Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Af0001			-	-	-	-	-	-		Ciclev10033102m	scaffold_4	25190682	25192326
Af0002			-	-	-	-	-	-		Ciclev10026803m	scaffold_7	9468245	9468907
Af0003			-	-	-	-	-	-		Ciclev10017107m	scaffold_2	11373565	11374539
Af0004			O	-	-	-	-	-		Ciclev10025125m	scaffold_7	8447414	8453714	C_unshiu_00290:mRNA_10.1	C_unshiu_00290	83615	110154	Hypothetical protein	AGI-02	2.847
Af0005			-	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181
Af0006			-	-	-	-	-	-		Ciclev10001011m	scaffold_5	36883103	36887975
Af0007			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Af0008			-	-	-	-	-	-		Ciclev10017323m	scaffold_2	32749064	32749699
Af0009			-	-	-	-	-	-		Ciclev10024461m	scaffold_3	50406028	50412944
Af0010			-	-	-	-	-	-		Ciclev10004080m	scaffold_5	40297492	40299711
Af0011			-	-	-	-	-	-		Ciclev10025929m	scaffold_7	11357990	11362560
Af0012			-	-	-	-	-	-		Ciclev10006108m	scaffold_9	2458793	2459573
Af0013			-	-	-	-	-	-		Ciclev10023060m	scaffold_3	13416061	13417219
Af0014			-	-	-	-	-	-		Ciclev10023139m	scaffold_3	253879	254627
Af0015			-	-	-	-	-	-		Ciclev10019449m	scaffold_3	44021779	44027536	C_unshiu_00217:mRNA_10.1	C_unshiu_00217	86393	91294	Hypothetical protein	AGI-05	54.268
Af0016			-	-	-	-	-	-		Ciclev10022861m	scaffold_3	25074163	25075916	C_unshiu_00117:mRNA_7.1	C_unshiu_00117	38949	40765	Hypothetical protein	AGI-05	41.306
Af0017			-	-	-	-	-	-		Ciclev10029358m	scaffold_8	313112	317158
Af0018			-	-	-	-	-	-		Ciclev10000947m	scaffold_5	40691801	40694522
Af1003			O	-	-	-	-	-		Ciclev10001093m	scaffold_5	15605852	15610028	C_unshiu_00533:mRNA_20.1	C_unshiu_00533	131430	141111	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	AGI-02	22.436
Af1004			-	-	-	-	-	-		Ciclev10008926m	scaffold_1	24426760	24434342
Af1005			-	-	-	-	-	-		Ciclev10012491m	scaffold_6	20715590	20719704
Af1006			-	-	-	-	-	-		Ciclev10005512m	scaffold_9	24661109	24664797
Af1007			-	-	-	-	-	-		Ciclev10021398m	scaffold_3	12814731	12817148
Af1008			-	-	-	-	-	-		Ciclev10006973m	scaffold_9	2470085	2471703
Af1009			-	-	-	-	-	-		Ciclev10015365m	scaffold_2	35818327	35822366
Af1010			-	-	-	-	-	-		Ciclev10014106m	scaffold_2	31656510	31666206
Af1011			O	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243	C_unshiu_00009:mRNA_53.1	C_unshiu_00009	289462	299397	Hypothetical protein									RP-04	60.491
Af1012			-	-	-	-	-	-		Ciclev10026672m	scaffold_7	16270394	16272027
Af1013			-	-	-	-	-	-		Ciclev10022053m	scaffold_3	48621909	48624876
Af1014			-	-	-	-	-	-		Ciclev10018683m	scaffold_3	43594638	43605172
Af1016			-	-	-	-	-	-		Ciclev10025840m	scaffold_7	2394471	2397293
Af1017			O	-	-	-	-	-		Ciclev10006402m	scaffold_9	22671554	22672639	No					AGI-03	46.274
Af1019			-	-	-	-	-	-		Ciclev10005635m	scaffold_9	192512	196670
Af1021			-	-	-	-	-	-		Ciclev10022113m	scaffold_3	40664635	40665640
Af1022			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Af1023			-	-	-	-	-	-		Ciclev10028042m	scaffold_8	2719654	2725331
Af1024			-	-	-	-	-	-		Ciclev10016735m	scaffold_2	35841859	35844177
Af1025			-	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028
Af1026			O	-	-	-	-	-		Ciclev10016450m	scaffold_2	24690261	24692734	C_unshiu_00136:mRNA_33.1	C_unshiu_00136	278221	280719	Period circadian protein, putative isoform 1									RP-06.1	24.027
Af1027			O	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297
Af1028			O	-	-	-	-	-		Ciclev10000335m	scaffold_5	42113621	42120391
Af1029			-	-	-	-	-	-		Ciclev10022553m	scaffold_3	2110308	2113166
Af1030			-	-	-	-	-	-		Ciclev10026876m	scaffold_7	3930788	3932748
Af1031			O	-	-	-	-	-		Ciclev10025711m	scaffold_7	718488	722516	C_unshiu_00353:mRNA_22.1	C_unshiu_00353	151145	154679	3-dehydroquinate synthase AroB	AGI-02	76.168
Af1032			O	-	-	-	-	-		Ciclev10009868m	scaffold_1	8377489	8379348
Af1033			O	-	-	-	-	-		Ciclev10016063m	scaffold_2	10456899	10459385
Af1034			-	-	-	-	-	-		Ciclev10013228m	scaffold_6	1950121	1950908
Af1035			O	-	-	-	-	-		Ciclev10030982m	scaffold_4	23469184	23472872
Af1036			O	-	-	-	-	-		Ciclev10021080m	scaffold_3	7016831	7019863	C_unshiu_00425:mRNA_11.1	C_unshiu_00425	65596	68473	Replication factor C subunit 2	AGI-05	43.118
Af1037			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1969590	1972842	C_unshiu_00058:mRNA_65.1	C_unshiu_00058	521901	525000	Uroporphyrinogen decarboxylase	AGI-04	50.972
Af1038			-	-	-	-	-	-
Af1039			-	-	-	-	-	-		Ciclev10031458m	scaffold_4	14381144	14384897
Af1040			-	-	-	-	-	-		Ciclev10019364m	scaffold_3	29351854	29354190
Af1041			-	-	-	-	-	-		Ciclev10002311m	scaffold_5	40300306	40304768
Af1042			O	-	-	-	-	-		Ciclev10017429m	scaffold_2	28786444	28788097	No					AGI-06	55.700
Af1043			-	-	-	-	-	-		Ciclev10026060m	scaffold_7	20049936	20052008	C_unshiu_00519:mRNA_19.1	C_unshiu_00519	110187	111261	Ribonucleoside-diphosphate reductase subunit M2	AGI-02	44.231
Af1044			-	-	-	-	-	-		Ciclev10013662m	scaffold_6	16378858	16383103
Af1045			-	-	-	-	-	-		Ciclev10000659m	scaffold_5	9197774	9204364
Af1046			-	-	-	-	-	-		Ciclev10000873m	scaffold_5	39992234	39996269
Af1047			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309	C_unshiu_01252:mRNA_3.1	C_unshiu_01252	60669	66705	NADH dehydrogenase subunit 11	AGI-05	41.306
Af1048			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309
Af1050			-	-	-	-	-	-		Ciclev10002662m	scaffold_5	42879563	42882316
Af1051			O	-	-	-	-	-		Ciclev10000105m	scaffold_5	35093132	35106001
Af1052			O	-	-	-	-	-		Ciclev10004444m	scaffold_9	12808154	12820311	C_unshiu_00508:mRNA_9.1	C_unshiu_00508	40385	58179	Hypothetical protein	AGI-08	56.724
Af1053			O	-	-	-	-	-		Ciclev10014664m	scaffold_2	29206818	29208977
Af1054			-	-	-	-	-	-		Ciclev10005132m	scaffold_9	2033331	2036879
Af1055			-	-	-	-	-	-		Ciclev10001625m	scaffold_5	42297979	42300281
Af1056			-	-	-	-	-	-		Ciclev10015905m	scaffold_2	26595972	26598955	C_unshiu_00262:mRNA_14.1	C_unshiu_00262	84573	87520	Purple acid phosphatase 3	AGI-06	66.320
Af1057			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Af1058			-	-	-	-	-	-		Ciclev10018655m	scaffold_3	23001026	23009675
Af1059			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23066384	23072168	C_unshiu_00038:mRNA_98.1	C_unshiu_00038	554982	560549	Plastidic glucose transporter 4	AGI-04	44.840
Af1060			O	-	-	-	-	-		Ciclev10000400m	scaffold_5	42918371	42923480	C_unshiu_00370:mRNA_16.1	C_unshiu_00370	75283	79772	Tonoplast monosaccharide transporter 2	AGI-09	23.647
Af1061			O	-	-	-	-	-		Ciclev10024969m	scaffold_7	6080410	6084393
Af1062			-	-	-	-	-	-		Ciclev10012766m	scaffold_6	14892939	14897320	C_unshiu_00102:mRNA_47.1	C_unshiu_00102	331172	333886	PRA1 family protein A1	AGI-08	93.624
Af1064			-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Af1065			-	-	-	-	-	-		Ciclev10009538m	scaffold_1	11008759	11012720
Af1066			-	-	-	-	-	-		Ciclev10024951m	scaffold_7	3887010	3890047
Af1067			O	-	-	-	-	-
Af1068			O	-	-	-	-	-		Ciclev10021732m	scaffold_3	40110008	40113420	C_unshiu_00335:mRNA_13.1	C_unshiu_00335	99790	103133	Protein vip1	AGI-05	48.750
Af1069			-	-	-	-	-	-		Ciclev10005528m	scaffold_9	1787121	1788837
Af1070			O	-	-	-	-	-		Ciclev10008140m	scaffold_1	17308566	17311235
Af1071			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Af1072			-	-	-	-	-	-		Ciclev10005792m	scaffold_9	13545137	13548134
Af1073			O	-	-	-	-	-		Ciclev10021041m	scaffold_3	632882	635612
Af1074			-	-	-	-	-	-		Ciclev10015644m	scaffold_2	12308761	12314225
Af1077			-	-	-	-	-	-		Ciclev10019936m	scaffold_3	47876448	47878633
Af1078			-	-	-	-	-	-		Ciclev10007573m	scaffold_1	9428841	9434694
Af1079			-	-	-	-	-	-		Ciclev10009570m	scaffold_1	3255140	3258139
Af1080			-	-	-	-	-	-		Ciclev10001557m	scaffold_5	38314989	38317341
Af1081			-	-	-	-	-	-		Ciclev10010514m	scaffold_1	5650217	5655629
Af1082			-	-	-	-	-	-		Ciclev10021811m	scaffold_3	43869583	43874373
Af1083			-	-	-	-	-	-		Ciclev10025156m	scaffold_7	15505556	15510930
Af1084			-	-	-	-	-	-		Ciclev10008467m	scaffold_1	25716862	25720071	C_unshiu_00066:mRNA_57.1	C_unshiu_00066	369928	382143	Hypothetical protein	AGI-01	24.643
Af1085			-	-	-	-	-	-		Ciclev10001010m	scaffold_5	40691801	40694522
Af1086			-	-	-	-	-	-		Ciclev10031563m	scaffold_4	10510018	10517939	C_unshiu_00028:mRNA_1.2	C_unshiu_00028	4115	12036	AP-2 complex subunit mu	AGI-05	41.306
Af1087			O	-	-	-	-	-		Ciclev10019689m	scaffold_3	24796351	24800588	C_unshiu_00286:mRNA_17.1	C_unshiu_00286	132648	135466	Glycine hydroxymethyltransferase	AGI-05	41.306
Af1088			O	-	-	-	-	-		Ciclev10031611m	scaffold_4	17171114	17174966
Af1089			-	-	-	-	-	-		Ciclev10028589m	scaffold_8	6068944	6075685
Af1090			-	-	-	-	-	-		Ciclev10019200m	scaffold_3	951691	958430
Af1091			O	-	-	-	-	-		Ciclev10021043m	scaffold_3	43316046	43317909	C_unshiu_00411:mRNA_2.1	C_unshiu_00411	11510	13352	Arabinose 5-phosphate isomerase	AGI-05	52.655
Af1092			O	-	-	-	-	-		Ciclev10019279m	scaffold_3	50868096	50873164
Af1093			-	-	-	-	-	-		Ciclev10011263m	scaffold_6	19055518	19058726
Af1094			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein	AGI-01	30.175
Af1095			-	-	-	-	-	-		Ciclev10014502m	scaffold_2	10695424	10700095
Af1096			-	-	-	-	-	-		Ciclev10020597m	scaffold_3	42061488	42063267	C_unshiu_00778:mRNA_10.1	C_unshiu_00778	89741	91509	Cytochrome P450 82A4	AGI-05	51.052
Af1097			-	-	-	-	-	-		Ciclev10014845m	scaffold_2	23829862	23832918
Af1098			-	-	-	-	-	-		Ciclev10028668m	scaffold_8	356241	360220
Af1099			-	-	-	-	-	-		Ciclev10019462m	scaffold_3	6072460	6076187
Af1100			-	-	-	-	-	-		Ciclev10026703m	scaffold_7	10853487	10855215	C_unshiu_00451:mRNA_17.1	C_unshiu_00451	120744	122474	Ran BP2/NZF zinc finger-like superfamily protein isoform 1	AGI-02	13.326
Af1101			-	-	-	-	-	-		Ciclev10022644m	scaffold_3	8843644	8845811
Af1102			-	-	-	-	-	-		Ciclev10020214m	scaffold_3	41627952	41634431
Af1103			-	-	-	-	-	-		Ciclev10018380m	scaffold_2	11393303	11394035
Af1104			-	-	-	-	-	-		Ciclev10015941m	scaffold_2	32155298	32158290
Af1105			-	-	-	-	-	-		Ciclev10002128m	scaffold_5	41177874	41181556
Af1106			-	-	-	-	-	-		Ciclev10031741m	scaffold_4	22131142	22133007
Af1107			-	-	-	-	-	-		Ciclev10009146m	scaffold_1	4606912	4610637
Af1108			-	-	-	-	-	-		Ciclev10009222m	scaffold_1	8046181	8049306
Af1109			-	-	-	-	-	-						C_unshiu_00194:mRNA_16.1	C_unshiu_00194	96415	98120	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AGI-05	48.590
Af1110			-	-	-	-	-	-		Ciclev10028599m	scaffold_8	9656865	9660001	C_unshiu_01425:mRNA_1.1	C_unshiu_01425	333	5522	N-carbamoylputrescine amidase	AGI-08	56.690
Af1111			-	-	-	-	-	-		Ciclev10015086m	scaffold_2	23021193	23023457	C_unshiu_00172:mRNA_31.1	C_unshiu_00172	270783	273047	Glucan endo-1,3-beta-glucosidase 13	AGI-06	83.445
Af1112			-	-	-	-	-	-		Ciclev10001559m	scaffold_5	41496792	41499173
Af1113			-	-	-	-	-	-		Ciclev10028842m	scaffold_8	1376123	1378446
Af1114			-	-	-	-	-	-		Ciclev10022658m	scaffold_3	602713	605468
Af1115			-	-	-	-	-	-		Ciclev10020832m	scaffold_3	20577786	20583404
Af1116			-	-	-	-	-	-		Ciclev10001154m	scaffold_5	6749024	6753178	C_unshiu_00100:mRNA_44.1	C_unshiu_00100	361556	365479	Magnesium transporter MRS2-like protein	AGI-09	85.810
Af1117			-	-	-	-	-	-		Ciclev10028909m	scaffold_8	12563102	12564623
Af1118			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Af1119			-	-	-	-	-	-		Ciclev10012975m	scaffold_6	18723147	18725557
Af1120			-	-	-	-	-	-		Ciclev10008829m	scaffold_1	11232482	11237918
Af1121			-	-	-	-	-	-		Ciclev10025591m	scaffold_7	6127464	6131417
Af1122			-	-	-	-	-	-		Ciclev10033093m	scaffold_4	23871593	23873478
Af1123			-	-	-	-	-	-		Ciclev10009597m	scaffold_1	1687894	1690412
Af1124			-	-	-	-	-	-
Af1126			-	-	-	-	-	-		Ciclev10026538m	scaffold_7	20656099	20658251
Af1127			-	-	-	-	-	-		Ciclev10016337m	scaffold_2	32998560	33003916
Af1128			-	-	-	-	-	-		Ciclev10022649m	scaffold_3	49508288	49511063
Af1129			-	-	-	-	-	-		Ciclev10014531m	scaffold_2	8727346	8730038
Af1130			-	-	-	-	-	-		Ciclev10012011m	scaffold_6	22425094	22426402
Af1131			-	-	-	-	-	-		Ciclev10006197m	scaffold_9	2362829	2365557
Af1132			-	-	-	-	-	-		Ciclev10005061m	scaffold_9	1836250	1840208
Af1133			-	-	-	-	-	-		Ciclev10001729m	scaffold_5	42978752	42983516
Af1134			-	-	-	-	-	-		Ciclev10032388m	scaffold_4	21443803	21447097
Af1135			-	-	-	-	-	-		Ciclev10002795m	scaffold_5	33256354	33257201
Af1136			-	-	-	-	-	-		Ciclev10002356m	scaffold_5	21354054	21361949
Af1137			-	-	-	-	-	-		Ciclev10009474m	scaffold_1	2038681	2041094
Af1138			-	-	-	-	-	-		Ciclev10002375m	scaffold_5	40560109	40563236
Af1139			-	-	-	-	-	-		Ciclev10000272m	scaffold_5	42653994	42661287
Af1140			-	-	-	-	-	-		Ciclev10029224m	scaffold_8	1336907	1339200
Af1141			-	-	-	-	-	-
Af1142			-	-	-	-	-	-		Ciclev10008681m	scaffold_1	487184	489198
Af1143			-	-	-	-	-	-		Ciclev10012182m	scaffold_6	21127984	21132025
Af1145			-	-	-	-	-	-		Ciclev10018013m	scaffold_2	24565857	24567752
Af1146			-	-	-	-	-	-		Ciclev10008189m	scaffold_1	22593671	22599178
Af1147			-	-	-	-	-	-		Ciclev10012837m	scaffold_6	22365433	22367412
Af1148			-	-	-	-	-	-		Ciclev10025238m	scaffold_7	7904865	7908319
Af1149			-	-	-	-	-	-		Ciclev10025360m	scaffold_7	12985954	12989228	C_unshiu_02261:mRNA_2.1	C_unshiu_02261	19156	21966	Glycerol kinase	AGI-05	21.630
Af1150			-	-	-	-	-	-		Ciclev10031943m	scaffold_4	25409035	25412164
Af1151			-	-	-	-	-	-		Ciclev10022903m	scaffold_3	36608197	36611090
Af1153			-	-	-	-	-	-		Ciclev10015940m	scaffold_2	20124170	20127095
Af1154			-	-	-	-	-	-		Ciclev10029070m	scaffold_8	24143988	24146294
Af1155			-	-	-	-	-	-		Ciclev10016372m	scaffold_2	35836830	35839763
Af1156			-	-	-	-	-	-		Ciclev10028887m	scaffold_8	6901630	6904625
Af1157			-	-	-	-	-	-		Ciclev10009325m	scaffold_1	1234555	1235706
Af1158			-	-	-	-	-	-		Ciclev10020023m	scaffold_3	3241862	3247042
Af1159			-	-	-	-	-	-		Ciclev10022925m	scaffold_3	2774465	2775592
Af1160			-	-	-	-	-	-		Ciclev10022213m	scaffold_3	7425353	7428313
Af1161			-	-	-	-	-	-		Ciclev10017060m	scaffold_2	4495596	4498439
Af1162			-	-	-	-	-	-		Ciclev10020996m	scaffold_3	49546712	49548191
Af1163			-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Af1164			-	-	-	-	-	-		Ciclev10019787m	scaffold_3	5981066	5985524
Af1165			-	-	-	-	-	-		Ciclev10021620m	scaffold_3	39331731	39333098
Af1166			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Af1168			-	-	-	-	-	-		Ciclev10022842m	scaffold_3	28389625	28390574
Af1169			-	-	-	-	-	-		Ciclev10006148m	scaffold_9	1844420	1846037
Af1169b			-	-	-	-	-	-		Ciclev10029381m	scaffold_8	22375153	22376849
Af1171			-	-	-	-	-	-		Ciclev10008298m	scaffold_1	275263	280936
Af1172			-	-	-	-	-	-		Ciclev10001677m	scaffold_5	35974954	35979998
Af1173			-	-	-	-	-	-		Ciclev10009205m	scaffold_1	24591598	24593689
Af1174			-	-	-	-	-	-		Ciclev10014963m	scaffold_2	29314176	29319032
Af1175			-	-	-	-	-	-		Ciclev10009729m	scaffold_1	3647539	3651252
Af1176			-	-	-	-	-	-		Ciclev10017100m	scaffold_2	35980341	35983262
Af1177			-	-	-	-	-	-		Ciclev10005989m	scaffold_9	2168387	2170546	C_unshiu_00085:mRNA_13.1	C_unshiu_00085	78341	80308	CASP-like protein 1E1	AGI-03	18.579
Af1178			-	-	-	-	-	-
Af1179			-	-	-	-	-	-		Ciclev10006271m	scaffold_9	29136067	29137517
Af1180			-	-	-	-	-	-		Ciclev10003612m	scaffold_5	27192350	27195683
Af1181			-	-	-	-	-	-		Ciclev10009123m	scaffold_1	8063530	8066056
Af1182			-	-	-	-	-	-		Ciclev10020464m	scaffold_3	42874814	42879300
Af1183			-	-	-	-	-	-		Ciclev10005344m	scaffold_9	280915	283060
Af1184			-	-	-	-	-	-		Ciclev10019895m	scaffold_3	32105774	32108155
Af1185			-	-	-	-	-	-		Ciclev10012743m	scaffold_6	12231037	12235473
Af1186			-	-	-	-	-	-
Af1187			-	-	-	-	-	-		Ciclev10031748m	scaffold_4	24996017	25000652	C_unshiu_00001:mRNA_314.1	C_unshiu_00001	1991693	1996431	Tocopherol O-methyltransferase	AGI-07	85.027
Af1188			-	-	-	-	-	-		Ciclev10021960m	scaffold_3	5606601	5609366
Af1189			-	-	-	-	-	-		Ciclev10005793m	scaffold_9	14837074	14840606
Af1190			-	-	-	-	-	-		Ciclev10023762m	scaffold_3	46510039	46512543
Af1191			-	-	-	-	-	-		Ciclev10028098m	scaffold_8	180851	185769
Af1192			-	-	-	-	-	-		Ciclev10022723m	scaffold_3	37094785	37098257
Af1193			-	-	-	-	-	-		Ciclev10028241m	scaffold_8	23456630	23459052
Af1194			-	-	-	-	-	-		Ciclev10026223m	scaffold_7	8255046	8256442
Af1195			-	-	-	-	-	-		Ciclev10021820m	scaffold_3	42034255	42039591
Af1196			-	-	-	-	-	-		Ciclev10032970m	scaffold_4	21090408	21092841
Af1197			-	-	-	-	-	-		Ciclev10009151m	scaffold_1	16467942	16471056
Af1198			-	-	-	-	-	-		Ciclev10021819m	scaffold_3	2319675	2322962
Af1199			-	-	-	-	-	-		Ciclev10019763m	scaffold_3	49554050	49560198
Af1200			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Af1201			-	-	-	-	-	-		Ciclev10012248m	scaffold_6	16637520	16640347
Af1202			-	-	-	-	-	-		Ciclev10033216m	scaffold_4	15927576	15929918
Af1203			-	-	-	-	-	-		Ciclev10021949m	scaffold_3	40219315	40224503
Af1204			-	-	-	-	-	-		Ciclev10029631m	scaffold_8	24097206	24099101
Af1205			-	-	-	-	-	-		Ciclev10002396m	scaffold_5	34161721	34162652	C_unshiu_00196:mRNA_4.1	C_unshiu_00196	15219	16117	Basic helix-loop-helix DNA-binding superfamily protein, putative	AGI-09	64.754
Af1206			-	-	-	-	-	-		Ciclev10002697m	scaffold_5	42109316	42112542
Af1207			-	-	-	-	-	-		Ciclev10025335m	scaffold_7	15605065	15607345	C_unshiu_00628:mRNA_20.1	C_unshiu_00628	144683	146646	Flavonoid 3'-monooxygenase	AGI-02	21.344
Af1208			-	-	-	-	-	-		Ciclev10029134m	scaffold_8	23036291	23037524	C_unshiu_02220:mRNA_1.1	C_unshiu_02220	11982	13216	Tonoplast intrinsic protein	AGI-08	17.057
Af1209			-	-	-	-	-	-		Ciclev10022439m	scaffold_3	1281119	1281817
Af1210			-	-	-	-	-	-		Ciclev10026807m	scaffold_7	20056475	20058190
Af1211			-	-	-	-	-	-		Ciclev10007095m	scaffold_9	6226731	6229337
Af1212			-	-	-	-	-	-		Ciclev10032370m	scaffold_4	17118916	17121135
Af1213			-	-	-	-	-	-		Ciclev10010027m	scaffold_1	2821922	2823925
Af1214			-	-	-	-	-	-		Ciclev10005447m	scaffold_9	12839345	12844087
Af1218			-	-	-	-	-	-		Ciclev10009894m	scaffold_1	26237405	26239791
Af1219			-	-	-	-	-	-		Ciclev10022271m	scaffold_3	42200299	42203934
Af1220			-	-	-	-	-	-		Ciclev10013088m	scaffold_6	22724682	22726973
Af1221			-	-	-	-	-	-		Ciclev10022216m	scaffold_3	6329133	6332201
Af1222			-	-	-	-	-	-		Ciclev10018015m	scaffold_2	35934589	35935920
Af1223			-	-	-	-	-	-		Ciclev10009839m	scaffold_1	27111412	27114276	C_unshiu_00347:mRNA_8.1	C_unshiu_00347	66555	79401	Flavin-binding kelch domain F box protein	AGI-09	97.668
Af1224			-	-	-	-	-	-		Ciclev10002263m	scaffold_5	9979515	9982669
Af1225			-	-	-	-	-	-		Ciclev10027859m	scaffold_8	1094366	1097096
Af1226			-	-	-	-	-	-
Af1227			-	-	-	-	-	-		Ciclev10022750m	scaffold_3	42672043	42673648
Af1228			-	-	-	-	-	-		Ciclev10026542m	scaffold_7	8317978	8319191
Af1229			-	-	-	-	-	-		Ciclev10016825m	scaffold_2	13441813	13443080
Af1230			-	-	-	-	-	-		Ciclev10026057m	scaffold_7	370952	372493
Af1231			-	-	-	-	-	-		Ciclev10002376m	scaffold_5	12183281	12186007
Af1232			-	-	-	-	-	-		Ciclev10011608m	scaffold_6	20541096	20546049
Af1233			-	-	-	-	-	-		Ciclev10025897m	scaffold_7	20841942	20846077
Af1234			-	-	-	-	-	-		Ciclev10007572m	scaffold_1	19975332	19979144
Af1235			-	-	-	-	-	-		Ciclev10026233m	scaffold_7	17212895	17215557
Af1236			-	-	-	-	-	-		Ciclev10015450m	scaffold_2	26852381	26857537
Af1237			-	-	-	-	-	-		Ciclev10021146m	scaffold_3	1058012	1060668
Af1238			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Af1239			-	-	-	-	-	-
Af1240			-	-	-	-	-	-		Ciclev10011152m	scaffold_6	23748847	23753978
Af1241			-	-	-	-	-	-		Ciclev10008227m	scaffold_1	1401842	1406346
Af1242			-	-	-	-	-	-		Ciclev10019465m	scaffold_3	50417890	50421625
Af1244			-	-	-	-	-	-		Ciclev10006361m	scaffold_9	4448167	4450777
Af1244b			-	-	-	-	-	-		Ciclev10016184m	scaffold_2	27779247	27785501
Af1245			-	-	-	-	-	-		Ciclev10019739m	scaffold_3	48129123	48133714
Af1246			-	-	-	-	-	-		Ciclev10002048m	scaffold_5	28797135	28801282
Af1247			-	-	-	-	-	-		Ciclev10011980m	scaffold_6	20638049	20641557
Af1248			-	-	-	-	-	-		Ciclev10007063m	scaffold_9	1638770	1641073
Af1249			-	-	-	-	-	-		Ciclev10017171m	scaffold_2	33660011	33663665
Af1251			-	-	-	-	-	-		Ciclev10002135m	scaffold_5	29706688	29710388
Af1252			-	-	-	-	-	-		Ciclev10027813m	scaffold_8	24202384	24209439
Af1253			-	-	-	-	-	-		Ciclev10020405m	scaffold_3	3201206	3204377	C_unshiu_00163:mRNA_29.1	C_unshiu_00163	211551	214568	Phosphate/phosphoenolpyruvate translocator	AGI-05	24.709
Af1254			-	-	-	-	-	-		Ciclev10003301m	scaffold_5	36751453	36759896
Af1255			-	-	-	-	-	-		Ciclev10006003m	scaffold_9	28061221	28063450
Af1256			-	-	-	-	-	-		Ciclev10008233m	scaffold_1	940514	942972
Af1257			-	-	-	-	-	-		Ciclev10033061m	scaffold_4	25059045	25061910
Af1258			-	-	-	-	-	-		Ciclev10029223m	scaffold_8	24591409	24594117
Af1259			-	-	-	-	-	-		Ciclev10030701m	scaffold_4	15528851	15538252
Af1260			-	-	-	-	-	-		Ciclev10001188m	scaffold_5	38869666	38875561
Af1261			-	-	-	-	-	-		Ciclev10027978m	scaffold_8	20321003	20329872
Af1262			-	-	-	-	-	-		Ciclev10009571m	scaffold_1	28424576	28427136
Af1263			-	-	-	-	-	-		Ciclev10005448m	scaffold_9	28494348	28496251
Af1264			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Af1265			-	-	-	-	-	-		Ciclev10031646m	scaffold_4	22789104	22792252
Af1266			-	-	-	-	-	-		Ciclev10032367m	scaffold_4	8400378	8404853
Af1267			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Af1268			-	-	-	-	-	-		Ciclev10011546m	scaffold_6	22523213	22529556
Af1269			-	-	-	-	-	-		Ciclev10009375m	scaffold_1	27043124	27045483
Af1270			-	-	-	-	-	-		Ciclev10011405m	scaffold_6	17589895	17593051
Af1271			-	-	-	-	-	-		Ciclev10025653m	scaffold_7	13323583	13328683
Af1272			-	-	-	-	-	-		Ciclev10019689m	scaffold_3	24796351	24800588
Af1273			-	-	-	-	-	-		Ciclev10024624m	scaffold_3	12214029	12215007
Af1274			-	-	-	-	-	-		Ciclev10009370m	scaffold_1	3152548	3153983
Af1275			-	-	-	-	-	-		Ciclev10028274m	scaffold_8	13035174	13037307
Af1276			-	-	-	-	-	-		Ciclev10022100m	scaffold_3	7080222	7081373
Af1277			-	-	-	-	-	-		Ciclev10030804m	scaffold_4	23811511	23814763
Af1278			-	-	-	-	-	-		Ciclev10009508m	scaffold_1	6903804	6908960
Af1279			-	-	-	-	-	-		Ciclev10031302m	scaffold_4	14510787	14516311
Af1281			-	-	-	-	-	-		Ciclev10029683m	scaffold_8	20366637	20367616
Af1282			-	-	-	-	-	-
Af1283			-	-	-	-	-	-		Ciclev10016366m	scaffold_2	29757723	29762309
Af1285			-	-	-	-	-	-		Ciclev10010796m	scaffold_1	12807597	12808725
Af1286			-	-	-	-	-	-
Af1287			-	-	-	-	-	-		Ciclev10022137m	scaffold_3	39601128	39604586
Af1288			-	-	-	-	-	-		Ciclev10016357m	scaffold_2	35803512	35805985
Af1289			-	-	-	-	-	-		Ciclev10001940m	scaffold_5	4289876	4293681
Af1290			-	-	-	-	-	-		Ciclev10029472m	scaffold_8	24413157	24415621
Af1291			-	-	-	-	-	-		Ciclev10026757m	scaffold_7	4779400	4780310
Af1292			-	-	-	-	-	-		Ciclev10026736m	scaffold_7	6677314	6680214
Af1293			-	-	-	-	-	-		Ciclev10014998m	scaffold_2	16597796	16602257
Af1294			-	-	-	-	-	-		Ciclev10018252m	scaffold_2	27774863	27778271
Af1295			-	-	-	-	-	-		Ciclev10030829m	scaffold_4	3468083	3477274
Af1296			-	-	-	-	-	-		Ciclev10031556m	scaffold_4	19133592	19137895
Af1297			-	-	-	-	-	-		Ciclev10013207m	scaffold_6	23311867	23313814
Af1298			-	-	-	-	-	-		Ciclev10005845m	scaffold_9	2037273	2040825
Af1299			-	-	-	-	-	-		Ciclev10017055m	scaffold_2	27638163	27639131
Af1300			-	-	-	-	-	-		Ciclev10008203m	scaffold_1	8539647	8542949
Af1301			-	-	-	-	-	-		Ciclev10025759m	scaffold_7	866845	870030
Af1302			-	-	-	-	-	-		Ciclev10031454m	scaffold_4	14457766	14462726
Af1303			-	-	-	-	-	-		Ciclev10009361m	scaffold_1	22810929	22812161
Af1304			-	-	-	-	-	-		Ciclev10019494m	scaffold_3	2210485	2215202
Af1305			-	-	-	-	-	-		Ciclev10029439m	scaffold_8	19760077	19761961
Af1306			-	-	-	-	-	-		Ciclev10014843m	scaffold_2	28968668	28973736
Af1307			-	-	-	-	-	-		Ciclev10005707m	scaffold_9	5310513	5314498
Af1308			-	-	-	-	-	-		Ciclev10025747m	scaffold_7	13625504	13630800
Af1309			-	-	-	-	-	-		Ciclev10021713m	scaffold_3	50647753	50652010
Af1310			-	-	-	-	-	-		Ciclev10016380m	scaffold_2	14481402	14484929
Af1311			-	-	-	-	-	-		Ciclev10009720m	scaffold_1	2025698	2028188
Af1312			-	-	-	-	-	-		Ciclev10014367m	scaffold_2	29022433	29030537	C_unshiu_00022:mRNA_44.1	C_unshiu_00022	308324	316293	Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1	AGI-06	37.883
Af1313			-	-	-	-	-	-		Ciclev10014748m	scaffold_2	31222299	31225439
Af1314			-	-	-	-	-	-		Ciclev10001751m	scaffold_5	38283419	38284959
Af1315			-	-	-	-	-	-		Ciclev10025598m	scaffold_7	203839	207450
Af1316			-	-	-	-	-	-		Ciclev10006289m	scaffold_9	685220	687072
Af1317			-	-	-	-	-	-		Ciclev10022803m	scaffold_3	35932198	35935023
Af1318			-	-	-	-	-	-		Ciclev10016868m	scaffold_2	12549543	12550712
Af1320			-	-	-	-	-	-		Ciclev10018023m	scaffold_2	34602479	34604518
Af1321			-	-	-	-	-	-		Ciclev10009751m	scaffold_1	16371168	16375666	C_unshiu_00108:mRNA_25.1	C_unshiu_00108	320409	344557	Hypothetical protein	AGI-06	34.500
Af1322			-	-	-	-	-	-		Ciclev10003088m	scaffold_5	41715562	41717774
Af1324			-	-	-	-	-	-		Ciclev10002404m	scaffold_5	38189669	38190638
Af1325			-	-	-	-	-	-		Ciclev10026096m	scaffold_7	6287460	6289468
Af1326			-	-	-	-	-	-		Ciclev10021439m	scaffold_3	43258339	43260615
Af1327			-	-	-	-	-	-		Ciclev10006293m	scaffold_9	29498595	29499368
Af1328			-	-	-	-	-	-		Ciclev10022653m	scaffold_3	39834680	39837971
Af1329			-	-	-	-	-	-
Af1330			-	-	-	-	-	-		Ciclev10032948m	scaffold_4	19927084	19929921
Af1331			-	-	-	-	-	-		Ciclev10002737m	scaffold_5	41386409	41389807
Af1332			-	-	-	-	-	-		Ciclev10013051m	scaffold_6	20834427	20836151	C_unshiu_00052:mRNA_57.1	C_unshiu_00052	455959	457684	60S acidic ribosomal protein	AGI-04
Af1333			-	-	-	-	-	-		Ciclev10012166m	scaffold_6	14281197	14286862
Af1335			-	-	-	-	-	-		Ciclev10016822m	scaffold_2	27549660	27551146
Af1336			-	-	-	-	-	-		Ciclev10012322m	scaffold_6	8621439	8630049
Af1337			-	-	-	-	-	-		Ciclev10024178m	scaffold_3	23419574	23420180
Af1338			-	-	-	-	-	-		Ciclev10004154m	scaffold_9	24666092	24671850
Af1340			-	-	-	-	-	-		Ciclev10015433m	scaffold_2	35470078	35472862
Af1341			-	-	-	-	-	-		Ciclev10002526m	scaffold_5	43186618	43188986
Af1342			-	-	-	-	-	-		Ciclev10020692m	scaffold_3	29292111	29295993
Af1343			-	-	-	-	-	-		Ciclev10006560m	scaffold_9	28035355	28036664
Af1344			-	-	-	-	-	-		Ciclev10006134m	scaffold_9	29408194	29411173
Af1345			-	-	-	-	-	-		Ciclev10013023m	scaffold_6	13082313	13084012	C_unshiu_01022:mRNA_2.1	C_unshiu_01022	8566	10161	Histone H2A	AGI-08	93.624
Af1346			-	-	-	-	-	-		Ciclev10013045m	scaffold_6	13547529	13550344
Af1347			-	-	-	-	-	-		Ciclev10011781m	scaffold_6	24430779	24434240
Af1348			-	-	-	-	-	-		Ciclev10005778m	scaffold_9	21216748	21221111
Af1349			-	-	-	-	-	-		Ciclev10032073m	scaffold_4	3290273	3293928
Af1350			-	-	-	-	-	-		Ciclev10008817m	scaffold_1	25017748	25021583
Af1351			-	-	-	-	-	-		Ciclev10016286m	scaffold_2	34918217	34919258
Af1352			-	-	-	-	-	-		Ciclev10029282m	scaffold_8	11113259	11117344
Af1353			-	-	-	-	-	-		Ciclev10009740m	scaffold_1	14026557	14027565
Af1354			-	-	-	-	-	-		Ciclev10029831m	scaffold_8	21348947	21352692
Af1355			-	-	-	-	-	-
Af1356			-	-	-	-	-	-		Ciclev10009976m	scaffold_1	22837500	22839817
Af1357			-	-	-	-	-	-		Ciclev10019924m	scaffold_3	3650294	3652372
Af1358			-	-	-	-	-	-		Ciclev10004514m	scaffold_9	566506	571956
Af1359			-	-	-	-	-	-		Ciclev10007524m	scaffold_1	25987803	25992258
Af1360			-	-	-	-	-	-		Ciclev10008482m	scaffold_1	3061549	3065503
Af1361			-	-	-	-	-	-		Ciclev10005795m	scaffold_9	28903616	28907377
Af1362			-	-	-	-	-	-		Ciclev10027931m	scaffold_8	2888992	2895645	C_unshiu_00152:mRNA_9.1	C_unshiu_00152	72564	86513	Hypothetical protein	AGI-08	80.366
Af1363			-	-	-	-	-	-		Ciclev10015634m	scaffold_2	10931515	10935724
Af1364			-	-	-	-	-	-		Ciclev10007962m	scaffold_1	26026278	26032641
Af1366			-	-	-	-	-	-		Ciclev10022785m	scaffold_3	42456299	42460637
Af1367			-	-	-	-	-	-		Ciclev10022240m	scaffold_3	3643442	3647377
Af1369			-	-	-	-	-	-		Ciclev10008015m	scaffold_1	2551920	2555129
Af1370			-	-	-	-	-	-		Ciclev10009015m	scaffold_1	8822834	8826308	C_unshiu_00579:mRNA_6.1	C_unshiu_00579	46507	50108	Plasma membrane	AGI-01	56.590
Af1371			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Af1372			-	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305
Af1373			-	-	-	-	-	-		Ciclev10028814m	scaffold_8	1400755	1404988
Af1374			-	-	-	-	-	-		Ciclev10022450m	scaffold_3	39092285	39094629
Af1375			-	-	-	-	-	-		Ciclev10002846m	scaffold_5	36986113	36987382
Af1376			-	-	-	-	-	-		Ciclev10032383m	scaffold_4	428646	432345
Af1377			-	-	-	-	-	-		Ciclev10001143m	scaffold_5	32780339	32783349	C_unshiu_00224:mRNA_50.1	C_unshiu_00224	297837	300694	Seryl-tRNA synthetase (Serin-tRNA ligase)	AGI-09	70.624
Af1378			-	-	-	-	-	-		Ciclev10016040m	scaffold_2	35273688	35277907
Af1379			-	-	-	-	-	-		Ciclev10026357m	scaffold_7	3456105	3460607	C_unshiu_00301:mRNA_21.2	C_unshiu_00301	134429	138770	CBS domain-containing protein CBSX1, chloroplastic	AGI-02	68.467
Af1380			-	-	-	-	-	-		Ciclev10017148m	scaffold_2	34764294	34766390
Af1381			-	-	-	-	-	-		Ciclev10032242m	scaffold_4	24612463	24616531
Af1382			-	-	-	-	-	-		Ciclev10012786m	scaffold_6	24264177	24265636
Af1383			-	-	-	-	-	-		Ciclev10006002m	scaffold_9	4524401	4525971
Af1384			-	-	-	-	-	-
Af1385			-	-	-	-	-	-		Ciclev10002573m	scaffold_5	36106050	36109239
Af1386			-	-	-	-	-	-		Ciclev10028011m	scaffold_8	3117337	3120914
Af1387			-	-	-	-	-	-		Ciclev10032517m	scaffold_4	22676008	22680724
Af1388			-	-	-	-	-	-		Ciclev10000833m	scaffold_5	5309895	5315706
Af1389			-	-	-	-	-	-		Ciclev10020449m	scaffold_3	44565762	44567996
Af1390			-	-	-	-	-	-		Ciclev10021895m	scaffold_3	12254177	12259003
Af1391			-	-	-	-	-	-
Af1392			-	-	-	-	-	-		Ciclev10008930m	scaffold_1	1051155	1052947
Af1395			-	-	-	-	-	-		Ciclev10016067m	scaffold_2	35656845	35659383
Af1396			-	-	-	-	-	-		Ciclev10022545m	scaffold_3	4920662	4923421	C_unshiu_00520:mRNA_16.2	C_unshiu_00520	166824	167867	Ribosomal protein L19 family protein	AGI-05	28.041
Af1398			-	-	-	-	-	-		Ciclev10030393m	scaffold_8	7899376	7902959	C_unshiu_00887:mRNA_6.1	C_unshiu_00887	49120	57547	Hypothetical protein	AGI-08	57.551
Af1399			-	-	-	-	-	-		Ciclev10030527m	scaffold_4	19931958	19937465
Af1400			-	-	-	-	-	-		Ciclev10024198m	scaffold_3	30042140	30047495
Af1401			-	-	-	-	-	-		Ciclev10022652m	scaffold_3	43753763	43756161
Af1402			-	-	-	-	-	-		Ciclev10029042m	scaffold_8	7891925	7895996
Af1402b			-	-	-	-	-	-		Ciclev10007310m	scaffold_1	3941093	3948163
Af1403			-	-	-	-	-	-		Ciclev10002378m	scaffold_5	20818486	20821238
Af1404			-	-	-	-	-	-		Ciclev10014471m	scaffold_2	11418331	11422116
Af1405			-	-	-	-	-	-		Ciclev10032481m	scaffold_4	24503838	24505365	C_unshiu_00001:mRNA_238.1	C_unshiu_00001	1513811	1515209	FH interacting protein 1	AGI-07	83.026
Af1406			-	-	-	-	-	-		Ciclev10009324m	scaffold_1	329071	331103
Af1407			-	-	-	-	-	-		Ciclev10008782m	scaffold_1	28220637	28224080
Af1408			-	-	-	-	-	-		Ciclev10001178m	scaffold_5	41443667	41446709
Af1409			-	-	-	-	-	-		Ciclev10028349m	scaffold_8	1878986	1885505
Af1410			-	-	-	-	-	-		Ciclev10012700m	scaffold_6	25131256	25133522
Af1411			-	-	-	-	-	-		Ciclev10016646m	scaffold_2	23073191	23078049
Af1412			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Af1413			-	-	-	-	-	-		Ciclev10009114m	scaffold_1	4522022	4524821
Af1414			-	-	-	-	-	-		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor	AGI-03	50.895
Af1415			-	-	-	-	-	-		Ciclev10005717m	scaffold_9	2603134	2605405	C_unshiu_00366:mRNA_20.1	C_unshiu_00366	130993	132913	Transmembrane BAX inhibitor motif-containing protein 4	AGI-03	16.667
Af1416			-	-	-	-	-	-		Ciclev10029140m	scaffold_8	3738607	3741747	C_unshiu_00589:mRNA_10.1	C_unshiu_00589	131180	134227	Embryo defective 1273, putative isoform 1	AGI-08	68.834
Af1417			-	-	-	-	-	-
Af1418			-	-	-	-	-	-		Ciclev10017186m	scaffold_2	8060850	8062464
Af1419			-	-	-	-	-	-		Ciclev10000949m	scaffold_5	37529108	37534944
Af1420			-	-	-	-	-	-		Ciclev10032187m	scaffold_4	19762282	19765759
Af1421			-	-	-	-	-	-		Ciclev10005570m	scaffold_9	26047509	26048622
Af1422			-	-	-	-	-	-		Ciclev10002032m	scaffold_5	41609584	41613450
Af1423			-	-	-	-	-	-		Ciclev10028376m	scaffold_8	24832653	24835113
Af1424			-	-	-	-	-	-		Ciclev10008953m	scaffold_1	18688873	18690138	C_unshiu_00137:mRNA_44.1	C_unshiu_00137	354434	355481	CFE protein	AGI-01	43.613
Af1425			-	-	-	-	-	-		Ciclev10028562m	scaffold_8	994687	998018
Af1426			-	-	-	-	-	-		Ciclev10013333m	scaffold_6	20497289	20501732
Af1427			-	-	-	-	-	-		Ciclev10021942m	scaffold_3	36963026	36965935
Af1428			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Af1429			-	-	-	-	-	-		Ciclev10016644m	scaffold_2	390474	395075
Af1430			-	-	-	-	-	-		Ciclev10000887m	scaffold_5	38059021	38064414
Af1431			-	-	-	-	-	-		Ciclev10019463m	scaffold_3	13145188	13150117
Af1432			-	-	-	-	-	-		Ciclev10032069m	scaffold_4	23666784	23669594	C_unshiu_00001:mRNA_103.1	C_unshiu_00001	659252	662036	UDP-galactose/UDP-glucose transporter 5B	AGI-07	72.828
Af1433			-	-	-	-	-	-		Ciclev10001084m	scaffold_5	39480647	39484776
Af1434			-	-	-	-	-	-		Ciclev10002119m	scaffold_5	42348093	42350470
Af1435			-	-	-	-	-	-		Ciclev10026292m	scaffold_7	5747604	5748976
Af1436			-	-	-	-	-	-		Ciclev10014858m	scaffold_2	5975367	5977280
Af1437			-	-	-	-	-	-		Ciclev10002114m	scaffold_5	1474396	1479079	C_unshiu_00060:mRNA_37.1	C_unshiu_00060	309328	313345	Short-chain alcohol dehydrogenase	AGI-09	92.804
Af1438			-	-	-	-	-	-		Ciclev10031620m	scaffold_4	642157	644823
Af1439			-	-	-	-	-	-		Ciclev10003449m	scaffold_5	14888278	14889824
Af1440			-	-	-	-	-	-		Ciclev10014238m	scaffold_2	34817075	34823291
Af1441			-	-	-	-	-	-		Ciclev10015354m	scaffold_2	26435540	26438838
Af1442			-	-	-	-	-	-		Ciclev10032384m	scaffold_4	24610352	24612338
Af1443			-	-	-	-	-	-		Ciclev10011413m	scaffold_6	25048398	25053494	C_unshiu_00009:mRNA_3.1	C_unshiu_00009	15765	28846	Pentatricopeptide repeat-containing family protein	AGI-04	33.808
Af1444			-	-	-	-	-	-		Ciclev10009174m	scaffold_1	3665141	3672863
Af1445			-	-	-	-	-	-		Ciclev10016776m	scaffold_2	32880456	32882923
Af1446			-	-	-	-	-	-		Ciclev10016974m	scaffold_2	30435790	30437278
Af1447			-	-	-	-	-	-		Ciclev10031155m	scaffold_4	22802995	22807340	C_unshiu_00004:mRNA_35.1	C_unshiu_00004	275820	279748	Aldehyde dehydrogenase	AGI-07	70.744
Af1449			-	-	-	-	-	-		Ciclev10006216m	scaffold_9	6697572	6699157
Af1450			-	-	-	-	-	-		Ciclev10014769m	scaffold_2	6840743	6844063
Af1451			-	-	-	-	-	-		Ciclev10005663m	scaffold_9	3961723	3964463
Af1452			-	-	-	-	-	-		Ciclev10018443m	scaffold_3	5518457	5529974	C_unshiu_00900:mRNA_3.1	C_unshiu_00900	20186	30140	Pheromone-processing carboxypeptidase kex1	AGI-05	29.863
Af1453			-	-	-	-	-	-		Ciclev10023068m	scaffold_3	4663211	4664667	C_unshiu_01589:mRNA_7.1	C_unshiu_01589	29063	37936	Hypothetical protein	AGI-05	27.956
Af1454			-	-	-	-	-	-		Ciclev10029330m	scaffold_8	18813106	18814838
Af1455			-	-	-	-	-	-		Ciclev10012934m	scaffold_6	16927888	16930377
Af1456			-	-	-	-	-	-		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28	AGI-03	46.298
Af1457			-	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475
Af1458			-	-	-	-	-	-
Af1459			-	-	-	-	-	-		Ciclev10009503m	scaffold_1	12972605	12977393
Af1460			-	-	-	-	-	-		Ciclev10025995m	scaffold_7	8712253	8715371
Af1461			-	-	-	-	-	-		Ciclev10007728m	scaffold_1	2851521	2854493
Af1462			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658	C_unshiu_00133:mRNA_50.1	C_unshiu_00133	274230	284897	Hypothetical protein	AGI-04	37.527
Af1463			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Af1464			-	-	-	-	-	-		Ciclev10031253m	scaffold_4	3226868	3232418
Af1465			-	-	-	-	-	-		Ciclev10026722m	scaffold_7	8898626	8899984
Af1466			-	-	-	-	-	-		Ciclev10022406m	scaffold_3	2803785	2805325
Af1467			-	-	-	-	-	-		Ciclev10008651m	scaffold_1	24171632	24175378	C_unshiu_00047:mRNA_19.1	C_unshiu_00047	116658	120038	Putative amino acid permease 7	AGI-01	29.784
Af1468			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019
Af1469			-	-	-	-	-	-		Ciclev10028130m	scaffold_8	20779069	20782853
Af1470			-	-	-	-	-	-		Ciclev10023233m	scaffold_3	46380264	46381057	No					AGI-05	62.767
Af1471			-	-	-	-	-	-		Ciclev10022208m	scaffold_3	9747775	9750640
Af1472			-	-	-	-	-	-		Ciclev10026852m	scaffold_7	17420861	17422787
Af1474			-	-	-	-	-	-		Ciclev10031886m	scaffold_4	21243085	21244983
Af1475			-	-	-	-	-	-		Ciclev10012178m	scaffold_6	14868821	14872700
Af1476			-	-	-	-	-	-		Ciclev10009256m	scaffold_1	3862913	3866838
Af1477			-	-	-	-	-	-		Ciclev10016057m	scaffold_2	33561487	33563802
Af1478			-	-	-	-	-	-		Ciclev10009725m	scaffold_1	4534161	4535260
Af1479			-	-	-	-	-	-		Ciclev10002189m	scaffold_5	32699610	32702689
Af1480			-	-	-	-	-	-		Ciclev10026531m	scaffold_7	782313	784526
Af1481			-	-	-	-	-	-		Ciclev10009202m	scaffold_1	1797060	1800274
Af1482			-	-	-	-	-	-		Ciclev10001945m	scaffold_5	36550507	36552800	C_unshiu_00657:mRNA_2.2	C_unshiu_00657	28541	30831	DRE binding transcription factor	AGI-09	49.255
Af1483			-	-	-	-	-	-		Ciclev10026740m	scaffold_7	5523075	5524475
Af1484			-	-	-	-	-	-		Ciclev10023136m	scaffold_3	42882909	42885640
Af1485a			-	-	-	-	-	-		Ciclev10026552m	scaffold_7	1381761	1382875
Af1485b			-	-	-	-	-	-		Ciclev10012181m	scaffold_6	8936705	8942681
Af1486			-	-	-	-	-	-		Ciclev10029576m	scaffold_8	17510926	17513265	C_unshiu_00962:mRNA_1.1	C_unshiu_00962	434	2684	Prefoldin subunit 4	AGI-08	59.562
Af1487			-	-	-	-	-	-		Ciclev10028531m	scaffold_8	18155481	18157658	C_unshiu_00251:mRNA_22.1	C_unshiu_00251	205180	207288	DnaJ	AGI-08	47.330
Af1488			-	-	-	-	-	-		Ciclev10020747m	scaffold_3	4959826	4964659
Af1489			-	-	-	-	-	-		Ciclev10016302m	scaffold_2	36078501	36081245
Af1490			-	-	-	-	-	-		Ciclev10005113m	scaffold_9	4742709	4745030
Af1491a			-	-	-	-	-	-		Ciclev10017207m	scaffold_2	29258052	29260162
Af1491b			-	-	-	-	-	-		Ciclev10029091m	scaffold_8	21777981	21780912
Af1492			-	-	-	-	-	-		Ciclev10031173m	scaffold_4	23365418	23370600
Af1493			-	-	-	-	-	-
Af1494			-	-	-	-	-	-		Ciclev10017510m	scaffold_2	29644507	29646280
Af1495			-	-	-	-	-	-		Ciclev10032113m	scaffold_4	22523092	22528307	C_unshiu_00004:mRNA_77.1	C_unshiu_00004	548746	553542	UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3	AGI-07	69.544
Af1496			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Af1497			-	-	-	-	-	-		Ciclev10018482m	scaffold_3	45704361	45713084
Af1498			-	-	-	-	-	-		Ciclev10006723m	scaffold_9	6766349	6768025	C_unshiu_00307:mRNA_26.2	C_unshiu_00307	212314	218407	Heterogeneous nuclear ribonucleoprotein 1	AGI-03	46.274
Af1499			-	-	-	-	-	-		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein	AGI-04
Af1500			-	-	-	-	-	-		Ciclev10022594m	scaffold_3	16957427	16959735
Af1501			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Af1502			-	-	-	-	-	-		Ciclev10015770m	scaffold_2	23243926	23246266
Af1503			-	-	-	-	-	-		Ciclev10009155m	scaffold_1	27943663	27947071
Af1504			-	-	-	-	-	-		Ciclev10002895m	scaffold_5	2461406	2462911
Af1505			-	-	-	-	-	-		Ciclev10031326m	scaffold_4	1531262	1535758	C_unshiu_00012:mRNA_96.1	C_unshiu_00012	704342	708725	Multiple inositol polyphosphate phosphatase 1	AGI-07	12.283
Af1506			-	-	-	-	-	-		Ciclev10019034m	scaffold_3	8914744	8921411
Af1507a			-	-	-	-	-	-		Ciclev10017265m	scaffold_2	9454517	9456360
Af1507b			-	-	-	-	-	-		Ciclev10025301m	scaffold_7	21098230	21102921
Af1508			-	-	-	-	-	-		Ciclev10011580m	scaffold_6	21983044	21991500	C_unshiu_00079:mRNA_48.1	C_unshiu_00079	328854	336213	Stomatal closure-related actin-binding protein 3	AGI-04	1.342
Af1509			-	-	-	-	-	-		Ciclev10032314m	scaffold_4	23564251	23568956	C_unshiu_00001:mRNA_83.3	C_unshiu_00001	555659	560336	Hypersensitive-induced response protein 1	AGI-07	73.796
Af1510			-	-	-	-	-	-		Ciclev10010950m	scaffold_6	16871274	16876833
Af1511			-	-	-	-	-	-		Ciclev10001383m	scaffold_5	32759553	32763763
Af1512			-	-	-	-	-	-		Ciclev10008994m	scaffold_1	9300782	9304559
Af1513			-	-	-	-	-	-		Ciclev10006024m	scaffold_9	29523786	29526379	C_unshiu_00056:mRNA_24.1	C_unshiu_00056	181282	183151	40S ribosomal protein S10	AGI-03	63.545
Af1514			-	-	-	-	-	-		Ciclev10026347m	scaffold_7	11203967	11205525
Af1515			-	-	-	-	-	-		Ciclev10027760m	scaffold_8	20838053	20844872	C_unshiu_00883:mRNA_4.1	C_unshiu_00883	60978	104832	Argonaute 1	AGI-08	40.438
Af1516			-	-	-	-	-	-		Ciclev10025736m	scaffold_7	15872236	15875783
Af1517			-	-	-	-	-	-		Ciclev10002357m	scaffold_5	31091782	31094489
Af1518			-	-	-	-	-	-		Ciclev10029379m	scaffold_8	21919215	21923184
Af1519			-	-	-	-	-	-		Ciclev10012646m	scaffold_6	23416404	23418629
Af1520			-	-	-	-	-	-		Ciclev10015124m	scaffold_2	7360380	7367946
Af1521			-	-	-	-	-	-		Ciclev10004680m	scaffold_9	9799746	9804461
Af1522			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Af1523			-	-	-	-	-	-		Ciclev10031240m	scaffold_4	6231492	6235447
Af1524			-	-	-	-	-	-		Ciclev10025757m	scaffold_7	9325319	9327565
Af1525			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Af1526			-	-	-	-	-	-		Ciclev10001454m	scaffold_5	38852547	38855263
Af1527			-	-	-	-	-	-		Ciclev10033122m	scaffold_4	17175041	17177917
Af1528			-	-	-	-	-	-		Ciclev10009892m	scaffold_1	1676368	1677018
Af1529			-	-	-	-	-	-		Ciclev10005711m	scaffold_9	21228791	21231253
Af1530			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Af1531			-	-	-	-	-	-		Ciclev10008796m	scaffold_1	4984340	4987674
Af1532			-	-	-	-	-	-		Ciclev10026374m	scaffold_7	3988366	3989679
Af1533			-	-	-	-	-	-		Ciclev10009600m	scaffold_1	22118203	22120791
Af1534			-	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Af1535			-	-	-	-	-	-		Ciclev10007633m	scaffold_1	23814115	23817728
Af1536			-	-	-	-	-	-		Ciclev10021945m	scaffold_3	6113049	6116055
Af1537			-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377
Af1538			-	-	-	-	-	-		Ciclev10002528m	scaffold_5	33921984	33926087
Af1539			-	-	-	-	-	-		Ciclev10016688m	scaffold_2	10097308	10100347
Af1540			-	-	-	-	-	-		Ciclev10006242m	scaffold_9	477388	478920
Af1541			-	-	-	-	-	-		Ciclev10031567m	scaffold_4	10510018	10517939
Af1542			-	-	-	-	-	-		Ciclev10015820m	scaffold_2	10424779	10427904
Af1543			-	-	-	-	-	-		Ciclev10022165m	scaffold_3	42180650	42183843
Af1544			-	-	-	-	-	-		Ciclev10026596m	scaffold_7	2622969	2624754
Af1545			-	-	-	-	-	-		Ciclev10032524m	scaffold_4	2153718	2155194
Af1546			-	-	-	-	-	-		Ciclev10016821m	scaffold_2	12406078	12408794
Af1547			-	-	-	-	-	-		Ciclev10005907m	scaffold_9	3864764	3867933
Af1548			-	-	-	-	-	-		Ciclev10012731m	scaffold_6	25114213	25116604
Af1549			-	-	-	-	-	-		Ciclev10009920m	scaffold_1	2184513	2186967
Af1551			-	-	-	-	-	-		Ciclev10008489m	scaffold_1	6494973	6502196
Af1552			-	-	-	-	-	-		Ciclev10005340m	scaffold_9	30527060	30531535
Af1553			-	-	-	-	-	-		Ciclev10023028m	scaffold_3	45812589	45815067
Af1554			-	-	-	-	-	-		Ciclev10009386m	scaffold_1	23753759	23756754	C_unshiu_00080:mRNA_59.1	C_unshiu_00080	491826	492778	Protein CWC15	AGI-01	28.775
Af1555			-	-	-	-	-	-		Ciclev10029189m	scaffold_8	24502070	24504031
Af1556			-	-	-	-	-	-		Ciclev10026643m	scaffold_7	11107041	11109191	C_unshiu_01501:mRNA_6.1	C_unshiu_01501	57291	59154	Lactoylglutathione lyase/glyoxalase I family protein	AGI-02	11.728
Af1558			-	-	-	-	-	-		Ciclev10005504m	scaffold_9	29608462	29612474
Af1559			-	-	-	-	-	-		Ciclev10005333m	scaffold_9	2211862	2215512
Af1560			-	-	-	-	-	-
Af1561			-	-	-	-	-	-		Ciclev10009643m	scaffold_1	2420324	2423040
Af1562			-	-	-	-	-	-		Ciclev10022384m	scaffold_3	548048	549062
Af1562b			-	-	-	-	-	-		Ciclev10026749m	scaffold_7	1530713	1532413
Af1564			-	-	-	-	-	-		Ciclev10015917m	scaffold_2	26206635	26210648
Af1565			-	-	-	-	-	-		Ciclev10008210m	scaffold_1	21875022	21879839
Af1566			-	-	-	-	-	-		Ciclev10011855m	scaffold_6	15346135	15348332
Af1567			-	-	-	-	-	-		Ciclev10016663m	scaffold_2	22759341	22763218
Af1568			-	-	-	-	-	-						C_unshiu_00591:mRNA_15.1	C_unshiu_00591	108974	112318	Putative elongation factor 2-like	AGI-01	24.954
Af1569			-	-	-	-	-	-		Ciclev10031754m	scaffold_4	23192472	23198396
Af1570			-	-	-	-	-	-		Ciclev10009899m	scaffold_1	4601588	4603705
Af1571			-	-	-	-	-	-		Ciclev10010323m	scaffold_1	24533064	24536628
Af1572			-	-	-	-	-	-		Ciclev10027884m	scaffold_8	22084232	22091205
Af1573			-	-	-	-	-	-		Ciclev10026597m	scaffold_7	11163359	11165487
Af1574			-	-	-	-	-	-		Ciclev10011911m	scaffold_6	14444651	14447199
Af1575			-	-	-	-	-	-		Ciclev10029551m	scaffold_8	17524835	17526697	C_unshiu_02252:mRNA_4.1	C_unshiu_02252	7997	9032	Photosystem II reaction center W protein	AGI-08	56.724
Af1576			-	-	-	-	-	-		Ciclev10018636m	scaffold_3	41566338	41572373	No					AGI-05	47.986
Af1577			-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239
Af1578			-	-	-	-	-	-		Ciclev10023834m	scaffold_3	48016069	48017656
Af1579			-	-	-	-	-	-		Ciclev10006023m	scaffold_9	75348	78181
Af1580			-	-	-	-	-	-		Ciclev10016368m	scaffold_2	35013848	35015439	C_unshiu_00048:mRNA_76.1	C_unshiu_00048	512885	514767	NAD(P)-binding Rossmann-fold superfamily protein isoform 2	AGI-06	20.932
Af1581			-	-	-	-	-	-		Ciclev10024663m	scaffold_3	27092414	27093612
Af1583			-	-	-	-	-	-		Ciclev10006246m	scaffold_9	29549722	29551403
Af1584			-	-	-	-	-	-		Ciclev10026332m	scaffold_7	17424218	17426071
Af1585			-	-	-	-	-	-		Ciclev10026687m	scaffold_7	3462353	3463444
Af1586			-	-	-	-	-	-		Ciclev10005733m	scaffold_9	23119502	23122347	C_unshiu_00148:mRNA_17.1	C_unshiu_00148	145165	147922	Glycoprotein family protein	AGI-03	63.545
Af1587			-	-	-	-	-	-		Ciclev10022920m	scaffold_3	39483387	39486219
Af1588			-	-	-	-	-	-		Ciclev10028841m	scaffold_8	6750503	6754741
Af1589			-	-	-	-	-	-		Ciclev10005524m	scaffold_9	30995129	30999295	C_unshiu_00003:mRNA_80.1	C_unshiu_00003	574672	576940	Peroxisomal 2,4-dienoyl-CoA reductase	AGI-03	77.744
Af1590			-	-	-	-	-	-		Ciclev10017502m	scaffold_2	9348292	9351074
Af1591			-	-	-	-	-	-		Ciclev10030412m	scaffold_8	23674833	23676979
Af1592			-	-	-	-	-	-		Ciclev10021425m	scaffold_3	37597624	37600961
Af1593			-	-	-	-	-	-		Ciclev10015971m	scaffold_2	27738397	27741912	C_unshiu_00745:mRNA_8.1	C_unshiu_00745	82265	85742	Prolactin regulatory element-binding protein, putative	AGI-06	61.501
Af1594			-	-	-	-	-	-		Ciclev10018838m	scaffold_3	4401159	4407506
Af1595			-	-	-	-	-	-		Ciclev10022641m	scaffold_3	9040181	9045543
Af1596			-	-	-	-	-	-		Ciclev10002542m	scaffold_5	37964989	37967950
Af1597			-	-	-	-	-	-		Ciclev10016480m	scaffold_2	13482005	13485923
Af1600			-	-	-	-	-	-		Ciclev10013134m	scaffold_6	22758027	22760875	C_unshiu_00038:mRNA_51.4	C_unshiu_00038	305110	307864	Negatively light-regulated protein	AGI-04	5.122
Af1601			-	-	-	-	-	-		Ciclev10026686m	scaffold_7	4214423	4217517
Af1602			-	-	-	-	-	-		Ciclev10017370m	scaffold_2	13350082	13351899
Af1603			-	-	-	-	-	-		Ciclev10022774m	scaffold_3	42974947	42976794
Af1604			-	-	-	-	-	-		Ciclev10019587m	scaffold_3	47139756	47144124
Af1605			-	-	-	-	-	-		Ciclev10021314m	scaffold_3	26297949	26304739
Af1606			-	-	-	-	-	-		Ciclev10021248m	scaffold_3	24893551	24898675
Af1608			-	-	-	-	-	-		Ciclev10001692m	scaffold_5	42294270	42295612
Af1609			-	-	-	-	-	-		Ciclev10014451m	scaffold_2	24533044	24538470
Af1611			-	-	-	-	-	-		Ciclev10005702m	scaffold_9	22712688	22715627
Af1612			-	-	-	-	-	-		Ciclev10018748m	scaffold_3	30784119	30796076
Af1613			-	-	-	-	-	-
Af1614			-	-	-	-	-	-		Ciclev10030819m	scaffold_4	204633	209475
Af1615			-	-	-	-	-	-		Ciclev10001102m	scaffold_5	38108661	38114412
Af1616			-	-	-	-	-	-		Ciclev10014317m	scaffold_2	26817593	26820324
Af1617			-	-	-	-	-	-		Ciclev10014836m	scaffold_2	434537	439663
Af1618			-	-	-	-	-	-		Ciclev10013090m	scaffold_6	14397047	14399928
Af1619			-	-	-	-	-	-		Ciclev10026784m	scaffold_7	1608634	1610659	C_unshiu_00209:mRNA_18.2	C_unshiu_00209	147009	148975	Thioredoxin h	AGI-02	73.759
Af1620			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Af1621			-	-	-	-	-	-		Ciclev10004420m	scaffold_9	15626737	15638532
Af1622			-	-	-	-	-	-		Ciclev10008520m	scaffold_1	18117264	18119451	C_unshiu_00187:mRNA_23.3	C_unshiu_00187	141733	143877	Protochlorophyllide reductase, chloroplastic	AGI-01	54.754
Af1623			-	-	-	-	-	-		Ciclev10032683m	scaffold_4	612480	615318	C_unshiu_01079:mRNA_2.2	C_unshiu_01079	3136	5814	Thylakoid lumenal 15 kDa protein 1, chloroplastic	AGI-07	7.907
Af1624			-	-	-	-	-	-		Ciclev10007512m	scaffold_1	24924416	24934675
Af1625			-	-	-	-	-	-		Ciclev10019825m	scaffold_3	48944261	48947832
Af1626			-	-	-	-	-	-		Ciclev10020385m	scaffold_3	47202109	47206941
Af1627			-	-	-	-	-	-		Ciclev10012518m	scaffold_6	14194454	14196761
Af1628			-	-	-	-	-	-		Ciclev10001249m	scaffold_5	34809345	34813138
Af1629			-	-	-	-	-	-		Ciclev10012332m	scaffold_6	2969527	2973147	C_unshiu_00060:mRNA_62.1	C_unshiu_00060	539807	543307	Mitochondrial carnitine/acylcarnitine carrier protein CACL	AGI-07	39.420
Af1630			-	-	-	-	-	-		Ciclev10006127m	scaffold_9	4702402	4704790
Af1631			-	-	-	-	-	-		Ciclev10015794m	scaffold_2	34609196	34614203
Af1632			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Af1633			-	-	-	-	-	-		Ciclev10020304m	scaffold_3	3963024	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43	AGI-07	67.201
Af1635			-	-	-	-	-	-		Ciclev10020874m	scaffold_3	18517469	18520307
Af1636			-	-	-	-	-	-		Ciclev10016216m	scaffold_2	6611813	6619116	C_unshiu_00072:mRNA_53.1	C_unshiu_00072	416072	423443	Zinc transporter ZTP29	AGI-06	150.228
Af1637			-	-	-	-	-	-		Ciclev10008007m	scaffold_1	18896164	18901623
Af1638			-	-	-	-	-	-		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin	AGI-03	34.554
Af1639			-	-	-	-	-	-		Ciclev10012116m	scaffold_6	23462487	23466580	C_unshiu_00098:mRNA_36.1	C_unshiu_00098	239683	243712	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1	AGI-04	6.635
Af1640			-	-	-	-	-	-		Ciclev10005272m	scaffold_9	29342369	29345806
Af1641			-	-	-	-	-	-		Ciclev10021239m	scaffold_3	30721842	30725003
Af1642			-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515
Af1643			-	-	-	-	-	-		Ciclev10021001m	scaffold_3	3802387	3805494
Af1644			-	-	-	-	-	-		Ciclev10005467m	scaffold_9	31105158	31108119
Af1645			-	-	-	-	-	-		Ciclev10000427m	scaffold_5	2472805	2477375	C_unshiu_00127:mRNA_11.1	C_unshiu_00127	52207	62775	Class I (E and Q) tRNA synthetase	AGI-09	90.878
Af1646			-	-	-	-	-	-		Ciclev10012239m	scaffold_6	25121919	25125183
Af1647			-	-	-	-	-	-		Ciclev10023615m	scaffold_3	49533318	49539442
Af1648			-	-	-	-	-	-		Ciclev10002024m	scaffold_5	34558362	34564638
Af1650			-	-	-	-	-	-		Ciclev10029248m	scaffold_8	19272551	19276355
Af1651			-	-	-	-	-	-		Ciclev10026767m	scaffold_7	7313006	7315653
Af1653			-	-	-	-	-	-		Ciclev10002255m	scaffold_5	35776946	35779494
Af1654			-	-	-	-	-	-		Ciclev10020789m	scaffold_3	31133566	31137650
Af1655			-	-	-	-	-	-		Ciclev10020140m	scaffold_3	48348138	48351697
Af1656			-	-	-	-	-	-		Ciclev10031396m	scaffold_4	2404353	2407969
Af1657			-	-	-	-	-	-		Ciclev10032070m	scaffold_4	22584852	22588013
Af1658			-	-	-	-	-	-		Ciclev10002760m	scaffold_5	26168594	26171673
Af1659			-	-	-	-	-	-		Ciclev10012047m	scaffold_6	21912438	21917736
Af1660			-	-	-	-	-	-		Ciclev10015583m	scaffold_2	9164804	9166682
Af1662			-	-	-	-	-	-		Ciclev10021522m	scaffold_3	40116213	40124281
Af1663			-	-	-	-	-	-		Ciclev10031595m	scaffold_4	21841321	21845493
Af1666			-	-	-	-	-	-		Ciclev10019037m	scaffold_3	3024295	3028262
Af1667			-	-	-	-	-	-		Ciclev10001644m	scaffold_5	42455994	42459424
Af1668			-	-	-	-	-	-		Ciclev10016828m	scaffold_2	4660424	4661352
Af1669			-	-	-	-	-	-		Ciclev10021541m	scaffold_3	44371081	44373131
Af1670			-	-	-	-	-	-		Ciclev10011668m	scaffold_6	17867902	17874268
Af1671			-	-	-	-	-	-		Ciclev10016129m	scaffold_2	21057080	21059316
Af1672			-	-	-	-	-	-		Ciclev10004406m	scaffold_9	1933927	1940744
Af1673			-	-	-	-	-	-		Ciclev10005691m	scaffold_9	29749063	29751434
Af1674			-	-	-	-	-	-		Ciclev10025184m	scaffold_7	6639833	6644164
Af1675			-	-	-	-	-	-		Ciclev10024649m	scaffold_3	2793365	2795811
Af1676			-	-	-	-	-	-		Ciclev10021429m	scaffold_3	41427221	41432461
Af1677			-	-	-	-	-	-		Ciclev10015358m	scaffold_2	15485437	15488234
Af1678			-	-	-	-	-	-		Ciclev10022810m	scaffold_3	43192762	43194352
Af1679			-	-	-	-	-	-		Ciclev10021896m	scaffold_3	4260126	4262819	C_unshiu_00186:mRNA_34.1	C_unshiu_00186	288266	290432	Adenylate kinase	AGI-05	29.035
Af1680			-	-	-	-	-	-		Ciclev10032474m	scaffold_4	20917509	20920961
Af1681			-	-	-	-	-	-		Ciclev10015215m	scaffold_2	23163673	23168238
Af1682			-	-	-	-	-	-		Ciclev10016706m	scaffold_2	20153460	20156597
Af1683			-	-	-	-	-	-		Ciclev10016632m	scaffold_2	475374	478428
Af1684			-	-	-	-	-	-		Ciclev10022811m	scaffold_3	12901463	12904143
Af1685			-	-	-	-	-	-		Ciclev10023782m	scaffold_3	40086985	40089114	C_unshiu_00335:mRNA_9.1	C_unshiu_00335	76164	77436	Hypothetical protein	AGI-05	56.481
Af1686			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Af1687			-	-	-	-	-	-
Af1688			-	-	-	-	-	-		Ciclev10001114m	scaffold_5	42875803	42879044
Af1689			-	-	-	-	-	-		Ciclev10015519m	scaffold_2	28761649	28766750
Af1690			-	-	-	-	-	-		Ciclev10032651m	scaffold_4	23923757	23925178	C_unshiu_00001:mRNA_137.1	C_unshiu_00001	920379	924128	Hypothetical protein	AGI-07	77.752
Af1691			-	-	-	-	-	-		Ciclev10006090m	scaffold_9	627373	629617
Af1692			-	-	-	-	-	-		Ciclev10014767m	scaffold_2	691427	698055
Af1693			-	-	-	-	-	-		Ciclev10016657m	scaffold_2	32069149	32072079	C_unshiu_00027:mRNA_31.2	C_unshiu_00027	205885	208484	DERLIN-2.2 isoform 1	AGI-06	35.794
Af1694			-	-	-	-	-	-		Ciclev10025863m	scaffold_7	2703580	2705194
Af1695			-	-	-	-	-	-		Ciclev10008653m	scaffold_1	24619126	24621953
Af1697			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Af1698			-	-	-	-	-	-		Ciclev10016574m	scaffold_2	6880111	6883726
Af1699			-	-	-	-	-	-		Ciclev10014381m	scaffold_2	6927081	6932080
Af1700			-	-	-	-	-	-		Ciclev10004322m	scaffold_9	18502293	18505531	C_unshiu_00138:mRNA_34.1	C_unshiu_00138	182719	186200	Putative receptor protein kinase TMK1	AGI-03	54.060
Af1752			-	-	-	-	-	-		Ciclev10009349m	scaffold_1	177116	180417
Af1838			-	-	-	-	-	-		Ciclev10001534m	scaffold_5	6599711	6604334
Af1883			-	-	-	-	-	-		Ciclev10008999m	scaffold_1	25255758	25259340
Af2001			-	-	-	-	-	-		Ciclev10007327m	scaffold_1	25337687	25347002
Af2022			-	-	-	-	-	-		Ciclev10002788m	scaffold_5	9976757	9977512
Af2042			-	-	-	-	-	-		Ciclev10008181m	scaffold_1	3521485	3525524
Af2075			-	-	-	-	-	-		Ciclev10032164m	scaffold_4	22801203	22802540
Af2143			-	-	-	-	-	-		Ciclev10010213m	scaffold_1	149283	154945
Af2250			-	-	-	-	-	-		Ciclev10000615m	scaffold_5	43060442	43066562
Af2318			-	-	-	-	-	-		Ciclev10008753m	scaffold_1	25227978	25233897
Af2344			-	-	-	-	-	-		Ciclev10002506m	scaffold_5	43051579	43053394
Af2392			-	-	-	-	-	-		Ciclev10002611m	scaffold_5	39204025	39206398
Af2525			-	-	-	-	-	-
Af2558			-	-	-	-	-	-		Ciclev10022119m	scaffold_3	49740454	49743754
Af2596			-	-	-	-	-	-		Ciclev10002840m	scaffold_5	38154975	38155769	C_unshiu_00319:mRNA_29.1	C_unshiu_00319	189073	189599	Basic blue protein	AGI-09	57.830
Af2704			-	-	-	-	-	-		Ciclev10012216m	scaffold_6	21132427	21135018
Af2786			-	-	-	-	-	-		Ciclev10029628m	scaffold_8	20547180	20549390
Af2820			-	-	-	-	-	-		Ciclev10000836m	scaffold_5	42437643	42442753
Af2871			-	-	-	-	-	-		Ciclev10019876m	scaffold_3	30066339	30070903
Af2893			-	-	-	-	-	-		Ciclev10025356m	scaffold_7	1739443	1743149	C_unshiu_01334:mRNA_6.1	C_unshiu_01334	25863	29359	Putative mitochondrial chaperone BCS1-B	AGI-02	73.779
Af3016			-	-	-	-	-	-		Ciclev10025718m	scaffold_7	7346031	7350895
Af3017			-	-	-	-	-	-		Ciclev10031492m	scaffold_4	24401841	24406470	C_unshiu_00001:mRNA_224.1	C_unshiu_00001	1415778	1420221	Serine/threonine-protein kinase PBS1	AGI-07	83.217
Af3023			-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative	AGI-02	21.337
Af3039			-	-	-	-	-	-		Ciclev10000497m	scaffold_5	8573281	8583459
Af3114			-	-	-	-	-	-
Af3132			-	-	-	-	-	-		Ciclev10012712m	scaffold_6	3654839	3656896
Af3142			-	-	-	-	-	-		Ciclev10032672m	scaffold_4	9412864	9416686
Af3188			-	-	-	-	-	-		Ciclev10007898m	scaffold_1	448785	452457
Af3215			-	-	-	-	-	-		Ciclev10009264m	scaffold_1	25322078	25323384
Af3218			-	-	-	-	-	-		Ciclev10005768m	scaffold_9	27154799	27158226
Af3244			-	-	-	-	-	-		Ciclev10002793m	scaffold_5	8435123	8435971
Af3288			-	-	-	-	-	-		Ciclev10008476m	scaffold_1	385469	388179
Af3392			-	-	-	-	-	-		Ciclev10013692m	scaffold_6	18248777	18250446
Af3400			-	-	-	-	-	-		Ciclev10002005m	scaffold_5	43068093	43070554
Af3466			-	-	-	-	-	-
Af3471			-	-	-	-	-	-		Ciclev10002308m	scaffold_5	12201836	12206033
Af3599			-	-	-	-	-	-		Ciclev10008985m	scaffold_1	28330810	28332669
Af3712			-	-	-	-	-	-
Af3785			-	-	-	-	-	-		Ciclev10025208m	scaffold_7	5932664	5935568
Af3808			-	-	-	-	-	-		Ciclev10002466m	scaffold_5	176650	180562
Af3822			-	-	-	-	-	-		Ciclev10004695m	scaffold_9	5494254	5497030	C_unshiu_00164:mRNA_13.1	C_unshiu_00164	74059	75936	Phosphate transporter	AGI-03	44.864
Al0001			-	-	-	-	-	-						C_unshiu_00424:mRNA_23.1	C_unshiu_00424	213541	217268	Hypothetical protein	AGI-03	62.228			JtR-031	17.616
Al0003	Al0003.2		-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860	C_unshiu_01778:mRNA_2.1	C_unshiu_01778	27362	28139	Dehydrin COR15	AGI-05	49.499
Al0004			-	-	-	-	-	-		Ciclev10011410m	scaffold_6	24157115	24161063
Al0005			-	-	-	-	-	-		Ciclev10016064m	scaffold_2	32032365	32035492
Al0006			-	-	-	-	-	-		Ciclev10030549m	scaffold_4	2823200	2830227
Al0007			-	-	-	-	-	-
Al0008			-	-	-	-	-	-		Ciclev10001908m	scaffold_5	40317721	40321609	C_unshiu_00054:mRNA_1.1	C_unshiu_00054	5765	8674	26S proteasome non-ATPase regulatory subunit 14									SA-09	50.699
Al0009			-	-	-	-	-	-		Ciclev10004753m	scaffold_9	3688973	3692790
Al0011	Al0010.2		-	-	-	-	-	-		Ciclev10012654m	scaffold_6	10316999	10318328	C_unshiu_00806:mRNA_1.2	C_unshiu_00806	21305	22892	Polyubiquitin	AGI-03	46.768
Al0012			-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0013	Al0012.2		-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0014			O	-	-	-	-	-	SI058,SI153,SI312	Ciclev10008225m	scaffold_1	1070373	1072218	C_unshiu_00005:mRNA_43.1	C_unshiu_00005	281165	283012	CBL-interacting serine/threonine-protein kinase 20	AGI-01	97.525							RP-01	3.295
Al0015			-	-	-	-	-	-		Ciclev10033914m	scaffold_4	25071431	25077010
Al0016			-	-	-	-	-	-		Ciclev10002413m	scaffold_5	2189584	2190474
Al0017			-	-	-	-	-	-
Al0018			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin									RP-08	23.447
Al0019			-	-	-	-	-	-		Ciclev10012798m	scaffold_6	11739634	11741636
Al0020		OOthers	-	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase			KmG-04
Al0021			-	-	-	-	-	-		Ciclev10028327m	scaffold_8	5692075	5697304
Al0022			-	-	-	-	-	-		Ciclev10011465m	scaffold_6	25364317	25368608	C_unshiu_00009:mRNA_62.1	C_unshiu_00009	346583	350755	Mitochondrial-processing peptidase subunit alpha									SA-09	42.503
Al0023			-	-	-	-	-	-		Ciclev10014721m	scaffold_2	27479907	27486732
Al0024.2			-	-	-	-	-	-		Ciclev10020911m	scaffold_3	37863407	37865625
Al0025			-	-	-	-	-	-		Ciclev10020434m	scaffold_3	48584455	48588112
Al0027			-	-	-	-	-	-		Ciclev10009909m	scaffold_1	24787600	24788444
Al0028			-	-	-	-	-	-		Ciclev10016123m	scaffold_2	11604956	11606340	C_unshiu_00957:mRNA_11.1	C_unshiu_00957	38508	39910	Xyloglucan endotransglucosylase/hydrolase protein A									RP-06.1	28.573
Al0029		Bno homozygous cultivar with minor allele	O	-	-	-	-	-						C_unshiu_00305:mRNA_10.1	C_unshiu_00305	69938	73026	Basic helix-loop-helix transcription factor	AGI-01	37.357			JtR-01S	50.000
Al0030			-	-	-	-	-	-		Ciclev10032368m	scaffold_4	18423063	18426424
Al0031			-	-	-	-	-	-		Ciclev10000645m	scaffold_5	13531937	13535930
Al0032			O	-	-	-	-	-		Ciclev10020029m	scaffold_3	50841051	50845732
Al0034			-	-	-	-	-	-		Ciclev10032830m	scaffold_4	17944545	17945441
Al0035			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Al0036			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Al0037			-	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0037.2	Al0037.k		O	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0038			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Al0039			-	-	-	-	-	-						C_unshiu_00018:mRNA_107.1	C_unshiu_00018	723553	725648	Bifunctional protein FolD	AGI-05	95.305
Al0201		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10014752m	scaffold_2	32780830	32782885	C_unshiu_00153:mRNA_49.1	C_unshiu_00153	346248	348256	Armadillo/beta-catenin-like repeat family protein, expressed
Al0202			-	-	-	-	-	-		Ciclev10005495m	scaffold_9	12740846	12745213
Al0203			-	-	-	-	-	-		Ciclev10000021m	scaffold_5	39593309	39602756
Al0204			-	-	-	-	-	-		Ciclev10008298m	scaffold_1	275263	280936	C_unshiu_00003:mRNA_150.2	C_unshiu_00003	1127884	1133567	Myosin heavy chain-like protein					JtR-09S	5.527
Al0205			-	-	-	-	-	-		Ciclev10028714m	scaffold_8	324145	327011
Al0206		AAvailable marker	-	-	-	-	O	O		Ciclev10032727m	scaffold_4	12309480	12311438	C_unshiu_00365:mRNA_26.1	C_unshiu_00365	192643	194502	NADPH-dependent codeinone reductase-like protein	AGI-07	38.565			JtR-07	52.611			RP-07	29.935
Al0207		OOthers	-	-	-	-	-	-		Ciclev10020027m	scaffold_3	4366802	4370111	C_unshiu_00186:mRNA_18.1	C_unshiu_00186	178635	181547	SNF1-related protein kinase regulatory subunit gamma-1	AGI-09	84.537			JtR-09S	9.929
Al0208			O	-	-	-	-	-		Ciclev10001155m	scaffold_5	40597272	40598741
Al0209		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295	C_unshiu_00548:mRNA_21.1	C_unshiu_00548	168151	169460	Hypothetical protein			KmG-01	37.230	JtR-01S	88.382
Al0210		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382	C_unshiu_00166:mRNA_28.1	C_unshiu_00166	205256	208771	Eukaryotic initiation factor 4A-10			KmG-02	34.998	JtR-02	15.126
Al0212			O	-	-	-	-	-		Ciclev10026128m	scaffold_7	5258045	5259521	C_unshiu_00288:mRNA_19.1	C_unshiu_00288	142758	144183	Mitochondrial uncoupling protein 3			KmG-02	43.821	JtR-02	30.507			RP-08
Al0213			-	-	-	-	-	-
Al0215		OOthers	-	-	-	-	-	-		Ciclev10007304m	scaffold_1	21918726	21922966	C_unshiu_00595:mRNA_18.1	C_unshiu_00595	85575	88636	Disease resistance protein	AGI-01	38.255
Al0216			-	-	-	-	-	-		Ciclev10007632m	scaffold_1	7359982	7369305
Al0217		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI350	Ciclev10022061m	scaffold_3	1203357	1206483	No							KmG-05S		JtR-05	25.182
Al0218.2			-	-	-	-	-	-		Ciclev10022061m	scaffold_3	1203357	1206483
Al0219			-	-	-	-	-	-		Ciclev10028236m	scaffold_8	793820	798369
Al0220			-	-	-	-	-	-		Ciclev10008097m	scaffold_1	3683537	3688814
Al0221			-	-	-	-	-	-
Al0222			-	-	-	-	-	-		Ciclev10015548m	scaffold_2	30607996	30610863
Al0223			-	-	-	-	-	-		Ciclev10011771m	scaffold_6	17438270	17440122	C_unshiu_00008:mRNA_127.1	C_unshiu_00008	890026	891371	CBL-interacting serine/threonine-protein kinase 11									RP-04	17.965
Al0224		AAvailable marker	-	O	-	-	O	O		Ciclev10015872m	scaffold_2	26630154	26632900	C_unshiu_00262:mRNA_19.1	C_unshiu_00262	115955	118351	Probable xyloglucan endotransglucosylase/hydrolase protein 27	AGI-06	67.116	KmG-06	17.100	JtR-06S	3.805	NAT-06S	8.025	RP-06.1	28.576
Al0225			-	-	-	-	-	-		Ciclev10001539m	scaffold_5	41093725	41097411	C_unshiu_01543:mRNA_6.1	C_unshiu_01543	34106	35343	DNA glycosylase superfamily protein			KmG-01	9.277
Al0226			-	-	-	-	-	-		Ciclev10012002m	scaffold_6	2571941	2573984
Al0227			-	-	-	-	-	-		Ciclev10001654m	scaffold_5	42217935	42222257
Al0228			-	-	-	-	-	-		Ciclev10009018m	scaffold_1	26206063	26208427	C_unshiu_00315:mRNA_25.1	C_unshiu_00315	212819	220361	Serine/threonine-protein kinase HT1					JtR-034	7.115
Al0229			-	-	-	-	-	-		Ciclev10018463m	scaffold_3	49675354	49684423
Al0230			-	-	-	-	-	-
Al0231			-	-	-	-	-	-		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof									RP-06.1	7.272
Al0232			-	-	-	-	-	-		Ciclev10026186m	scaffold_7	4997089	4999255
Al0234		OOthers	-	-	-	-	-	-		Ciclev10005909m	scaffold_9	1372972	1374927	C_unshiu_00369:mRNA_20.1	C_unshiu_00369	74034	74546	Ribosomal protein L19			KmG-031	6.974			NAT-03	47.094	RP-03	3.219
Al0235			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926
Al0236			-	-	-	-	-	-		Ciclev10014723m	scaffold_2	32806565	32812384
Al0237			-	-	-	-	-	-		Ciclev10026739m	scaffold_7	5523075	5524475
Al0238			-	-	-	-	-	-		Ciclev10017077m	scaffold_2	8494369	8496454
Al0239		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative
Al0240		AAvailable marker	-	-	-	-	O	O		Ciclev10028497m	scaffold_8	8033465	8038415	C_unshiu_00682:mRNA_9.1	C_unshiu_00682	59786	63447	Hypothetical protein	AGI-08	53.867
Al0241			-	-	-	-	-	-		Ciclev10012288m	scaffold_6	17857849	17860063
Al0242			-	-	-	-	-	-		Ciclev10032030m	scaffold_4	3437577	3441367
Al0243			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Al0244			-	-	-	-	-	-		Ciclev10015497m	scaffold_2	9849133	9852098
Al0245			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839
Al0246			-	-	-	-	-	-		Ciclev10019351m	scaffold_3	44215333	44220917
Al0247		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10029281m	scaffold_8	2227827	2230752	C_unshiu_00024:mRNA_15.1	C_unshiu_00024	104182	106823	Somatic embryogenesis receptor kinase 1	AGI-08	77.316	KmG-08	91.101			NAT-082	73.850
Al0248			-	-	-	-	-	-		Ciclev10028483m	scaffold_8	19779795	19784134
Al0249			-	-	-	-	-	-		Ciclev10004782m	scaffold_9	30490331	30496586
Al0250			-	-	-	-	-	-		Ciclev10031445m	scaffold_4	24770754	24773948
Al0251			-	-	-	-	-	-		Ciclev10021340m	scaffold_3	6695171	6697430
Al0252			-	-	-	-	-	-		Ciclev10028251m	scaffold_8	24689989	24692884
Al0256			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Al0257	Al0257.k		-	-	-	-	-	-		Ciclev10008444m	scaffold_1	22407412	22409529
Al0301			-	-	-	-	-	-		Ciclev10022576m	scaffold_3	45906879	45907641
Al0302		AAvailable marker	-	O	-	-	O	O	SI090,SI311	Ciclev10004372m	scaffold_9	25073693	25080376	C_unshiu_00119:mRNA_33.1	C_unshiu_00119	346131	352710	Putative seed imbibition protein	AGI-03	48.375	KmG-032	18.339	JtR-033		NAT-03	3.773	RP-03	36.113
Al0303			-	-	-	-	-	-		Ciclev10029291m	scaffold_8	24431064	24433341
Al0304		MDisagree by Marco analysis	-	-	-	-	-	-	SI259,SI293	Ciclev10013536m	scaffold_6	22616979	22619271	C_unshiu_00038:mRNA_27.1	C_unshiu_00038	174815	175255	Nutrient reservoir, putative	AGI-04	46.361	KmG-04	16.744			NAT-04		RP-04	54.617
Al0305			-	-	-	-	-	-		Ciclev10021551m	scaffold_3	47200055	47201893
Al0306		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI029	Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin					JtR-05	23.944
Al0307	Al0307.2		-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222
Al0308			-	-	-	-	-	-	SI045	Ciclev10028262m	scaffold_8	24521116	24524868	C_unshiu_00021:mRNA_97.1	C_unshiu_00021	630527	634212	NAD(P)H dehydrogenase B2	AGI-05	56.788
Al0309		AAvailable marker	O	-	-	-	-	O		Ciclev10022019m	scaffold_3	44900059	44900865	C_unshiu_00069:mRNA_47.1	C_unshiu_00069	301188	317479	Hypothetical protein			KmG-05S	73.967	JtR-05	38.749			RP-05	86.332
Al0310	Al0309.2		-	-	-	-	-	-		Ciclev10022019m	scaffold_3	44900059	44900865
Al0311			-	-	-	-	-	-		Ciclev10020637m	scaffold_3	5456336	5459361
Al0312			-	-	-	-	-	-		Ciclev10021037m	scaffold_3	4144939	4148359
Al0313		AAvailable marker	O	-	-	-	O	O		Ciclev10011272m	scaffold_6	23966039	23969583	C_unshiu_00133:mRNA_4.2	C_unshiu_00133	22485	26003	Putative phosphatidylinositol 4-kinase type 2-beta	AGI-04	38.152	KmG-04	9.748
Al0314			-	-	-	-	-	-		Ciclev10009591m	scaffold_1	2574769	2577568
Al0315			-	-	-	-	-	-		Ciclev10028656m	scaffold_8	4905341	4909930
Al0316			O	-	-	-	-	-		Ciclev10021599m	scaffold_3	40918148	40922656
Al0317			-	-	-	-	-	-		Ciclev10021392m	scaffold_3	3006218	3008357	C_unshiu_00092:mRNA_60.1	C_unshiu_00092	425854	427887	CASP-like protein 4A2			KmG-05S	16.871	JtR-05	9.525
Al0318	Al0318.2	AAvailable marker	-	-	-	-	-	O		Ciclev10021392m	scaffold_3	3006218	3008357
Al0319		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10022720m	scaffold_3	43447942	43449920	C_unshiu_00411:mRNA_15.1	C_unshiu_00411	140821	145311	Actin-depolymerizing factor 2	AGI-03	46.274	KmG-05S	65.273	JtR-05	42.339			RP-05	72.912
Al0320			-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121	C_unshiu_01206:mRNA_1.1	C_unshiu_01206	4346	5819	Phosphoenolpyruvate carboxylase family protein					JtR-05	23.890
Al0320.2	Al0320.em	AAvailable marker	-	-	-	-	-	O		Ciclev10020878m	scaffold_3	541575	543121	C_unshiu_01206:mRNA_1.1	C_unshiu_01206	4346	5819	Phosphoenolpyruvate carboxylase family protein					JtR-05	23.890
Al0321.2		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121
Al0322			-	-	-	-	-	-		Ciclev10002194m	scaffold_5	34801352	34804440
Al0323		OOthers	-	-	-	-	-	-		Ciclev10012875m	scaffold_6	18188139	18189060
Al0324		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029315m	scaffold_8	20424287	20425903	C_unshiu_00320:mRNA_1.2	C_unshiu_00320	12758	14314	Hypothetical protein	AGI-08	41.127					NAT-082	31.019	RP-08	17.081
Al0325			-	-	-	-	-	-
Al0326		AAvailable marker	-	-	-	O	O	-	SI065,SI344	Ciclev10022558m	scaffold_3	6409311	6411254	C_unshiu_00443:mRNA_7.1	C_unshiu_00443	62532	64193	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-05	42.609	KmG-05S	32.841	JtR-05	16.025			RP-05	27.235
Al0327	Al0326.2		-	-	-	-	-	-		Ciclev10022558m	scaffold_3	6409311	6411254
Al0328			-	-	-	-	-	-		Ciclev10006155m	scaffold_9	29952005	29956306
Al0329		AAvailable marker	O	-	-	-	O	O	SI185	Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.162	KmG-02	11.218	JtR-02	7.174	NAT-02S	5.552	RP-02	8.191
Al0330			-	-	-	-	-	-		Ciclev10009377m	scaffold_1	7455492	7457451
Al0331		AAvailable marker	-	-	-	-	-	O		Ciclev10033190m	scaffold_4	8406632	8407188	C_unshiu_00111:mRNA_9.1	C_unshiu_00111	83531	84087	Hypothetical protein			KmG-09	9.593	JtR-07	52.611			RP-07	19.079
Al0332			-	-	-	-	-	-		Ciclev10032086m	scaffold_4	14895728	14896991
Al0333			-	-	-	-	-	-		Ciclev10004130m	scaffold_9	3954507	3961401
Al0334			-	-	-	-	-	-		Ciclev10008488m	scaffold_1	18113949	18117209
Al0335			-	-	-	-	-	-		Ciclev10021844m	scaffold_3	6131214	6135849
Al0336			-	-	-	-	-	-		Ciclev10001109m	scaffold_5	35917384	35925361
Al0337			-	-	-	-	-	-		Ciclev10025556m	scaffold_7	6437406	6440864
Al0401		OOthers	O	-	-	-	-	-		Ciclev10025346m	scaffold_7	13180567	13191638	C_unshiu_01698:mRNA_6.1	C_unshiu_01698	39336	40206	Hypothetical protein			KmG-02	26.204	JtR-02	-6.043	NAT-02S	22.960
Al0402		AAvailable marker	O	-	-	-	O	O						C_unshiu_00008:mRNA_88.1	C_unshiu_00008	564906	567158	Peptide upstream ORF protein, putative	AGI-08	81.190	KmG-04	44.163			NAT-04	28.388
Al0403			-	-	-	-	-	-		Ciclev10007559m	scaffold_1	26802787	26810465
Al0404			-	-	-	-	-	-		Ciclev10025902m	scaffold_7	4015735	4020920
Al0405			-	-	-	-	-	-		Ciclev10024622m	scaffold_3	30021998	30023908
Al0406			-	-	-	-	-	-
Al0407		AAvailable marker	O	-	-	-	O	O		Ciclev10009315m	scaffold_1	26576059	26578193	C_unshiu_00131:mRNA_17.1	C_unshiu_00131	121152	123183	60S ribosomal protein L7	AGI-01	31.240	KmG-01	15.673	JtR-01S	57.666			RP-01	79.425
Al0408			O	-	-	-	-	-		Ciclev10031487m	scaffold_4	23737757	23740513	C_unshiu_00001:mRNA_109.1	C_unshiu_00001	727392	729266	F-box/kelch-repeat protein SKIP11	AGI-07	75.917	KmG-07	13.235	JtR-07	1.788
Al0409		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI201,SI252	Ciclev10024949m	scaffold_7	5042508	5046271	No					AGI-02	50.758	KmG-02	44.930	JtR-02	29.462	NAT-02S	90.742
Al0410			-	-	-	-	-	-		Ciclev10026113m	scaffold_7	7739782	7742295
Al0411		AAvailable marker	O	-	-	-	O	O		Ciclev10029439m	scaffold_8	19760077	19761961	C_unshiu_00011:mRNA_19.2	C_unshiu_00011	188649	189649	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-08	40.857
Al0412			-	-	-	-	-	-		Ciclev10023374m	scaffold_3	25612741	25615635
Al0413		AAvailable marker	-	-	-	O	O	O	SI275,SI299	Ciclev10004620m	scaffold_9	7579900	7583093	C_unshiu_00063:mRNA_61.1	C_unshiu_00063	483279	486427	Chloroplast beta-amylase 3	AGI-03	46.197	KmG-032	19.570	JtR-031	10.395			RP-03	33.559
Al0414			-	-	-	-	-	-		Ciclev10014243m	scaffold_2	34775232	34780330
Al0415		AAvailable marker	-	-	-	-	O	O	SI120,SI310	Ciclev10004660m	scaffold_9	2732900	2738896	C_unshiu_00040:mRNA_76.1	C_unshiu_00040	632823	638463	Mitogen-activated protein kinase 14	AGI-03	24.885	KmG-031				NAT-03	41.576
Al0416		OOthers	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00639:mRNA_12.1	C_unshiu_00639	90698	99467	Elongation factor 1-alpha	AGI-08	23.023			JtR-07	60.405	NAT-082	21.126
Al0417		MDisagree by Marco analysis	O	-	-	-	-	-	SI244,SI255	Ciclev10015483m	scaffold_2	35212691	35214865	C_unshiu_00048:mRNA_50.1	C_unshiu_00048	328418	330513	Kelch repeat-containing F-box family protein	AGI-06	20.297	KmG-06	62.256			NAT-06S	56.647
Al0418			-	-	-	-	-	-		Ciclev10004717m	scaffold_9	27765515	27767561
Al0419		OOthers	O	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181	C_unshiu_00394:mRNA_25.1	C_unshiu_00394	150531	152208	Hypothetical protein	AGI-03	17.378	KmG-09	9.593	JtR-09S	7.976
Al0420			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23068026	23072168
Al0421		OOthers	-	-	-	-	-	-		Ciclev10011875m	scaffold_6	11782952	11785527
Al0422		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662	C_unshiu_00032:mRNA_34.1	C_unshiu_00032	369423	370581	Subtilisin inhibitor 1, putative	AGI-08	93.695
Al0423	Al0422.2		-	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662
Al0424			-	-	-	-	-	-		Ciclev10005576m	scaffold_9	25493378	25500370
Al0425			-	-	-	-	-	-		Ciclev10013630m	scaffold_6	1290709	1292040
Al0426			-	-	-	-	-	-		Ciclev10007391m	scaffold_1	1128897	1137063
Al0427	Al0247.em		-	-	-	-	-	-		Ciclev10016829m	scaffold_2	23695881	23697100
Al0501		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10012221m	scaffold_6	14625884	14628443	C_unshiu_00032:mRNA_48.1	C_unshiu_00032	462609	490932	Tropinone reductase I
Al0502			-	-	-	-	-	-		Ciclev10011657m	scaffold_6	21464335	21470434
Al0503			-	-	-	-	-	-		Ciclev10011469m	scaffold_6	21236903	21242261
Al0504			-	-	-	-	-	-		Ciclev10015664m	scaffold_2	35273688	35277908
Al0505			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892	C_unshiu_00012:mRNA_14.1	C_unshiu_00012	117194	125051	Plasma membrane intrinsic protein									RP-07	51.815
Al0506			-	-	-	-	-	-		Ciclev10005101m	scaffold_9	30836435	30841216
Al0507			-	-	-	-	-	-		Ciclev10002395m	scaffold_5	17289723	17290702
Al0508			-	-	-	-	-	-		Ciclev10017102m	scaffold_2	35920186	35922196
Al0509			-	-	-	-	-	-		Ciclev10001812m	scaffold_5	39862762	39864726
Al0510			-	-	-	-	-	-		Ciclev10008176m	scaffold_1	22792920	22795069
Al0511			-	-	-	-	-	-		Ciclev10020158m	scaffold_3	25053425	25057795
Al0512			-	-	-	-	-	-		Ciclev10026719m	scaffold_7	4280712	4281481
Al0513		OOthers	-	-	-	-	-	-		Ciclev10009222m	scaffold_1	8046181	8049306	C_unshiu_00191:mRNA_21.1	C_unshiu_00191	243988	246458	Stem 28 kDa glycoprotein	AGI-01	60.031	KmG-01	41.591
Al0514		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme			KmG-04	32.217
Al0515		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI178	Ciclev10030023m	scaffold_8	2673135	2674232	C_unshiu_00152:mRNA_38.1	C_unshiu_00152	273851	275034	DNA-damage-repair/toleration protein DRT100	AGI-08	73.663			JtR-08	14.154	NAT-081	10.596
Al0516			-	-	-	-	-	-		Ciclev10019134m	scaffold_3	5981066	5985524
Al0517		AAvailable marker	-	-	-	-	O	O		Ciclev10028293m	scaffold_8	2572439	2574295	C_unshiu_00363:mRNA_1.1	C_unshiu_00363	5892	7583	Limonoid glucosyltransferase	AGI-08	74.016			JtR-08	15.435
Al0518			-	-	-	-	-	-		Ciclev10011450m	scaffold_6	23306386	23311678
Al0519		DDominant marker	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	No													RP-06.1
Al0520			-	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Al0521			-	-	-	-	-	-		Ciclev10029787m	scaffold_8	23136753	23137537
Al0522			-	-	-	-	-	-		Ciclev10008765m	scaffold_1	21082902	21086082
Al0523			-	-	-	-	-	-		Ciclev10009349m	scaffold_1	177116	180417
Al0524		AAvailable marker	O	O	-	-	O	O	SI043,SI341	Ciclev10031723m	scaffold_4	115362	118025	C_unshiu_02038:mRNA_4.1	C_unshiu_02038	34256	38775	Hypothetical protein	AGI-07	5.972			JtR-07	76.060			RP-07	74.381
Al0525		OOthers	O	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023	C_unshiu_00312:mRNA_20.2	C_unshiu_00312	114652	116351	High mobility group (HMG)-box protein	AGI-01	38.939	KmG-01	41.081
Al0526	Al0526.em		-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295
Al0601			-	-	-	-	-	-						C_unshiu_00065:mRNA_8.1	C_unshiu_00065	39268	43421	Probable GTP diphosphokinase RSH2, chloroplastic	AGI-08	93.624
Al0602		AAvailable marker	-	-	-	-	-	O		Ciclev10017248m	scaffold_2	27141148	27141869	C_unshiu_00017:mRNA_42.1	C_unshiu_00017	304994	305523	Hypothetical protein			KmG-06	18.450	JtR-06S	3.805
Al0603			-	-	-	-	-	-		Ciclev10007714m	scaffold_1	13325813	13336158
Al0604			-	-	-	-	-	-		Ciclev10000084m	scaffold_5	33791194	33800828
Al0604.2	Al0604.k		-	-	-	-	-	-		Ciclev10000084m	scaffold_5	33791194	33800828
Al0605		OOthers	-	-	-	-	-	-		Ciclev10022151m	scaffold_3	41434064	41437122	C_unshiu_00194:mRNA_5.1	C_unshiu_00194	38569	41571	Eukaryotic translation initiation factor 4E	AGI-05	48.750	KmG-05S	65.384
Al0606.2			-	-	-	-	-	-
Al0607			-	-	-	-	-	-		Ciclev10016035m	scaffold_2	36163290	36165355
Al0608			-	-	-	-	-	-		Ciclev10002359m	scaffold_5	6440802	6444240
Al0609			-	-	-	-	-	-		Ciclev10001329m	scaffold_5	42265153	42269676
Al0610			-	-	-	-	-	-		Ciclev10028696m	scaffold_8	23885103	23890220
Al0611			-	-	-	-	-	-
Al0612		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10001524m	scaffold_5	29481817	29485113	C_unshiu_01370:mRNA_2.1	C_unshiu_01370	27014	30283	UDP-glucuronic acid decarboxylase 1			KmG-09	28.332	JtR-09S	32.873
Al0613			-	-	-	-	-	-		Ciclev10031928m	scaffold_4	23078232	23081009
Al0614			-	-	-	-	-	-		Ciclev10022348m	scaffold_3	44987719	44991534	C_unshiu_00069:mRNA_32.1	C_unshiu_00069	220620	224375	Methyl-CpG-binding domain 4	AGI-05	56.788	KmG-06	35.565
Al0615			-	-	-	-	-	-		Ciclev10014304m	scaffold_2	22607375	22611126
Al0616			-	-	-	-	-	-		Ciclev10007561m	scaffold_1	4343812	4351112
Al0617		AAvailable marker	O	-	-	-	O	O		Ciclev10033546m	scaffold_4	1021179	1023023	C_unshiu_00012:mRNA_24.1	C_unshiu_00012	188654	191971	Ubiquitin-binding WIYLD domain protein	AGI-07	8.553			JtR-07	74.121
Al0618		AAvailable marker	-	-	-	-	O	O		Ciclev10000916m	scaffold_5	40872793	40877775	C_unshiu_00123:mRNA_34.1	C_unshiu_00123

Key word search

Target: Genome/map	Scaffold/LG