209
Lp0215 ------TP Ciclev10019069mscaffold_339196563924283
Lp0216 ------TP Ciclev10000670mscaffold_584404168447120
Lp0217 ------TP Ciclev10032654mscaffold_41827417118276675
Lp0218 O-----TP Ciclev10006429mscaffold_9883603885249
Lp0219 ------TP Ciclev10032329mscaffold_461289526131314J C_unshiu_01202:mRNA_8.1C_unshiu_012025769160017Acyl-CoA N-acyltransferases superfamily protein isoform 1AGI-0161.636NAT-01S60.000
Lp0220 O-----TP Ciclev10000749mscaffold_53922121039227401J C_unshiu_00495:mRNA_21.1C_unshiu_00495125230136174Hypothetical proteinAGI-0714.968
Lp0221 ------TP Ciclev10015663mscaffold_23296036232966170
Lp0222 ------TP Ciclev10011623mscaffold_62281921222821782
Lp0223 ------TP Ciclev10000876mscaffold_54015456940160983
Lp0224 ------TP Ciclev10031564mscaffold_496277609633617
Lp0225 ------TP Ciclev10020487mscaffold_33594391535948556
Lp0226 O-----SI210TP Ciclev10027999mscaffold_828318322837109J C_unshiu_00152:mRNA_19.1C_unshiu_00152138714144356Embryonic polyadenylate-binding proteinAGI-0873.527
Lp0227 ------TP Ciclev10009468mscaffold_12842942828433154
Lp0228 ------TP Ciclev10029373mscaffold_851594285162015
Lp0229 O-----TP Ciclev10015636mscaffold_22463705324639946J C_unshiu_00136:mRNA_24.1C_unshiu_00136221432223640ARM repeat superfamily proteinRP-06.125.198
Lp0230 O-----TP Ciclev10009651mscaffold_12009457520097443
Lp0231 ------TP Ciclev10011809mscaffold_662652786272266
Lp0232 O-----TP Ciclev10030590mscaffold_42112013521127140J C_unshiu_00010:mRNA_105.1C_unshiu_00010751317757205CHASE-domain containing histidine kinase 1RP-0719.079
Lp0234 ------TP Ciclev10030998mscaffold_41714335017147918
Lp0235 O-----TP Ciclev10019848mscaffold_394660719468445J C_unshiu_00227:mRNA_19.1C_unshiu_00227186549194369Nepenthesin IIAGI-0543.412RP-0544.731
Lp0236 O-----TP Ciclev10011623mscaffold_62281921222821782
Lp0237Lp0237.k ------TP Ciclev10007524mscaffold_12598780325992258J C_unshiu_00066:mRNA_23.1C_unshiu_00066112710117006Pyrophosphate-energized vacuolar membrane proton pumpAGI-0129.815KmG-0113.444JtR-01S57.629NAT-01S8.967
Lp0301.2 ------TP Ciclev10020671mscaffold_33532197135324490
Mf0001 OOthers ------
Mf0002 ------TP Ciclev10024637mscaffold_34169705241697860
Mf0003 AAvailable marker -----OSI228
Mf0004 ------
Mf0005 ------
Mf0006 ------TP Ciclev10010036mscaffold_11755479017556053
Mf0007 ULess informative for main cultivars ------TP Ciclev10008907mscaffold_11747133017472833J C_unshiu_00044:mRNA_52.1C_unshiu_00044424343425685NADPH-dependent codeinone reductase-like protein
Mf0008 OOthers ------NoRP-06.2
Mf0009 ------
Mf0010 Bno homozygous cultivar with minor allele ------SI048,SI149TP Ciclev10032902mscaffold_41946766919468803J C_unshiu_00099:mRNA_4.1C_unshiu_00099124461335730S ribosomal protein 3, chloroplasticAGI-0755.503KmG-0742.271JtR-0735.215NAT-07
Mf0011 ------
Mf0012 AAvailable marker -----OSI131TP Ciclev10019300mscaffold_32651717626525778No
Mf0013 ------
Mf0014 ------
Mf0015 ULess informative for main cultivars ------TP Ciclev10000510mscaffold_53512501935129817No
Mf0016 ------TP Ciclev10002951mscaffold_53341166733413970
Mf0017 Bno homozygous cultivar with minor allele ------TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinAGI-0544.674
Mf0019Mf0018.2 ------TP Ciclev10032864mscaffold_41235608112357713
Mf0020 ------TP Ciclev10023252mscaffold_326458452647776NoSA-0530.880
Mf0022Mf0021.2 ------
Mf0024Mf0023.2 ------TP Ciclev10029499mscaffold_81954654119549348
Mf0025 ------TP Ciclev10009756mscaffold_12559249425593617
Mf0027Mf0026.2 ------TP Ciclev10006081mscaffold_9900723902354
Mf0029Mf0028.2 Bno homozygous cultivar with minor allele ------
Mf0031Mf0030.2 ------
Mf0032 OOthers ------TP Ciclev10013688mscaffold_61600446716005081
Mf0033 AAvailable marker ----OOTP Ciclev10010044mscaffold_162276176228389J C_unshiu_00075:mRNA_11.1C_unshiu_00075123779124531Hypothetical proteinAGI-0162.570KmG-0146.353JtR-01S106.811NAT-01S77.905
Mf0034 OOthers O-----TP Ciclev10031304mscaffold_415594901563887J C_unshiu_00012:mRNA_100.1C_unshiu_00012732963736971DEAD-box ATP-dependent RNA helicase 27RP-0773.631
Mf0035 ------
Mf0037 ------
Mf0038 ------
Mf0039 AAvailable marker O---OOSI016,SI147J C_unshiu_00343:mRNA_25.1C_unshiu_00343221381224081PLAC8 family proteinAGI-055.510KmG-05S5.643JtR-0510.014
Mf0040 ------TP Ciclev10002354mscaffold_54280956042811717
Mf0041 AAvailable marker ----OOTP Ciclev10022012mscaffold_34507682145080633J C_unshiu_00069:mRNA_16.1C_unshiu_00069123654127483Histidine-containing phosphotransfer protein 1AGI-0556.534KmG-05S73.977JtR-0538.393
Mf0044 ------TP Ciclev10004832mscaffold_92808176028084212
Mf0045 ------TP Ciclev10009632mscaffold_12284424122846485
Mf0046 ------TP Ciclev10009632mscaffold_12284424122846485
Mf0047 DDominant marker ------TP Ciclev10006308mscaffold_916854071687081J C_unshiu_00036:mRNA_24.2C_unshiu_00036126753128428Late embryogenesis abundant protein Lea5-DAGI-0314.323KmG-0317.139NAT-0350.708
Mf0048 ------TP Ciclev10014833mscaffold_23520497035210387
Mf0049 ------
Mf0050 ------TP Ciclev10010044mscaffold_162276176228389
Mf0051 ------TP Ciclev10012294mscaffold_61543494215438427
Mf0052 ------TP Ciclev10005897mscaffold_92805421428056032J C_unshiu_01194:mRNA_11.1C_unshiu_011948357384813Envelope glycoprotein
Mf0052.2 ------TP Ciclev10005897mscaffold_92805421428056032
Mf0054 ------
Mf0055 DDominant marker ----OOTP Ciclev10022212mscaffold_34555134545552620J C_unshiu_01674:mRNA_4.1C_unshiu_016741777728549Hypothetical proteinAGI-0557.948KmG-05S75.866JtR-0538.749NAT-0539.573
Mf0056.2Mf0055.2 ------TP Ciclev10022212mscaffold_34555134545552620
Mf0057 OOthers ------TP Ciclev10002349mscaffold_54248968442491501No
Mf0058 T3 or more alleleic model ------TP Ciclev10022378mscaffold_34681881746822856J C_unshiu_00053:mRNA_58.1C_unshiu_00053481338485184Nitrogen regulatory protein P-IIAGI-0857.196JtR-0539.516
Mf0059 ------TP Ciclev10032222mscaffold_415867901589604
Mf0060 ------J C_unshiu_00715:mRNA_6.1C_unshiu_007152960130242Hypothetical proteinJtR-0756.497
Mf0061 ------
Mf0062 ------TP Ciclev10009010mscaffold_12677339626776856
Mf0063 ------TP Ciclev10006352mscaffold_93045614430458784
Mf0064 ------TP Ciclev10015846mscaffold_22734458727346090
Mf0065 ------TP Ciclev10021816mscaffold_33292566432929662
Mf0066 ------
Mf0067 OOthers ------TP Ciclev10008855mscaffold_172645697269002J C_unshiu_00837:mRNA_9.1C_unshiu_008379180796079Protein phosphatase 1 regulatory subunit pprAKmG-03218.460JtR-03113.247
Mf0068 ------TP Ciclev10023101mscaffold_327181862719011
Mf0069 ------TP Ciclev10013297mscaffold_61375067113752605
Mf0070 MDisagree by Marco analysis O-----SI017TP Ciclev10017346mscaffold_230673373069249J C_unshiu_00246:mRNA_8.1C_unshiu_002466825169988Hypothetical proteinAGI-0736.616JtR-0752.611RP-0719.079
Mf0071 ------TP Ciclev10001084mscaffold_53948064739484776
Mf0072 AAvailable marker ----OOTP Ciclev10013297mscaffold_61375067113752605J C_unshiu_00155:mRNA_3.1C_unshiu_001551760819347Hypothetical proteinAGI-0491.104KmG-0458.483RP-048.126
Mf0073 HDisagree on Clementine haploid genotype ------J C_unshiu_00069:mRNA_5.1C_unshiu_000692558928375Hypothetical proteinJtR-0538.749NAT-0544.567
Mf0074 ------TP Ciclev10008734mscaffold_166179216622625
Mf0075 ------
Mf0076 AAvailable marker ----OOTP Ciclev10012554mscaffold_61170419911706676J C_unshiu_00207:mRNA_15.1C_unshiu_00207132539134984Cytosolic ascorbate peroxidaseAGI-0893.624
Mf0077 ------TP Ciclev10001792mscaffold_53982839639834822
Mf0078 ------TP Ciclev10001800mscaffold_51756472917565994
Mf0079 AAvailable marker O---OOSI067TP Ciclev10028839mscaffold_82472193724724569J C_unshiu_00984:mRNA_8.1C_unshiu_009845567658212Cinnamoyl CoA reductaseAGI-083.409KmG-08NAT-082
Mf0080 MDisagree by Marco analysis ------TP Ciclev10021936mscaffold_34420296844205663J C_unshiu_00217:mRNA_35.1C_unshiu_00217286418288656Transmembrane BAX inhibitor motif-containing protein 4AGI-0555.049KmG-05S64.740JtR-0538.503RP-0437.046
Mf0081.2Mf0080.2 OOthers ------TP Ciclev10021936mscaffold_34420296844205663
Mf0082 ------TP Ciclev10000921mscaffold_51544570115450041
Mf0083 Bno homozygous cultivar with minor allele ------TP Ciclev10015092mscaffold_23383740333842156NoAGI-0639.963
Mf0084 OOthers ------SI383TP Ciclev10012898mscaffold_64038143868J C_unshiu_01371:mRNA_1.1C_unshiu_013711774621242ADP-ribosylation factor A1FAGI-04114.409KmG-0466.806JtR-0411.413
Mf0085 ------TP Ciclev10018526mscaffold_32829314228298913
Mf0086 AAvailable marker O---OOSI220,SI315TP Ciclev10009756mscaffold_12559249425593617J C_unshiu_00066:mRNA_75.1C_unshiu_0006650099250183317.9 kDa class II heat shock proteinAGI-0126.428KmG-0119.692JtR-01S57.666RP-0169.936
Mf0087 ------TP Ciclev10023194mscaffold_33206343032064847
Mf0088 OOthers O-----TP Ciclev10001453mscaffold_551040675106917J C_unshiu_00108:mRNA_11.1C_unshiu_0010810128310549360S ribosomal protein L3RP-09
Mf0089 ------TP Ciclev10031989mscaffold_41267867112681681
Mf0090 AAvailable marker -O--OOTP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.869KmG-0211.182JtR-023.182RP-028.191
Mf0091 ------TP Ciclev10019105mscaffold_367484066756264
Mf0092 AAvailable marker ----OOSI138TP Ciclev10012056mscaffold_62113778321142157J C_unshiu_00052:mRNA_27.2C_unshiu_00052168316172622Phosphopyruvate hydrataseAGI-0459.190KmG-0430.795NAT-0411.576
Mf0093 ------TP Ciclev10005964mscaffold_92273269022736939
Mf0094 AAvailable marker ----OOTP Ciclev10026594mscaffold_737213753722616J C_unshiu_00169:mRNA_29.1C_unshiu_00169217948219072Maternal effect embryo arrest proteinAGI-0267.666KmG-0252.124JtR-0225.334
Mf0095 OOthers O-----SI290TP Ciclev10005778mscaffold_92121674821221111J C_unshiu_00160:mRNA_34.1C_unshiu_00160290257294371Transmembrane proteins 14C, putative isoform 1KmG-032JtR-03111.958RP-0343.323
Mf0096 OOthers ------SI249,SI333TP Ciclev10018252mscaffold_22777486327778271J C_unshiu_00745:mRNA_6.1C_unshiu_007454815062370Hypothetical proteinAGI-0660.007KmG-0622.141JtR-06S5.708NAT-06S10.082
Mf0097 AAvailable marker OO-OOOSI235,SI365NoAGI-0744.663KmG-0750.959JtR-0744.863NAT-073.290RP-0746.168
Mf0098.2Mf0097.2 ------
Mf0099 OOthers ------NoKmG-066.822JtR-06SNAT-06S
Mf0100 O-----TP Ciclev10026756mscaffold_783106158313304
Mf0101 OOthers ------TP Ciclev10004309mscaffold_93051333330517676
Mf0102 ------
Ov0001 ------TP Ciclev10005408mscaffold_998058999809222
Ov0002 AAvailable marker O---OOSI110,SI179TP Ciclev10032770mscaffold_424228612424838J C_unshiu_00979:mRNA_13.2C_unshiu_00979505085247860S ribosomal protein L10AGI-0713.657JtR-0768.221RP-0782.035
Ov0003 ------TP Ciclev10015260mscaffold_21583314215836770
Ov0004 ------TP Ciclev10025545mscaffold_72036008620363290J C_unshiu_00650:mRNA_9.1C_unshiu_006508667089289Myo-inositol-1 phosphate synthaseKmG-0217.680NAT-02S
Ov0005 AAvailable marker ----OOSI243,SI331TP Ciclev10019557mscaffold_34163661641641083J C_unshiu_02126:mRNA_2.1C_unshiu_021269391133195-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferaseAGI-0547.986
Ov0006 Bno homozygous cultivar with minor allele O-----TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S25.587JtR-0827.669
Ov0007.2 ------TP Ciclev10021068mscaffold_353601135362918
Ov0008 ------TP Ciclev10028019mscaffold_81765992517664551
Ov0009 ------TP Ciclev10023099mscaffold_34725756547258746
Ov0010 ------TP Ciclev10031252mscaffold_41662633816629094
Ov0011 ------TP Ciclev10002024mscaffold_53455836234564638
Ov0012 ------TP Ciclev10019638mscaffold_329331212937460J C_unshiu_00092:mRNA_50.1C_unshiu_00092356984361021Aldehyde dehydrogenaseKmG-05S100.000
Ov0013 OOthers ------TP Ciclev10005251mscaffold_91805838718060752J C_unshiu_00556:mRNA_14.1C_unshiu_00556103101105466Caffeic acid 3-O-methyltransferaseAGI-0350.691KmG-03218.852JtR-03111.918RP-0338.986
Ov0014 ------TP Ciclev10000825mscaffold_54061769140619818
Ov0015 OOthers O-----SI304TP Ciclev10026223mscaffold_782550468256442J C_unshiu_02827:mRNA_2.1C_unshiu_028271598617224Stem 28 kDa glycoproteinAGI-0234.494KmG-0235.126JtR-0219.319
Ov0016 ------TP Ciclev10031252mscaffold_41662633816629094
Ov0017 ------TP Ciclev10011979mscaffold_61816721818172180
Ov0018 ULess informative for main cultivars ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00082:mRNA_34.1C_unshiu_00082267163269630Elongation factor 1-alpha
Ov0019 ------TP Ciclev10019002mscaffold_31635722716363309
Ov0020 AAvailable marker O---OOSI055,SI143,SI213TP Ciclev10011842mscaffold_62159842921600967J C_unshiu_00037:mRNA_7.2C_unshiu_000373771940241Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclaseAGI-0455.145KmG-0422.465NAT-043.806RP-0440.905
Ov0021 ------TP Ciclev10015535mscaffold_21186390611865549
Ov0022 ------TP Ciclev10011738mscaffold_62016161320163972
Ov0023 ------TP Ciclev10018991mscaffold_34982765549832343
Ov0024 ------TP Ciclev10020504mscaffold_34698162846984276
Ov0025 ------TP Ciclev10028313mscaffold_8861284864282
Ov0026Ov0026.k ------TP Ciclev10009797mscaffold_184171588419377
Ov0027Ov0027.em ------TP Ciclev10009797mscaffold_184171588419377J C_unshiu_00584:mRNA_9.1C_unshiu_00584740897626660S ribosomal protein L28AGI-0351.749
Ov0101 ------TP Ciclev10001010mscaffold_54069180140694522
Ov0102 ------TP Ciclev10019301mscaffold_3972289976751
Ov0103 ------TP Ciclev10019410mscaffold_359912815995312
Ov0104 AAvailable marker O---OOSI216TP Ciclev10004850mscaffold_91344033213442904J C_unshiu_02379:mRNA_2.1C_unshiu_023792290625482Obtusifoliol 14-alpha demethylaseAGI-0856.724JtR-0828.207
Ov0105 MDisagree by Marco analysis O-----SI126,SI278TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantNAT-0736.023RP-07
Ov0105.2Ov0106.2 ------TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantAGI-0774.064KmG-0715.390JtR-075.947
Ov0107 ------TP Ciclev10011477mscaffold_61885502818858879
Ov0108 ------TP Ciclev10028959mscaffold_8445469446936
Ov0109 MDisagree by Marco analysis O-----SI172,SI202TP Ciclev10004309mscaffold_93051333330517676J C_unshiu_00003:mRNA_13.1C_unshiu_00003122283126575Elongation factor 2AGI-0371.060JtR-03213.729RP-0371.532
Ov0110 ------TP Ciclev10009770mscaffold_12211820322120791
Ov0111 AAvailable marker ----OOTP Ciclev10000069mscaffold_585322808539677J C_unshiu_00033:mRNA_6.1C_unshiu_000335767865071TSA: Wollemia nobilis transcribed RNA sequenceAGI-0985.810KmG-0911.923JtR-09S6.157RP-0920.238
Ov0112 OOthers ------TP Ciclev10021050mscaffold_33325246333253730J C_unshiu_01571:mRNA_4.1C_unshiu_015714383645084SulfotransferaseKmG-05S42.335RP-0553.076
Ov0113Ov0112.2 ------TP Ciclev10021050mscaffold_33325246333253730
Ov0114 ------J C_unshiu_00206:mRNA_12.3C_unshiu_002067598077488Nucleoside diphosphate kinaseKmG-03218.485JtR-03111.761
Ov0115 ------TP Ciclev10008504mscaffold_11306320113068419
Ov0116 ------TP Ciclev10032931mscaffold_431938753196468J C_unshiu_00342:mRNA_22.1C_unshiu_00342154980164222Hypothetical proteinKmG-0253.208JtR-0227.051RP-02.25.192
Ov0117 AAvailable marker O---OOSI040TP Ciclev10010926mscaffold_61910513919113780J C_unshiu_00089:mRNA_17.1C_unshiu_00089153791161685Hypothetical proteinAGI-0466.455RP-0428.160
Ov0118 AAvailable marker O---OOSI357TP Ciclev10001621mscaffold_53429485334297359J C_unshiu_03047:mRNA_1.1C_unshiu_0304714183450Dihydrodipicolinate synthaseAGI-0434.838KmG-0936.138JtR-09S72.673NAT-0955.867
Ov0119 ------TP Ciclev10016788mscaffold_22917277229175757
Ov0120 ------TP Ciclev10014574mscaffold_255335915538729
Ov0121 HDisagree on Clementine haploid genotype ------TP Ciclev10028359mscaffold_82035223220354410J C_unshiu_00320:mRNA_8.1C_unshiu_003208692988531Arogenate dehydrataseNAT-081
Ov0122 OOthers ------TP Ciclev10019557mscaffold_34163661641641083J C_unshiu_01535:mRNA_2.2C_unshiu_0153514018190805-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferaseKmG-05S65.738JtR-0541.268
Ov0123Ov0122.2 ------TP Ciclev10019557mscaffold_34163661641641083
Ov0124 ------TP Ciclev10002135mscaffold_52970668829710388
Ov0125 AAvailable marker ----OOTP Ciclev10028359mscaffold_82035223220354410J C_unshiu_00320:mRNA_8.1C_unshiu_003208692988531Arogenate dehydrataseAGI-0841.398
Ov0126 MDisagree by Marco analysis O-----TP Ciclev10022482mscaffold_34681490946817474
Ov0127Ov0126.2 ------SI124,SI284TP Ciclev10022482mscaffold_34681490946817474J C_unshiu_00053:mRNA_57.3C_unshiu_00053477728479995ADP-ribosylation factor A1FAGI-0565.510KmG-05S81.631JtR-0545.715RP-0564.195
Ov0128 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Ov0129Ov0129.k ------TP Ciclev10030928mscaffold_427170142719856
Ov0301 Bno homozygous cultivar with minor allele ------SI078TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S23.526JtR-0519.932RP-0521.590
Ov0302Ov0301.2 ------TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factor
Ov0303 ------TP Ciclev10011600mscaffold_62516085125164999
Ov0304 ------TP Ciclev10000702mscaffold_564823666484923
Ov0305 MDisagree by Marco analysis O-----SI028,SI292TP Ciclev10012499mscaffold_61690949216912088J C_unshiu_00008:mRNA_65.1C_unshiu_0000836694336950440S ribosomal protein S4AGI-0888.433KmG-0445.755RP-0415.410
Ov0306 OOthers ------SI382TP Ciclev10026199mscaffold_7224443227133NoAGI-0279.663KmG-0272.516JtR-028.671NAT-02S60.000
Ov0307 OOthers ------TP Ciclev10015790mscaffold_249370474940138
Ov0308 ------TP Ciclev10032476mscaffold_41673015016735004
Ov0309 ------TP Ciclev10022230mscaffold_380786098083078
Ov0310 ------TP Ciclev10023404mscaffold_34846339548465325J C_unshiu_00026:mRNA_46.1C_unshiu_00026334715336716Lanatoside 15-O-acetylesteraseKmG-0121.291JtR-01S61.287
Ov0311 ------TP Ciclev10022001mscaffold_31834116618342395J C_unshiu_00417:mRNA_9.1C_unshiu_004179342694543Kunitz trypsin inhibitorKmG-0410.598NAT-0982.730
Ov0312 ------TP Ciclev10018858mscaffold_313441921349935J C_unshiu_00541:mRNA_19.1C_unshiu_00541170170175878SpastinSA-098.022
Ov0313 OOthers ------TP Ciclev10002372mscaffold_54184498441847835J C_unshiu_00009:mRNA_157.1C_unshiu_0000910134781016014Diphthine synthaseKmG-0979.072
Ov0314 AAvailable marker O---OOSI107TP Ciclev10029386mscaffold_881763718177435J C_unshiu_00728:mRNA_1.1C_unshiu_0072840704922Mannan polymerase complex subunit mnn9AGI-0856.724KmG-0858.356JtR-0821.829RP-0841.217
Ov0315 ULess informative for main cultivars ------TP Ciclev10013467mscaffold_62343037523436161J C_unshiu_00098:mRNA_32.2C_unshiu_00098207615213748Putative nuclear matrix constituent protein 1-like proteinKmG-047.092
Ov0316 ------TP Ciclev10020995mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43JtR-0531.749
Ov0317Ov0316.2 ------TP Ciclev10020995mscaffold_339630243966516
Ov0318 ULess informative for main cultivars ------TP Ciclev10012779mscaffold_61940528519407278J C_unshiu_00273:mRNA_20.1C_unshiu_0027310325010518340S ribosomal protein S5
Ov0319 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinKmG-03219.158
Ov0320 ------TP Ciclev10005968mscaffold_92764007427641178J C_unshiu_00252:mRNA_13.1C_unshiu_00252892819019821 kDa proteinRP-0356.919
Ov0321 ------TP Ciclev10018918mscaffold_34277647942784038
Ov0322 ULess informative for main cultivars ------TP Ciclev10003485mscaffold_53639898836399239J C_unshiu_00241:mRNA_9.1C_unshiu_002413954640639Microsomal signal peptidase 12 kDa proteinAGI-0950.810KmG-0942.179JtR-09S62.873RP-0970.369
Ov0323 ------TP Ciclev10005490mscaffold_955491955553148
Ov0324 AAvailable marker -----OTP Ciclev10030198mscaffold_82257584522578398J C_unshiu_01619:mRNA_6.1C_unshiu_016191513924519Hypothetical proteinKmG-0823.615
Ov0325 ------TP Ciclev10016692mscaffold_23518059435182774J C_unshiu_00048:mRNA_54.1C_unshiu_00048359734361893SGS domain-containing proteinNAT-08248.374
Ov0326 ------TP Ciclev10001212mscaffold_52152243321525218
Ov0401 MDisagree by Marco analysis O-----TP Ciclev10004762mscaffold_92873600828740315NoKmG-0858.635SA-06
Ov0402 ------TP Ciclev10011849mscaffold_698475029854667
Ov0403 AAvailable marker O---OOSI136,SI298,SI325TP Ciclev10016280mscaffold_22389181423893095J C_unshiu_00081:mRNA_50.1C_unshiu_00081296655297936Chlorophyll a/b binding proteinAGI-0661.779KmG-0612.610JtR-06S
Ov0404 AAvailable marker -----OTP Ciclev10002415mscaffold_52976809129769281J C_unshiu_00731:mRNA_6.3C_unshiu_007312659828767Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseKmG-0929.016JtR-09S31.495RP-0929.347
Ov0405 ------TP Ciclev10011509mscaffold_61840685618412391
Ov0406 ------TP Ciclev10025329mscaffold_751599955165972
Ov0407 AAvailable marker ----OOTP Ciclev10000563mscaffold_53704341737051080J C_unshiu_00773:mRNA_1.1C_unshiu_00773788815416OSBP(Oxysterol binding protein)-related protein 1C isoform 3AGI-0946.097KmG-0948.606JtR-09S66.176RP-0976.027
Ov0408 AAvailable marker -----OTP Ciclev10011522mscaffold_61849178918493623J C_unshiu_00248:mRNA_30.1C_unshiu_00248247183248778UDP-glycosyltransferase 71C4KmG-0450.902RP-0423.745
Ov0409 ------TP Ciclev10022219mscaffold_347360474740432
Ov0410 ------TP Ciclev10001911mscaffold_54100505441009065
Ov0411 ------TP Ciclev10011259mscaffold_62341063623414246
Ov0412 OOthers ----OOSI050,SI222TP Ciclev10015053mscaffold_23103608831038222J C_unshiu_00143:mRNA_11.1C_unshiu_001436747569537SEC14 cytosolic factor family proteinAGI-0642.110KmG-0639.373JtR-06S15.372
Ov0413 ------TP Ciclev10028322mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeKmG-0734.263
Ov0414Ov0413.2 ------TP Ciclev10028322mscaffold_81780942817813065
Ov0415 ------TP Ciclev10007121mscaffold_923390772341173
Ov0416 ------TP Ciclev10004279mscaffold_92480794824823388
Ov0417 ------TP Ciclev10007609mscaffold_1851900857695
Ov0418 ------TP Ciclev10015900mscaffold_21186390611865549
Ov0419 AAvailable marker -----OTP Ciclev10011593mscaffold_61670917916712039J C_unshiu_00008:mRNA_31.2C_unshiu_00008178086180944Pyruvate decarboxylaseRP-0411.143
Ov0420 MDisagree by Marco analysis ------TP Ciclev10019489mscaffold_32484038624845254J C_unshiu_00286:mRNA_25.1C_unshiu_00286176709181573Methylenetetrahydrofolate reductase (NAD(P)H)AGI-0541.306JtR-0541.208
Ov0421Ov0420.2 ------TP Ciclev10019489mscaffold_32484038624845254
Ov0422 AAvailable marker -----OTP Ciclev10016314mscaffold_21107158711074479J C_unshiu_00184:mRNA_33.1C_unshiu_0018429595329873614-3-3-like protein GF14 muRP-06.128.576
Ov0423 T3 or more alleleic model O-----TP Ciclev10023016mscaffold_34295436242955051J C_unshiu_00152:mRNA_28.1C_unshiu_00152189707190632Hypothetical proteinAGI-0555.522
Ov0424 ------TP Ciclev10029115mscaffold_82348048323484398
Ov0425 Bno homozygous cultivar with minor allele ------SI051,SI291,SI351,SI371TP Ciclev10015385mscaffold_240211674024377J C_unshiu_00992:mRNA_13.1C_unshiu_009927900882132DnaJAGI-0741.317RP-0725.534
Ov0426Ov0425.2 ------TP Ciclev10015385mscaffold_240211674024377
Ov0427 ------TP Ciclev10009427mscaffold_121566792158871J C_unshiu_00553:mRNA_14.1C_unshiu_00553110847134434Hypothetical proteinKmG-05S36.268
Ov0428Ov0427.2 ------TP Ciclev10009427mscaffold_121566792158871
Ov0429Ov0429.k ------TP Ciclev10015338mscaffold_2290799294122
Ov0501 ------TP Ciclev10019938mscaffold_34808947348091232J C_unshiu_00026:mRNA_86.1C_unshiu_00026712172713868Nepenthesin IIRP-0561.026
Ov0502 ------J C_unshiu_01254:mRNA_7.1C_unshiu_012546434965139Hypothetical proteinKmG-0462.093JtR-043.789RP-09
Ov0503 AtAvailable marker O----OTP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5NAT-0519.042
Ov0504Ov0503.2 ------TP Ciclev10020582mscaffold_32838221828386683
Ov0505 AAvailable marker -----OTP Ciclev10031252mscaffold_41662633816629094J C_unshiu_00250:mRNA_14.1C_unshiu_002508257384397Tyrosine decarboxylaseKmG-0753.887JtR-0748.672NAT-073.814
Ov0506Ov0505.2 ------TP Ciclev10031252mscaffold_41662633816629094
Ov0507 AAvailable marker -----OTP Ciclev10031860mscaffold_4642157644823
Ov0508Ov0507.2 ------SI322TP Ciclev10031860mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-078.291JtR-0776.060
Ov0509 ULess informative for main cultivars O-----NoAGI-09102.280RP-0921.445
Ov0510 MDisagree by Marco analysis ------TP Ciclev10011175mscaffold_61001656410019369J C_unshiu_00279:mRNA_11.1C_unshiu_00279116848119657Phenylalanine ammonia-lyase 1KmG-0462.284JtR-043.789
Ov0511 ------TP Ciclev10032764mscaffold_461014826103243
Ov0512 OOthers O-----TP Ciclev10006241mscaffold_92719850827199642J C_unshiu_00433:mRNA_19.1C_unshiu_00433116730118286Small heat shock proteinAGI-0340.361KmG-03225.743JtR-031NAT-03
Ov0513 OOthers O-----TP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00009:mRNA_59.1C_unshiu_00009325807333424Hypothetical proteinAGI-0438.903KmG-045.110RP-0460.491
Ov0514 ------TP Ciclev10004975mscaffold_974363557440439
Ov0515 ------TP Ciclev10020337mscaffold_31487842714882285J C_unshiu_01955:mRNA_4.1C_unshiu_019552197026584DUF760 family proteinKmG-0140.558
Ov0516 ------TP Ciclev10020524mscaffold_33533219135335063
Ov0517 ------
Ov0518 ------TP Ciclev10009133mscaffold_11718503217187893
Ov0519 ------
Ov0520 OOthers O-----TP Ciclev10029053mscaffold_847123934713689J C_unshiu_00438:mRNA_3.1C_unshiu_004383434335619BURP domain-containing proteinAGI-0833.144JtR-0826.748
Ov0521 ------TP Ciclev10003767mscaffold_51516804715173092
Ov0522 ------TP Ciclev10026806mscaffold_72005647520058190
Ov0523 ------TP Ciclev10011639mscaffold_61776261417767198
Ov0524 ------TP Ciclev10027930mscaffold_82461359724623540
Ov0525 ULess informative for main cultivars O-----TP Ciclev10015260mscaffold_21583314215836770J C_unshiu_01875:mRNA_4.1C_unshiu_018753598339196ADP/ATP translocase 1AGI-0691.522SA-0627.092
Ov0526 OOthers ------TP Ciclev10001212mscaffold_52152243321525218J C_unshiu_00201:mRNA_11.2C_unshiu_00201136005138785Aspartic proteinase nepenthesin-1KmG-09JtR-09S0.758NAT-09
Sd0001 ------TP Ciclev10013084mscaffold_61634448216346981
Sd0002 ------
Sd0003 ------TP Ciclev10001661mscaffold_571571257159270
Sd0004 ------J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0840.459
Sd0005 ------TP Ciclev10008384mscaffold_123447902346942
Su0001 ------TP Ciclev10012726mscaffold_61631284016314254
Su0002 ------TP Ciclev10007245mscaffold_12323631223242718
Su0003 ------TP Ciclev10016063mscaffold_21045689910459385
Su0004 ------TP Ciclev10022825mscaffold_358294595830556
Su0005 ------
Su0008 ------TP Ciclev10005600mscaffold_9729077730936
Tf0001.2 AAvailable marker OOO-OOTP Ciclev10020248mscaffold_386475298652282J C_unshiu_00580:mRNA_10.1C_unshiu_005807511881473Transcription factor BIM1AGI-0541.893
Tf0002.2 ------TP Ciclev10026433mscaffold_715078041510299
Tf0003.2 OOthers O-----TP Ciclev10002471mscaffold_53780887837811097J C_unshiu_00238:mRNA_14.1C_unshiu_00238116142129209Hypothetical proteinAGI-0944.054
Tf0004 ------SI219,SI330TP Ciclev10014045mscaffold_23307482133084014J C_unshiu_00153:mRNA_7.1C_unshiu_001536640675053Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2AGI-0632.312
Tf0005.2 AAvailable marker O----OTP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homolog
Tf0006 ------TP Ciclev10011540mscaffold_61829949718301431
Tf0007 ------TP Ciclev10018564mscaffold_32272121722725936
Tf0008 ------TP Ciclev10006582mscaffold_92916915729173419
Tf0009.2 ------TP Ciclev10032838mscaffold_4213798215848
Tf0010 ------TP Ciclev10021038mscaffold_310542571056078J C_unshiu_00609:mRNA_18.1C_unshiu_006097788379313Putative WRKY transcription factor 41AGI-05
Tf0011.2 OOthers O-----TP Ciclev10018614mscaffold_31107879811089090J C_unshiu_02207:mRNA_3.1C_unshiu_02207980219021Hypothetical proteinAGI-0542.191
Tf0012 AAvailable marker ----OOTP Ciclev10018673mscaffold_33760149337607586J C_unshiu_00502:mRNA_21.1C_unshiu_00502155419162660Protein NLP8AGI-0547.173
Tf0013 OOthers OOO-OOSI161,SI362TP Ciclev10027769mscaffold_81340861013413938J C_unshiu_01226:mRNA_1.1C_unshiu_012262055925720DNA replication licensing factor MCM2AGI-0856.123
Tf0014.2 ------TP Ciclev10030185mscaffold_82497631524979483J C_unshiu_00271:mRNA_9.1C_unshiu_002715632561820Transcription factorAGI-08
Tf0015 ------TP Ciclev10021571mscaffold_34795619547957207
Tf0016 ------SI345TP Ciclev10001979mscaffold_53983998439841860J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0942.158
Tf0017 ------SI285TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorAGI-0528.617
Tf0018.2 ------TP Ciclev10015806mscaffold_269009926905827
Tf0019 ------SI056,SI347TP Ciclev10001255mscaffold_54188129741883386J C_unshiu_00009:mRNA_161.1C_unshiu_0000910493241051358C2H2-like zinc finger proteinAGI-0934.799
Tf0020 ------SI154TP Ciclev10026414mscaffold_722894552291216J C_unshiu_00025:mRNA_31.1C_unshiu_00025258446260200Homeobox leucine zipper proteinAGI-0271.294
Tf0021 AAvailable marker -----OTP Ciclev10011169mscaffold_62190555721908832J C_unshiu_00079:mRNA_39.1C_unshiu_00079273228275864BZIP transcription factor family protein
Tf0022 MDisagree by Marco analysis O-----SI116TP Ciclev10005681mscaffold_93123708931243866J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0378.631
Tf0023.2 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0024.2 ------TP Ciclev10026400mscaffold_799766219980176
Tf0025.2 ------TP Ciclev10026197mscaffold_745130374514995
Tf0026 O-----SI111,SI288TP Ciclev10025369mscaffold_7285299292550J C_unshiu_00312:mRNA_28.1C_unshiu_00312151229158232UbiquilinAGI-0278.531
Tf0027 ------SI046TP Ciclev10026602mscaffold_71391168413912447J C_unshiu_00792:mRNA_11.1C_unshiu_007929233193069Ethylene-responsive transcription factor ERF003AGI-0738.916
Tf0028 ------SI377TP Ciclev10022572mscaffold_31978071119782241J C_unshiu_00443:mRNA_20.1C_unshiu_00443195567202424MADS-box transcription factor
Tf0029 ------TP Ciclev10027901mscaffold_82188737221893128J C_unshiu_00500:mRNA_16.1C_unshiu_00500147319151840Auxin response factorAGI-0827.318
Tf0030.2 ------TP Ciclev10027306mscaffold_71610872316113463
Tf0031.2 ------TP Ciclev10002789mscaffold_54279953842801821
Tf0032 AAvailable marker O---OOTP Ciclev10026014mscaffold_79415597631J C_unshiu_00706:mRNA_8.1C_unshiu_007065152554837AT-hook motif nuclear-localized protein 10AGI-0278.531
Tf0033 ------TP Ciclev10008659mscaffold_12687207126875269
Tf0033.2 ------TP Ciclev10008659mscaffold_12687207126875269
Tf0034 ------TP Ciclev10012593mscaffold_62385097023856058
Tf0035 ------TP Ciclev10016461mscaffold_22904775829049298
Tf0036 AAvailable marker O---OOTP Ciclev10022032mscaffold_34385026943852816J C_unshiu_01051:mRNA_11.1C_unshiu_010519436996339Auxin-responsive protein IAA14AGI-0553.260
Tf0037 ------TP Ciclev10005726mscaffold_984662008470081
Tf0038.2 ------TP Ciclev10004955mscaffold_92592268925932568
Tf0039 ------TP Ciclev10020926mscaffold_34024064440244399
Tf0040.2 ------TP Ciclev10002260mscaffold_5406520410924
Tf0041 ------TP Ciclev10009354mscaffold_12055079220553673
Tf0042.2 AAvailable marker O----OTP Ciclev10016820mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical protein
Tf0043 ------TP Ciclev10032519mscaffold_42482026924824732J C_unshiu_00001:mRNA_295.1C_unshiu_0000118713011874281Agamous-like MADS-box protein AGL15AGI-0784.593
Tf0044 ------TP Ciclev10012593mscaffold_62385097023856058
Tf0045 ------SI303,SI321TP Ciclev10032837mscaffold_42349602023497466J C_unshiu_00001:mRNA_74.1C_unshiu_00001490607491890Homeobox transcription factorAGI-0774.573
Tf0046.2 ------TP Ciclev10026046mscaffold_71330859313311348
Tf0047 ------TP Ciclev10028908mscaffold_810637111065289
Tf0048 ------TP Ciclev10020631mscaffold_34195554041957174
Tf0049 ------SI328TP Ciclev10008919mscaffold_12427399324277800J C_unshiu_00047:mRNA_33.1C_unshiu_00047212549221653WD domain protein-likeAGI-0126.841
Tf0050 ------SI104,SI346TP Ciclev10012152mscaffold_62487484024876388J C_unshiu_00135:mRNA_12.1C_unshiu_001358426085810Myb-related protein 306AGI-0436.106
Tf0051 ------SI027,SI214TP Ciclev10021952mscaffold_339640363966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0525.590
Tf0052 ------TP Ciclev10015808mscaffold_269013506905827
Tf0053 ------SI305TP Ciclev10022321mscaffold_32915342529156189J C_unshiu_01169:mRNA_3.1C_unshiu_011693914141442Peptide methionine sulfoxide reductase B5AGI-0542.265
Tf0054 O-----SI238TP Ciclev10000100mscaffold_54310899843114214J C_unshiu_01422:mRNA_2.1C_unshiu_014221515033598Hypothetical proteinAGI-0921.045
Tf0055.2 ------TP Ciclev10020053mscaffold_35013383750139049
Tf0056 AAvailable marker O---OOSI061,SI137TP Ciclev10012265mscaffold_62230592222308021J C_unshiu_00252:mRNA_6.1C_unshiu_002524863249537Myb domain protein 42AGI-0449.225
Tf0057 ------TP Ciclev10000650mscaffold_52124349321247521
Tf0058 ------SI257TP Ciclev10009065mscaffold_12088510220889283J C_unshiu_00395:mRNA_8.2C_unshiu_003955097854866Fertilization-independent endosperm proteinAGI-0146.623
Tf0059 ------SI101TP Ciclev10007297mscaffold_11288372212897805J C_unshiu_00450:mRNA_3.1C_unshiu_004503695658462AGC family Serine/Threonine kinase family proteinAGI-0156.416
Tf0060 ------TP Ciclev10014642mscaffold_23551379635516719
Tf0061 ------SI150,SI186TP Ciclev10001592mscaffold_53515969035164384J C_unshiu_00764:mRNA_4.1C_unshiu_007643089936628Auxin-responsive protein IAA8AGI-0961.651
Tf0062 Bno homozygous cultivar with minor allele O--O--SI223TP Ciclev10012377mscaffold_61182647211830875J C_unshiu_00207:mRNA_24.2C_unshiu_00207252955255240Transcription factor ASG4AGI-0893.624
Tf0063 ------TP Ciclev10014617mscaffold_284187898421898
Tf0064 ------TP Ciclev10005649mscaffold_92340909723411093
Tf0065 ------SI142TP Ciclev10030696mscaffold_41394579513951313J C_unshiu_00357:mRNA_3.1C_unshiu_003573518939739Auxin response factorAGI-0741.876
Tf0066 ------SI221TP Ciclev10008812mscaffold_11827081818273015J C_unshiu_00187:mRNA_34.1C_unshiu_00187287391289585NAC domain-containing protein 72AGI-0158.420
Tf0067 OOthers O-----SI033,SI187TP Ciclev10025950mscaffold_784387028442381J C_unshiu_00290:mRNA_9.1C_unshiu_002907419477624Transcription factorAGI-025.104
Tf0068 ------SI106TP Ciclev10020724mscaffold_34414130544144453J C_unshiu_00217:mRNA_25.1C_unshiu_00217201916205032Heat shock transcription factor A7a1AGI-0554.268
Tf0069 ------SI199TP Ciclev10001715mscaffold_53856619238571337J C_unshiu_00183:mRNA_2.1C_unshiu_001832013426910Transcription factor RF2bAGI-0942.789RP-0977.126
Tf0070 OOthers O-----SI277TP Ciclev10002250mscaffold_53974875439753073J C_unshiu_01089:mRNA_6.1C_unshiu_010892264326826Basic helix-loop-helix family proteinAGI-0945.029
Tf0071 ------SI084,SI146TP Ciclev10022102mscaffold_32661074726612959J C_unshiu_00167:mRNA_6.1C_unshiu_001675730062494HAUS augmin-like complex subunitAGI-0346.274
Tf0072 ------TP Ciclev10005403mscaffold_92875727428759075J C_unshiu_00045:mRNA_48.1C_unshiu_00045372168373811Heat stress transcription factor B-4AGI-0335.962
Tf0073 ------TP Ciclev10011201mscaffold_61984088119844299
Tf0074 O-----TP Ciclev10005366mscaffold_92844451228446074J C_unshiu_00045:mRNA_7.1C_unshiu_000456260863842TCP family transcription factorAGI-0337.816
Tf0075 ------SI059,SI248TP Ciclev10010972mscaffold_61914230719156510J C_unshiu_00089:mRNA_11.1C_unshiu_00089108874122025Homoserine kinaseAGI-0466.455
Tf0076 ------SI266TP Ciclev10031150mscaffold_472001357204232J C_unshiu_00013:mRNA_63.3C_unshiu_00013459064463137NAC domain-containing protein 78AGI-0738.565
Tf0077 O-----SI135TP Ciclev10008135mscaffold_12843397228437921J C_unshiu_00590:mRNA_15.1C_unshiu_005908643090131WRKYAGI-0134.814
Tf0078.2 ------TP Ciclev10020248mscaffold_386475298652282
Tf0079 MDisagree by Marco analysis O--O--SI270,SI294TP Ciclev10021287mscaffold_370470247049430J C_unshiu_00425:mRNA_7.1C_unshiu_004253560838027Heat stress transcription factor B-4AGI-0545.092
Tf0080 ------TP Ciclev10011039mscaffold_61761120117617794
Tf0081 ------SI038,SI324TP Ciclev10021980mscaffold_33821446838216861J C_unshiu_00575:mRNA_8.1C_unshiu_005754769351431Leucine-rich repeat disease resistance protein-likeAGI-0548.590
Tf0082.2 ------TP Ciclev10018963mscaffold_34747618847482822
Tf0083 ------SI129TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Tf0084 ------TP Ciclev10000121mscaffold_53828804738296128J C_unshiu_00183:mRNA_40.1C_unshiu_00183305878313881Transcription elongation factor SPT5AGI-0944.096
Tf0085 ------SI094,SI211TP Ciclev10012088mscaffold_620675862073007J C_unshiu_00176:mRNA_13.1C_unshiu_001768997597731Transcription factor-like protein DPBAGI-0896.807
Tf0086 ------TP Ciclev10018915mscaffold_36215767039
Tf0087 ------SI166,SI271,SI287TP Ciclev10031120mscaffold_41141233111417624J C_unshiu_00019:mRNA_18.1C_unshiu_00019190344195992Two-component response regulator-like APRR2AGI-0735.897
Tf0088 MDisagree by Marco analysis O-----SI066TP Ciclev10001291mscaffold_54127520141278829J C_unshiu_00127:mRNA_34.1C_unshiu_00127251592254627Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1AGI-0935.763
Tf0089 ------TP Ciclev10020367mscaffold_33289585432900578
Tf0090 AAvailable marker O----OTP Ciclev10031135mscaffold_41651904616521918J C_unshiu_00086:mRNA_45.1C_unshiu_00086374812377677Transcription factor bHLH62
Tf0091 ------TP Ciclev10019140mscaffold_313011921305787
Tf0092 ------SI099TP Ciclev10007435mscaffold_132856013291534J C_unshiu_00006:mRNA_60.1C_unshiu_00006496127502071Class III HD-Zip family protein
Tf0093.2 AAvailable marker O---OOTP Ciclev10002569mscaffold_52941314329414562J C_unshiu_00110:mRNA_25.1C_unshiu_00110149681150624Auxin-responsive protein IAA4AGI-0986.512
Tf0094 ------SI006TP Ciclev10031937mscaffold_42395703823959134J C_unshiu_00001:mRNA_145.1C_unshiu_00001950657954895Myb family transcription factor APLAGI-0777.141
Tf0095 O-----TP Ciclev10016229mscaffold_23441215234415059
Tf0096 O-----TP Ciclev10028804mscaffold_82136937321370728J C_unshiu_00784:mRNA_1.1C_unshiu_007842971652Transcription factor RAX3AGI-0834.042
Tf0097 ------TP Ciclev10005329mscaffold_91303931313041944
Tf0098.2 ------TP Ciclev10001945mscaffold_53655050736552800
Tf0099.2 ------TP Ciclev10019949mscaffold_372866617290182
Tf0100 ------TP Ciclev10031899mscaffold_42291261522914628
Tf0101 ------TP Ciclev10015215mscaffold_22316367323168238
Tf0102 ------TP Ciclev10008813mscaffold_1734373736031
Tf0103 ------TP Ciclev10002094mscaffold_5354416357301J C_unshiu_01920:mRNA_2.1C_unshiu_019201014012134Putative NAC domain-containing protein 94AGI-0993.685
Tf0104 ------TP Ciclev10011554mscaffold_62145081121454133
Tf0105 ------TP Ciclev10030696mscaffold_41394579513951313
Tf0106 ------TP Ciclev10006161mscaffold_911280461129318J C_unshiu_00007:mRNA_6.1C_unshiu_000074959950702GATA transcription factor 15AGI-037.674
Tf0107 ------TP Ciclev10031190mscaffold_42390818923912723
Tf0108 ------TP Ciclev10021923mscaffold_368284816829499
Tf0109.2 ------TP Ciclev10013781mscaffold_62530682925315243
Tf0110 ------TP Ciclev10019339mscaffold_34806348348066386
Tf0111 ------TP Ciclev10005142mscaffold_922340662238313
Tf0112 O-----TP Ciclev10031118mscaffold_41701458217026325J C_unshiu_00225:mRNA_9.1C_unshiu_002253709044898Regulation of nuclear pre-mRNA domain-containing protein 1BAGI-0743.014
Tf0113 ------TP Ciclev10001251mscaffold_53869574738699629
Tf0114 ------TP Ciclev10015049mscaffold_22382632323829613
Tf0115 ------TP Ciclev10020967mscaffold_371977127199779
Tf0116 ------TP Ciclev10025925mscaffold_735419243543863
Tf0117 ------TP Ciclev10005596mscaffold_91510737515113804J C_unshiu_00170:mRNA_11.1C_unshiu_001709120597326Myb family transcription factor APLAGI-0346.274
Tf0118 ------TP Ciclev10008617mscaffold_141439484146608
Tf0119 AAvailable marker ----OOTP Ciclev10014416mscaffold_23556423835570619J C_unshiu_01497:mRNA_5.1C_unshiu_014972029733375Hypothetical proteinAGI-0619.002
Tf0120 ------TP Ciclev10024826mscaffold_733768263385936
Tf0121 ------TP Ciclev10005787mscaffold_91322303413225922
Tf0122 ------TP Ciclev10020009mscaffold_32462062324627357J C_unshiu_02869:mRNA_1.1C_unshiu_02869188510204Hypothetical proteinAGI-0541.306
Tf0123 ------TP Ciclev10001914mscaffold_54155511841556812
Tf0124 ------TP Ciclev10007717mscaffold_12745735827462893J C_unshiu_00237:mRNA_37.1C_unshiu_00237259818273281Dethiobiotin synthaseAGI-0134.062
Tf0125 ------TP Ciclev10025501mscaffold_71624952316255343J C_unshiu_01042:mRNA_11.1C_unshiu_010428657791963Ubiquitin-specific protease family C19 proteinAGI-0221.337
Tf0126 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0127 ------TP Ciclev10023918mscaffold_310844671086978
Tf0128.2 ------TP Ciclev10023354mscaffold_31993649919941380
Tf0129 ------TP Ciclev10029032mscaffold_81928817719290093
Tf0130 ------TP Ciclev10001027mscaffold_51974013319745806J C_unshiu_00050:mRNA_15.1C_unshiu_00050195528200204Transcription factor GAMYBAGI-09103.217
Tf0131.2 ------TP Ciclev10000622mscaffold_53554895935554067
Tf0132 ------TP Ciclev10026056mscaffold_734299643433239
Tf0133.2 ------TP Ciclev10018575mscaffold_33334969033357142
Tf0134 ------TP Ciclev10015364mscaffold_22466710224672331
Tf0135 ------TP Ciclev10019781mscaffold_31397737713980070
Tf0136 ------TP Ciclev10011338mscaffold_62102883721031557
Tf0137 ------TP Ciclev10018849mscaffold_34648214946489836
Tf0138 ------TP Ciclev10003996mscaffold_52712382627127430
Tf0139 ------TP Ciclev10026199mscaffold_7224443227133
Tf0140 ------TP Ciclev10004457mscaffold_9225971232459J C_unshiu_00007:mRNA_144.1C_unshiu_00007929895935477Squamosa promoter-binding-like protein 1AGI-039.830
Tf0141 ------TP Ciclev10019130mscaffold_315939791598159
Tf0142 ------TP Ciclev10012377mscaffold_61182647211830875
Tf0143 ------SI127TP Ciclev10004758mscaffold_93004045730044615J C_unshiu_00134:mRNA_22.1C_unshiu_00134203848206784Sigma factorAGI-0368.846
Tf0144 ------SI125,SI189,SI192TP Ciclev10028782mscaffold_880090008012045J C_unshiu_00682:mRNA_12.1C_unshiu_006828633489311Transcription factor bHLH121AGI-0856.439
Tf0145 ------SI092TP Ciclev10022479mscaffold_384864918488997J C_unshiu_00154:mRNA_7.1C_unshiu_001544913160112Floral homeotic protein APETALA 1
Tf0146 OOthers ------TP Ciclev10020263mscaffold_33811119138116265
Tf0147 ------TP Ciclev10001956mscaffold_51576493715766976J C_unshiu_00293:mRNA_8.1C_unshiu_00293104196105925NAC transcription factorAGI-0222.436
Tf0148 AAvailable marker O---OOSI119TP Ciclev10032816mscaffold_42099870821001535J C_unshiu_00010:mRNA_116.1C_unshiu_00010869802872410Putative WRKY transcription factor 75AGI-0764.812
Tf0149 HDisagree on Clementine haploid genotype O-----SI128,SI269TP Ciclev10002290mscaffold_52940084629403554J C_unshiu_00110:mRNA_26.1C_unshiu_00110160409163111Auxin-responsive protein IAA16AGI-0985.976RP-0932.826
Tf0150 AAvailable marker OO-OOOSI262TP Ciclev10028292mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Tf0151 AAvailable marker O---OOSI159,SI281TP Ciclev10002917mscaffold_53535733335359897NoAGI-0960.528RP-0941.892
Tf0152 AAvailable marker O---OOTP Ciclev10021000mscaffold_320024272008126J C_unshiu_01105:mRNA_2.1C_unshiu_0110536818106AT-hook motif nuclear localized protein 1AGI-058.506
Tf0153 AAvailable marker O---OOTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit betaAGI-0541.267
Tf0154 AAvailable marker O----OTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit beta
Tf0155 ------TP Ciclev10028860mscaffold_864741956475882
Tf0156 ------TP Ciclev10031622mscaffold_42502735725030551
Tf0158 ------TP Ciclev10019607mscaffold_348831244889593
Tf0159 ------TP Ciclev10002789mscaffold_54279953842801821
Tf0160 ------TP Ciclev10026706mscaffold_7252320254023
Tf0161 ------TP Ciclev10009165mscaffold_12825430728257305
Tf0163 AAvailable marker O---OOTP Ciclev10010423mscaffold_12674082226744016J C_unshiu_00105:mRNA_35.1C_unshiu_00105316978320206RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1AGI-0131.240
Tf0165 AAvailable marker O---OOTP Ciclev10031793mscaffold_41960547319608059J C_unshiu_00099:mRNA_19.1C_unshiu_00099154500156794Two-component response regulator ARR18AGI-0755.503
Tf0166 ------SI156TP Ciclev10000524mscaffold_51968257919686163J C_unshiu_00050:mRNA_13.1C_unshiu_00050140837153470Hypothetical proteinAGI-09101.351
Tf0167 ------SI230,SI241,SI247TP Ciclev10030998mscaffold_41714335017147918J C_unshiu_00478:mRNA_2.1C_unshiu_004781923227824Sigma factorAGI-0746.244
Tf0168 AAvailable marker OO-OOOSI175TP Ciclev10007563mscaffold_12489876924905716J C_unshiu_00341:mRNA_22.1C_unshiu_00341170777178753AT-rich interactive domain-containing protein 4AGI-0125.752
Tf0169 ------TP Ciclev10004115mscaffold_922844842302268
Tf0170 ------TP Ciclev10005681mscaffold_93123708931243866
Tf0171 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0172 O-----TP Ciclev10026400mscaffold_799766219980176J C_unshiu_00496:mRNA_5.1C_unshiu_004964806950951Auxin-induced protein IAA6AGI-0210.638
Tf0173 O-----TP Ciclev10015413mscaffold_22609734326099320J C_unshiu_00259:mRNA_35.1C_unshiu_00259219790227265Hypothetical proteinRP-06.128.110
Tf0175 ------TP Ciclev10010825mscaffold_150545515056146
Tf0176 ------TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical proteinRP-01
Tf0177 ------SI133TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical protein
Tf0178 ------TP Ciclev10004481mscaffold_972329597238380
Tf0181 ------TP Ciclev10011164mscaffold_61469451314700102
Tf0183 ------TP Ciclev10021488mscaffold_33087388630877367
Tf0184 AAvailable marker O---OOTP Ciclev10019968mscaffold_34539385745398298J C_unshiu_00546:mRNA_8.1C_unshiu_005467502378260Zinc finger CCCH domain-containing protein 3AGI-0557.948
Tf0185 O-----TP Ciclev10014198mscaffold_23174043131747095
Tf0186 ------TP Ciclev10024602mscaffold_353824905385009
Tf0187 ------TP Ciclev10013228mscaffold_619501211950908
Tf0188 ------TP Ciclev10012285mscaffold_61577497615777653
Tf0189 ------TP Ciclev10001738mscaffold_52137938421385293
Tf0191 ------TP Ciclev10015847mscaffold_258214015825173
Tf0193 ------TP Ciclev10007849mscaffold_12716727127171073
Tf0194 ------TP Ciclev10018639mscaffold_34299688643001548
Tf0195 MDisagree by Marco analysis O-----TP Ciclev10030351mscaffold_86799774191J C_unshiu_01137:mRNA_4.1C_unshiu_011373083736569AT-rich interactive domain-containing protein 3AGI-0887.683
Tf0196 ------TP Ciclev10025815mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinAGI-024.033
Tf0197 ------TP Ciclev10012447mscaffold_61480482814808139
Tf0198 AAvailable marker O----OTP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7
Tf0199 ------SI023,SI157TP Ciclev10000697mscaffold_53099481230999834J C_unshiu_00422:mRNA_12.1C_unshiu_00422116754121159Serine/threonine-protein kinase isoform 2
Tf0200 O-----TP Ciclev10030297mscaffold_82109556921102194
Tf0201 O-----SI195TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1
Tf0202 ------TP Ciclev10032893mscaffold_436366673641089
Tf0203 ------SI121TP Ciclev10014039mscaffold_21045959310472483J C_unshiu_00403:mRNA_13.1C_unshiu_0040388988102135Homeodomain transcriptional regulator
Tf0204 ------TP Ciclev10027848mscaffold_82358970223593390
Tf0205 OOthers O-----SI274TP Ciclev10005062mscaffold_91638385116393557J C_unshiu_00094:mRNA_29.1C_unshiu_00094262934272307UBX domain-containing protein 1AGI-0346.274
Tf0206 ------TP Ciclev10005479mscaffold_92316129423166939
Tf0207 ------TP Ciclev10014026mscaffold_290089209021876
Tf0208 ------SI181TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 protein
Tf0209 ------TP Ciclev10015591mscaffold_23564241235646764
Tf0210 ------SI183TP Ciclev10004533mscaffold_91199328211999324J C_unshiu_00926:mRNA_13.1C_unshiu_00926108384111875Zinc finger protein NUTCRACKERAGI-0856.724
Tf0211 ------TP Ciclev10008192mscaffold_12860732528610917
Tf0212 ------SI196TP Ciclev10030538mscaffold_41981680019825304J C_unshiu_00535:mRNA_20.1C_unshiu_00535166525174142Putative nuclear matrix constituent protein 1-like proteinAGI-0756.586
Tf0213 OOthers O-----TP Ciclev10030571mscaffold_41883954618848948J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putativeAGI-0748.581
Tf0214 ------SI020TP Ciclev10020053mscaffold_35013383750139049J C_unshiu_00014:mRNA_67.1C_unshiu_00014458017462942Transcription factor UNE10
Tf0215 ------TP Ciclev10001099mscaffold_54303692543044008
Tf0216 ------TP Ciclev10002569mscaffold_52941314329414562
Tf0217 ------TP Ciclev10001508mscaffold_53491079434916593
Tf0218 ------TP Ciclev10014499mscaffold_23148981131497594
Tf0219 Bno homozygous cultivar with minor allele O-----SI076,SI267TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0349.250
Tf0220 ------TP Ciclev10013334mscaffold_62365725623657810
Tf0221 ------SI057,SI225TP Ciclev10025996mscaffold_7490750492882J C_unshiu_00488:mRNA_7.1C_unshiu_004884481348259Ankyrin repeat domain-containing protein, chloroplasticAGI-0281.212
Tf0222 ------TP Ciclev10008882mscaffold_12878216928786731
Tf0223 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0224 OOthers O-----TP Ciclev10011741mscaffold_677853287796808J C_unshiu_00104:mRNA_54.1C_unshiu_00104400959412354Zinc finger CCCH domain-containing protein 32AGI-0499.859
Tf0225 ------TP Ciclev10015893mscaffold_23621196136216858
Tf0226 AAvailable marker O----OTP Ciclev10008836mscaffold_1526813529150J C_unshiu_00129:mRNA_32.1C_unshiu_00129303106311407Exocyst subunit EXO70 family proteinRP-011.100
Tf0227 AAvailable marker O---OOTP Ciclev10031750mscaffold_42166606121671693J C_unshiu_00010:mRNA_30.1C_unshiu_00010183508188843Trihelix transcription factor GT-1AGI-0835.927
Tf0228 ------TP Ciclev10027952mscaffold_860258026031497
Tf0229 ------TP Ciclev10028910mscaffold_82424876724251495
Tf0230 ------SI140TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1
Tf0231 ------TP Ciclev10026262mscaffold_767603116763833
Tf0232 ------SI258,SI261TP Ciclev10001105mscaffold_53706620837070717J C_unshiu_00773:mRNA_3.1C_unshiu_007733135135269Histone-lysine N-methyltransferase ASHR1
Tf0233 ------TP Ciclev10008804mscaffold_167722646775904
Tf0234 ------TP Ciclev10005012mscaffold_92347666123480861
Tf0235 MDisagree by Marco analysis O--O--TP Ciclev10030472mscaffold_41705765817074755J C_unshiu_00225:mRNA_13.1C_unshiu_002257570696678TATA-binding protein-associated factor 172AGI-0743.879
Tf0236 ------TP Ciclev10000034mscaffold_53859515838602400
Tf0237 ------TP Ciclev10004502mscaffold_92939288529395387
Tf0238 ------SI114TP Ciclev10026387mscaffold_7551893553909J C_unshiu_01559:mRNA_5.1C_unshiu_015592403534006Receptor-like protein kinase THESEUS 1
Tf0240 ------SI184TP Ciclev10018505mscaffold_34271899142733040J C_unshiu_00386:mRNA_19.1C_unshiu_00386164396178993Myosin 2
Tf0241 Bno homozygous cultivar with minor allele O-----TP Ciclev10027798mscaffold_82210687222114471J C_unshiu_00481:mRNA_18.1C_unshiu_00481121975128680Zinc finger CCCH domain-containing protein 24AGI-0827.618
Tf0242 ------TP Ciclev10002528mscaffold_53392198433926087
Tf0243 ------SI231TP Ciclev10032893mscaffold_436366673641089J C_unshiu_00236:mRNA_46.1C_unshiu_00236271647281392Nuclear transcription factor Y subunit B-8
Tf0244 ------TP Ciclev10001847mscaffold_53567441635675935
Tf0245 ------SI021TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical protein
Tf0246 ------TP Ciclev10029834mscaffold_857189135719431
Tf0247 ------TP Ciclev10009354mscaffold_12055079220553673
Tf0248 ------TP Ciclev10030929mscaffold_41521652715221460
Tf0249 ------TP Ciclev10023300mscaffold_34579387745798206
Tf0250 AAvailable marker O---OOTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-AAGI-0873.105
Tf0251 ------SI005J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putative
Tf0252 ------TP Ciclev10002005mscaffold_54306809343070554
Tf0253 ------TP Ciclev10016685mscaffold_23142045731425299
Tf0254 Bno homozygous cultivar with minor allele O-----TP Ciclev10010885mscaffold_62391687623939827J C_unshiu_00253:mRNA_3.1C_unshiu_002531464720586Hypothetical proteinAGI-0438.226
Tf0255 ------TP Ciclev10009486mscaffold_12211180822116666
Tf0256 AtAvailable marker O---OOTP Ciclev10021699mscaffold_34342018743422432J C_unshiu_00411:mRNA_13.1C_unshiu_00411116444118424Myb-related protein Myb4AGI-0552.314
Tf0257 ------SI049TP Ciclev10019816mscaffold_34365458743656842J C_unshiu_00805:mRNA_2.1C_unshiu_0080556676759Transcription factor bHLH3
Tf0258 ------SI234TP Ciclev10000508mscaffold_54137251341377106J C_unshiu_00127:mRNA_21.1C_unshiu_00127163658166645BEL1-like homeodomain protein 6
Tf0259 AAvailable marker O---OOTP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0267.666
Tf0260 ------TP Ciclev10026457mscaffold_751738465179864
Tf0261 ------TP Ciclev10012615mscaffold_61641828516421471
Tf0262 ------TP Ciclev10021374mscaffold_353188745321054
Tf0263 ------SI013TP Ciclev10008768mscaffold_163580306359568J C_unshiu_00075:mRNA_22.1C_unshiu_00075227733229211Heat shock transcription factor A7a1
Tf0264 AAvailable marker O---OOTP Ciclev10015873mscaffold_2248256250675J C_unshiu_00109:mRNA_29.1C_unshiu_00109175776179005GANAGI-06103.728
Tf0265 ------SI197TP Ciclev10019232mscaffold_34931810649324231J C_unshiu_00018:mRNA_126.1C_unshiu_00018839780845037Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0266 ------TP Ciclev10030510mscaffold_41845675118473188
Tf0267 AAvailable marker O---OOTP Ciclev10031834mscaffold_41257152612575185J C_unshiu_00847:mRNA_8.1C_unshiu_008474865152296Squamosa promoter-binding-like protein 13AGI-0737.800
Tf0268 AAvailable marker O---OOTP Ciclev10021157mscaffold_31014090410142752J C_unshiu_00149:mRNA_29.1C_unshiu_00149326478328059Transcription factor MYB21AGI-0543.800
Tf0269 ------TP Ciclev10025970mscaffold_722740682279911
Tf0270 ------TP Ciclev10032838mscaffold_4213798215848
Tf0271 Bno homozygous cultivar with minor allele OO-O--TP Ciclev10010976mscaffold_61170795311715646J C_unshiu_01619:mRNA_7.1C_unshiu_016194234750640CCR4-NOT transcription complex subunit 4AGI-0895.613
Tf0273 ------TP Ciclev10015710mscaffold_23359364233595988
Tf0274 ------TP Ciclev10008979mscaffold_12435487724358736
Tf0275 AAvailable marker O---OOTP Ciclev10006256mscaffold_9955176957425J C_unshiu_00249:mRNA_31.1C_unshiu_00249191274194861Transposon protein, putative, Mutator sub-classAGI-0311.501
Tf0276 ------TP Ciclev10004999mscaffold_911692601172055
Tf0277 OOthers O-----TP Ciclev10019282mscaffold_3181596185335
Tf0278 ------TP Ciclev10021157mscaffold_31014090410142752
Tf0279 ------SI073TP Ciclev10019219mscaffold_34903144149035202J C_unshiu_00018:mRNA_78.1C_unshiu_00018562898566588Putative anthocyanin regulatorAGI-0580.539
Tf0280 ------SI158,SI200TP Ciclev10025566mscaffold_734299643433239J C_unshiu_00301:mRNA_24.3C_unshiu_00301159835163045Floral homeotic protein APETALA 2AGI-0554.268
Tf0281 ------TP Ciclev10000850mscaffold_53949595139498826
Tf0282 ------TP Ciclev10021334mscaffold_366549976660313
Tf0284 ------
Tf0285 ------TP Ciclev10000654mscaffold_51267741412680761
Tf0286 DDominant marker O-----TP Ciclev10011556mscaffold_62500158625004619J C_unshiu_01279:mRNA_6.1C_unshiu_012794322246082Dof zinc finger protein DOF5.2AGI-0432.710
Tf0287 ------TP Ciclev10001639mscaffold_53818649538189379
Tf0289 ------SI207TP Ciclev10020486mscaffold_3915818919213J C_unshiu_01070:mRNA_6.1C_unshiu_010704354546732Putative E3 ubiquitin-protein ligase UBR7
Tf0290 AAvailable marker O---OOTP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2AGI-0857.802
Tf0291 ------TP Ciclev10008882mscaffold_12878216928786731
Tf0292 OOthers O-----TP Ciclev10006112mscaffold_93113978931143240J C_unshiu_00003:mRNA_98.2C_unshiu_00003698480711976Protein strawberry notchAGI-0377.793
Tf0293 AAvailable marker OOO--OTP Ciclev10019219mscaffold_34903144149035202J C_unshiu_00018:mRNA_78.1C_unshiu_00018562898566588Putative anthocyanin regulator
Tf0294 AAvailable marker O---OOTP Ciclev10021365mscaffold_347947014799518J C_unshiu_00135:mRNA_58.2C_unshiu_00135398519403121Ureidoglycine aminohydrolase isoform 1AGI-0527.135
Tf0295 ------TP Ciclev10029316mscaffold_820123292014782
Tf0296 ------TP Ciclev10005872mscaffold_953055865310022
Tf0297 ------TP Ciclev10002789mscaffold_54279953842801821
Tf0299 ------TP Ciclev10028534mscaffold_813168791320611
Tf0300 AAvailable marker OO--OOTP Ciclev10022370mscaffold_34386244043863744J C_unshiu_01051:mRNA_10.1C_unshiu_010518341784406Auxin-induced protein IAA4AGI-0554.726
Tf0301 ------SI182TP Ciclev10021374mscaffold_353188745321054J C_unshiu_00442:mRNA_14.1C_unshiu_00442123398125451Homeobox-leucine zipper protein HAT3
Tf0302 ------SI105TP Ciclev10020754mscaffold_34176983341772129No
Tf0303 ------SI082TP Ciclev10030491mscaffold_463251806334300J C_unshiu_00210:mRNA_10.1C_unshiu_002105214860690Putative lysine-specific demethylase ELF6
Tf0304 ------TP Ciclev10000491mscaffold_5953167960232J C_unshiu_00033:mRNA_32.1C_unshiu_00033311804317751Auxin response factorAGI-09113.306
Tf0305 ------TP Ciclev10008366mscaffold_12755489727556656
Tf0306 ------TP Ciclev10005750mscaffold_92605393026055086
Tf0307 Bno homozygous cultivar with minor allele O-----TP Ciclev10009286mscaffold_12539568825397278J C_unshiu_00442:mRNA_24.1C_unshiu_00442209015209831Myb domain protein 5AGI-0123.266
Tf0308 ------TP Ciclev10028926mscaffold_819936591996827
Tf0309 ------SI190TP Ciclev10020466mscaffold_34531401645316651J C_unshiu_00546:mRNA_23.1C_unshiu_00546158416160829TLP domain class transcription factorAGI-0557.948
Tf0310 ------TP Ciclev10031598mscaffold_41968188419685929J C_unshiu_00099:mRNA_27.1C_unshiu_00099233334237357NAC domain-containing protein 8AGI-0754.869
Tf0311 AAvailable marker O---OOTP Ciclev10011596mscaffold_61593201615936176J C_unshiu_00779:mRNA_8.1C_unshiu_007797810581377Auxin transporter-like protein 2AGI-0891.890
Tf0312 ------TP Ciclev10029160mscaffold_82315829223161424
Tf0313 ------TP Ciclev10032572mscaffold_42053347420543182
Tf0314 ------TP Ciclev10012525mscaffold_62126374421265650
Tf0315 AAvailable marker O---OOTP Ciclev10012089mscaffold_61408718114090115J C_unshiu_00287:mRNA_20.1C_unshiu_00287221944222997PhantasticaAGI-0893.657
Tf0316 ------TP Ciclev10028732mscaffold_838942663897671
Tf0317 ------SI145TP Ciclev10021941mscaffold_321068102109266J C_unshiu_00490:mRNA_19.1C_unshiu_00490159122161521Transcription factor bHLH47
Tf0318 AAvailable marker OOO-OOTP Ciclev10031873mscaffold_41375143313754767J C_unshiu_00240:mRNA_28.2C_unshiu_00240282002285335Transcription factor bHLH137AGI-0737.467
Tf0319 ------SI152TP Ciclev10026319mscaffold_768726666877291J C_unshiu_00166:mRNA_10.1C_unshiu_001667878083374Putative PHD finger protein ALFIN-LIKE 4-likeAGI-0244.258
Tf0320 ------SI203TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0745.716
Tf0321 ------SI003TP Ciclev10032283mscaffold_42434164224346244J C_unshiu_00001:mRNA_213.1C_unshiu_0000113581151363266Putative WRKY transcription factor 57
Tf0322 ------TP Ciclev10002191mscaffold_53269955332702689
Tf0323 ------SI030TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1
Tf0324 ------TP Ciclev10002438mscaffold_53998626039987337
Tf0325 OOthers O-----TP Ciclev10029355mscaffold_867004416703748J C_unshiu_02974:mRNA_2.1C_unshiu_029741014213418B-box type zinc finger family proteinAGI-0857.386
Tf0326 AAvailable marker OO-OOOSI085TP Ciclev10024695mscaffold_725015202509737J C_unshiu_02417:mRNA_1.1C_unshiu_02417369211684Histone-lysine N-methyltransferase SUVR5AGI-0269.928
Tf0327 ------TP Ciclev10009213mscaffold_11905629119058412
Tf0328 ------SI039,SI180TP Ciclev10021606mscaffold_325307082533942J C_unshiu_00509:mRNA_27.1C_unshiu_00509178211181426Transcription factor bHLH79
Tf0330 ------SI064,SI139TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1AGI-0613.470
Tf0331 ------TP Ciclev10021868mscaffold_348317514834270
Tf0332 ------SI081TP Ciclev10001976mscaffold_53758683437589255J C_unshiu_00985:mRNA_11.1C_unshiu_009859771299966NAC domain-containing protein 2AGI-0945.548
Tf0333 ------TP Ciclev10012193mscaffold_658867445892919
Tf0334 ------SI034TP Ciclev10007003mscaffold_93098334730984159J C_unshiu_00003:mRNA_76.2C_unshiu_00003557862561962Nuclear transcription factor Y subunit C-9
Tf0335 ------SI014,SI168TP Ciclev10033529mscaffold_424577982458868J C_unshiu_00979:mRNA_19.1C_unshiu_009798539086600C2 domain proteinAGI-0713.855
Tf0336 ------TP Ciclev10029022mscaffold_81057467310578797J C_unshiu_02599:mRNA_1.1C_unshiu_025991036214310NAD(P)-linked oxidoreductase superfamily proteinAGI-0854.304
Tf0337 AAvailable marker O---OOTP Ciclev10031846mscaffold_41963541519637061J C_unshiu_00099:mRNA_23.1C_unshiu_00099186480188051Ap2 erf and b3 domain-containing transcription factor rav2AGI-0754.869
Tf0338 ------TP Ciclev10002202mscaffold_54149232541495372
Tf0339 ------SI019TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1
Tf0340 ------TP Ciclev10003996mscaffold_52712382627127430
Tf0341 ------TP Ciclev10009720mscaffold_120256982028188
Tf0342 ------SI151TP Ciclev10019088mscaffold_316494101655963J C_unshiu_00343:mRNA_23.1C_unshiu_00343203038209504DNA repair helicaseAGI-055.510
Tf0343 AtAvailable marker O---OOTP Ciclev10016587mscaffold_22920468029206501J C_unshiu_00022:mRNA_67.1C_unshiu_00022489282490950High mobility group B protein 7AGI-0644.393
Tf0344 AAvailable marker O---OOTP Ciclev10016433mscaffold_23462423634631123J C_unshiu_00002:mRNA_17.1C_unshiu_00002124392131264Floral homeotic protein AGAMOUSAGI-0624.216
Tf0345 ------SI011TP Ciclev10027918mscaffold_82224812922254029J C_unshiu_00639:mRNA_3.1C_unshiu_006393184237665Auxin response factor
Tf0346 ------TP Ciclev10028485mscaffold_82498753924993295
Tf0347 ------TP Ciclev10020461mscaffold_34742929147431121
Tf0348 ------SI118TP Ciclev10012920mscaffold_61161199411614367J C_unshiu_00236:mRNA_46.1C_unshiu_00236271647281392Nuclear transcription factor Y subunit B-8AGI-0896.565
Tf0349 ------TP Ciclev10033770mscaffold_42057368320575539
Tf0350 OOthers O-----SI132TP Ciclev10019034mscaffold_389147448921411J C_unshiu_00695:mRNA_7.1C_unshiu_006957148377987Acetyl-coenzyme A synthetaseAGI-0543.295
Tf0351 ------SI122TP Ciclev10021622mscaffold_34347209443473220J C_unshiu_00411:mRNA_17.1C_unshiu_00411160316161284Ethylene-responsive transcription factor 1BAGI-0552.655
Tf0352 ------TP Ciclev10022757mscaffold_33290402332906262
Tf0353 MDisagree by Marco analysis O-----SI087TP Ciclev10018691mscaffold_33469666134702240J C_unshiu_00669:mRNA_17.2C_unshiu_00669126539133312Cell division cycle 5-like proteinAGI-0853.069
Tf0354 ------SI070TP Ciclev10021202mscaffold_34870441648708817J C_unshiu_00018:mRNA_33.1C_unshiu_00018219801223933Transcription factor ASG4
Tf0355 ------TP Ciclev10029260mscaffold_860650926068908
Tf0356 ------SI134,SI160TP Ciclev10029063mscaffold_89982891001763J C_unshiu_00041:mRNA_95.3C_unshiu_00041588335591780Basic-leucine zipper (BZIP) transcription factor familyAGI-0883.743
Tf0357 ------SI018TP Ciclev10025390mscaffold_722467322249558J C_unshiu_01055:mRNA_7.1C_unshiu_010556061463050Zinc finger protein JACKDAWAGI-0271.294
Tf0358 ------SI098TP Ciclev10025169mscaffold_720490682051708No
Tf0359 ------TP Ciclev10008628mscaffold_11829859918300295
Tf0360 ------SI112TP Ciclev10000627mscaffold_53866912338672110J C_unshiu_00430:mRNA_12.1C_unshiu_0043098615101120Trihelix transcription factor GT-2AGI-0943.140
Tf0361 ------TP Ciclev10005102mscaffold_93077880330783116
Tf0362 ------SI062TP Ciclev10026199mscaffold_7224443227133J C_unshiu_02579:mRNA_3.1C_unshiu_025791322815002WUSCHEL-related homeobox 13
Tf0363 ------SI002,SI096TP Ciclev10019714mscaffold_34931810649324231J C_unshiu_00018:mRNA_126.1C_unshiu_00018839780845037Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0364 AAvailable marker O---OOTP Ciclev10011266mscaffold_62460650124612654J C_unshiu_00135:mRNA_49.1C_unshiu_00135338118344273FACT complex subunit SSRP1AGI-0437.102
Tf0365 ------TP Ciclev10032012mscaffold_41604632216048971
Tf0366 ------TP Ciclev10015541mscaffold_22689033526894409
Tf0367 ------TP Ciclev10033497mscaffold_41394188013946022
Tf0368 AAvailable marker O---OOSI102TP Ciclev10020717mscaffold_34096377440965744J C_unshiu_00735:mRNA_9.1C_unshiu_007357667378652NAC transcription factor 29AGI-0548.590
Tf0369 ------TP Ciclev10032644mscaffold_41232043912324228
Tf0370 ------TP Ciclev10019820mscaffold_34712109347124518J C_unshiu_00023:mRNA_20.1C_unshiu_00023123134131389Hypothetical proteinAGI-0569.117
Tf0371 ------TP Ciclev10002081mscaffold_52037755220384333J C_unshiu_00913:mRNA_4.1C_unshiu_009133745043326Hypothetical proteinAGI-09102.280
Tf0372 ------TP Ciclev10020156mscaffold_34485833344862278
Tf0373 ------SI088TP Ciclev10011502mscaffold_62122981321233537J C_unshiu_00037:mRNA_60.1C_unshiu_00037387538391239Uridylate kinase, putativeAGI-0461.716
Tf0374 ------TP Ciclev10016964mscaffold_23088646930892663
Tf0375 ------TP Ciclev10022365mscaffold_31303465413036082J C_unshiu_00020:mRNA_62.1C_unshiu_00020527751528816Homeobox leucine zipper proteinAGI-0540.558
Tf0376 AAvailable marker O---OOSI072TP Ciclev10022680mscaffold_385282928529236J C_unshiu_00154:mRNA_1.1C_unshiu_00154983210761CRT binding factor 3AGI-0541.853
Tf0377 ------TP Ciclev10000850mscaffold_53949595139498826
Tf0378 ------TP Ciclev10014909mscaffold_21902838919031661
Tf0379 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0381 ------TP Ciclev10014039mscaffold_21045959310472483
Tf0383 ------TP Ciclev10005062mscaffold_91638385116393557
Tf0384 ------TP Ciclev10005479mscaffold_92316129423166939
Tf0385 ------TP Ciclev10014026mscaffold_290089209021876
Tf0386 AAvailable marker OOO-OOSI044,SI095TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 proteinAGI-0441.367
Tf0387 ------TP Ciclev10015591mscaffold_23564241235646764
Tf0388 O-----TP Ciclev10004533mscaffold_91199328211999324
Tf0389 ------TP Ciclev10008192mscaffold_12860732528610917
Tf0390 ------TP Ciclev10030538mscaffold_41981680019825304
Tf0391 ------TP Ciclev10020053mscaffold_35013383750139049
Tf0392 ------TP Ciclev10001099mscaffold_54303692543044008
Tf0393 AAvailable marker O----OTP Ciclev10002569mscaffold_52941314329414562J C_unshiu_00110:mRNA_25.1C_unshiu_00110149681150624Auxin-responsive protein IAA4RP-0929.347
Tf0394 ------TP Ciclev10001508mscaffold_53491079434916593
Tf0395 ------TP Ciclev10014499mscaffold_23148981131497594
Tf0396 Bno homozygous cultivar with minor allele O-----SI035TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60
Tf0397 ------SI008TP Ciclev10013334mscaffold_62365725623657810J C_unshiu_00098:mRNA_65.1C_unshiu_00098441975442704Ocs element-binding factor 1AGI-0440.646
Tf0398 ------TP Ciclev10025996mscaffold_7490750492882
Tf0399 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0400 ------TP Ciclev10007357mscaffold_1928640936397
Tf0401 ------TP Ciclev10011741mscaffold_677853287796808
Tf0402 ------TP Ciclev10015893mscaffold_23621196136216858J C_unshiu_00077:mRNA_57.1C_unshiu_00077335424340163MYB-CC type transfactorAGI-069.560
Tf0403 ------TP Ciclev10031750mscaffold_42166606121671693
Tf0404 ------TP Ciclev10000454mscaffold_52980845329811460
Tf0405 ------TP Ciclev10027952mscaffold_860258026031497J C_unshiu_00220:mRNA_2.1C_unshiu_002204814853214BEL1-like homeodomain protein 6AGI-0861.643
Tf0406 Bno homozygous cultivar with minor allele O-----TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1AGI-0128.515
Tf0407 ------TP Ciclev10008836mscaffold_1526813529150
Tf0408 ------TP Ciclev10028910mscaffold_82424876724251495
Tf0409 ------TP Ciclev10016959mscaffold_23088646930892663
Tf0410 AAvailable marker O---OOTP Ciclev10032838mscaffold_4213798215848J C_unshiu_00168:mRNA_34.1C_unshiu_00168273522275858Pollen-specific protein SF3AGI-076.146
Tf0411 OOthers O-----TP Ciclev10020263mscaffold_33811119138116265J C_unshiu_00523:mRNA_15.1C_unshiu_00523100297104594Putative transcription factor PosF21AGI-0548.613
Tf0412 ------TP Ciclev10028306mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Tf0414 ------TP Ciclev10007297mscaffold_11288372212897805
Tf0415 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0416 ------TP Ciclev10011201mscaffold_61984088119844299
Tf0419 AAvailable marker OOO--OTP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHY
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Tf0421 ------TP Ciclev10020367mscaffold_33289585432900578
Tf0422 ------TP Ciclev10030538mscaffold_41981680019825304
Tf0423 ------TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0350.361
Tf0424 ------TP Ciclev10031190mscaffold_42390818923912723J C_unshiu_00001:mRNA_134.1C_unshiu_00001904872908655ApyraseAGI-0777.041
Tf0425 ------TP Ciclev10005142mscaffold_922340662238313
Tf0426 ------TP Ciclev10031118mscaffold_41701458217026325
Tf0427 ------TP Ciclev10025925mscaffold_735419243543863
Tf0429 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0431 AAvailable marker O----OTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-A
Tf0432 AAvailable marker O---OOTP Ciclev10016685mscaffold_23142045731425299J C_unshiu_00091:mRNA_39.1C_unshiu_00091370141375026Nuclear transcription factor Y subunit A-7AGI-0638.958
Tf0433 ------TP Ciclev10021699mscaffold_34342018743422432
Tf0434 ------TP Ciclev10026455mscaffold_751738465179562
Tf0436 ------TP Ciclev10021374mscaffold_353188745321054
Tf0437 ------TP Ciclev10004471mscaffold_911480831152025
Tf0438 ------TP Ciclev10000654mscaffold_51267741412680761
Tf0439 ------TP Ciclev10020486mscaffold_3915818919213
Tf0440 ------TP Ciclev10029354mscaffold_81806476118071003
Tf0441 ------TP Ciclev10000491mscaffold_5953167960232
Tf0442 ------TP Ciclev10029160mscaffold_82315829223161424
Tf0443 ------TP Ciclev10012193mscaffold_658867445892919
Tf0444 ------TP Ciclev10029022mscaffold_81057467310578797
Tf0445 ------TP Ciclev10029260mscaffold_860650926068908
Tf0446 ------TP Ciclev10020000mscaffold_34299025142995979
Tf0447 ------TP Ciclev10021000mscaffold_320024272008126
Tf0448 ------TP Ciclev10026715mscaffold_7252320254049
Tf0449 OOthers O-----TP Ciclev10009165mscaffold_12825430728257305J C_unshiu_01997:mRNA_4.1C_unshiu_019973253935330Translation initiation factor IF-3AGI-010.404
Tf0450 ------TP Ciclev10021535mscaffold_35039957150401808
Tf0451 ------TP Ciclev10011164mscaffold_61469451314700102
Tf0452 ------TP Ciclev10014198mscaffold_23174043131747095
Tf0454 AAvailable marker O---OOTP Ciclev10027306mscaffold_71610872316113463J C_unshiu_00371:mRNA_10.1C_unshiu_00371121418127245GATA transcription factorAGI-0221.099
Tf0455 OOthers O-----TP Ciclev10017004mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical proteinAGI-06114.172
Tf0456 ------TP Ciclev10020156mscaffold_34485833344862278
Vs0001 ------
Vs0002 MDisagree by Marco analysis ------SI103,SI115TP Ciclev10000046mscaffold_54118418041190033J C_unshiu_00127:mRNA_46.1C_unshiu_00127341430344325Hypothetical proteinAGI-0936.685KmG-0973.930JtR-0768.221
Vs0003 AAvailable marker ----OOSI077J C_unshiu_00009:mRNA_117.1C_unshiu_00009675718677501Cysteine proteinase RD19aAGI-0935.312KmG-0972.447NAT-0993.467
Vs0004 ------TP Ciclev10021761mscaffold_320786912083111J C_unshiu_00490:mRNA_23.1C_unshiu_00490182148190847Nucleosome assembly proteinKmG-0651.244
Vs0005 OOthers O-----SI022,SI075TP Ciclev10016009mscaffold_23321683933219042J C_unshiu_00002:mRNA_211.1C_unshiu_0000215118091513915Epoxide hydrolase 2AGI-0631.521KmG-0259.329JtR-06S50.000NAT-06S50.000
Vs0006 ULess informative for main cultivars ------TP Ciclev10025343mscaffold_71902429519026021J C_unshiu_00468:mRNA_22.1C_unshiu_00468132124133922Cytochrome P450 78A4AGI-0227.491JtR-0250.216NAT-02S3.328
Vs0007 ------TP Ciclev10025931mscaffold_712071411210820
Vs0008 ------TP Ciclev10032306mscaffold_4947943949892
Vs0009 ------
Vs0010 ------TP Ciclev10012145mscaffold_62103591021038368
Vs0011 ------TP Ciclev10012145mscaffold_62103591021038368
Vs0012 Bno homozygous cultivar with minor allele ------
Vs0013 ------
Vs0014 Bno homozygous cultivar with minor allele ------J C_unshiu_00375:mRNA_10.1C_unshiu_003755051551680Metallothionein
Vs0015 OOthers ------J C_unshiu_00001:mRNA_84.1C_unshiu_00001561308564986Mitochondrial outer membrane protein porin of 34 kDaAGI-09115.452KmG-0934.185JtR-09S15.823
Vs0016 Bno homozygous cultivar with minor allele ------J C_unshiu_02110:mRNA_3.2C_unshiu_021102766028723MetallothioneinAGI-0525.980KmG-0817.483JtR-08
Vs0017 ------TP Ciclev10009470mscaffold_166471586649599
Vs0018 ------TP Ciclev10026149mscaffold_746128874617115
Vt0001 AAvailable marker ----OOTP Ciclev10014290mscaffold_23562493535628855J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0616.327KmG-0668.041
Vt0002 ------TP Ciclev10032270mscaffold_42086875020872170
Vt0003 ------TP Ciclev10027667mscaffold_881536608174407J C_unshiu_00616:mRNA_3.1C_unshiu_006161080818470Hypothetical proteinAGI-0856.724
Vt0004 ------TP Ciclev10005408mscaffold_998058999809222
Vt0005 ------TP Ciclev10001888mscaffold_53644934636452178
Vt0006 ------TP Ciclev10010149mscaffold_12491488524923422
Vt0007 ------TP Ciclev10019734mscaffold_34982190649825730
Vt0008 ------TP Ciclev10019736mscaffold_34925639049259083
Vt0009 ------TP Ciclev10012382mscaffold_62493248124935909J C_unshiu_00135:mRNA_6.1C_unshiu_001352589128913Major intrinsic protein (MIP) family transporterAGI-0438.770KmG-0414.707
Vt0010 ------TP Ciclev10020141mscaffold_34856024548562027
Vt0011 AAvailable marker ----OOTP Ciclev10021162mscaffold_31298441112986574J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0541.306JtR-0537.780
Vt0012 ------TP Ciclev10007708mscaffold_118061791809814
Vt0013 ------TP Ciclev10008981mscaffold_11312328013126173
Vt0014 ------TP Ciclev10029694mscaffold_82110297921105476
Vt0015 ------TP Ciclev10025952mscaffold_724414522443391J C_unshiu_00025:mRNA_49.1C_unshiu_00025381829383760HexosyltransferaseAGI-0270.082KmG-0267.054JtR-0221.082
Vt0016 ------TP Ciclev10011403mscaffold_61797482817979364
Vt0017 ------TP Ciclev10031431mscaffold_42370552323709604
Vt0018 ------TP Ciclev10016206mscaffold_22247120822474774
Vt0019 ------TP Ciclev10002927mscaffold_54191353641914321
Vt0020 ------TP Ciclev10032461mscaffold_419701291972842
Vt0021 ------TP Ciclev10007296mscaffold_120158942023323
Vt0022 ------TP Ciclev10006852mscaffold_92420119624203794
Vt0023 ------TP Ciclev10016079mscaffold_287122368714558
Vt0024 ------TP Ciclev10005069mscaffold_92159347321597037
Vt0025 ------TP Ciclev10025308mscaffold_767646646770188
Vt0026 ------TP Ciclev10024169mscaffold_34469139544694360
Vt0027 ------TP Ciclev10031408mscaffold_4303399306794
Vt0028 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinAGI-0751.998KmG-0744.183JtR-0739.088
Vt0029 ------TP Ciclev10031975mscaffold_424513452454325J C_unshiu_00979:mRNA_17.1C_unshiu_009797901681937GroES-like zinc-binding alcohol dehydrogenase family proteinAGI-0713.238
Vt0030Vt0030.k O-----TP Ciclev10024917mscaffold_71127170511277014J C_unshiu_01240:mRNA_4.1C_unshiu_012402765532960Phospholipase DAGI-0212.615
Vt0031 ------
Vt0032 O-----SI024TP Ciclev10024737mscaffold_71790148717905433J C_unshiu_00382:mRNA_15.1C_unshiu_00382163577167662Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1AGI-0225.601RP-026.081
Vt0033 ------TP Ciclev10016829mscaffold_22369588123697100
Vt0034 ------TP Ciclev10000597mscaffold_53963011139635609
Vt0035 ------TP Ciclev10016383mscaffold_285107128514409
Wy0001 ------TP Ciclev10004473mscaffold_935648773568051
Wy0002 ------TP Ciclev10022129mscaffold_31847296718473951
Wy0003 AAvailable marker O---OOTP Ciclev10001202mscaffold_53718965337192231J C_unshiu_00144:mRNA_30.1C_unshiu_00144215223217733AminotransferaseAGI-0946.823KmG-0952.581NAT-0969.467
Wy0004 ------J C_unshiu_02819:mRNA_2.1C_unshiu_0281927284118CXE carboxylesteraseAGI-0870.463NAT-08265.434
Wy0005 DDominant marker O-----TP Ciclev10019927mscaffold_34833710548339028NoAGI-0583.570KmG-05S122.932
Wy0006 O-----TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1KmG-05S19.072JtR-0519.698NAT-0521.803
Wy0007 ------TP Ciclev10025280mscaffold_71545694815460803
Wy0008 HDisagree on Clementine haploid genotype O-----TP Ciclev10009193mscaffold_192973609299641NoAGI-0157.863KmG-0143.003JtR-01S99.300
Wy0009 ------TP Ciclev10022580mscaffold_34862190948624858
Wy0010 ------TP Ciclev10019848mscaffold_394660719468445
Wy0011 OOthers O-----SI091TP Ciclev10032364mscaffold_42441760224419019J C_unshiu_00001:mRNA_226.1C_unshiu_0000114299431431279Enoyl CoA hydratase/isomeraseAGI-0786.288
Wy0012 O----OTP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorKmG-03211.250JtR-0314.898NAT-0311.970
Wy0013 ------TP Ciclev10021105mscaffold_33822922138232245
Wy0014 ------TP Ciclev10004481mscaffold_972329597238380
Wy0015 O-----SI041TP Ciclev10028465mscaffold_81310125713103161J C_unshiu_02878:mRNA_1.1C_unshiu_02878919910715UDP-glycosyltransferase 73C5AGI-0856.724
Wy0016 ------SI068TP Ciclev10011522mscaffold_61849178918493623J C_unshiu_01309:mRNA_6.1C_unshiu_013092194223382UDP-glycosyltransferase 71B1KmG-0447.990
Wy0017 ------TP Ciclev10001019mscaffold_53855909938562819
Wy0018 AAvailable marker ----OOTP Ciclev10021374mscaffold_353188745321054J C_unshiu_00442:mRNA_14.1C_unshiu_00442123398125451Homeobox-leucine zipper protein HAT3AGI-0529.033KmG-05S20.128JtR-0519.008
Wy0019 ------SI031TP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2
Wy0020 ------SI007TP Ciclev10005394mscaffold_955491955553148J C_unshiu_00164:mRNA_5.1C_unshiu_001641704620923Malate dehydrogenaseAGI-0343.563
Wy0021 ------TP Ciclev10013675mscaffold_670791767087001
Wy0022 ------TP Ciclev10032739mscaffold_42491406824915637
Wy0023 ------SI037TP Ciclev10025834mscaffold_77085573880J C_unshiu_00706:mRNA_12.1C_unshiu_007067610378923Thioredoxin-disulfide reductase
Wy0024 ------TP Ciclev10002554mscaffold_52158103121583751
Wy0025 ------SI004TP Ciclev10032547mscaffold_42443400524435526J C_unshiu_00001:mRNA_229.1C_unshiu_0000114464461447952NAC domain-containing protein 29
Wy0025.2Wy0025.em ------TP Ciclev10032547mscaffold_42443400524435526
Wy0026 HDisagree on Clementine haploid genotype ------TP Ciclev10010857mscaffold_12832134228323314J C_unshiu_02224:mRNA_5.1C_unshiu_022243017631684Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseAGI-0135.518
Wy0027 ------TP Ciclev10011949mscaffold_61889626118902614
Wy0028 AAvailable marker ----OOTP Ciclev10007806mscaffold_12500134125004726J C_unshiu_00150:mRNA_3.1C_unshiu_001501865222079Probable pectinesterase/pectinesterase inhibitor 61AGI-0126.171KmG-01
Wy0029 ------TP Ciclev10012640mscaffold_62114570321148279J C_unshiu_00052:mRNA_26.1C_unshiu_00052161014162179Type II peroxiredoxinAGI-04
Wy0030 AAvailable marker O---OOTP Ciclev10001854mscaffold_53622931036230518J C_unshiu_00619:mRNA_10.1C_unshiu_006198721388404EXORDIUM like 2AGI-0953.205KmG-0944.154JtR-09S63.577NAT-0965.585
Wy0031 ------TP Ciclev10002698mscaffold_54232613542327438
Wy0032 OOthers O---OOTP Ciclev10005365mscaffold_91035708410359834J C_unshiu_00367:mRNA_10.1C_unshiu_00367100255102997Male sterility MS5 family proteinAGI-0346.121KmG-03214.572JtR-03112.840
Wy0033 ------TP Ciclev10011317mscaffold_61670917916712039
Wy0034 ------SI367TP Ciclev10026310mscaffold_722996382302863J C_unshiu_00025:mRNA_32.1C_unshiu_00025269762270443Flavoprotein wrbA
Wy0035 ULess informative for main cultivars O-----TP Ciclev10014857mscaffold_23114884931150616J C_unshiu_00292:mRNA_13.1C_unshiu_00292110620112650FAD-binding Berberine family proteinAGI-0636.863
Wy0036 ------TP Ciclev10004868mscaffold_91711436117116036
Wy0037 ------TP Ciclev10016309mscaffold_22804659228048907
Wy0038 ------TP Ciclev10028313mscaffold_8861284864282
Wy0039 AAvailable marker ----OOTP Ciclev10028965mscaffold_81882426218825514J C_unshiu_00459:mRNA_4.1C_unshiu_004593447534918Hypothetical proteinAGI-0845.276JtR-0816.276
Wy0040 AAvailable marker O----OTP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00001:mRNA_217.1C_unshiu_0000113783781380557Hypothetical proteinKmG-0412.855
Wy0041 ------TP Ciclev10025903mscaffold_712958391297378J C_unshiu_00218:mRNA_18.1C_unshiu_002189307494183GDP-mannose 4,6 dehydratase 2AGI-0275.406
Wy0042Wy0042.k ------TP Ciclev10028268mscaffold_895646989566326
Wy0043Wy0043.k ------
Wy0044Wy0044.k ------TP Ciclev10020328mscaffold_34962166549623875
Wy0044.2 ------TP Ciclev10020328mscaffold_34962166549623875
Wy0044.3 ------TP Ciclev10020328mscaffold_34962166549623875J C_unshiu_00126:mRNA_45.1C_unshiu_00126300225314275Hypothetical proteinRP-0549.102
Wy0045Wy0045.k ------TP Ciclev10028268mscaffold_895646989566326J C_unshiu_02764:mRNA_1.1C_unshiu_0276415292654Geraniol 10-hydroxylase-like proteinAGI-0856.724
Wy0046Wy0046.k ------TP Ciclev10024602mscaffold_353824905385009
Wy0047Wy0047.k ------TP Ciclev10020328mscaffold_34962166549623875
Wy0048Wy0048.k ------TP Ciclev10010999mscaffold_61990023519904192J C_unshiu_00043:mRNA_54.1C_unshiu_00043424252427984Putative receptor protein kinase TMK1AGI-0463.371NAT-0421.157
Wy0049Wy0049.k ------TP Ciclev10015338mscaffold_2290799294122
Wy0050Wy0050.k ------TP Ciclev10005669mscaffold_92855666328560571
Wy0051Wy0051.k ------TP Ciclev10001849mscaffold_53932597639327488
Wy0052Wy0052.k ------
Wy0053Wy0053.k ------TP Ciclev10017466mscaffold_22757962727581411
Wy0054Wy0054.em ------TP Ciclev10018486mscaffold_355851425593506
Wy0055Wy0055.em ------J C_unshiu_00005:mRNA_81.1C_unshiu_00005686926696896NeurochondrinAGI-01118.691
Wy0056Wy0056.em AAvailable marker ----OOTP Ciclev10014198mscaffold_23174043131747095J C_unshiu_00027:mRNA_81.1C_unshiu_00027521555527308Auxin response factorAGI-0636.788
Wy0057Wy0057.em ------TP Ciclev10008812mscaffold_11827081818273015
Wy0058Wy0058.em ------TP Ciclev10016274mscaffold_22914050929143804J C_unshiu_00022:mRNA_58.1C_unshiu_00022424974428249Plastid ribosomal protein L15
Wy0059Wy0059.em ------TP Ciclev10012904mscaffold_685624318564865J C_unshiu_00232:mRNA_33.1C_unshiu_00232292640294683DUF538 family proteinAGI-0891.502
Wy0060Wy0060.em ------TP Ciclev10020776mscaffold_34699874547002683J C_unshiu_00023:mRNA_2.1C_unshiu_00023712911067Pto kinase interactor 1AGI-0214.597
Wy0061Wy0061.em ------
Wy0062Wy0062.em ------TP Ciclev10011305mscaffold_61521496915222324J C_unshiu_00034:mRNA_76.1C_unshiu_00034634791641934Peptidyl-prolyl cis-trans isomerase PASTICCINO1AGI-0278.531
Wy0063Wy0063.em ------TP Ciclev10021336mscaffold_32939509429402560J C_unshiu_00549:mRNA_8.1C_unshiu_005498314990542Splicing regulatory glutamine/lysine-rich protein 1AGI-0133.445
Wy0064Wy0064.em ------TP Ciclev10021336mscaffold_32939509429402560J C_unshiu_00549:mRNA_8.1C_unshiu_005498314990542Splicing regulatory glutamine/lysine-rich protein 1
Wy0065Wy0065.em O-----
Wy0066Wy0066.em ------TP Ciclev10001670mscaffold_54258939242594049
Wy0100 ------TP Ciclev10018814mscaffold_3688264692703