Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Af0001			-	-	-	-	-	-		Ciclev10033102m	scaffold_4	25190682	25192326
Af0002			-	-	-	-	-	-		Ciclev10026803m	scaffold_7	9468245	9468907
Af0003			-	-	-	-	-	-		Ciclev10017107m	scaffold_2	11373565	11374539
Af0004			O	-	-	-	-	-		Ciclev10025125m	scaffold_7	8447414	8453714	C_unshiu_00290:mRNA_10.1	C_unshiu_00290	83615	110154	Hypothetical protein	AGI-02	2.847
Af0005			-	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181
Af0006			-	-	-	-	-	-		Ciclev10001011m	scaffold_5	36883103	36887975
Af0007			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Af0008			-	-	-	-	-	-		Ciclev10017323m	scaffold_2	32749064	32749699
Af0009			-	-	-	-	-	-		Ciclev10024461m	scaffold_3	50406028	50412944
Af0010			-	-	-	-	-	-		Ciclev10004080m	scaffold_5	40297492	40299711
Af0011			-	-	-	-	-	-		Ciclev10025929m	scaffold_7	11357990	11362560
Af0012			-	-	-	-	-	-		Ciclev10006108m	scaffold_9	2458793	2459573
Af0013			-	-	-	-	-	-		Ciclev10023060m	scaffold_3	13416061	13417219
Af0014			-	-	-	-	-	-		Ciclev10023139m	scaffold_3	253879	254627
Af0015			-	-	-	-	-	-		Ciclev10019449m	scaffold_3	44021779	44027536	C_unshiu_00217:mRNA_10.1	C_unshiu_00217	86393	91294	Hypothetical protein	AGI-05	54.268
Af0016			-	-	-	-	-	-		Ciclev10022861m	scaffold_3	25074163	25075916	C_unshiu_00117:mRNA_7.1	C_unshiu_00117	38949	40765	Hypothetical protein	AGI-05	41.306
Af0017			-	-	-	-	-	-		Ciclev10029358m	scaffold_8	313112	317158
Af0018			-	-	-	-	-	-		Ciclev10000947m	scaffold_5	40691801	40694522
Af1003			O	-	-	-	-	-		Ciclev10001093m	scaffold_5	15605852	15610028	C_unshiu_00533:mRNA_20.1	C_unshiu_00533	131430	141111	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	AGI-02	22.436
Af1004			-	-	-	-	-	-		Ciclev10008926m	scaffold_1	24426760	24434342
Af1005			-	-	-	-	-	-		Ciclev10012491m	scaffold_6	20715590	20719704
Af1006			-	-	-	-	-	-		Ciclev10005512m	scaffold_9	24661109	24664797
Af1007			-	-	-	-	-	-		Ciclev10021398m	scaffold_3	12814731	12817148
Af1008			-	-	-	-	-	-		Ciclev10006973m	scaffold_9	2470085	2471703
Af1009			-	-	-	-	-	-		Ciclev10015365m	scaffold_2	35818327	35822366
Af1010			-	-	-	-	-	-		Ciclev10014106m	scaffold_2	31656510	31666206
Af1011			O	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243	C_unshiu_00009:mRNA_53.1	C_unshiu_00009	289462	299397	Hypothetical protein									RP-04	60.491
Af1012			-	-	-	-	-	-		Ciclev10026672m	scaffold_7	16270394	16272027
Af1013			-	-	-	-	-	-		Ciclev10022053m	scaffold_3	48621909	48624876
Af1014			-	-	-	-	-	-		Ciclev10018683m	scaffold_3	43594638	43605172
Af1016			-	-	-	-	-	-		Ciclev10025840m	scaffold_7	2394471	2397293
Af1017			O	-	-	-	-	-		Ciclev10006402m	scaffold_9	22671554	22672639	No					AGI-03	46.274
Af1019			-	-	-	-	-	-		Ciclev10005635m	scaffold_9	192512	196670
Af1021			-	-	-	-	-	-		Ciclev10022113m	scaffold_3	40664635	40665640
Af1022			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Af1023			-	-	-	-	-	-		Ciclev10028042m	scaffold_8	2719654	2725331
Af1024			-	-	-	-	-	-		Ciclev10016735m	scaffold_2	35841859	35844177
Af1025			-	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028
Af1026			O	-	-	-	-	-		Ciclev10016450m	scaffold_2	24690261	24692734	C_unshiu_00136:mRNA_33.1	C_unshiu_00136	278221	280719	Period circadian protein, putative isoform 1									RP-06.1	24.027
Af1027			O	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297
Af1028			O	-	-	-	-	-		Ciclev10000335m	scaffold_5	42113621	42120391
Af1029			-	-	-	-	-	-		Ciclev10022553m	scaffold_3	2110308	2113166
Af1030			-	-	-	-	-	-		Ciclev10026876m	scaffold_7	3930788	3932748
Af1031			O	-	-	-	-	-		Ciclev10025711m	scaffold_7	718488	722516	C_unshiu_00353:mRNA_22.1	C_unshiu_00353	151145	154679	3-dehydroquinate synthase AroB	AGI-02	76.168
Af1032			O	-	-	-	-	-		Ciclev10009868m	scaffold_1	8377489	8379348
Af1033			O	-	-	-	-	-		Ciclev10016063m	scaffold_2	10456899	10459385
Af1034			-	-	-	-	-	-		Ciclev10013228m	scaffold_6	1950121	1950908
Af1035			O	-	-	-	-	-		Ciclev10030982m	scaffold_4	23469184	23472872
Af1036			O	-	-	-	-	-		Ciclev10021080m	scaffold_3	7016831	7019863	C_unshiu_00425:mRNA_11.1	C_unshiu_00425	65596	68473	Replication factor C subunit 2	AGI-05	43.118
Af1037			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1969590	1972842	C_unshiu_00058:mRNA_65.1	C_unshiu_00058	521901	525000	Uroporphyrinogen decarboxylase	AGI-04	50.972
Af1038			-	-	-	-	-	-
Af1039			-	-	-	-	-	-		Ciclev10031458m	scaffold_4	14381144	14384897
Af1040			-	-	-	-	-	-		Ciclev10019364m	scaffold_3	29351854	29354190
Af1041			-	-	-	-	-	-		Ciclev10002311m	scaffold_5	40300306	40304768
Af1042			O	-	-	-	-	-		Ciclev10017429m	scaffold_2	28786444	28788097	No					AGI-06	55.700
Af1043			-	-	-	-	-	-		Ciclev10026060m	scaffold_7	20049936	20052008	C_unshiu_00519:mRNA_19.1	C_unshiu_00519	110187	111261	Ribonucleoside-diphosphate reductase subunit M2	AGI-02	44.231
Af1044			-	-	-	-	-	-		Ciclev10013662m	scaffold_6	16378858	16383103
Af1045			-	-	-	-	-	-		Ciclev10000659m	scaffold_5	9197774	9204364
Af1046			-	-	-	-	-	-		Ciclev10000873m	scaffold_5	39992234	39996269
Af1047			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309	C_unshiu_01252:mRNA_3.1	C_unshiu_01252	60669	66705	NADH dehydrogenase subunit 11	AGI-05	41.306
Af1048			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309
Af1050			-	-	-	-	-	-		Ciclev10002662m	scaffold_5	42879563	42882316
Af1051			O	-	-	-	-	-		Ciclev10000105m	scaffold_5	35093132	35106001
Af1052			O	-	-	-	-	-		Ciclev10004444m	scaffold_9	12808154	12820311	C_unshiu_00508:mRNA_9.1	C_unshiu_00508	40385	58179	Hypothetical protein	AGI-08	56.724
Af1053			O	-	-	-	-	-		Ciclev10014664m	scaffold_2	29206818	29208977
Af1054			-	-	-	-	-	-		Ciclev10005132m	scaffold_9	2033331	2036879
Af1055			-	-	-	-	-	-		Ciclev10001625m	scaffold_5	42297979	42300281
Af1056			-	-	-	-	-	-		Ciclev10015905m	scaffold_2	26595972	26598955	C_unshiu_00262:mRNA_14.1	C_unshiu_00262	84573	87520	Purple acid phosphatase 3	AGI-06	66.320
Af1057			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Af1058			-	-	-	-	-	-		Ciclev10018655m	scaffold_3	23001026	23009675
Af1059			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23066384	23072168	C_unshiu_00038:mRNA_98.1	C_unshiu_00038	554982	560549	Plastidic glucose transporter 4	AGI-04	44.840
Af1060			O	-	-	-	-	-		Ciclev10000400m	scaffold_5	42918371	42923480	C_unshiu_00370:mRNA_16.1	C_unshiu_00370	75283	79772	Tonoplast monosaccharide transporter 2	AGI-09	23.647
Af1061			O	-	-	-	-	-		Ciclev10024969m	scaffold_7	6080410	6084393
Af1062			-	-	-	-	-	-		Ciclev10012766m	scaffold_6	14892939	14897320	C_unshiu_00102:mRNA_47.1	C_unshiu_00102	331172	333886	PRA1 family protein A1	AGI-08	93.624
Af1064			-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Af1065			-	-	-	-	-	-		Ciclev10009538m	scaffold_1	11008759	11012720
Af1066			-	-	-	-	-	-		Ciclev10024951m	scaffold_7	3887010	3890047
Af1067			O	-	-	-	-	-
Af1068			O	-	-	-	-	-		Ciclev10021732m	scaffold_3	40110008	40113420	C_unshiu_00335:mRNA_13.1	C_unshiu_00335	99790	103133	Protein vip1	AGI-05	48.750
Af1069			-	-	-	-	-	-		Ciclev10005528m	scaffold_9	1787121	1788837
Af1070			O	-	-	-	-	-		Ciclev10008140m	scaffold_1	17308566	17311235
Af1071			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Af1072			-	-	-	-	-	-		Ciclev10005792m	scaffold_9	13545137	13548134
Af1073			O	-	-	-	-	-		Ciclev10021041m	scaffold_3	632882	635612
Af1074			-	-	-	-	-	-		Ciclev10015644m	scaffold_2	12308761	12314225
Af1077			-	-	-	-	-	-		Ciclev10019936m	scaffold_3	47876448	47878633
Af1078			-	-	-	-	-	-		Ciclev10007573m	scaffold_1	9428841	9434694
Af1079			-	-	-	-	-	-		Ciclev10009570m	scaffold_1	3255140	3258139
Af1080			-	-	-	-	-	-		Ciclev10001557m	scaffold_5	38314989	38317341
Af1081			-	-	-	-	-	-		Ciclev10010514m	scaffold_1	5650217	5655629
Af1082			-	-	-	-	-	-		Ciclev10021811m	scaffold_3	43869583	43874373
Af1083			-	-	-	-	-	-		Ciclev10025156m	scaffold_7	15505556	15510930
Af1084			-	-	-	-	-	-		Ciclev10008467m	scaffold_1	25716862	25720071	C_unshiu_00066:mRNA_57.1	C_unshiu_00066	369928	382143	Hypothetical protein	AGI-01	24.643
Af1085			-	-	-	-	-	-		Ciclev10001010m	scaffold_5	40691801	40694522
Af1086			-	-	-	-	-	-		Ciclev10031563m	scaffold_4	10510018	10517939	C_unshiu_00028:mRNA_1.2	C_unshiu_00028	4115	12036	AP-2 complex subunit mu	AGI-05	41.306
Af1087			O	-	-	-	-	-		Ciclev10019689m	scaffold_3	24796351	24800588	C_unshiu_00286:mRNA_17.1	C_unshiu_00286	132648	135466	Glycine hydroxymethyltransferase	AGI-05	41.306
Af1088			O	-	-	-	-	-		Ciclev10031611m	scaffold_4	17171114	17174966
Af1089			-	-	-	-	-	-		Ciclev10028589m	scaffold_8	6068944	6075685
Af1090			-	-	-	-	-	-		Ciclev10019200m	scaffold_3	951691	958430
Af1091			O	-	-	-	-	-		Ciclev10021043m	scaffold_3	43316046	43317909	C_unshiu_00411:mRNA_2.1	C_unshiu_00411	11510	13352	Arabinose 5-phosphate isomerase	AGI-05	52.655
Af1092			O	-	-	-	-	-		Ciclev10019279m	scaffold_3	50868096	50873164
Af1093			-	-	-	-	-	-		Ciclev10011263m	scaffold_6	19055518	19058726
Af1094			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein	AGI-01	30.175
Af1095			-	-	-	-	-	-		Ciclev10014502m	scaffold_2	10695424	10700095
Af1096			-	-	-	-	-	-		Ciclev10020597m	scaffold_3	42061488	42063267	C_unshiu_00778:mRNA_10.1	C_unshiu_00778	89741	91509	Cytochrome P450 82A4	AGI-05	51.052
Af1097			-	-	-	-	-	-		Ciclev10014845m	scaffold_2	23829862	23832918
Af1098			-	-	-	-	-	-		Ciclev10028668m	scaffold_8	356241	360220
Af1099			-	-	-	-	-	-		Ciclev10019462m	scaffold_3	6072460	6076187
Af1100			-	-	-	-	-	-		Ciclev10026703m	scaffold_7	10853487	10855215	C_unshiu_00451:mRNA_17.1	C_unshiu_00451	120744	122474	Ran BP2/NZF zinc finger-like superfamily protein isoform 1	AGI-02	13.326
Af1101			-	-	-	-	-	-		Ciclev10022644m	scaffold_3	8843644	8845811
Af1102			-	-	-	-	-	-		Ciclev10020214m	scaffold_3	41627952	41634431
Af1103			-	-	-	-	-	-		Ciclev10018380m	scaffold_2	11393303	11394035
Af1104			-	-	-	-	-	-		Ciclev10015941m	scaffold_2	32155298	32158290
Af1105			-	-	-	-	-	-		Ciclev10002128m	scaffold_5	41177874	41181556
Af1106			-	-	-	-	-	-		Ciclev10031741m	scaffold_4	22131142	22133007
Af1107			-	-	-	-	-	-		Ciclev10009146m	scaffold_1	4606912	4610637
Af1108			-	-	-	-	-	-		Ciclev10009222m	scaffold_1	8046181	8049306
Af1109			-	-	-	-	-	-						C_unshiu_00194:mRNA_16.1	C_unshiu_00194	96415	98120	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	AGI-05	48.590
Af1110			-	-	-	-	-	-		Ciclev10028599m	scaffold_8	9656865	9660001	C_unshiu_01425:mRNA_1.1	C_unshiu_01425	333	5522	N-carbamoylputrescine amidase	AGI-08	56.690
Af1111			-	-	-	-	-	-		Ciclev10015086m	scaffold_2	23021193	23023457	C_unshiu_00172:mRNA_31.1	C_unshiu_00172	270783	273047	Glucan endo-1,3-beta-glucosidase 13	AGI-06	83.445
Af1112			-	-	-	-	-	-		Ciclev10001559m	scaffold_5	41496792	41499173
Af1113			-	-	-	-	-	-		Ciclev10028842m	scaffold_8	1376123	1378446
Af1114			-	-	-	-	-	-		Ciclev10022658m	scaffold_3	602713	605468
Af1115			-	-	-	-	-	-		Ciclev10020832m	scaffold_3	20577786	20583404
Af1116			-	-	-	-	-	-		Ciclev10001154m	scaffold_5	6749024	6753178	C_unshiu_00100:mRNA_44.1	C_unshiu_00100	361556	365479	Magnesium transporter MRS2-like protein	AGI-09	85.810
Af1117			-	-	-	-	-	-		Ciclev10028909m	scaffold_8	12563102	12564623
Af1118			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Af1119			-	-	-	-	-	-		Ciclev10012975m	scaffold_6	18723147	18725557
Af1120			-	-	-	-	-	-		Ciclev10008829m	scaffold_1	11232482	11237918
Af1121			-	-	-	-	-	-		Ciclev10025591m	scaffold_7	6127464	6131417
Af1122			-	-	-	-	-	-		Ciclev10033093m	scaffold_4	23871593	23873478
Af1123			-	-	-	-	-	-		Ciclev10009597m	scaffold_1	1687894	1690412
Af1124			-	-	-	-	-	-
Af1126			-	-	-	-	-	-		Ciclev10026538m	scaffold_7	20656099	20658251
Af1127			-	-	-	-	-	-		Ciclev10016337m	scaffold_2	32998560	33003916
Af1128			-	-	-	-	-	-		Ciclev10022649m	scaffold_3	49508288	49511063
Af1129			-	-	-	-	-	-		Ciclev10014531m	scaffold_2	8727346	8730038
Af1130			-	-	-	-	-	-		Ciclev10012011m	scaffold_6	22425094	22426402
Af1131			-	-	-	-	-	-		Ciclev10006197m	scaffold_9	2362829	2365557
Af1132			-	-	-	-	-	-		Ciclev10005061m	scaffold_9	1836250	1840208
Af1133			-	-	-	-	-	-		Ciclev10001729m	scaffold_5	42978752	42983516
Af1134			-	-	-	-	-	-		Ciclev10032388m	scaffold_4	21443803	21447097
Af1135			-	-	-	-	-	-		Ciclev10002795m	scaffold_5	33256354	33257201
Af1136			-	-	-	-	-	-		Ciclev10002356m	scaffold_5	21354054	21361949
Af1137			-	-	-	-	-	-		Ciclev10009474m	scaffold_1	2038681	2041094
Af1138			-	-	-	-	-	-		Ciclev10002375m	scaffold_5	40560109	40563236
Af1139			-	-	-	-	-	-		Ciclev10000272m	scaffold_5	42653994	42661287
Af1140			-	-	-	-	-	-		Ciclev10029224m	scaffold_8	1336907	1339200
Af1141			-	-	-	-	-	-
Af1142			-	-	-	-	-	-		Ciclev10008681m	scaffold_1	487184	489198
Af1143			-	-	-	-	-	-		Ciclev10012182m	scaffold_6	21127984	21132025
Af1145			-	-	-	-	-	-		Ciclev10018013m	scaffold_2	24565857	24567752
Af1146			-	-	-	-	-	-		Ciclev10008189m	scaffold_1	22593671	22599178
Af1147			-	-	-	-	-	-		Ciclev10012837m	scaffold_6	22365433	22367412
Af1148			-	-	-	-	-	-		Ciclev10025238m	scaffold_7	7904865	7908319
Af1149			-	-	-	-	-	-		Ciclev10025360m	scaffold_7	12985954	12989228	C_unshiu_02261:mRNA_2.1	C_unshiu_02261	19156	21966	Glycerol kinase	AGI-05	21.630
Af1150			-	-	-	-	-	-		Ciclev10031943m	scaffold_4	25409035	25412164
Af1151			-	-	-	-	-	-		Ciclev10022903m	scaffold_3	36608197	36611090
Af1153			-	-	-	-	-	-		Ciclev10015940m	scaffold_2	20124170	20127095
Af1154			-	-	-	-	-	-		Ciclev10029070m	scaffold_8	24143988	24146294
Af1155			-	-	-	-	-	-		Ciclev10016372m	scaffold_2	35836830	35839763
Af1156			-	-	-	-	-	-		Ciclev10028887m	scaffold_8	6901630	6904625
Af1157			-	-	-	-	-	-		Ciclev10009325m	scaffold_1	1234555	1235706
Af1158			-	-	-	-	-	-		Ciclev10020023m	scaffold_3	3241862	3247042
Af1159			-	-	-	-	-	-		Ciclev10022925m	scaffold_3	2774465	2775592
Af1160			-	-	-	-	-	-		Ciclev10022213m	scaffold_3	7425353	7428313
Af1161			-	-	-	-	-	-		Ciclev10017060m	scaffold_2	4495596	4498439
Af1162			-	-	-	-	-	-		Ciclev10020996m	scaffold_3	49546712	49548191
Af1163			-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Af1164			-	-	-	-	-	-		Ciclev10019787m	scaffold_3	5981066	5985524
Af1165			-	-	-	-	-	-		Ciclev10021620m	scaffold_3	39331731	39333098
Af1166			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Af1168			-	-	-	-	-	-		Ciclev10022842m	scaffold_3	28389625	28390574
Af1169			-	-	-	-	-	-		Ciclev10006148m	scaffold_9	1844420	1846037
Af1169b			-	-	-	-	-	-		Ciclev10029381m	scaffold_8	22375153	22376849
Af1171			-	-	-	-	-	-		Ciclev10008298m	scaffold_1	275263	280936
Af1172			-	-	-	-	-	-		Ciclev10001677m	scaffold_5	35974954	35979998
Af1173			-	-	-	-	-	-		Ciclev10009205m	scaffold_1	24591598	24593689
Af1174			-	-	-	-	-	-		Ciclev10014963m	scaffold_2	29314176	29319032
Af1175			-	-	-	-	-	-		Ciclev10009729m	scaffold_1	3647539	3651252
Af1176			-	-	-	-	-	-		Ciclev10017100m	scaffold_2	35980341	35983262
Af1177			-	-	-	-	-	-		Ciclev10005989m	scaffold_9	2168387	2170546	C_unshiu_00085:mRNA_13.1	C_unshiu_00085	78341	80308	CASP-like protein 1E1	AGI-03	18.579
Af1178			-	-	-	-	-	-
Af1179			-	-	-	-	-	-		Ciclev10006271m	scaffold_9	29136067	29137517
Af1180			-	-	-	-	-	-		Ciclev10003612m	scaffold_5	27192350	27195683
Af1181			-	-	-	-	-	-		Ciclev10009123m	scaffold_1	8063530	8066056
Af1182			-	-	-	-	-	-		Ciclev10020464m	scaffold_3	42874814	42879300
Af1183			-	-	-	-	-	-		Ciclev10005344m	scaffold_9	280915	283060
Af1184			-	-	-	-	-	-		Ciclev10019895m	scaffold_3	32105774	32108155
Af1185			-	-	-	-	-	-		Ciclev10012743m	scaffold_6	12231037	12235473
Af1186			-	-	-	-	-	-
Af1187			-	-	-	-	-	-		Ciclev10031748m	scaffold_4	24996017	25000652	C_unshiu_00001:mRNA_314.1	C_unshiu_00001	1991693	1996431	Tocopherol O-methyltransferase	AGI-07	85.027
Af1188			-	-	-	-	-	-		Ciclev10021960m	scaffold_3	5606601	5609366
Af1189			-	-	-	-	-	-		Ciclev10005793m	scaffold_9	14837074	14840606
Af1190			-	-	-	-	-	-		Ciclev10023762m	scaffold_3	46510039	46512543
Af1191			-	-	-	-	-	-		Ciclev10028098m	scaffold_8	180851	185769
Af1192			-	-	-	-	-	-		Ciclev10022723m	scaffold_3	37094785	37098257
Af1193			-	-	-	-	-	-		Ciclev10028241m	scaffold_8	23456630	23459052
Af1194			-	-	-	-	-	-		Ciclev10026223m	scaffold_7	8255046	8256442
Af1195			-	-	-	-	-	-		Ciclev10021820m	scaffold_3	42034255	42039591
Af1196			-	-	-	-	-	-		Ciclev10032970m	scaffold_4	21090408	21092841
Af1197			-	-	-	-	-	-		Ciclev10009151m	scaffold_1	16467942	16471056
Af1198			-	-	-	-	-	-		Ciclev10021819m	scaffold_3	2319675	2322962
Af1199			-	-	-	-	-	-		Ciclev10019763m	scaffold_3	49554050	49560198
Af1200			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Af1201			-	-	-	-	-	-		Ciclev10012248m	scaffold_6	16637520	16640347
Af1202			-	-	-	-	-	-		Ciclev10033216m	scaffold_4	15927576	15929918
Af1203			-	-	-	-	-	-		Ciclev10021949m	scaffold_3	40219315	40224503
Af1204			-	-	-	-	-	-		Ciclev10029631m	scaffold_8	24097206	24099101
Af1205			-	-	-	-	-	-		Ciclev10002396m	scaffold_5	34161721	34162652	C_unshiu_00196:mRNA_4.1	C_unshiu_00196	15219	16117	Basic helix-loop-helix DNA-binding superfamily protein, putative	AGI-09	64.754
Af1206			-	-	-	-	-	-		Ciclev10002697m	scaffold_5	42109316	42112542
Af1207			-	-	-	-	-	-		Ciclev10025335m	scaffold_7	15605065	15607345	C_unshiu_00628:mRNA_20.1	C_unshiu_00628	144683	146646	Flavonoid 3'-monooxygenase	AGI-02	21.344
Af1208			-	-	-	-	-	-		Ciclev10029134m	scaffold_8	23036291	23037524	C_unshiu_02220:mRNA_1.1	C_unshiu_02220	11982	13216	Tonoplast intrinsic protein	AGI-08	17.057
Af1209			-	-	-	-	-	-		Ciclev10022439m	scaffold_3	1281119	1281817
Af1210			-	-	-	-	-	-		Ciclev10026807m	scaffold_7	20056475	20058190
Af1211			-	-	-	-	-	-		Ciclev10007095m	scaffold_9	6226731	6229337
Af1212			-	-	-	-	-	-		Ciclev10032370m	scaffold_4	17118916	17121135
Af1213			-	-	-	-	-	-		Ciclev10010027m	scaffold_1	2821922	2823925
Af1214			-	-	-	-	-	-		Ciclev10005447m	scaffold_9	12839345	12844087
Af1218			-	-	-	-	-	-		Ciclev10009894m	scaffold_1	26237405	26239791
Af1219			-	-	-	-	-	-		Ciclev10022271m	scaffold_3	42200299	42203934
Af1220			-	-	-	-	-	-		Ciclev10013088m	scaffold_6	22724682	22726973
Af1221			-	-	-	-	-	-		Ciclev10022216m	scaffold_3	6329133	6332201
Af1222			-	-	-	-	-	-		Ciclev10018015m	scaffold_2	35934589	35935920
Af1223			-	-	-	-	-	-		Ciclev10009839m	scaffold_1	27111412	27114276	C_unshiu_00347:mRNA_8.1	C_unshiu_00347	66555	79401	Flavin-binding kelch domain F box protein	AGI-09	97.668
Af1224			-	-	-	-	-	-		Ciclev10002263m	scaffold_5	9979515	9982669
Af1225			-	-	-	-	-	-		Ciclev10027859m	scaffold_8	1094366	1097096
Af1226			-	-	-	-	-	-
Af1227			-	-	-	-	-	-		Ciclev10022750m	scaffold_3	42672043	42673648
Af1228			-	-	-	-	-	-		Ciclev10026542m	scaffold_7	8317978	8319191
Af1229			-	-	-	-	-	-		Ciclev10016825m	scaffold_2	13441813	13443080
Af1230			-	-	-	-	-	-		Ciclev10026057m	scaffold_7	370952	372493
Af1231			-	-	-	-	-	-		Ciclev10002376m	scaffold_5	12183281	12186007
Af1232			-	-	-	-	-	-		Ciclev10011608m	scaffold_6	20541096	20546049
Af1233			-	-	-	-	-	-		Ciclev10025897m	scaffold_7	20841942	20846077
Af1234			-	-	-	-	-	-		Ciclev10007572m	scaffold_1	19975332	19979144
Af1235			-	-	-	-	-	-		Ciclev10026233m	scaffold_7	17212895	17215557
Af1236			-	-	-	-	-	-		Ciclev10015450m	scaffold_2	26852381	26857537
Af1237			-	-	-	-	-	-		Ciclev10021146m	scaffold_3	1058012	1060668
Af1238			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Af1239			-	-	-	-	-	-
Af1240			-	-	-	-	-	-		Ciclev10011152m	scaffold_6	23748847	23753978
Af1241			-	-	-	-	-	-		Ciclev10008227m	scaffold_1	1401842	1406346
Af1242			-	-	-	-	-	-		Ciclev10019465m	scaffold_3	50417890	50421625
Af1244			-	-	-	-	-	-		Ciclev10006361m	scaffold_9	4448167	4450777
Af1244b			-	-	-	-	-	-		Ciclev10016184m	scaffold_2	27779247	27785501
Af1245			-	-	-	-	-	-		Ciclev10019739m	scaffold_3	48129123	48133714
Af1246			-	-	-	-	-	-		Ciclev10002048m	scaffold_5	28797135	28801282
Af1247			-	-	-	-	-	-		Ciclev10011980m	scaffold_6	20638049	20641557
Af1248			-	-	-	-	-	-		Ciclev10007063m	scaffold_9	1638770	1641073
Af1249			-	-	-	-	-	-		Ciclev10017171m	scaffold_2	33660011	33663665
Af1251			-	-	-	-	-	-		Ciclev10002135m	scaffold_5	29706688	29710388
Af1252			-	-	-	-	-	-		Ciclev10027813m	scaffold_8	24202384	24209439
Af1253			-	-	-	-	-	-		Ciclev10020405m	scaffold_3	3201206	3204377	C_unshiu_00163:mRNA_29.1	C_unshiu_00163	211551	214568	Phosphate/phosphoenolpyruvate translocator	AGI-05	24.709
Af1254			-	-	-	-	-	-		Ciclev10003301m	scaffold_5	36751453	36759896
Af1255			-	-	-	-	-	-		Ciclev10006003m	scaffold_9	28061221	28063450
Af1256			-	-	-	-	-	-		Ciclev10008233m	scaffold_1	940514	942972
Af1257			-	-	-	-	-	-		Ciclev10033061m	scaffold_4	25059045	25061910
Af1258			-	-	-	-	-	-		Ciclev10029223m	scaffold_8	24591409	24594117
Af1259			-	-	-	-	-	-		Ciclev10030701m	scaffold_4	15528851	15538252
Af1260			-	-	-	-	-	-		Ciclev10001188m	scaffold_5	38869666	38875561
Af1261			-	-	-	-	-	-		Ciclev10027978m	scaffold_8	20321003	20329872
Af1262			-	-	-	-	-	-		Ciclev10009571m	scaffold_1	28424576	28427136
Af1263			-	-	-	-	-	-		Ciclev10005448m	scaffold_9	28494348	28496251
Af1264			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Af1265			-	-	-	-	-	-		Ciclev10031646m	scaffold_4	22789104	22792252
Af1266			-	-	-	-	-	-		Ciclev10032367m	scaffold_4	8400378	8404853
Af1267			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Af1268			-	-	-	-	-	-		Ciclev10011546m	scaffold_6	22523213	22529556
Af1269			-	-	-	-	-	-		Ciclev10009375m	scaffold_1	27043124	27045483
Af1270			-	-	-	-	-	-		Ciclev10011405m	scaffold_6	17589895	17593051
Af1271			-	-	-	-	-	-		Ciclev10025653m	scaffold_7	13323583	13328683
Af1272			-	-	-	-	-	-		Ciclev10019689m	scaffold_3	24796351	24800588
Af1273			-	-	-	-	-	-		Ciclev10024624m	scaffold_3	12214029	12215007
Af1274			-	-	-	-	-	-		Ciclev10009370m	scaffold_1	3152548	3153983
Af1275			-	-	-	-	-	-		Ciclev10028274m	scaffold_8	13035174	13037307
Af1276			-	-	-	-	-	-		Ciclev10022100m	scaffold_3	7080222	7081373
Af1277			-	-	-	-	-	-		Ciclev10030804m	scaffold_4	23811511	23814763
Af1278			-	-	-	-	-	-		Ciclev10009508m	scaffold_1	6903804	6908960
Af1279			-	-	-	-	-	-		Ciclev10031302m	scaffold_4	14510787	14516311
Af1281			-	-	-	-	-	-		Ciclev10029683m	scaffold_8	20366637	20367616
Af1282			-	-	-	-	-	-
Af1283			-	-	-	-	-	-		Ciclev10016366m	scaffold_2	29757723	29762309
Af1285			-	-	-	-	-	-		Ciclev10010796m	scaffold_1	12807597	12808725
Af1286			-	-	-	-	-	-
Af1287			-	-	-	-	-	-		Ciclev10022137m	scaffold_3	39601128	39604586
Af1288			-	-	-	-	-	-		Ciclev10016357m	scaffold_2	35803512	35805985
Af1289			-	-	-	-	-	-		Ciclev10001940m	scaffold_5	4289876	4293681
Af1290			-	-	-	-	-	-		Ciclev10029472m	scaffold_8	24413157	24415621
Af1291			-	-	-	-	-	-		Ciclev10026757m	scaffold_7	4779400	4780310
Af1292			-	-	-	-	-	-		Ciclev10026736m	scaffold_7	6677314	6680214
Af1293			-	-	-	-	-	-		Ciclev10014998m	scaffold_2	16597796	16602257
Af1294			-	-	-	-	-	-		Ciclev10018252m	scaffold_2	27774863	27778271
Af1295			-	-	-	-	-	-		Ciclev10030829m	scaffold_4	3468083	3477274
Af1296			-	-	-	-	-	-		Ciclev10031556m	scaffold_4	19133592	19137895
Af1297			-	-	-	-	-	-		Ciclev10013207m	scaffold_6	23311867	23313814
Af1298			-	-	-	-	-	-		Ciclev10005845m	scaffold_9	2037273	2040825
Af1299			-	-	-	-	-	-		Ciclev10017055m	scaffold_2	27638163	27639131
Af1300			-	-	-	-	-	-		Ciclev10008203m	scaffold_1	8539647	8542949
Af1301			-	-	-	-	-	-		Ciclev10025759m	scaffold_7	866845	870030
Af1302			-	-	-	-	-	-		Ciclev10031454m	scaffold_4	14457766	14462726
Af1303			-	-	-	-	-	-		Ciclev10009361m	scaffold_1	22810929	22812161
Af1304			-	-	-	-	-	-		Ciclev10019494m	scaffold_3	2210485	2215202
Af1305			-	-	-	-	-	-		Ciclev10029439m	scaffold_8	19760077	19761961
Af1306			-	-	-	-	-	-		Ciclev10014843m	scaffold_2	28968668	28973736
Af1307			-	-	-	-	-	-		Ciclev10005707m	scaffold_9	5310513	5314498
Af1308			-	-	-	-	-	-		Ciclev10025747m	scaffold_7	13625504	13630800
Af1309			-	-	-	-	-	-		Ciclev10021713m	scaffold_3	50647753	50652010
Af1310			-	-	-	-	-	-		Ciclev10016380m	scaffold_2	14481402	14484929
Af1311			-	-	-	-	-	-		Ciclev10009720m	scaffold_1	2025698	2028188
Af1312			-	-	-	-	-	-		Ciclev10014367m	scaffold_2	29022433	29030537	C_unshiu_00022:mRNA_44.1	C_unshiu_00022	308324	316293	Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1	AGI-06	37.883
Af1313			-	-	-	-	-	-		Ciclev10014748m	scaffold_2	31222299	31225439
Af1314			-	-	-	-	-	-		Ciclev10001751m	scaffold_5	38283419	38284959
Af1315			-	-	-	-	-	-		Ciclev10025598m	scaffold_7	203839	207450
Af1316			-	-	-	-	-	-		Ciclev10006289m	scaffold_9	685220	687072
Af1317			-	-	-	-	-	-		Ciclev10022803m	scaffold_3	35932198	35935023
Af1318			-	-	-	-	-	-		Ciclev10016868m	scaffold_2	12549543	12550712
Af1320			-	-	-	-	-	-		Ciclev10018023m	scaffold_2	34602479	34604518
Af1321			-	-	-	-	-	-		Ciclev10009751m	scaffold_1	16371168	16375666	C_unshiu_00108:mRNA_25.1	C_unshiu_00108	320409	344557	Hypothetical protein	AGI-06	34.500
Af1322			-	-	-	-	-	-		Ciclev10003088m	scaffold_5	41715562	41717774
Af1324			-	-	-	-	-	-		Ciclev10002404m	scaffold_5	38189669	38190638
Af1325			-	-	-	-	-	-		Ciclev10026096m	scaffold_7	6287460	6289468
Af1326			-	-	-	-	-	-		Ciclev10021439m	scaffold_3	43258339	43260615
Af1327			-	-	-	-	-	-		Ciclev10006293m	scaffold_9	29498595	29499368
Af1328			-	-	-	-	-	-		Ciclev10022653m	scaffold_3	39834680	39837971
Af1329			-	-	-	-	-	-
Af1330			-	-	-	-	-	-		Ciclev10032948m	scaffold_4	19927084	19929921
Af1331			-	-	-	-	-	-		Ciclev10002737m	scaffold_5	41386409	41389807
Af1332			-	-	-	-	-	-		Ciclev10013051m	scaffold_6	20834427	20836151	C_unshiu_00052:mRNA_57.1	C_unshiu_00052	455959	457684	60S acidic ribosomal protein	AGI-04
Af1333			-	-	-	-	-	-		Ciclev10012166m	scaffold_6	14281197	14286862
Af1335			-	-	-	-	-	-		Ciclev10016822m	scaffold_2	27549660	27551146
Af1336			-	-	-	-	-	-		Ciclev10012322m	scaffold_6	8621439	8630049
Af1337			-	-	-	-	-	-		Ciclev10024178m	scaffold_3	23419574	23420180
Af1338			-	-	-	-	-	-		Ciclev10004154m	scaffold_9	24666092	24671850
Af1340			-	-	-	-	-	-		Ciclev10015433m	scaffold_2	35470078	35472862
Af1341			-	-	-	-	-	-		Ciclev10002526m	scaffold_5	43186618	43188986
Af1342			-	-	-	-	-	-		Ciclev10020692m	scaffold_3	29292111	29295993
Af1343			-	-	-	-	-	-		Ciclev10006560m	scaffold_9	28035355	28036664
Af1344			-	-	-	-	-	-		Ciclev10006134m	scaffold_9	29408194	29411173
Af1345			-	-	-	-	-	-		Ciclev10013023m	scaffold_6	13082313	13084012	C_unshiu_01022:mRNA_2.1	C_unshiu_01022	8566	10161	Histone H2A	AGI-08	93.624
Af1346			-	-	-	-	-	-		Ciclev10013045m	scaffold_6	13547529	13550344
Af1347			-	-	-	-	-	-		Ciclev10011781m	scaffold_6	24430779	24434240
Af1348			-	-	-	-	-	-		Ciclev10005778m	scaffold_9	21216748	21221111
Af1349			-	-	-	-	-	-		Ciclev10032073m	scaffold_4	3290273	3293928
Af1350			-	-	-	-	-	-		Ciclev10008817m	scaffold_1	25017748	25021583
Af1351			-	-	-	-	-	-		Ciclev10016286m	scaffold_2	34918217	34919258
Af1352			-	-	-	-	-	-		Ciclev10029282m	scaffold_8	11113259	11117344
Af1353			-	-	-	-	-	-		Ciclev10009740m	scaffold_1	14026557	14027565
Af1354			-	-	-	-	-	-		Ciclev10029831m	scaffold_8	21348947	21352692
Af1355			-	-	-	-	-	-
Af1356			-	-	-	-	-	-		Ciclev10009976m	scaffold_1	22837500	22839817
Af1357			-	-	-	-	-	-		Ciclev10019924m	scaffold_3	3650294	3652372
Af1358			-	-	-	-	-	-		Ciclev10004514m	scaffold_9	566506	571956
Af1359			-	-	-	-	-	-		Ciclev10007524m	scaffold_1	25987803	25992258
Af1360			-	-	-	-	-	-		Ciclev10008482m	scaffold_1	3061549	3065503
Af1361			-	-	-	-	-	-		Ciclev10005795m	scaffold_9	28903616	28907377
Af1362			-	-	-	-	-	-		Ciclev10027931m	scaffold_8	2888992	2895645	C_unshiu_00152:mRNA_9.1	C_unshiu_00152	72564	86513	Hypothetical protein	AGI-08	80.366
Af1363			-	-	-	-	-	-		Ciclev10015634m	scaffold_2	10931515	10935724
Af1364			-	-	-	-	-	-		Ciclev10007962m	scaffold_1	26026278	26032641
Af1366			-	-	-	-	-	-		Ciclev10022785m	scaffold_3	42456299	42460637
Af1367			-	-	-	-	-	-		Ciclev10022240m	scaffold_3	3643442	3647377
Af1369			-	-	-	-	-	-		Ciclev10008015m	scaffold_1	2551920	2555129
Af1370			-	-	-	-	-	-		Ciclev10009015m	scaffold_1	8822834	8826308	C_unshiu_00579:mRNA_6.1	C_unshiu_00579	46507	50108	Plasma membrane	AGI-01	56.590
Af1371			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Af1372			-	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305
Af1373			-	-	-	-	-	-		Ciclev10028814m	scaffold_8	1400755	1404988
Af1374			-	-	-	-	-	-		Ciclev10022450m	scaffold_3	39092285	39094629
Af1375			-	-	-	-	-	-		Ciclev10002846m	scaffold_5	36986113	36987382
Af1376			-	-	-	-	-	-		Ciclev10032383m	scaffold_4	428646	432345
Af1377			-	-	-	-	-	-		Ciclev10001143m	scaffold_5	32780339	32783349	C_unshiu_00224:mRNA_50.1	C_unshiu_00224	297837	300694	Seryl-tRNA synthetase (Serin-tRNA ligase)	AGI-09	70.624
Af1378			-	-	-	-	-	-		Ciclev10016040m	scaffold_2	35273688	35277907
Af1379			-	-	-	-	-	-		Ciclev10026357m	scaffold_7	3456105	3460607	C_unshiu_00301:mRNA_21.2	C_unshiu_00301	134429	138770	CBS domain-containing protein CBSX1, chloroplastic	AGI-02	68.467
Af1380			-	-	-	-	-	-		Ciclev10017148m	scaffold_2	34764294	34766390
Af1381			-	-	-	-	-	-		Ciclev10032242m	scaffold_4	24612463	24616531
Af1382			-	-	-	-	-	-		Ciclev10012786m	scaffold_6	24264177	24265636
Af1383			-	-	-	-	-	-		Ciclev10006002m	scaffold_9	4524401	4525971
Af1384			-	-	-	-	-	-
Af1385			-	-	-	-	-	-		Ciclev10002573m	scaffold_5	36106050	36109239
Af1386			-	-	-	-	-	-		Ciclev10028011m	scaffold_8	3117337	3120914
Af1387			-	-	-	-	-	-		Ciclev10032517m	scaffold_4	22676008	22680724
Af1388			-	-	-	-	-	-		Ciclev10000833m	scaffold_5	5309895	5315706
Af1389			-	-	-	-	-	-		Ciclev10020449m	scaffold_3	44565762	44567996
Af1390			-	-	-	-	-	-		Ciclev10021895m	scaffold_3	12254177	12259003
Af1391			-	-	-	-	-	-
Af1392			-	-	-	-	-	-		Ciclev10008930m	scaffold_1	1051155	1052947
Af1395			-	-	-	-	-	-		Ciclev10016067m	scaffold_2	35656845	35659383
Af1396			-	-	-	-	-	-		Ciclev10022545m	scaffold_3	4920662	4923421	C_unshiu_00520:mRNA_16.2	C_unshiu_00520	166824	167867	Ribosomal protein L19 family protein	AGI-05	28.041
Af1398			-	-	-	-	-	-		Ciclev10030393m	scaffold_8	7899376	7902959	C_unshiu_00887:mRNA_6.1	C_unshiu_00887	49120	57547	Hypothetical protein	AGI-08	57.551
Af1399			-	-	-	-	-	-		Ciclev10030527m	scaffold_4	19931958	19937465
Af1400			-	-	-	-	-	-		Ciclev10024198m	scaffold_3	30042140	30047495
Af1401			-	-	-	-	-	-		Ciclev10022652m	scaffold_3	43753763	43756161
Af1402			-	-	-	-	-	-		Ciclev10029042m	scaffold_8	7891925	7895996
Af1402b			-	-	-	-	-	-		Ciclev10007310m	scaffold_1	3941093	3948163
Af1403			-	-	-	-	-	-		Ciclev10002378m	scaffold_5	20818486	20821238
Af1404			-	-	-	-	-	-		Ciclev10014471m	scaffold_2	11418331	11422116
Af1405			-	-	-	-	-	-		Ciclev10032481m	scaffold_4	24503838	24505365	C_unshiu_00001:mRNA_238.1	C_unshiu_00001	1513811	1515209	FH interacting protein 1	AGI-07	83.026
Af1406			-	-	-	-	-	-		Ciclev10009324m	scaffold_1	329071	331103
Af1407			-	-	-	-	-	-		Ciclev10008782m	scaffold_1	28220637	28224080
Af1408			-	-	-	-	-	-		Ciclev10001178m	scaffold_5	41443667	41446709
Af1409			-	-	-	-	-	-		Ciclev10028349m	scaffold_8	1878986	1885505
Af1410			-	-	-	-	-	-		Ciclev10012700m	scaffold_6	25131256	25133522
Af1411			-	-	-	-	-	-		Ciclev10016646m	scaffold_2	23073191	23078049
Af1412			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Af1413			-	-	-	-	-	-		Ciclev10009114m	scaffold_1	4522022	4524821
Af1414			-	-	-	-	-	-		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor	AGI-03	50.895
Af1415			-	-	-	-	-	-		Ciclev10005717m	scaffold_9	2603134	2605405	C_unshiu_00366:mRNA_20.1	C_unshiu_00366	130993	132913	Transmembrane BAX inhibitor motif-containing protein 4	AGI-03	16.667
Af1416			-	-	-	-	-	-		Ciclev10029140m	scaffold_8	3738607	3741747	C_unshiu_00589:mRNA_10.1	C_unshiu_00589	131180	134227	Embryo defective 1273, putative isoform 1	AGI-08	68.834
Af1417			-	-	-	-	-	-
Af1418			-	-	-	-	-	-		Ciclev10017186m	scaffold_2	8060850	8062464
Af1419			-	-	-	-	-	-		Ciclev10000949m	scaffold_5	37529108	37534944
Af1420			-	-	-	-	-	-		Ciclev10032187m	scaffold_4	19762282	19765759
Af1421			-	-	-	-	-	-		Ciclev10005570m	scaffold_9	26047509	26048622
Af1422			-	-	-	-	-	-		Ciclev10002032m	scaffold_5	41609584	41613450
Af1423			-	-	-	-	-	-		Ciclev10028376m	scaffold_8	24832653	24835113
Af1424			-	-	-	-	-	-		Ciclev10008953m	scaffold_1	18688873	18690138	C_unshiu_00137:mRNA_44.1	C_unshiu_00137	354434	355481	CFE protein	AGI-01	43.613
Af1425			-	-	-	-	-	-		Ciclev10028562m	scaffold_8	994687	998018
Af1426			-	-	-	-	-	-		Ciclev10013333m	scaffold_6	20497289	20501732
Af1427			-	-	-	-	-	-		Ciclev10021942m	scaffold_3	36963026	36965935
Af1428			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Af1429			-	-	-	-	-	-		Ciclev10016644m	scaffold_2	390474	395075
Af1430			-	-	-	-	-	-		Ciclev10000887m	scaffold_5	38059021	38064414
Af1431			-	-	-	-	-	-		Ciclev10019463m	scaffold_3	13145188	13150117
Af1432			-	-	-	-	-	-		Ciclev10032069m	scaffold_4	23666784	23669594	C_unshiu_00001:mRNA_103.1	C_unshiu_00001	659252	662036	UDP-galactose/UDP-glucose transporter 5B	AGI-07	72.828
Af1433			-	-	-	-	-	-		Ciclev10001084m	scaffold_5	39480647	39484776
Af1434			-	-	-	-	-	-		Ciclev10002119m	scaffold_5	42348093	42350470
Af1435			-	-	-	-	-	-		Ciclev10026292m	scaffold_7	5747604	5748976
Af1436			-	-	-	-	-	-		Ciclev10014858m	scaffold_2	5975367	5977280
Af1437			-	-	-	-	-	-		Ciclev10002114m	scaffold_5	1474396	1479079	C_unshiu_00060:mRNA_37.1	C_unshiu_00060	309328	313345	Short-chain alcohol dehydrogenase	AGI-09	92.804
Af1438			-	-	-	-	-	-		Ciclev10031620m	scaffold_4	642157	644823
Af1439			-	-	-	-	-	-		Ciclev10003449m	scaffold_5	14888278	14889824
Af1440			-	-	-	-	-	-		Ciclev10014238m	scaffold_2	34817075	34823291
Af1441			-	-	-	-	-	-		Ciclev10015354m	scaffold_2	26435540	26438838
Af1442			-	-	-	-	-	-		Ciclev10032384m	scaffold_4	24610352	24612338
Af1443			-	-	-	-	-	-		Ciclev10011413m	scaffold_6	25048398	25053494	C_unshiu_00009:mRNA_3.1	C_unshiu_00009	15765	28846	Pentatricopeptide repeat-containing family protein	AGI-04	33.808
Af1444			-	-	-	-	-	-		Ciclev10009174m	scaffold_1	3665141	3672863
Af1445			-	-	-	-	-	-		Ciclev10016776m	scaffold_2	32880456	32882923
Af1446			-	-	-	-	-	-		Ciclev10016974m	scaffold_2	30435790	30437278
Af1447			-	-	-	-	-	-		Ciclev10031155m	scaffold_4	22802995	22807340	C_unshiu_00004:mRNA_35.1	C_unshiu_00004	275820	279748	Aldehyde dehydrogenase	AGI-07	70.744
Af1449			-	-	-	-	-	-		Ciclev10006216m	scaffold_9	6697572	6699157
Af1450			-	-	-	-	-	-		Ciclev10014769m	scaffold_2	6840743	6844063
Af1451			-	-	-	-	-	-		Ciclev10005663m	scaffold_9	3961723	3964463
Af1452			-	-	-	-	-	-		Ciclev10018443m	scaffold_3	5518457	5529974	C_unshiu_00900:mRNA_3.1	C_unshiu_00900	20186	30140	Pheromone-processing carboxypeptidase kex1	AGI-05	29.863
Af1453			-	-	-	-	-	-		Ciclev10023068m	scaffold_3	4663211	4664667	C_unshiu_01589:mRNA_7.1	C_unshiu_01589	29063	37936	Hypothetical protein	AGI-05	27.956
Af1454			-	-	-	-	-	-		Ciclev10029330m	scaffold_8	18813106	18814838
Af1455			-	-	-	-	-	-		Ciclev10012934m	scaffold_6	16927888	16930377
Af1456			-	-	-	-	-	-		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28	AGI-03	46.298
Af1457			-	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475
Af1458			-	-	-	-	-	-
Af1459			-	-	-	-	-	-		Ciclev10009503m	scaffold_1	12972605	12977393
Af1460			-	-	-	-	-	-		Ciclev10025995m	scaffold_7	8712253	8715371
Af1461			-	-	-	-	-	-		Ciclev10007728m	scaffold_1	2851521	2854493
Af1462			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658	C_unshiu_00133:mRNA_50.1	C_unshiu_00133	274230	284897	Hypothetical protein	AGI-04	37.527
Af1463			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Af1464			-	-	-	-	-	-		Ciclev10031253m	scaffold_4	3226868	3232418
Af1465			-	-	-	-	-	-		Ciclev10026722m	scaffold_7	8898626	8899984
Af1466			-	-	-	-	-	-		Ciclev10022406m	scaffold_3	2803785	2805325
Af1467			-	-	-	-	-	-		Ciclev10008651m	scaffold_1	24171632	24175378	C_unshiu_00047:mRNA_19.1	C_unshiu_00047	116658	120038	Putative amino acid permease 7	AGI-01	29.784
Af1468			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019
Af1469			-	-	-	-	-	-		Ciclev10028130m	scaffold_8	20779069	20782853
Af1470			-	-	-	-	-	-		Ciclev10023233m	scaffold_3	46380264	46381057	No					AGI-05	62.767
Af1471			-	-	-	-	-	-		Ciclev10022208m	scaffold_3	9747775	9750640
Af1472			-	-	-	-	-	-		Ciclev10026852m	scaffold_7	17420861	17422787
Af1474			-	-	-	-	-	-		Ciclev10031886m	scaffold_4	21243085	21244983
Af1475			-	-	-	-	-	-		Ciclev10012178m	scaffold_6	14868821	14872700
Af1476			-	-	-	-	-	-		Ciclev10009256m	scaffold_1	3862913	3866838
Af1477			-	-	-	-	-	-		Ciclev10016057m	scaffold_2	33561487	33563802
Af1478			-	-	-	-	-	-		Ciclev10009725m	scaffold_1	4534161	4535260
Af1479			-	-	-	-	-	-		Ciclev10002189m	scaffold_5	32699610	32702689
Af1480			-	-	-	-	-	-		Ciclev10026531m	scaffold_7	782313	784526
Af1481			-	-	-	-	-	-		Ciclev10009202m	scaffold_1	1797060	1800274
Af1482			-	-	-	-	-	-		Ciclev10001945m	scaffold_5	36550507	36552800	C_unshiu_00657:mRNA_2.2	C_unshiu_00657	28541	30831	DRE binding transcription factor	AGI-09	49.255
Af1483			-	-	-	-	-	-		Ciclev10026740m	scaffold_7	5523075	5524475
Af1484			-	-	-	-	-	-		Ciclev10023136m	scaffold_3	42882909	42885640
Af1485a			-	-	-	-	-	-		Ciclev10026552m	scaffold_7	1381761	1382875
Af1485b			-	-	-	-	-	-		Ciclev10012181m	scaffold_6	8936705	8942681
Af1486			-	-	-	-	-	-		Ciclev10029576m	scaffold_8	17510926	17513265	C_unshiu_00962:mRNA_1.1	C_unshiu_00962	434	2684	Prefoldin subunit 4	AGI-08	59.562
Af1487			-	-	-	-	-	-		Ciclev10028531m	scaffold_8	18155481	18157658	C_unshiu_00251:mRNA_22.1	C_unshiu_00251	205180	207288	DnaJ	AGI-08	47.330
Af1488			-	-	-	-	-	-		Ciclev10020747m	scaffold_3	4959826	4964659
Af1489			-	-	-	-	-	-		Ciclev10016302m	scaffold_2	36078501	36081245
Af1490			-	-	-	-	-	-		Ciclev10005113m	scaffold_9	4742709	4745030
Af1491a			-	-	-	-	-	-		Ciclev10017207m	scaffold_2	29258052	29260162
Af1491b			-	-	-	-	-	-		Ciclev10029091m	scaffold_8	21777981	21780912
Af1492			-	-	-	-	-	-		Ciclev10031173m	scaffold_4	23365418	23370600
Af1493			-	-	-	-	-	-
Af1494			-	-	-	-	-	-		Ciclev10017510m	scaffold_2	29644507	29646280
Af1495			-	-	-	-	-	-		Ciclev10032113m	scaffold_4	22523092	22528307	C_unshiu_00004:mRNA_77.1	C_unshiu_00004	548746	553542	UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3	AGI-07	69.544
Af1496			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Af1497			-	-	-	-	-	-		Ciclev10018482m	scaffold_3	45704361	45713084
Af1498			-	-	-	-	-	-		Ciclev10006723m	scaffold_9	6766349	6768025	C_unshiu_00307:mRNA_26.2	C_unshiu_00307	212314	218407	Heterogeneous nuclear ribonucleoprotein 1	AGI-03	46.274
Af1499			-	-	-	-	-	-		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein	AGI-04
Af1500			-	-	-	-	-	-		Ciclev10022594m	scaffold_3	16957427	16959735
Af1501			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Af1502			-	-	-	-	-	-		Ciclev10015770m	scaffold_2	23243926	23246266
Af1503			-	-	-	-	-	-		Ciclev10009155m	scaffold_1	27943663	27947071
Af1504			-	-	-	-	-	-		Ciclev10002895m	scaffold_5	2461406	2462911
Af1505			-	-	-	-	-	-		Ciclev10031326m	scaffold_4	1531262	1535758	C_unshiu_00012:mRNA_96.1	C_unshiu_00012	704342	708725	Multiple inositol polyphosphate phosphatase 1	AGI-07	12.283
Af1506			-	-	-	-	-	-		Ciclev10019034m	scaffold_3	8914744	8921411
Af1507a			-	-	-	-	-	-		Ciclev10017265m	scaffold_2	9454517	9456360
Af1507b			-	-	-	-	-	-		Ciclev10025301m	scaffold_7	21098230	21102921
Af1508			-	-	-	-	-	-		Ciclev10011580m	scaffold_6	21983044	21991500	C_unshiu_00079:mRNA_48.1	C_unshiu_00079	328854	336213	Stomatal closure-related actin-binding protein 3	AGI-04	1.342
Af1509			-	-	-	-	-	-		Ciclev10032314m	scaffold_4	23564251	23568956	C_unshiu_00001:mRNA_83.3	C_unshiu_00001	555659	560336	Hypersensitive-induced response protein 1	AGI-07	73.796
Af1510			-	-	-	-	-	-		Ciclev10010950m	scaffold_6	16871274	16876833
Af1511			-	-	-	-	-	-		Ciclev10001383m	scaffold_5	32759553	32763763
Af1512			-	-	-	-	-	-		Ciclev10008994m	scaffold_1	9300782	9304559
Af1513			-	-	-	-	-	-		Ciclev10006024m	scaffold_9	29523786	29526379	C_unshiu_00056:mRNA_24.1	C_unshiu_00056	181282	183151	40S ribosomal protein S10	AGI-03	63.545
Af1514			-	-	-	-	-	-		Ciclev10026347m	scaffold_7	11203967	11205525
Af1515			-	-	-	-	-	-		Ciclev10027760m	scaffold_8	20838053	20844872	C_unshiu_00883:mRNA_4.1	C_unshiu_00883	60978	104832	Argonaute 1	AGI-08	40.438
Af1516			-	-	-	-	-	-		Ciclev10025736m	scaffold_7	15872236	15875783
Af1517			-	-	-	-	-	-		Ciclev10002357m	scaffold_5	31091782	31094489
Af1518			-	-	-	-	-	-		Ciclev10029379m	scaffold_8	21919215	21923184
Af1519			-	-	-	-	-	-		Ciclev10012646m	scaffold_6	23416404	23418629
Af1520			-	-	-	-	-	-		Ciclev10015124m	scaffold_2	7360380	7367946
Af1521			-	-	-	-	-	-		Ciclev10004680m	scaffold_9	9799746	9804461
Af1522			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Af1523			-	-	-	-	-	-		Ciclev10031240m	scaffold_4	6231492	6235447
Af1524			-	-	-	-	-	-		Ciclev10025757m	scaffold_7	9325319	9327565
Af1525			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Af1526			-	-	-	-	-	-		Ciclev10001454m	scaffold_5	38852547	38855263
Af1527			-	-	-	-	-	-		Ciclev10033122m	scaffold_4	17175041	17177917
Af1528			-	-	-	-	-	-		Ciclev10009892m	scaffold_1	1676368	1677018
Af1529			-	-	-	-	-	-		Ciclev10005711m	scaffold_9	21228791	21231253
Af1530			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Af1531			-	-	-	-	-	-		Ciclev10008796m	scaffold_1	4984340	4987674
Af1532			-	-	-	-	-	-		Ciclev10026374m	scaffold_7	3988366	3989679
Af1533			-	-	-	-	-	-		Ciclev10009600m	scaffold_1	22118203	22120791
Af1534			-	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Af1535			-	-	-	-	-	-		Ciclev10007633m	scaffold_1	23814115	23817728
Af1536			-	-	-	-	-	-		Ciclev10021945m	scaffold_3	6113049	6116055
Af1537			-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377
Af1538			-	-	-	-	-	-		Ciclev10002528m	scaffold_5	33921984	33926087
Af1539			-	-	-	-	-	-		Ciclev10016688m	scaffold_2	10097308	10100347
Af1540			-	-	-	-	-	-		Ciclev10006242m	scaffold_9	477388	478920
Af1541			-	-	-	-	-	-		Ciclev10031567m	scaffold_4	10510018	10517939
Af1542			-	-	-	-	-	-		Ciclev10015820m	scaffold_2	10424779	10427904
Af1543			-	-	-	-	-	-		Ciclev10022165m	scaffold_3	42180650	42183843
Af1544			-	-	-	-	-	-		Ciclev10026596m	scaffold_7	2622969	2624754
Af1545			-	-	-	-	-	-		Ciclev10032524m	scaffold_4	2153718	2155194
Af1546			-	-	-	-	-	-		Ciclev10016821m	scaffold_2	12406078	12408794
Af1547			-	-	-	-	-	-		Ciclev10005907m	scaffold_9	3864764	3867933
Af1548			-	-	-	-	-	-		Ciclev10012731m	scaffold_6	25114213	25116604
Af1549			-	-	-	-	-	-		Ciclev10009920m	scaffold_1	2184513	2186967
Af1551			-	-	-	-	-	-		Ciclev10008489m	scaffold_1	6494973	6502196
Af1552			-	-	-	-	-	-		Ciclev10005340m	scaffold_9	30527060	30531535
Af1553			-	-	-	-	-	-		Ciclev10023028m	scaffold_3	45812589	45815067
Af1554			-	-	-	-	-	-		Ciclev10009386m	scaffold_1	23753759	23756754	C_unshiu_00080:mRNA_59.1	C_unshiu_00080	491826	492778	Protein CWC15	AGI-01	28.775
Af1555			-	-	-	-	-	-		Ciclev10029189m	scaffold_8	24502070	24504031
Af1556			-	-	-	-	-	-		Ciclev10026643m	scaffold_7	11107041	11109191	C_unshiu_01501:mRNA_6.1	C_unshiu_01501	57291	59154	Lactoylglutathione lyase/glyoxalase I family protein	AGI-02	11.728
Af1558			-	-	-	-	-	-		Ciclev10005504m	scaffold_9	29608462	29612474
Af1559			-	-	-	-	-	-		Ciclev10005333m	scaffold_9	2211862	2215512
Af1560			-	-	-	-	-	-
Af1561			-	-	-	-	-	-		Ciclev10009643m	scaffold_1	2420324	2423040
Af1562			-	-	-	-	-	-		Ciclev10022384m	scaffold_3	548048	549062
Af1562b			-	-	-	-	-	-		Ciclev10026749m	scaffold_7	1530713	1532413
Af1564			-	-	-	-	-	-		Ciclev10015917m	scaffold_2	26206635	26210648
Af1565			-	-	-	-	-	-		Ciclev10008210m	scaffold_1	21875022	21879839
Af1566			-	-	-	-	-	-		Ciclev10011855m	scaffold_6	15346135	15348332
Af1567			-	-	-	-	-	-		Ciclev10016663m	scaffold_2	22759341	22763218
Af1568			-	-	-	-	-	-						C_unshiu_00591:mRNA_15.1	C_unshiu_00591	108974	112318	Putative elongation factor 2-like	AGI-01	24.954
Af1569			-	-	-	-	-	-		Ciclev10031754m	scaffold_4	23192472	23198396
Af1570			-	-	-	-	-	-		Ciclev10009899m	scaffold_1	4601588	4603705
Af1571			-	-	-	-	-	-		Ciclev10010323m	scaffold_1	24533064	24536628
Af1572			-	-	-	-	-	-		Ciclev10027884m	scaffold_8	22084232	22091205
Af1573			-	-	-	-	-	-		Ciclev10026597m	scaffold_7	11163359	11165487
Af1574			-	-	-	-	-	-		Ciclev10011911m	scaffold_6	14444651	14447199
Af1575			-	-	-	-	-	-		Ciclev10029551m	scaffold_8	17524835	17526697	C_unshiu_02252:mRNA_4.1	C_unshiu_02252	7997	9032	Photosystem II reaction center W protein	AGI-08	56.724
Af1576			-	-	-	-	-	-		Ciclev10018636m	scaffold_3	41566338	41572373	No					AGI-05	47.986
Af1577			-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239
Af1578			-	-	-	-	-	-		Ciclev10023834m	scaffold_3	48016069	48017656
Af1579			-	-	-	-	-	-		Ciclev10006023m	scaffold_9	75348	78181
Af1580			-	-	-	-	-	-		Ciclev10016368m	scaffold_2	35013848	35015439	C_unshiu_00048:mRNA_76.1	C_unshiu_00048	512885	514767	NAD(P)-binding Rossmann-fold superfamily protein isoform 2	AGI-06	20.932
Af1581			-	-	-	-	-	-		Ciclev10024663m	scaffold_3	27092414	27093612
Af1583			-	-	-	-	-	-		Ciclev10006246m	scaffold_9	29549722	29551403
Af1584			-	-	-	-	-	-		Ciclev10026332m	scaffold_7	17424218	17426071
Af1585			-	-	-	-	-	-		Ciclev10026687m	scaffold_7	3462353	3463444
Af1586			-	-	-	-	-	-		Ciclev10005733m	scaffold_9	23119502	23122347	C_unshiu_00148:mRNA_17.1	C_unshiu_00148	145165	147922	Glycoprotein family protein	AGI-03	63.545
Af1587			-	-	-	-	-	-		Ciclev10022920m	scaffold_3	39483387	39486219
Af1588			-	-	-	-	-	-		Ciclev10028841m	scaffold_8	6750503	6754741
Af1589			-	-	-	-	-	-		Ciclev10005524m	scaffold_9	30995129	30999295	C_unshiu_00003:mRNA_80.1	C_unshiu_00003	574672	576940	Peroxisomal 2,4-dienoyl-CoA reductase	AGI-03	77.744
Af1590			-	-	-	-	-	-		Ciclev10017502m	scaffold_2	9348292	9351074
Af1591			-	-	-	-	-	-		Ciclev10030412m	scaffold_8	23674833	23676979
Af1592			-	-	-	-	-	-		Ciclev10021425m	scaffold_3	37597624	37600961
Af1593			-	-	-	-	-	-		Ciclev10015971m	scaffold_2	27738397	27741912	C_unshiu_00745:mRNA_8.1	C_unshiu_00745	82265	85742	Prolactin regulatory element-binding protein, putative	AGI-06	61.501
Af1594			-	-	-	-	-	-		Ciclev10018838m	scaffold_3	4401159	4407506
Af1595			-	-	-	-	-	-		Ciclev10022641m	scaffold_3	9040181	9045543
Af1596			-	-	-	-	-	-		Ciclev10002542m	scaffold_5	37964989	37967950
Af1597			-	-	-	-	-	-		Ciclev10016480m	scaffold_2	13482005	13485923
Af1600			-	-	-	-	-	-		Ciclev10013134m	scaffold_6	22758027	22760875	C_unshiu_00038:mRNA_51.4	C_unshiu_00038	305110	307864	Negatively light-regulated protein	AGI-04	5.122
Af1601			-	-	-	-	-	-		Ciclev10026686m	scaffold_7	4214423	4217517
Af1602			-	-	-	-	-	-		Ciclev10017370m	scaffold_2	13350082	13351899
Af1603			-	-	-	-	-	-		Ciclev10022774m	scaffold_3	42974947	42976794
Af1604			-	-	-	-	-	-		Ciclev10019587m	scaffold_3	47139756	47144124
Af1605			-	-	-	-	-	-		Ciclev10021314m	scaffold_3	26297949	26304739
Af1606			-	-	-	-	-	-		Ciclev10021248m	scaffold_3	24893551	24898675
Af1608			-	-	-	-	-	-		Ciclev10001692m	scaffold_5	42294270	42295612
Af1609			-	-	-	-	-	-		Ciclev10014451m	scaffold_2	24533044	24538470
Af1611			-	-	-	-	-	-		Ciclev10005702m	scaffold_9	22712688	22715627
Af1612			-	-	-	-	-	-		Ciclev10018748m	scaffold_3	30784119	30796076
Af1613			-	-	-	-	-	-
Af1614			-	-	-	-	-	-		Ciclev10030819m	scaffold_4	204633	209475
Af1615			-	-	-	-	-	-		Ciclev10001102m	scaffold_5	38108661	38114412
Af1616			-	-	-	-	-	-		Ciclev10014317m	scaffold_2	26817593	26820324
Af1617			-	-	-	-	-	-		Ciclev10014836m	scaffold_2	434537	439663
Af1618			-	-	-	-	-	-		Ciclev10013090m	scaffold_6	14397047	14399928
Af1619			-	-	-	-	-	-		Ciclev10026784m	scaffold_7	1608634	1610659	C_unshiu_00209:mRNA_18.2	C_unshiu_00209	147009	148975	Thioredoxin h	AGI-02	73.759
Af1620			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Af1621			-	-	-	-	-	-		Ciclev10004420m	scaffold_9	15626737	15638532
Af1622			-	-	-	-	-	-		Ciclev10008520m	scaffold_1	18117264	18119451	C_unshiu_00187:mRNA_23.3	C_unshiu_00187	141733	143877	Protochlorophyllide reductase, chloroplastic	AGI-01	54.754
Af1623			-	-	-	-	-	-		Ciclev10032683m	scaffold_4	612480	615318	C_unshiu_01079:mRNA_2.2	C_unshiu_01079	3136	5814	Thylakoid lumenal 15 kDa protein 1, chloroplastic	AGI-07	7.907
Af1624			-	-	-	-	-	-		Ciclev10007512m	scaffold_1	24924416	24934675
Af1625			-	-	-	-	-	-		Ciclev10019825m	scaffold_3	48944261	48947832
Af1626			-	-	-	-	-	-		Ciclev10020385m	scaffold_3	47202109	47206941
Af1627			-	-	-	-	-	-		Ciclev10012518m	scaffold_6	14194454	14196761
Af1628			-	-	-	-	-	-		Ciclev10001249m	scaffold_5	34809345	34813138
Af1629			-	-	-	-	-	-		Ciclev10012332m	scaffold_6	2969527	2973147	C_unshiu_00060:mRNA_62.1	C_unshiu_00060	539807	543307	Mitochondrial carnitine/acylcarnitine carrier protein CACL	AGI-07	39.420
Af1630			-	-	-	-	-	-		Ciclev10006127m	scaffold_9	4702402	4704790
Af1631			-	-	-	-	-	-		Ciclev10015794m	scaffold_2	34609196	34614203
Af1632			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Af1633			-	-	-	-	-	-		Ciclev10020304m	scaffold_3	3963024	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43	AGI-07	67.201
Af1635			-	-	-	-	-	-		Ciclev10020874m	scaffold_3	18517469	18520307
Af1636			-	-	-	-	-	-		Ciclev10016216m	scaffold_2	6611813	6619116	C_unshiu_00072:mRNA_53.1	C_unshiu_00072	416072	423443	Zinc transporter ZTP29	AGI-06	150.228
Af1637			-	-	-	-	-	-		Ciclev10008007m	scaffold_1	18896164	18901623
Af1638			-	-	-	-	-	-		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin	AGI-03	34.554
Af1639			-	-	-	-	-	-		Ciclev10012116m	scaffold_6	23462487	23466580	C_unshiu_00098:mRNA_36.1	C_unshiu_00098	239683	243712	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1	AGI-04	6.635
Af1640			-	-	-	-	-	-		Ciclev10005272m	scaffold_9	29342369	29345806
Af1641			-	-	-	-	-	-		Ciclev10021239m	scaffold_3	30721842	30725003
Af1642			-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515
Af1643			-	-	-	-	-	-		Ciclev10021001m	scaffold_3	3802387	3805494
Af1644			-	-	-	-	-	-		Ciclev10005467m	scaffold_9	31105158	31108119
Af1645			-	-	-	-	-	-		Ciclev10000427m	scaffold_5	2472805	2477375	C_unshiu_00127:mRNA_11.1	C_unshiu_00127	52207	62775	Class I (E and Q) tRNA synthetase	AGI-09	90.878
Af1646			-	-	-	-	-	-		Ciclev10012239m	scaffold_6	25121919	25125183
Af1647			-	-	-	-	-	-		Ciclev10023615m	scaffold_3	49533318	49539442
Af1648			-	-	-	-	-	-		Ciclev10002024m	scaffold_5	34558362	34564638
Af1650			-	-	-	-	-	-		Ciclev10029248m	scaffold_8	19272551	19276355
Af1651			-	-	-	-	-	-		Ciclev10026767m	scaffold_7	7313006	7315653
Af1653			-	-	-	-	-	-		Ciclev10002255m	scaffold_5	35776946	35779494
Af1654			-	-	-	-	-	-		Ciclev10020789m	scaffold_3	31133566	31137650
Af1655			-	-	-	-	-	-		Ciclev10020140m	scaffold_3	48348138	48351697
Af1656			-	-	-	-	-	-		Ciclev10031396m	scaffold_4	2404353	2407969
Af1657			-	-	-	-	-	-		Ciclev10032070m	scaffold_4	22584852	22588013
Af1658			-	-	-	-	-	-		Ciclev10002760m	scaffold_5	26168594	26171673
Af1659			-	-	-	-	-	-		Ciclev10012047m	scaffold_6	21912438	21917736
Af1660			-	-	-	-	-	-		Ciclev10015583m	scaffold_2	9164804	9166682
Af1662			-	-	-	-	-	-		Ciclev10021522m	scaffold_3	40116213	40124281
Af1663			-	-	-	-	-	-		Ciclev10031595m	scaffold_4	21841321	21845493
Af1666			-	-	-	-	-	-		Ciclev10019037m	scaffold_3	3024295	3028262
Af1667			-	-	-	-	-	-		Ciclev10001644m	scaffold_5	42455994	42459424
Af1668			-	-	-	-	-	-		Ciclev10016828m	scaffold_2	4660424	4661352
Af1669			-	-	-	-	-	-		Ciclev10021541m	scaffold_3	44371081	44373131
Af1670			-	-	-	-	-	-		Ciclev10011668m	scaffold_6	17867902	17874268
Af1671			-	-	-	-	-	-		Ciclev10016129m	scaffold_2	21057080	21059316
Af1672			-	-	-	-	-	-		Ciclev10004406m	scaffold_9	1933927	1940744
Af1673			-	-	-	-	-	-		Ciclev10005691m	scaffold_9	29749063	29751434
Af1674			-	-	-	-	-	-		Ciclev10025184m	scaffold_7	6639833	6644164
Af1675			-	-	-	-	-	-		Ciclev10024649m	scaffold_3	2793365	2795811
Af1676			-	-	-	-	-	-		Ciclev10021429m	scaffold_3	41427221	41432461
Af1677			-	-	-	-	-	-		Ciclev10015358m	scaffold_2	15485437	15488234
Af1678			-	-	-	-	-	-		Ciclev10022810m	scaffold_3	43192762	43194352
Af1679			-	-	-	-	-	-		Ciclev10021896m	scaffold_3	4260126	4262819	C_unshiu_00186:mRNA_34.1	C_unshiu_00186	288266	290432	Adenylate kinase	AGI-05	29.035
Af1680			-	-	-	-	-	-		Ciclev10032474m	scaffold_4	20917509	20920961
Af1681			-	-	-	-	-	-		Ciclev10015215m	scaffold_2	23163673	23168238
Af1682			-	-	-	-	-	-		Ciclev10016706m	scaffold_2	20153460	20156597
Af1683			-	-	-	-	-	-		Ciclev10016632m	scaffold_2	475374	478428
Af1684			-	-	-	-	-	-		Ciclev10022811m	scaffold_3	12901463	12904143
Af1685			-	-	-	-	-	-		Ciclev10023782m	scaffold_3	40086985	40089114	C_unshiu_00335:mRNA_9.1	C_unshiu_00335	76164	77436	Hypothetical protein	AGI-05	56.481
Af1686			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Af1687			-	-	-	-	-	-
Af1688			-	-	-	-	-	-		Ciclev10001114m	scaffold_5	42875803	42879044
Af1689			-	-	-	-	-	-		Ciclev10015519m	scaffold_2	28761649	28766750
Af1690			-	-	-	-	-	-		Ciclev10032651m	scaffold_4	23923757	23925178	C_unshiu_00001:mRNA_137.1	C_unshiu_00001	920379	924128	Hypothetical protein	AGI-07	77.752
Af1691			-	-	-	-	-	-		Ciclev10006090m	scaffold_9	627373	629617
Af1692			-	-	-	-	-	-		Ciclev10014767m	scaffold_2	691427	698055
Af1693			-	-	-	-	-	-		Ciclev10016657m	scaffold_2	32069149	32072079	C_unshiu_00027:mRNA_31.2	C_unshiu_00027	205885	208484	DERLIN-2.2 isoform 1	AGI-06	35.794
Af1694			-	-	-	-	-	-		Ciclev10025863m	scaffold_7	2703580	2705194
Af1695			-	-	-	-	-	-		Ciclev10008653m	scaffold_1	24619126	24621953
Af1697			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Af1698			-	-	-	-	-	-		Ciclev10016574m	scaffold_2	6880111	6883726
Af1699			-	-	-	-	-	-		Ciclev10014381m	scaffold_2	6927081	6932080
Af1700			-	-	-	-	-	-		Ciclev10004322m	scaffold_9	18502293	18505531	C_unshiu_00138:mRNA_34.1	C_unshiu_00138	182719	186200	Putative receptor protein kinase TMK1	AGI-03	54.060
Af1752			-	-	-	-	-	-		Ciclev10009349m	scaffold_1	177116	180417
Af1838			-	-	-	-	-	-		Ciclev10001534m	scaffold_5	6599711	6604334
Af1883			-	-	-	-	-	-		Ciclev10008999m	scaffold_1	25255758	25259340
Af2001			-	-	-	-	-	-		Ciclev10007327m	scaffold_1	25337687	25347002
Af2022			-	-	-	-	-	-		Ciclev10002788m	scaffold_5	9976757	9977512
Af2042			-	-	-	-	-	-		Ciclev10008181m	scaffold_1	3521485	3525524
Af2075			-	-	-	-	-	-		Ciclev10032164m	scaffold_4	22801203	22802540
Af2143			-	-	-	-	-	-		Ciclev10010213m	scaffold_1	149283	154945
Af2250			-	-	-	-	-	-		Ciclev10000615m	scaffold_5	43060442	43066562
Af2318			-	-	-	-	-	-		Ciclev10008753m	scaffold_1	25227978	25233897
Af2344			-	-	-	-	-	-		Ciclev10002506m	scaffold_5	43051579	43053394
Af2392			-	-	-	-	-	-		Ciclev10002611m	scaffold_5	39204025	39206398
Af2525			-	-	-	-	-	-
Af2558			-	-	-	-	-	-		Ciclev10022119m	scaffold_3	49740454	49743754
Af2596			-	-	-	-	-	-		Ciclev10002840m	scaffold_5	38154975	38155769	C_unshiu_00319:mRNA_29.1	C_unshiu_00319	189073	189599	Basic blue protein	AGI-09	57.830
Af2704			-	-	-	-	-	-		Ciclev10012216m	scaffold_6	21132427	21135018
Af2786			-	-	-	-	-	-		Ciclev10029628m	scaffold_8	20547180	20549390
Af2820			-	-	-	-	-	-		Ciclev10000836m	scaffold_5	42437643	42442753
Af2871			-	-	-	-	-	-		Ciclev10019876m	scaffold_3	30066339	30070903
Af2893			-	-	-	-	-	-		Ciclev10025356m	scaffold_7	1739443	1743149	C_unshiu_01334:mRNA_6.1	C_unshiu_01334	25863	29359	Putative mitochondrial chaperone BCS1-B	AGI-02	73.779
Af3016			-	-	-	-	-	-		Ciclev10025718m	scaffold_7	7346031	7350895
Af3017			-	-	-	-	-	-		Ciclev10031492m	scaffold_4	24401841	24406470	C_unshiu_00001:mRNA_224.1	C_unshiu_00001	1415778	1420221	Serine/threonine-protein kinase PBS1	AGI-07	83.217
Af3023			-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative	AGI-02	21.337
Af3039			-	-	-	-	-	-		Ciclev10000497m	scaffold_5	8573281	8583459
Af3114			-	-	-	-	-	-
Af3132			-	-	-	-	-	-		Ciclev10012712m	scaffold_6	3654839	3656896
Af3142			-	-	-	-	-	-		Ciclev10032672m	scaffold_4	9412864	9416686
Af3188			-	-	-	-	-	-		Ciclev10007898m	scaffold_1	448785	452457
Af3215			-	-	-	-	-	-		Ciclev10009264m	scaffold_1	25322078	25323384
Af3218			-	-	-	-	-	-		Ciclev10005768m	scaffold_9	27154799	27158226
Af3244			-	-	-	-	-	-		Ciclev10002793m	scaffold_5	8435123	8435971
Af3288			-	-	-	-	-	-		Ciclev10008476m	scaffold_1	385469	388179
Af3392			-	-	-	-	-	-		Ciclev10013692m	scaffold_6	18248777	18250446
Af3400			-	-	-	-	-	-		Ciclev10002005m	scaffold_5	43068093	43070554
Af3466			-	-	-	-	-	-
Af3471			-	-	-	-	-	-		Ciclev10002308m	scaffold_5	12201836	12206033
Af3599			-	-	-	-	-	-		Ciclev10008985m	scaffold_1	28330810	28332669
Af3712			-	-	-	-	-	-
Af3785			-	-	-	-	-	-		Ciclev10025208m	scaffold_7	5932664	5935568
Af3808			-	-	-	-	-	-		Ciclev10002466m	scaffold_5	176650	180562
Af3822			-	-	-	-	-	-		Ciclev10004695m	scaffold_9	5494254	5497030	C_unshiu_00164:mRNA_13.1	C_unshiu_00164	74059	75936	Phosphate transporter	AGI-03	44.864
Al0001			-	-	-	-	-	-						C_unshiu_00424:mRNA_23.1	C_unshiu_00424	213541	217268	Hypothetical protein	AGI-03	62.228			JtR-031	17.616
Al0003	Al0003.2		-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860	C_unshiu_01778:mRNA_2.1	C_unshiu_01778	27362	28139	Dehydrin COR15	AGI-05	49.499
Al0004			-	-	-	-	-	-		Ciclev10011410m	scaffold_6	24157115	24161063
Al0005			-	-	-	-	-	-		Ciclev10016064m	scaffold_2	32032365	32035492
Al0006			-	-	-	-	-	-		Ciclev10030549m	scaffold_4	2823200	2830227
Al0007			-	-	-	-	-	-
Al0008			-	-	-	-	-	-		Ciclev10001908m	scaffold_5	40317721	40321609	C_unshiu_00054:mRNA_1.1	C_unshiu_00054	5765	8674	26S proteasome non-ATPase regulatory subunit 14									SA-09	50.699
Al0009			-	-	-	-	-	-		Ciclev10004753m	scaffold_9	3688973	3692790
Al0011	Al0010.2		-	-	-	-	-	-		Ciclev10012654m	scaffold_6	10316999	10318328	C_unshiu_00806:mRNA_1.2	C_unshiu_00806	21305	22892	Polyubiquitin	AGI-03	46.768
Al0012			-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0013	Al0012.2		-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0014			O	-	-	-	-	-	SI058,SI153,SI312	Ciclev10008225m	scaffold_1	1070373	1072218	C_unshiu_00005:mRNA_43.1	C_unshiu_00005	281165	283012	CBL-interacting serine/threonine-protein kinase 20	AGI-01	97.525							RP-01	3.295
Al0015			-	-	-	-	-	-		Ciclev10033914m	scaffold_4	25071431	25077010
Al0016			-	-	-	-	-	-		Ciclev10002413m	scaffold_5	2189584	2190474
Al0017			-	-	-	-	-	-
Al0018			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin									RP-08	23.447
Al0019			-	-	-	-	-	-		Ciclev10012798m	scaffold_6	11739634	11741636
Al0020		OOthers	-	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase			KmG-04
Al0021			-	-	-	-	-	-		Ciclev10028327m	scaffold_8	5692075	5697304
Al0022			-	-	-	-	-	-		Ciclev10011465m	scaffold_6	25364317	25368608	C_unshiu_00009:mRNA_62.1	C_unshiu_00009	346583	350755	Mitochondrial-processing peptidase subunit alpha									SA-09	42.503
Al0023			-	-	-	-	-	-		Ciclev10014721m	scaffold_2	27479907	27486732
Al0024.2			-	-	-	-	-	-		Ciclev10020911m	scaffold_3	37863407	37865625
Al0025			-	-	-	-	-	-		Ciclev10020434m	scaffold_3	48584455	48588112
Al0027			-	-	-	-	-	-		Ciclev10009909m	scaffold_1	24787600	24788444
Al0028			-	-	-	-	-	-		Ciclev10016123m	scaffold_2	11604956	11606340	C_unshiu_00957:mRNA_11.1	C_unshiu_00957	38508	39910	Xyloglucan endotransglucosylase/hydrolase protein A									RP-06.1	28.573
Al0029		Bno homozygous cultivar with minor allele	O	-	-	-	-	-						C_unshiu_00305:mRNA_10.1	C_unshiu_00305	69938	73026	Basic helix-loop-helix transcription factor	AGI-01	37.357			JtR-01S	50.000
Al0030			-	-	-	-	-	-		Ciclev10032368m	scaffold_4	18423063	18426424
Al0031			-	-	-	-	-	-		Ciclev10000645m	scaffold_5	13531937	13535930
Al0032			O	-	-	-	-	-		Ciclev10020029m	scaffold_3	50841051	50845732
Al0034			-	-	-	-	-	-		Ciclev10032830m	scaffold_4	17944545	17945441
Al0035			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Al0036			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Al0037			-	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0037.2	Al0037.k		O	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0038			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Al0039			-	-	-	-	-	-						C_unshiu_00018:mRNA_107.1	C_unshiu_00018	723553	725648	Bifunctional protein FolD	AGI-05	95.305
Al0201		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10014752m	scaffold_2	32780830	32782885	C_unshiu_00153:mRNA_49.1	C_unshiu_00153	346248	348256	Armadillo/beta-catenin-like repeat family protein, expressed
Al0202			-	-	-	-	-	-		Ciclev10005495m	scaffold_9	12740846	12745213
Al0203			-	-	-	-	-	-		Ciclev10000021m	scaffold_5	39593309	39602756
Al0204			-	-	-	-	-	-		Ciclev10008298m	scaffold_1	275263	280936	C_unshiu_00003:mRNA_150.2	C_unshiu_00003	1127884	1133567	Myosin heavy chain-like protein					JtR-09S	5.527
Al0205			-	-	-	-	-	-		Ciclev10028714m	scaffold_8	324145	327011
Al0206		AAvailable marker	-	-	-	-	O	O		Ciclev10032727m	scaffold_4	12309480	12311438	C_unshiu_00365:mRNA_26.1	C_unshiu_00365	192643	194502	NADPH-dependent codeinone reductase-like protein	AGI-07	38.565			JtR-07	52.611			RP-07	29.935
Al0207		OOthers	-	-	-	-	-	-		Ciclev10020027m	scaffold_3	4366802	4370111	C_unshiu_00186:mRNA_18.1	C_unshiu_00186	178635	181547	SNF1-related protein kinase regulatory subunit gamma-1	AGI-09	84.537			JtR-09S	9.929
Al0208			O	-	-	-	-	-		Ciclev10001155m	scaffold_5	40597272	40598741
Al0209		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295	C_unshiu_00548:mRNA_21.1	C_unshiu_00548	168151	169460	Hypothetical protein			KmG-01	37.230	JtR-01S	88.382
Al0210		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382	C_unshiu_00166:mRNA_28.1	C_unshiu_00166	205256	208771	Eukaryotic initiation factor 4A-10			KmG-02	34.998	JtR-02	15.126
Al0212			O	-	-	-	-	-		Ciclev10026128m	scaffold_7	5258045	5259521	C_unshiu_00288:mRNA_19.1	C_unshiu_00288	142758	144183	Mitochondrial uncoupling protein 3			KmG-02	43.821	JtR-02	30.507			RP-08
Al0213			-	-	-	-	-	-
Al0215		OOthers	-	-	-	-	-	-		Ciclev10007304m	scaffold_1	21918726	21922966	C_unshiu_00595:mRNA_18.1	C_unshiu_00595	85575	88636	Disease resistance protein	AGI-01	38.255
Al0216			-	-	-	-	-	-		Ciclev10007632m	scaffold_1	7359982	7369305
Al0217		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI350	Ciclev10022061m	scaffold_3	1203357	1206483	No							KmG-05S		JtR-05	25.182
Al0218.2			-	-	-	-	-	-		Ciclev10022061m	scaffold_3	1203357	1206483
Al0219			-	-	-	-	-	-		Ciclev10028236m	scaffold_8	793820	798369
Al0220			-	-	-	-	-	-		Ciclev10008097m	scaffold_1	3683537	3688814
Al0221			-	-	-	-	-	-
Al0222			-	-	-	-	-	-		Ciclev10015548m	scaffold_2	30607996	30610863
Al0223			-	-	-	-	-	-		Ciclev10011771m	scaffold_6	17438270	17440122	C_unshiu_00008:mRNA_127.1	C_unshiu_00008	890026	891371	CBL-interacting serine/threonine-protein kinase 11									RP-04	17.965
Al0224		AAvailable marker	-	O	-	-	O	O		Ciclev10015872m	scaffold_2	26630154	26632900	C_unshiu_00262:mRNA_19.1	C_unshiu_00262	115955	118351	Probable xyloglucan endotransglucosylase/hydrolase protein 27	AGI-06	67.116	KmG-06	17.100	JtR-06S	3.805	NAT-06S	8.025	RP-06.1	28.576
Al0225			-	-	-	-	-	-		Ciclev10001539m	scaffold_5	41093725	41097411	C_unshiu_01543:mRNA_6.1	C_unshiu_01543	34106	35343	DNA glycosylase superfamily protein			KmG-01	9.277
Al0226			-	-	-	-	-	-		Ciclev10012002m	scaffold_6	2571941	2573984
Al0227			-	-	-	-	-	-		Ciclev10001654m	scaffold_5	42217935	42222257
Al0228			-	-	-	-	-	-		Ciclev10009018m	scaffold_1	26206063	26208427	C_unshiu_00315:mRNA_25.1	C_unshiu_00315	212819	220361	Serine/threonine-protein kinase HT1					JtR-034	7.115
Al0229			-	-	-	-	-	-		Ciclev10018463m	scaffold_3	49675354	49684423
Al0230			-	-	-	-	-	-
Al0231			-	-	-	-	-	-		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof									RP-06.1	7.272
Al0232			-	-	-	-	-	-		Ciclev10026186m	scaffold_7	4997089	4999255
Al0234		OOthers	-	-	-	-	-	-		Ciclev10005909m	scaffold_9	1372972	1374927	C_unshiu_00369:mRNA_20.1	C_unshiu_00369	74034	74546	Ribosomal protein L19			KmG-031	6.974			NAT-03	47.094	RP-03	3.219
Al0235			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926
Al0236			-	-	-	-	-	-		Ciclev10014723m	scaffold_2	32806565	32812384
Al0237			-	-	-	-	-	-		Ciclev10026739m	scaffold_7	5523075	5524475
Al0238			-	-	-	-	-	-		Ciclev10017077m	scaffold_2	8494369	8496454
Al0239		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative
Al0240		AAvailable marker	-	-	-	-	O	O		Ciclev10028497m	scaffold_8	8033465	8038415	C_unshiu_00682:mRNA_9.1	C_unshiu_00682	59786	63447	Hypothetical protein	AGI-08	53.867
Al0241			-	-	-	-	-	-		Ciclev10012288m	scaffold_6	17857849	17860063
Al0242			-	-	-	-	-	-		Ciclev10032030m	scaffold_4	3437577	3441367
Al0243			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Al0244			-	-	-	-	-	-		Ciclev10015497m	scaffold_2	9849133	9852098
Al0245			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839
Al0246			-	-	-	-	-	-		Ciclev10019351m	scaffold_3	44215333	44220917
Al0247		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10029281m	scaffold_8	2227827	2230752	C_unshiu_00024:mRNA_15.1	C_unshiu_00024	104182	106823	Somatic embryogenesis receptor kinase 1	AGI-08	77.316	KmG-08	91.101			NAT-082	73.850
Al0248			-	-	-	-	-	-		Ciclev10028483m	scaffold_8	19779795	19784134
Al0249			-	-	-	-	-	-		Ciclev10004782m	scaffold_9	30490331	30496586
Al0250			-	-	-	-	-	-		Ciclev10031445m	scaffold_4	24770754	24773948
Al0251			-	-	-	-	-	-		Ciclev10021340m	scaffold_3	6695171	6697430
Al0252			-	-	-	-	-	-		Ciclev10028251m	scaffold_8	24689989	24692884
Al0256			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Al0257	Al0257.k		-	-	-	-	-	-		Ciclev10008444m	scaffold_1	22407412	22409529
Al0301			-	-	-	-	-	-		Ciclev10022576m	scaffold_3	45906879	45907641
Al0302		AAvailable marker	-	O	-	-	O	O	SI090,SI311	Ciclev10004372m	scaffold_9	25073693	25080376	C_unshiu_00119:mRNA_33.1	C_unshiu_00119	346131	352710	Putative seed imbibition protein	AGI-03	48.375	KmG-032	18.339	JtR-033		NAT-03	3.773	RP-03	36.113
Al0303			-	-	-	-	-	-		Ciclev10029291m	scaffold_8	24431064	24433341
Al0304		MDisagree by Marco analysis	-	-	-	-	-	-	SI259,SI293	Ciclev10013536m	scaffold_6	22616979	22619271	C_unshiu_00038:mRNA_27.1	C_unshiu_00038	174815	175255	Nutrient reservoir, putative	AGI-04	46.361	KmG-04	16.744			NAT-04		RP-04	54.617
Al0305			-	-	-	-	-	-		Ciclev10021551m	scaffold_3	47200055	47201893
Al0306		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI029	Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin					JtR-05	23.944
Al0307	Al0307.2		-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222
Al0308			-	-	-	-	-	-	SI045	Ciclev10028262m	scaffold_8	24521116	24524868	C_unshiu_00021:mRNA_97.1	C_unshiu_00021	630527	634212	NAD(P)H dehydrogenase B2	AGI-05	56.788
Al0309		AAvailable marker	O	-	-	-	-	O		Ciclev10022019m	scaffold_3	44900059	44900865	C_unshiu_00069:mRNA_47.1	C_unshiu_00069	301188	317479	Hypothetical protein			KmG-05S	73.967	JtR-05	38.749			RP-05	86.332
Al0310	Al0309.2		-	-	-	-	-	-		Ciclev10022019m	scaffold_3	44900059	44900865
Al0311			-	-	-	-	-	-		Ciclev10020637m	scaffold_3	5456336	5459361
Al0312			-	-	-	-	-	-		Ciclev10021037m	scaffold_3	4144939	4148359
Al0313		AAvailable marker	O	-	-	-	O	O		Ciclev10011272m	scaffold_6	23966039	23969583	C_unshiu_00133:mRNA_4.2	C_unshiu_00133	22485	26003	Putative phosphatidylinositol 4-kinase type 2-beta	AGI-04	38.152	KmG-04	9.748
Al0314			-	-	-	-	-	-		Ciclev10009591m	scaffold_1	2574769	2577568
Al0315			-	-	-	-	-	-		Ciclev10028656m	scaffold_8	4905341	4909930
Al0316			O	-	-	-	-	-		Ciclev10021599m	scaffold_3	40918148	40922656
Al0317			-	-	-	-	-	-		Ciclev10021392m	scaffold_3	3006218	3008357	C_unshiu_00092:mRNA_60.1	C_unshiu_00092	425854	427887	CASP-like protein 4A2			KmG-05S	16.871	JtR-05	9.525
Al0318	Al0318.2	AAvailable marker	-	-	-	-	-	O		Ciclev10021392m	scaffold_3	3006218	3008357
Al0319		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10022720m	scaffold_3	43447942	43449920	C_unshiu_00411:mRNA_15.1	C_unshiu_00411	140821	145311	Actin-depolymerizing factor 2	AGI-03	46.274	KmG-05S	65.273	JtR-05	42.339			RP-05	72.912
Al0320			-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121	C_unshiu_01206:mRNA_1.1	C_unshiu_01206	4346	5819	Phosphoenolpyruvate carboxylase family protein					JtR-05	23.890
Al0320.2	Al0320.em	AAvailable marker	-	-	-	-	-	O		Ciclev10020878m	scaffold_3	541575	543121	C_unshiu_01206:mRNA_1.1	C_unshiu_01206	4346	5819	Phosphoenolpyruvate carboxylase family protein					JtR-05	23.890
Al0321.2		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121
Al0322			-	-	-	-	-	-		Ciclev10002194m	scaffold_5	34801352	34804440
Al0323		OOthers	-	-	-	-	-	-		Ciclev10012875m	scaffold_6	18188139	18189060
Al0324		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029315m	scaffold_8	20424287	20425903	C_unshiu_00320:mRNA_1.2	C_unshiu_00320	12758	14314	Hypothetical protein	AGI-08	41.127					NAT-082	31.019	RP-08	17.081
Al0325			-	-	-	-	-	-
Al0326		AAvailable marker	-	-	-	O	O	-	SI065,SI344	Ciclev10022558m	scaffold_3	6409311	6411254	C_unshiu_00443:mRNA_7.1	C_unshiu_00443	62532	64193	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-05	42.609	KmG-05S	32.841	JtR-05	16.025			RP-05	27.235
Al0327	Al0326.2		-	-	-	-	-	-		Ciclev10022558m	scaffold_3	6409311	6411254
Al0328			-	-	-	-	-	-		Ciclev10006155m	scaffold_9	29952005	29956306
Al0329		AAvailable marker	O	-	-	-	O	O	SI185	Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.162	KmG-02	11.218	JtR-02	7.174	NAT-02S	5.552	RP-02	8.191
Al0330			-	-	-	-	-	-		Ciclev10009377m	scaffold_1	7455492	7457451
Al0331		AAvailable marker	-	-	-	-	-	O		Ciclev10033190m	scaffold_4	8406632	8407188	C_unshiu_00111:mRNA_9.1	C_unshiu_00111	83531	84087	Hypothetical protein			KmG-09	9.593	JtR-07	52.611			RP-07	19.079
Al0332			-	-	-	-	-	-		Ciclev10032086m	scaffold_4	14895728	14896991
Al0333			-	-	-	-	-	-		Ciclev10004130m	scaffold_9	3954507	3961401
Al0334			-	-	-	-	-	-		Ciclev10008488m	scaffold_1	18113949	18117209
Al0335			-	-	-	-	-	-		Ciclev10021844m	scaffold_3	6131214	6135849
Al0336			-	-	-	-	-	-		Ciclev10001109m	scaffold_5	35917384	35925361
Al0337			-	-	-	-	-	-		Ciclev10025556m	scaffold_7	6437406	6440864
Al0401		OOthers	O	-	-	-	-	-		Ciclev10025346m	scaffold_7	13180567	13191638	C_unshiu_01698:mRNA_6.1	C_unshiu_01698	39336	40206	Hypothetical protein			KmG-02	26.204	JtR-02	-6.043	NAT-02S	22.960
Al0402		AAvailable marker	O	-	-	-	O	O						C_unshiu_00008:mRNA_88.1	C_unshiu_00008	564906	567158	Peptide upstream ORF protein, putative	AGI-08	81.190	KmG-04	44.163			NAT-04	28.388
Al0403			-	-	-	-	-	-		Ciclev10007559m	scaffold_1	26802787	26810465
Al0404			-	-	-	-	-	-		Ciclev10025902m	scaffold_7	4015735	4020920
Al0405			-	-	-	-	-	-		Ciclev10024622m	scaffold_3	30021998	30023908
Al0406			-	-	-	-	-	-
Al0407		AAvailable marker	O	-	-	-	O	O		Ciclev10009315m	scaffold_1	26576059	26578193	C_unshiu_00131:mRNA_17.1	C_unshiu_00131	121152	123183	60S ribosomal protein L7	AGI-01	31.240	KmG-01	15.673	JtR-01S	57.666			RP-01	79.425
Al0408			O	-	-	-	-	-		Ciclev10031487m	scaffold_4	23737757	23740513	C_unshiu_00001:mRNA_109.1	C_unshiu_00001	727392	729266	F-box/kelch-repeat protein SKIP11	AGI-07	75.917	KmG-07	13.235	JtR-07	1.788
Al0409		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI201,SI252	Ciclev10024949m	scaffold_7	5042508	5046271	No					AGI-02	50.758	KmG-02	44.930	JtR-02	29.462	NAT-02S	90.742
Al0410			-	-	-	-	-	-		Ciclev10026113m	scaffold_7	7739782	7742295
Al0411		AAvailable marker	O	-	-	-	O	O		Ciclev10029439m	scaffold_8	19760077	19761961	C_unshiu_00011:mRNA_19.2	C_unshiu_00011	188649	189649	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-08	40.857
Al0412			-	-	-	-	-	-		Ciclev10023374m	scaffold_3	25612741	25615635
Al0413		AAvailable marker	-	-	-	O	O	O	SI275,SI299	Ciclev10004620m	scaffold_9	7579900	7583093	C_unshiu_00063:mRNA_61.1	C_unshiu_00063	483279	486427	Chloroplast beta-amylase 3	AGI-03	46.197	KmG-032	19.570	JtR-031	10.395			RP-03	33.559
Al0414			-	-	-	-	-	-		Ciclev10014243m	scaffold_2	34775232	34780330
Al0415		AAvailable marker	-	-	-	-	O	O	SI120,SI310	Ciclev10004660m	scaffold_9	2732900	2738896	C_unshiu_00040:mRNA_76.1	C_unshiu_00040	632823	638463	Mitogen-activated protein kinase 14	AGI-03	24.885	KmG-031				NAT-03	41.576
Al0416		OOthers	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00639:mRNA_12.1	C_unshiu_00639	90698	99467	Elongation factor 1-alpha	AGI-08	23.023			JtR-07	60.405	NAT-082	21.126
Al0417		MDisagree by Marco analysis	O	-	-	-	-	-	SI244,SI255	Ciclev10015483m	scaffold_2	35212691	35214865	C_unshiu_00048:mRNA_50.1	C_unshiu_00048	328418	330513	Kelch repeat-containing F-box family protein	AGI-06	20.297	KmG-06	62.256			NAT-06S	56.647
Al0418			-	-	-	-	-	-		Ciclev10004717m	scaffold_9	27765515	27767561
Al0419		OOthers	O	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181	C_unshiu_00394:mRNA_25.1	C_unshiu_00394	150531	152208	Hypothetical protein	AGI-03	17.378	KmG-09	9.593	JtR-09S	7.976
Al0420			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23068026	23072168
Al0421		OOthers	-	-	-	-	-	-		Ciclev10011875m	scaffold_6	11782952	11785527
Al0422		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662	C_unshiu_00032:mRNA_34.1	C_unshiu_00032	369423	370581	Subtilisin inhibitor 1, putative	AGI-08	93.695
Al0423	Al0422.2		-	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662
Al0424			-	-	-	-	-	-		Ciclev10005576m	scaffold_9	25493378	25500370
Al0425			-	-	-	-	-	-		Ciclev10013630m	scaffold_6	1290709	1292040
Al0426			-	-	-	-	-	-		Ciclev10007391m	scaffold_1	1128897	1137063
Al0427	Al0247.em		-	-	-	-	-	-		Ciclev10016829m	scaffold_2	23695881	23697100
Al0501		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10012221m	scaffold_6	14625884	14628443	C_unshiu_00032:mRNA_48.1	C_unshiu_00032	462609	490932	Tropinone reductase I
Al0502			-	-	-	-	-	-		Ciclev10011657m	scaffold_6	21464335	21470434
Al0503			-	-	-	-	-	-		Ciclev10011469m	scaffold_6	21236903	21242261
Al0504			-	-	-	-	-	-		Ciclev10015664m	scaffold_2	35273688	35277908
Al0505			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892	C_unshiu_00012:mRNA_14.1	C_unshiu_00012	117194	125051	Plasma membrane intrinsic protein									RP-07	51.815
Al0506			-	-	-	-	-	-		Ciclev10005101m	scaffold_9	30836435	30841216
Al0507			-	-	-	-	-	-		Ciclev10002395m	scaffold_5	17289723	17290702
Al0508			-	-	-	-	-	-		Ciclev10017102m	scaffold_2	35920186	35922196
Al0509			-	-	-	-	-	-		Ciclev10001812m	scaffold_5	39862762	39864726
Al0510			-	-	-	-	-	-		Ciclev10008176m	scaffold_1	22792920	22795069
Al0511			-	-	-	-	-	-		Ciclev10020158m	scaffold_3	25053425	25057795
Al0512			-	-	-	-	-	-		Ciclev10026719m	scaffold_7	4280712	4281481
Al0513		OOthers	-	-	-	-	-	-		Ciclev10009222m	scaffold_1	8046181	8049306	C_unshiu_00191:mRNA_21.1	C_unshiu_00191	243988	246458	Stem 28 kDa glycoprotein	AGI-01	60.031	KmG-01	41.591
Al0514		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme			KmG-04	32.217
Al0515		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI178	Ciclev10030023m	scaffold_8	2673135	2674232	C_unshiu_00152:mRNA_38.1	C_unshiu_00152	273851	275034	DNA-damage-repair/toleration protein DRT100	AGI-08	73.663			JtR-08	14.154	NAT-081	10.596
Al0516			-	-	-	-	-	-		Ciclev10019134m	scaffold_3	5981066	5985524
Al0517		AAvailable marker	-	-	-	-	O	O		Ciclev10028293m	scaffold_8	2572439	2574295	C_unshiu_00363:mRNA_1.1	C_unshiu_00363	5892	7583	Limonoid glucosyltransferase	AGI-08	74.016			JtR-08	15.435
Al0518			-	-	-	-	-	-		Ciclev10011450m	scaffold_6	23306386	23311678
Al0519		DDominant marker	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	No													RP-06.1
Al0520			-	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Al0521			-	-	-	-	-	-		Ciclev10029787m	scaffold_8	23136753	23137537
Al0522			-	-	-	-	-	-		Ciclev10008765m	scaffold_1	21082902	21086082
Al0523			-	-	-	-	-	-		Ciclev10009349m	scaffold_1	177116	180417
Al0524		AAvailable marker	O	O	-	-	O	O	SI043,SI341	Ciclev10031723m	scaffold_4	115362	118025	C_unshiu_02038:mRNA_4.1	C_unshiu_02038	34256	38775	Hypothetical protein	AGI-07	5.972			JtR-07	76.060			RP-07	74.381
Al0525		OOthers	O	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023	C_unshiu_00312:mRNA_20.2	C_unshiu_00312	114652	116351	High mobility group (HMG)-box protein	AGI-01	38.939	KmG-01	41.081
Al0526	Al0526.em		-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295
Al0601			-	-	-	-	-	-						C_unshiu_00065:mRNA_8.1	C_unshiu_00065	39268	43421	Probable GTP diphosphokinase RSH2, chloroplastic	AGI-08	93.624
Al0602		AAvailable marker	-	-	-	-	-	O		Ciclev10017248m	scaffold_2	27141148	27141869	C_unshiu_00017:mRNA_42.1	C_unshiu_00017	304994	305523	Hypothetical protein			KmG-06	18.450	JtR-06S	3.805
Al0603			-	-	-	-	-	-		Ciclev10007714m	scaffold_1	13325813	13336158
Al0604			-	-	-	-	-	-		Ciclev10000084m	scaffold_5	33791194	33800828
Al0604.2	Al0604.k		-	-	-	-	-	-		Ciclev10000084m	scaffold_5	33791194	33800828
Al0605		OOthers	-	-	-	-	-	-		Ciclev10022151m	scaffold_3	41434064	41437122	C_unshiu_00194:mRNA_5.1	C_unshiu_00194	38569	41571	Eukaryotic translation initiation factor 4E	AGI-05	48.750	KmG-05S	65.384
Al0606.2			-	-	-	-	-	-
Al0607			-	-	-	-	-	-		Ciclev10016035m	scaffold_2	36163290	36165355
Al0608			-	-	-	-	-	-		Ciclev10002359m	scaffold_5	6440802	6444240
Al0609			-	-	-	-	-	-		Ciclev10001329m	scaffold_5	42265153	42269676
Al0610			-	-	-	-	-	-		Ciclev10028696m	scaffold_8	23885103	23890220
Al0611			-	-	-	-	-	-
Al0612		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10001524m	scaffold_5	29481817	29485113	C_unshiu_01370:mRNA_2.1	C_unshiu_01370	27014	30283	UDP-glucuronic acid decarboxylase 1			KmG-09	28.332	JtR-09S	32.873
Al0613			-	-	-	-	-	-		Ciclev10031928m	scaffold_4	23078232	23081009
Al0614			-	-	-	-	-	-		Ciclev10022348m	scaffold_3	44987719	44991534	C_unshiu_00069:mRNA_32.1	C_unshiu_00069	220620	224375	Methyl-CpG-binding domain 4	AGI-05	56.788	KmG-06	35.565
Al0615			-	-	-	-	-	-		Ciclev10014304m	scaffold_2	22607375	22611126
Al0616			-	-	-	-	-	-		Ciclev10007561m	scaffold_1	4343812	4351112
Al0617		AAvailable marker	O	-	-	-	O	O		Ciclev10033546m	scaffold_4	1021179	1023023	C_unshiu_00012:mRNA_24.1	C_unshiu_00012	188654	191971	Ubiquitin-binding WIYLD domain protein	AGI-07	8.553			JtR-07	74.121
Al0618		AAvailable marker	-	-	-	-	O	O		Ciclev10000916m	scaffold_5	40872793	40877775	C_unshiu_00123:mRNA_34.1	C_unshiu_00123	204269	222067	Phosphatase 2c, putative isoform 6	AGI-09	38.004	KmG-09	73.330
Al0619			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313	C_unshiu_00311:mRNA_12.1	C_unshiu_00311	55933	60057	TLP domain class transcription factor	AGI-01	57.863	KmG-01	39.698
Al0620		OOthers	-	-	-	-	-	-		Ciclev10025816m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein			KmG-02	36.964	JtR-02	17.013
Al0621		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10025875m	scaffold_7	4575503	4577125	C_unshiu_00656:mRNA_8.1	C_unshiu_00656	32940	34329	Hypothetical protein	AGI-02	60.566	KmG-02	47.196	JtR-02	28.472
Al0622			-	-	-	-	-	-		Ciclev10006115m	scaffold_9	5152012	5155157
Al0623			-	-	-	-	-	-		Ciclev10004560m	scaffold_9	5648639	5654374
Al0624			-	-	-	-	-	-		Ciclev10021584m	scaffold_3	42647413	42652459	C_unshiu_01228:mRNA_6.1	C_unshiu_01228	43617	48513	Tetraspanin family protein	AGI-05	29.354
Al0625		AAvailable marker	O	-	-	-	O	O	SI329					C_unshiu_00139:mRNA_45.1	C_unshiu_00139	346138	349862	Regulator of chromosome condensation family protein	AGI-04	66.455							RP-04	23.717
Al0626			-	-	-	-	-	-
Al0627		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025602m	scaffold_7	128539	131642	C_unshiu_00706:mRNA_3.1	C_unshiu_00706	16590	18098	Trigalactosyldiacylglycerol 1 isoform 1	AGI-02	78.531
Al0628			-	-	-	-	-	-		Ciclev10004696m	scaffold_9	28974337	28977865	C_unshiu_00045:mRNA_76.1	C_unshiu_00045	547196	550605	O-glucosyltransferase rumi like			KmG-031	5.650
Al0629			-	-	-	-	-	-
Al0630		AAvailable marker	O	-	-	-	-	O		Ciclev10008681m	scaffold_1	487184	489198	C_unshiu_00129:mRNA_38.1	C_unshiu_00129	342865	344872	Kelch repeat-containing F-box family protein									RP-01	1.092
Al0631			-	-	-	-	-	-		Ciclev10008689m	scaffold_1	20096297	20101958
Al0632		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like	AGI-08	56.724			JtR-08	18.952
Al0633		OOthers	O	-	-	-	-	O	SI123	Ciclev10015092m	scaffold_2	33837403	33842156	C_unshiu_00002:mRNA_126.1	C_unshiu_00002	901824	911260	Vascular plant one zinc finger protein isoform 1			KmG-06	55.857	JtR-06S	59.645	NAT-06S	51.106	RP-06.2	27.837
Al0634		OOthers	-	-	-	-	-	-		Ciclev10002460m	scaffold_5	29400846	29403554
Al0635		AAvailable marker	-	-	-	-	O	O		Ciclev10015354m	scaffold_2	26435540	26438838	C_unshiu_00197:mRNA_27.1	C_unshiu_00197	251131	253300	GAGA-binding transcriptional activator	AGI-06	69.195	KmG-06	15.268	JtR-06S	1.903	NAT-06S	7.869
Al0635.2	Al0635.k		-	-	-	-	-	-		Ciclev10015354m	scaffold_2	26435540	26438838
Al0636		AAvailable marker	O	-	-	O	O	O	SI313	Ciclev10007493m	scaffold_1	23776796	23782088	C_unshiu_00080:mRNA_56.1	C_unshiu_00080	464290	469444	WW domain-containing protein	AGI-01	27.489	KmG-01	25.751	JtR-01S	63.210	NAT-01S	12.652	RP-01	48.896
Al0637		AAvailable marker	O	-	-	-	-	O	SI353	Ciclev10019147m	scaffold_3	2939620	2941934	C_unshiu_00092:mRNA_51.1	C_unshiu_00092	363486	365791	Spotted leaf protein, putative
Al0638		OOthers	O	-	-	-	-	-		Ciclev10027380m	scaffold_7	8662041	8665543	C_unshiu_00221:mRNA_2.1	C_unshiu_00221	6658	10157	VHS domain-containing protein			KmG-07	23.435	JtR-07	17.224	NAT-07	24.049
Al0639		AAvailable marker	O	-	-	-	O	O		Ciclev10001091m	scaffold_5	41703787	41708779	C_unshiu_00009:mRNA_141.1	C_unshiu_00009	874868	888901	IQ calmodulin-binding motif protein	AGI-01	70.494	KmG-01	48.992	JtR-01S	110.675	NAT-01S	94.639	RP-01	28.746
Al0640			-	-	-	-	-	-		Ciclev10020536m	scaffold_3	45679581	45683773
Al0641			-	-	-	-	-	-		Ciclev10017193m	scaffold_2	33624492	33626591
Al0642			-	-	-	-	-	-		Ciclev10012548m	scaffold_6	11100647	11103340
Al0643			-	-	-	-	-	-		Ciclev10012685m	scaffold_6	11126658	11131076	C_unshiu_02977:mRNA_1.1	C_unshiu_02977	1950	2673	Dolichyldiphosphatase 1	AGI-08	56.724
Al0644			-	-	-	-	-	-		Ciclev10011184m	scaffold_6	25237872	25242427
Al0645			-	-	-	-	-	-		Ciclev10033996m	scaffold_4	356772	358913
Al0646			-	-	-	-	-	-		Ciclev10015589m	scaffold_2	4461151	4463605
Al0647		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10016069m	scaffold_2	32640743	32643349	C_unshiu_00070:mRNA_53.1	C_unshiu_00070	403765	406305	Nitric oxide synthase-interacting protein homolog	AGI-06		KmG-06	46.877
Al0648			-	-	-	-	-	-		Ciclev10001973m	scaffold_5	26990579	26995388
Al0649	Al0649.snA		-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279
Bf0001			-	-	-	-	-	-		Ciclev10016890m	scaffold_2	12281395	12282562
Bf0003		ULess informative for main cultivars	O	-	-	-	-	-	SI354	Ciclev10011720m	scaffold_6	16246773	16250769	C_unshiu_00390:mRNA_6.1	C_unshiu_00390	75799	78947	Vacuolar cation/proton exchanger 3									RP-04	10.253
Bf0004			-	-	-	-	-	-	SI273	Ciclev10005212m	scaffold_9	29563003	29568705	C_unshiu_00056:mRNA_33.1	C_unshiu_00056	220997	225323	Pentatricopeptide repeat superfamily protein, putative isoform 1	AGI-03	58.312
Bf0005			-	-	-	-	-	-	SI194	Ciclev10005100m	scaffold_9	465444	468143	C_unshiu_00007:mRNA_115.1	C_unshiu_00007	710354	712926	Phosphatase 2C family protein	AGI-03	8.177
Bf0006			-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279
Bf0007			-	-	-	-	-	-		Ciclev10030544m	scaffold_4	19947429	19954736
Bf0008			-	-	-	-	-	-	SI309	Ciclev10012950m	scaffold_6	22467565	22470029	C_unshiu_00038:mRNA_5.1	C_unshiu_00038	40983	43503	Pollen-specific C2 domain containing protein	AGI-04	47.391							RP-04	50.862
Bf0009			-	-	-	-	-	-		Ciclev10000845m	scaffold_5	26866036	26868420
Bf0010			-	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028
Bf0011		AAvailable marker	O	-	-	-	O	O	SI218	Ciclev10008900m	scaffold_1	4722889	4726339	C_unshiu_00547:mRNA_9.1	C_unshiu_00547	54556	57654	NADH-cytochrome b5 reductase	AGI-01	67.331							RP-01	23.653
Bf0013			O	-	-	-	-	-		Ciclev10008507m	scaffold_1	23111733	23116067	No					AGI-01								RP-01	47.360
Bf0016			O	-	-	-	-	-		Ciclev10002605m	scaffold_5	35782419	35784765	C_unshiu_00255:mRNA_23.1	C_unshiu_00255	146364	148653	Protein CutA 1, chloroplastic									RP-09	67.943
Bf0017			-	-	-	-	-	-		Ciclev10031215m	scaffold_4	2131158	2133384
Bf0019			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806	C_unshiu_00376:mRNA_8.1	C_unshiu_00376	72474	76027	Putative serine/threonine-protein kinase Cx32									RP-04
Bf0020			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839	C_unshiu_00119:mRNA_25.1	C_unshiu_00119	238437	248656	Guanylate kinase	AGI-03	47.887							RP-03	37.189
Bf0021			O	-	-	-	-	-		Ciclev10031010m	scaffold_4	1058825	1062698	C_unshiu_00012:mRNA_26.1	C_unshiu_00012	227838	231495	Anthranilate synthase component I									RP-07	52.587
Bf0022			-	-	-	-	-	-		Ciclev10008584m	scaffold_1	6628388	6634237
Bf0024			O	-	-	-	-	-	SI093	Ciclev10002093m	scaffold_5	38134662	38138860	C_unshiu_00319:mRNA_24.1	C_unshiu_00319	167810	171973	Probable protein phosphatase 2C 11	AGI-05	39.006
Bf0025			-	-	-	-	-	-		Ciclev10008159m	scaffold_1	7402730	7407596
Bf0026			-	-	-	-	-	-		Ciclev10008765m	scaffold_1	21082902	21086082	C_unshiu_00487:mRNA_12.1	C_unshiu_00487	113166	115416	Thiazole biosynthetic enzyme	AGI-01	43.164							RP-01	56.137
Bf0027			-	-	-	-	-	-	SI372	Ciclev10032632m	scaffold_4	14565456	14567860	C_unshiu_00113:mRNA_23.1	C_unshiu_00113	169695	172465	Superoxide dismutase	AGI-07	40.515
Bf0028		DDominant marker	O	-	-	O	-	-	SI001	Ciclev10014319m	scaffold_2	35354776	35363026	C_unshiu_00048:mRNA_32.1	C_unshiu_00048	179733	188796	Soluble starch synthase III-1	AGI-06	17.966
Bf0029		MDisagree by Marco analysis	-	-	-	O	-	-	SI193,SI283					C_unshiu_00564:mRNA_19.1	C_unshiu_00564	138967	142178	Limonene synthase	AGI-09	84.912	KmG-09	24.379	JtR-09S	5.526
Bf0030			O	-	-	-	-	-		Ciclev10022841m	scaffold_3	46452893	46453717	C_unshiu_00627:mRNA_10.1	C_unshiu_00627	45215	45931	Calvin cycle protein CP12									RP-05	58.661
Bf0031			O	-	-	-	-	-		Ciclev10031547m	scaffold_4	4077557	4083819	C_unshiu_00306:mRNA_12.1	C_unshiu_00306	51707	57589	Chorismate synthase	AGI-07	32.590							RP-07	19.092
Bf0032			O	-	-	-	-	-		Ciclev10030771m	scaffold_4	5378983	5392182
Bf0033			-	-	-	-	-	-	SI356,SI379	Ciclev10007537m	scaffold_1	27204998	27211059	C_unshiu_00347:mRNA_22.1	C_unshiu_00347	166830	172467	NADPH--hemoprotein reductase	AGI-01	32.408							RP-01	85.146
Bf0034			-	-	-	-	-	-		Ciclev10032747m	scaffold_4	16821255	16823718
Bf0036		AAvailable marker	O	O	-	O	O	O		Ciclev10008751m	scaffold_1	22840947	22844111	C_unshiu_00103:mRNA_45.1	C_unshiu_00103	244231	250643	GrpE protein homolog	AGI-01	29.144							RP-01	46.445
Bf0101			-	-	-	-	-	-		Ciclev10003680m	scaffold_5	32917826	32924241	C_unshiu_00229:mRNA_13.1	C_unshiu_00229	57438	62744	Hypothetical protein							NAT-09	50.353
Bf0102			-	-	-	-	-	-		Ciclev10001348m	scaffold_5	42390616	42395712
Bf0103			-	-	-	-	-	-		Ciclev10021205m	scaffold_3	8556241	8560871
Bf0104			O	-	-	-	-	-						C_unshiu_01101:mRNA_8.1	C_unshiu_01101	77694	80951	12-oxophytodienoate reductase 2	AGI-05	41.306					NAT-05
Bf0106			-	-	-	-	-	-
Bf0107			-	-	-	-	-	-
Bf0109			-	-	-	-	-	-	SI233	Ciclev10032461m	scaffold_4	1970129	1972842	C_unshiu_00058:mRNA_65.1	C_unshiu_00058	521901	525000	Uroporphyrinogen decarboxylase									RP-07	51.394
Bf0110			-	-	-	-	-	-	SI297	Ciclev10014639m	scaffold_2	35235517	35237892	C_unshiu_00048:mRNA_48.1	C_unshiu_00048	306412	308620	9-cis-epoxycarotenoid dioxygenase 1
Bf0112			-	-	-	-	-	-		Ciclev10011997m	scaffold_6	10485064	10488724
Bf0113			-	-	-	-	-	-		Ciclev10031989m	scaffold_4	12678671	12681681
Bf0115			O	-	-	-	-	-	SI054,SI295	Ciclev10029066m	scaffold_8	6317205	6322458	C_unshiu_00484:mRNA_11.3	C_unshiu_00484	48216	54250	Squalene synthase	AGI-08	58.587					NAT-081	17.717
Bf0116			-	-	-	-	-	-	SI260	Ciclev10015490m	scaffold_2	7662753	7667440	C_unshiu_00729:mRNA_11.1	C_unshiu_00729	81415	86474	Aminotransferase 2	AGI-06	133.800							RP-06.1	28.601
Bf0117			-	-	-	-	-	-		Ciclev10013983m	scaffold_1	2490	4223
Bf0118			-	-	-	-	-	-		Ciclev10021811m	scaffold_3	43869583	43874373
Bf0119			O	-	-	-	-	-		Ciclev10005276m	scaffold_9	10744341	10746393
Bf0120			-	-	-	-	-	-		Ciclev10001047m	scaffold_5	26935357	26947618
Bf0121			-	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265
Bf0122			-	-	-	-	-	-		Ciclev10016206m	scaffold_2	22471208	22474774
Bf0123			-	-	-	-	-	-	SI141	Ciclev10011473m	scaffold_6	15803864	15809998	C_unshiu_00284:mRNA_13.1	C_unshiu_00284	114758	120828	Sulfoquinovosyldiacylglycerol 2	AGI-08	92.221							RP-04	10.226
Bf0124			-	-	-	-	-	-		Ciclev10014143m	scaffold_2	30660124	30670009
Bf0125			-	-	-	-	-	-		Ciclev10001956m	scaffold_5	15764937	15766976	C_unshiu_00293:mRNA_8.1	C_unshiu_00293	104196	105925	NAC transcription factor							NAT-03	8.920	RP-03	31.431
Bf0127			-	-	-	-	-	-		Ciclev10003654m	scaffold_5	24456425	24462454
Bf0128			O	-	-	-	-	-		Ciclev10025298m	scaffold_7	3323269	3331038	C_unshiu_00051:mRNA_2.2	C_unshiu_00051	25872	40163	Hypothetical protein	AGI-02	70.082					NAT-02S	77.157	RP-02.2	9.835
Bf0130			-	-	-	-	-	-	SI063,SI188	Ciclev10004858m	scaffold_9	26981498	26984277	C_unshiu_00095:mRNA_24.1	C_unshiu_00095	228406	230902	F-box family protein isoform 1	AGI-03	40.452
Bf0136		AAvailable marker	O	-	-	-	-	O
Bf0138		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10019462m	scaffold_3	6072460	6076187	C_unshiu_00428:mRNA_16.2	C_unshiu_00428	119232	121021	Oxygen-evolving enhancer protein 2, chloroplastic							NAT-05	14.555	RP-05	24.995
Bf0141			-	-	-	-	-	-		Ciclev10009364m	scaffold_1	22893476	22896534
Bf0142			O	-	-	-	-	-		Ciclev10024891m	scaffold_7	8508837	8516759	C_unshiu_00290:mRNA_16.1	C_unshiu_00290	151884	158772	Class III homeodomain leucine zipper protein	AGI-02	5.104
Bf0143			-	-	-	-	-	-		Ciclev10011434m	scaffold_6	25101237	25104868
Bf0145			O	-	-	O	-	-	SI272,SI327,SI368	Ciclev10027909m	scaffold_8	22730839	22737522	C_unshiu_00158:mRNA_13.1	C_unshiu_00158	102548	109253	Pseudo-response regulator 37	AGI-08	20.703							RP-08	5.775
Bf0146			O	-	-	-	-	-		Ciclev10022345m	scaffold_3	48528820	48531316	C_unshiu_00026:mRNA_37.1	C_unshiu_00026	280361	282836	RRNA-processing protein FCF1	AGI-05	78.274
Bf0147			-	-	-	-	-	-	SI165	Ciclev10014858m	scaffold_2	5975367	5977280	C_unshiu_00260:mRNA_18.1	C_unshiu_00260	124629	126502	Flavonoid 3'-monooxygenase									RP-06.1	47.841
Bf0148			-	-	-	-	-	-		Ciclev10012535m	scaffold_6	20133118	20134805	No					AGI-04	62.325					NAT-04	12.575
Bf0150			-	-	-	-	-	-	SI316,SI370	Ciclev10004834m	scaffold_9	31018836	31027361	C_unshiu_00003:mRNA_85.1	C_unshiu_00003	596288	610960	Aldehyde dehydrogenase	AGI-03	77.920							RP-03	77.748
Bf0156			-	-	-	-	-	-		Ciclev10021991m	scaffold_3	1470163	1473304
Bf0158			-	O	-	O	-	-	SI376	Ciclev10021285m	scaffold_3	5253281	5254755	C_unshiu_00795:mRNA_3.1	C_unshiu_00795	22534	23534	Ethylene responsive element binding factor, putative	AGI-05	29.035					NAT-05	21.258	RP-05	20.825
Bf0159			-	-	-	-	-	-	SI074	Ciclev10016059m	scaffold_2	13502268	13505597	C_unshiu_01990:mRNA_1.1	C_unshiu_01990	10471	13748	DCD (Development and cell death) domain protein									RP-06.1	23.326
Bf0160			-	-	-	-	-	-		Ciclev10016613m	scaffold_2	30599335	30602528
Bf0161			-	-	-	-	-	-	SI089,SI348	Ciclev10015189m	scaffold_2	6658003	6660691	C_unshiu_00072:mRNA_47.1	C_unshiu_00072	364436	365812	Sequence-specific DNA binding transcription factors	AGI-06	144.849
Bf0164		ULess informative for main cultivars	O	-	-	-	-	-	SI263	Ciclev10000615m	scaffold_5	43060442	43066562	C_unshiu_00370:mRNA_39.2	C_unshiu_00370	217887	223455	Pyrophosphate-dependent phosphofructokinase alpha subunit	AGI-09	21.471					NAT-09	111.981	RP-09	94.065
Bf0165			-	-	-	-	-	-	SI280	Ciclev10021901m	scaffold_3	4903592	4905871	C_unshiu_00628:mRNA_6.1	C_unshiu_00628	38419	40239	Bax inhibitor 1	AGI-05	29.035					NAT-05	23.083	RP-05	19.690
Bf0167			-	-	-	-	-	-		Ciclev10014944m	scaffold_2	26011586	26016025
Bf0171			-	-	-	-	-	-	SI381	Ciclev10006006m	scaffold_9	4116356	4117315	C_unshiu_00101:mRNA_25.1	C_unshiu_00101	280469	282533	Early light-induced protein, chloroplastic	AGI-03	52.548
Bf0174			O	-	-	-	-	-	SI282	Ciclev10019861m	scaffold_3	3551542	3555978	C_unshiu_00120:mRNA_17.1	C_unshiu_00120	130029	134158	Atp-dependent RNA helicase	AGI-05	25.049
Bf0177			-	-	-	-	-	-	SI060	Ciclev10022075m	scaffold_3	8186689	8189902	C_unshiu_00154:mRNA_43.2	C_unshiu_00154	341574	344576	Phosphoserine phosphatase	AGI-05	44.047
Bf0179			-	-	-	-	-	-		Ciclev10028278m	scaffold_8	9383280	9385123
Bf0180			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Bf0182			O	-	-	-	-	-		Ciclev10009454m	scaffold_1	17831333	17834889	C_unshiu_00429:mRNA_12.1	C_unshiu_00429	90883	94296	3-deoxy-D-manno-octulosonate cytidylyltransferase	AGI-01	47.439
Bf0183			O	-	-	-	-	-	SI308	Ciclev10005208m	scaffold_9	5254416	5256826	C_unshiu_01106:mRNA_9.1	C_unshiu_01106	77275	79234	Hypothetical protein
Bf0184			O	-	-	-	-	-		Ciclev10021248m	scaffold_3	24893551	24898675	C_unshiu_00286:mRNA_27.1	C_unshiu_00286	216376	220366	Cysteine protease ATG4B	AGI-05	41.306
Bf0189			-	-	-	-	-	-						C_unshiu_00008:mRNA_66.1	C_unshiu_00008	372226	374586	Ferritin									RP-04	15.774
Bf0193			O	-	-	-	-	-	SI100,SI109	Ciclev10014811m	scaffold_2	35970577	35973973	C_unshiu_00077:mRNA_15.2	C_unshiu_00077	102078	105358	Scarecrow-like transcription factor PAT1									RP-06.2	14.065
Bf0195			-	-	-	-	-	-	SI369	Ciclev10000780m	scaffold_5	31069237	31075092	C_unshiu_00422:mRNA_5.1	C_unshiu_00422	35322	40511	Sodium/hydrogen exchanger 2	AGI-09	74.076
Bf0197			-	-	-	-	-	-		Ciclev10025476m	scaffold_7	5654376	5658039
Bf0200		OOthers	-	-	-	-	-	-	SI335	Ciclev10014367m	scaffold_2	29022433	29030724	C_unshiu_00022:mRNA_44.1	C_unshiu_00022	308324	316293	Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Bf0201			-	-	-	-	-	-		Ciclev10015180m	scaffold_2	29370560	29376244
Bf0202			-	-	-	-	-	-		Ciclev10000607m	scaffold_5	24103753	24107361	C_unshiu_00011:mRNA_55.1	C_unshiu_00011	511309	514460	Protein ETHYLENE INSENSITIVE 3									RP-09	27.641
Bf0203			-	-	-	-	-	-		Ciclev10022162m	scaffold_3	42410482	42413511
Bf0204			-	-	-	-	-	-	SI326	Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic									RP-02.2	9.835
Bf0205			O	-	-	-	-	-	SI236	Ciclev10025925m	scaffold_7	3541924	3543863	C_unshiu_00301:mRNA_11.1	C_unshiu_00301	55570	57462	WRKY
Bf0207			-	-	-	-	-	-		Ciclev10014190m	scaffold_2	22005783	22011411
Bf0212			-	-	-	-	-	-	SI332	Ciclev10016442m	scaffold_2	9206686	9211152	C_unshiu_00004:mRNA_52.2	C_unshiu_00004	401860	406444	Carbonate dehydratase	AGI-06	117.593
Bf0213			-	-	-	-	-	-	SI097	Ciclev10000820m	scaffold_5	37693882	37699178	C_unshiu_00238:mRNA_2.1	C_unshiu_00238	14475	19398	DnaJ domain protein									RP-09	77.126
Bf0215			-	-	-	-	-	-		Ciclev10022088m	scaffold_3	50793520	50795340
Bf0216			-	-	-	-	-	-		Ciclev10031058m	scaffold_4	15058920	15066775
Bf0218			O	-	-	-	-	-	SI232	Ciclev10000452m	scaffold_5	36036990	36048487	C_unshiu_00406:mRNA_20.1	C_unshiu_00406	134274	145322	Isoamylase	AGI-09	53.205	KmG-09	37.847					RP-09	70.349
Bf0219			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Bf0221			-	-	-	-	-	-		Ciclev10005970m	scaffold_9	24195180	24198282	C_unshiu_00132:mRNA_22.1	C_unshiu_00132	211597	223530	Hypothetical protein	AGI-03	47.887							RP-03	37.193
Bf0224			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Bf0225			-	-	-	-	-	-		Ciclev10016071m	scaffold_2	3460370	3462174
Bf0226		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10008869m	scaffold_1	23654785	23658857	C_unshiu_00175:mRNA_30.1	C_unshiu_00175	321759	325671	SEC14 cytosolic factor	AGI-08	63.341
Bf0229			-	-	-	-	-	-	SI253	Ciclev10004848m	scaffold_9	17242218	17245901	C_unshiu_00122:mRNA_16.1	C_unshiu_00122	118693	122329	Selenium binding protein	AGI-03	46.274							RP-03	37.885
Bf0232			-	-	-	-	-	-		Ciclev10031191m	scaffold_4	21861774	21865635	C_unshiu_01346:mRNA_3.1	C_unshiu_01346	18206	22054	T-complex protein 1 subunit delta	AGI-07	67.250							RP-07	6.705
Bf0233		MDisagree by Marco analysis	O	-	-	-	-	-	SI359	Ciclev10019826m	scaffold_3	6502231	6504139	C_unshiu_00521:mRNA_1.1	C_unshiu_00521	2449	4274	Cytochrome P450 76C2	AGI-05	42.581							RP-05	27.235
Bf0401			-	-	-	-	-	-		Ciclev10019609m	scaffold_3	37906090	37910975
Bf0402			-	-	-	-	-	-		Ciclev10020232m	scaffold_3	9137249	9144663	C_unshiu_00058:mRNA_19.1	C_unshiu_00058	104866	110977	TRNA-specific adenosine deaminase-like protein 3	AGI-05	43.970
Bf0403			-	-	-	-	-	-
Bf0404			-	-	-	-	-	-
Bf0405			-	-	-	-	-	-		Ciclev10024721m	scaffold_7	2994525	3001770
Bf0406			-	-	-	-	-	-		Ciclev10026290m	scaffold_7	15773091	15776242
Bf0407			-	-	-	-	-	-		Ciclev10011592m	scaffold_6	10729034	10731466
Bf0408			-	-	-	-	-	-		Ciclev10024877m	scaffold_7	4843157	4848614
Bf0409			-	-	-	-	-	-						C_unshiu_00616:mRNA_6.1	C_unshiu_00616	72171	79153	Disease resistance protein (CC-NBS-LRR class) family protein	AGI-08	57.386
Bf0410			-	-	-	-	-	-		Ciclev10003680m	scaffold_5	32917826	32924241
Bf0411		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028317m	scaffold_8	21869065	21874083	C_unshiu_00500:mRNA_13.1	C_unshiu_00500	128482	133656	Sulfotransferase
Bf0412			-	-	-	-	-	-						No					AGI-08	29.534
Bf0413			-	-	-	-	-	-						C_unshiu_00293:mRNA_16.1	C_unshiu_00293	231743	233897	Hypothetical protein	AGI-09	86.996
Bf0414			-	-	-	-	-	-		Ciclev10014446m	scaffold_2	7719550	7723396
Bf0415			-	-	-	-	-	-						C_unshiu_00643:mRNA_7.1	C_unshiu_00643	115076	117637	BEL1-like homeodomain protein 1	AGI-08	46.736
Bf0416			-	-	-	-	-	-		Ciclev10020574m	scaffold_3	20762974	20770394
Bf0417			-	-	-	-	-	-		Ciclev10009842m	scaffold_1	693215	695933
Bf0418			-	-	-	-	-	-		Ciclev10002049m	scaffold_5	38489257	38490776
Bf0419			-	-	-	-	-	-		Ciclev10012995m	scaffold_6	8696694	8697639
Bf1176			-	-	-	-	-	-		Ciclev10033000m	scaffold_4	24312108	24313141
Bf1181			-	-	-	-	-	-
Bf1182.2			-	-	-	-	-	-						No					AGI-03	56.391
Bf1185			-	-	-	-	-	-		Ciclev10003304m	scaffold_5	40993520	40993992	No					AGI-09
Bf1186			-	-	-	-	-	-	SI245	Ciclev10012047m	scaffold_6	21912438	21917736	C_unshiu_00079:mRNA_40.1	C_unshiu_00079	278696	283911	R3H domain-containing protein 2
Bf1192			-	-	-	-	-	-		Ciclev10008160m	scaffold_1	10678653	10684627	C_unshiu_00242:mRNA_11.1	C_unshiu_00242	100038	105603	Casein kinase I-like protein	AGI-01	57.863
Bf1198			-	-	-	-	-	-
Bf1204			-	-	-	-	-	-	SI364	Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein
Bf1207			-	-	-	-	-	-		Ciclev10010835m	scaffold_1	22912695	22913798	C_unshiu_00103:mRNA_59.1	C_unshiu_00103	319187	320041	Hypothetical protein	AGI-01
Bf1208			-	-	-	-	-	-	SI108					No
Bf1243			-	-	-	-	-	-		Ciclev10032276m	scaffold_4	24657015	24660141	C_unshiu_00001:mRNA_262.1	C_unshiu_00001	1663630	1666687	U3 small nucleolar ribonucleoprotein IMP4	AGI-07	84.114
Bf1253			-	-	-	-	-	-
Cp0001			O	-	-	-	-	-		Ciclev10021700m	scaffold_3	47576415	47578036
Cp0002			O	-	-	-	-	-		Ciclev10020254m	scaffold_3	47583337	47586652
Cp0003			-	-	-	-	-	-		Ciclev10012377m	scaffold_6	11826472	11830875
Cp0004			O	-	-	-	-	-		Ciclev10020892m	scaffold_3	48753307	48755805
Cp0006			O	-	-	-	-	-		Ciclev10031874m	scaffold_4	14610897	14614381
Cp0007		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10022090m	scaffold_3	46924692	46927004
Cp0009			O	-	-	-	-	-		Ciclev10018574m	scaffold_3	46143241	46147293
Cp0010			O	-	-	-	-	-		Ciclev10020155m	scaffold_3	45604806	45609651
Cp0012			O	-	-	-	-	-		Ciclev10022248m	scaffold_3	44442841	44444278
Cp0013			-	-	-	-	-	-		Ciclev10023436m	scaffold_3	44834035	44836704
Cp0015			-	-	-	-	-	-		Ciclev10016927m	scaffold_2	17390389	17391229
Cp0016			-	-	-	-	-	-		Ciclev10008520m	scaffold_1	18117264	18119451
Cp0018			-	-	-	-	-	-		Ciclev10005068m	scaffold_9	5605470	5610840	C_unshiu_00057:mRNA_49.1	C_unshiu_00057	415460	428173	Putative E3 ubiquitin-protein ligase HERC1	AGI-03	44.848
Cp0021			O	-	-	-	-	-		Ciclev10015229m	scaffold_2	22305297	22307562
Cp0026			-	-	-	-	-	-		Ciclev10014741m	scaffold_2	24938686	24943643	C_unshiu_00472:mRNA_8.1	C_unshiu_00472	85278	89618	Putative ADP-glucose pyrophosphorylase small subunit	AGI-06	72.449
Cp0026b	Cp0026.2		O	-	-	-	-	-		Ciclev10024128m	scaffold_3	43354404	43355588
Cp0028			O	-	-	-	-	-		Ciclev10014471m	scaffold_2	11418331	11422116
Cp0030			O	-	-	-	-	-		Ciclev10019700m	scaffold_3	43815647	43818118	C_unshiu_00869:mRNA_1.1	C_unshiu_00869	176	1664	Phospholipase A1-Igamma1, chloroplastic	AGI-05	53.642
Cp0033			O	-	-	-	-	-		Ciclev10031724m	scaffold_4	23556540	23559896
Cp0039			O	-	-	-	-	-		Ciclev10032929m	scaffold_4	1549679	1551396	C_unshiu_00012:mRNA_98.1	C_unshiu_00012	722822	724539	LOB domain-containing protein 12	AGI-07	11.882
Cp0042			O	-	-	-	-	-		Ciclev10018175m	scaffold_2	33409222	33411202
Cp0045			-	-	-	-	-	-		Ciclev10008435m	scaffold_1	5194085	5198860
Cp0046			-	-	-	-	-	-		Ciclev10014361m	scaffold_2	7429310	7438670
Cp0047		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10021599m	scaffold_3	40918148	40922656	C_unshiu_00735:mRNA_16.1	C_unshiu_00735	120088	124350	Hypothetical protein	AGI-05	48.590
Cp0050			O	-	-	-	-	-		Ciclev10002804m	scaffold_5	32313299	32314734
Cp0051			O	-	-	-	-	-		Ciclev10003175m	scaffold_5	33322029	33325343
Cp0052		OOthers	O	-	-	-	-	-						C_unshiu_01597:mRNA_11.1	C_unshiu_01597	29471	42354	Glucose-6-phosphate dehydrogenase 4	AGI-08	96.035
Cp0056			O	-	-	-	-	-		Ciclev10000941m	scaffold_5	35065343	35070910
Cp0057			-	-	-	-	-	-		Ciclev10031335m	scaffold_4	24227703	24230754	C_unshiu_00001:mRNA_187.1	C_unshiu_00001	1244353	1247404	DUF1336 family protein	AGI-07	79.269
Cp0058			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Cp0059			O	-	-	-	-	-		Ciclev10031015m	scaffold_4	23075728	23081009	C_unshiu_00001:mRNA_13.1	C_unshiu_00001	89828	96147	Protein NLRC3	AGI-08	86.856
Cp0061			O	-	-	-	-	-		Ciclev10031220m	scaffold_4	22577317	22582276
Cp0062			O	-	-	-	-	-		Ciclev10032378m	scaffold_4	16107199	16109587	C_unshiu_01642:mRNA_2.1	C_unshiu_01642	16316	20085	Ribose-phosphate diphosphokinase	AGI-07	45.716
Cp0065			O	-	-	-	-	-		Ciclev10002793m	scaffold_5	8435123	8435971	C_unshiu_01044:mRNA_2.1	C_unshiu_01044	7117	7963	Ferredoxin	AGI-09	86.996
Cp0066			O	-	-	-	-	-		Ciclev10027599m	scaffold_7	5801208	5803835
Cp0067			O	-	-	-	-	-		Ciclev10009235m	scaffold_1	20056926	20059223
Cp0070			O	-	-	-	-	-		Ciclev10014440m	scaffold_2	35429103	35435228
Cp0071			-	-	-	-	-	-		Ciclev10014760m	scaffold_2	35681538	35687125
Cp0073			O	-	-	-	-	-		Ciclev10020501m	scaffold_3	5972288	5978062	C_unshiu_00997:mRNA_9.1	C_unshiu_00997	69257	75059	Transaldolase	AGI-05	34.924
Cp0076			O	-	-	-	-	-		Ciclev10021577m	scaffold_3	6329133	6332201	C_unshiu_01248:mRNA_3.1	C_unshiu_01248	39031	42057	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-05	35.411
Cp0077			O	-	-	-	-	-		Ciclev10015497m	scaffold_2	9849133	9852098	C_unshiu_00049:mRNA_29.1	C_unshiu_00049	210181	212829	Altered inheritance of mitochondria protein 32	AGI-08	54.867
Cp0080			O	-	-	-	-	-		Ciclev10015476m	scaffold_2	11598999	11601307
Cp0083			O	-	-	-	-	-		Ciclev10031889m	scaffold_4	19626061	19629792
Cp0085			O	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase	AGI-04	42.183
Cp0086		OOthers	O	-	-	-	-	-		Ciclev10032381m	scaffold_4	24154856	24157188
Cp0088			O	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723
Cp0089		Bno homozygous cultivar with minor allele	O	-	O	-	-	-		Ciclev10032543m	scaffold_4	23858830	23861090	C_unshiu_00001:mRNA_128.1	C_unshiu_00001	852968	856494	CAAX amino terminal protease family protein	AGI-07	77.194
Cp0093		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10032427m	scaffold_4	23596434	23599906	C_unshiu_00001:mRNA_89.1	C_unshiu_00001	587949	598235	Putative WRKY transcription factor 72	AGI-07	74.537
Cp0100			O	-	-	-	-	-		Ciclev10024866m	scaffold_7	10471136	10474241	C_unshiu_00924:mRNA_4.1	C_unshiu_00924	50269	52902	Tetratricopeptide repeat-like superfamily protein	AGI-02	14.111
Cp0101			-	-	-	-	-	-		Ciclev10015680m	scaffold_2	35349063	35350706
Cp0103			-	-	-	-	-	-		Ciclev10029116m	scaffold_8	16045535	16047020
Cp0106		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10020606m	scaffold_3	11867765	11869679	C_unshiu_00741:mRNA_6.1	C_unshiu_00741	44989	55203	Wall associated kinase-like 6, putative	AGI-03	40.566
Cp0113			-	-	-	-	-	-		Ciclev10028057m	scaffold_8	25022548	25027972
Cp0114			-	-	-	-	-	-		Ciclev10027515m	scaffold_7	15446269	15449214	C_unshiu_01960:mRNA_1.1	C_unshiu_01960	1400	4642	DS12 from 2D-PAGE of leaf protein, putative	AGI-02	21.337
Cp0125			-	-	-	-	-	-		Ciclev10018700m	scaffold_3	8718653	8721659
Cp0135			-	-	-	-	-	-		Ciclev10027108m	scaffold_7	923672	926367
Cp0137			-	-	-	-	-	-		Ciclev10000712m	scaffold_5	42139642	42144610
Cp0149			-	-	-	-	-	-		Ciclev10000231m	scaffold_5	37770343	37775957
Cp0150			-	-	-	-	-	-		Ciclev10001657m	scaffold_5	37622887	37624944
Cp0151			-	-	-	-	-	-		Ciclev10001710m	scaffold_5	36627644	36631386
Cp0153			-	-	-	-	-	-		Ciclev10000835m	scaffold_5	36196013	36199839
Cp0160			-	-	-	-	-	-		Ciclev10019883m	scaffold_3	21940551	21944032	C_unshiu_00272:mRNA_20.1	C_unshiu_00272	187755	191248	Endoglucanase	AGI-05	41.267
Cp0168			-	-	-	-	-	-
Cp0185			-	-	-	-	-	-		Ciclev10002024m	scaffold_5	34558362	34564638	C_unshiu_00190:mRNA_33.1	C_unshiu_00190	230947	237587	Adenine phosphoribosyltransferase	AGI-03	51.129
Cp0190		OOthers	-	-	-	-	-	-		Ciclev10023646m	scaffold_3	18648426	18650443	C_unshiu_00618:mRNA_5.1	C_unshiu_00618	20273	22297	UPF0426 protein, chloroplastic	AGI-06	27.617
Cp0207			-	-	-	-	-	-		Ciclev10015296m	scaffold_2	31851698	31857541
Cp0214		OOthers	-	-	-	-	-	-		Ciclev10016075m	scaffold_2	29732249	29735969	C_unshiu_00073:mRNA_25.1	C_unshiu_00073	178507	182191	MOSC domain-containing protein 2, mitochondrial	AGI-06	46.660
Cp0221		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10016539m	scaffold_2	30648531	30649856	C_unshiu_00125:mRNA_61.1	C_unshiu_00125	360098	361069	Photosystem I reaction center subunit III
Cp0224			-	-	-	-	-	-
Cp0230			-	-	-	-	-	-		Ciclev10001047m	scaffold_5	26935357	26947618
Cp0233			-	-	-	-	-	-		Ciclev10031694m	scaffold_4	11210879	11216325	C_unshiu_00061:mRNA_64.1	C_unshiu_00061	550725	556167	Ribose-phosphate pyrophosphokinase 4	AGI-07	37.826
Cp0234			-	-	-	-	-	-		Ciclev10004626m	scaffold_9	29874798	29879735
Cp0237			-	-	-	-	-	-		Ciclev10033007m	scaffold_4	10652381	10655082	C_unshiu_00483:mRNA_11.1	C_unshiu_00483	100177	109515	Protein LSD1	AGI-07	35.506
Cp0239			-	-	-	-	-	-		Ciclev10032871m	scaffold_4	10615005	10617641
Cp0243			-	-	-	-	-	-		Ciclev10019694m	scaffold_3	1582675	1586208
Cp0247			-	-	-	-	-	-		Ciclev10001611m	scaffold_5	39241458	39245153
Cp0249			-	-	-	-	-	-		Ciclev10001084m	scaffold_5	39480647	39484776	C_unshiu_00457:mRNA_14.1	C_unshiu_00457	96540	99356	Acetyltransferase component of pyruvate dehydrogenase complex	AGI-09	41.336
Cp0257			-	-	-	-	-	-		Ciclev10001536m	scaffold_5	36526073	36528589	C_unshiu_00657:mRNA_4.1	C_unshiu_00657	52199	54744	Trehalose-phosphatase	AGI-09	48.390
Cp0258			-	-	-	-	-	-		Ciclev10000007m	scaffold_5	36660141	36674263
Cp0266			-	-	-	-	-	-		Ciclev10001114m	scaffold_5	42875803	42879044
Cp0277			-	-	-	-	-	-		Ciclev10008086m	scaffold_1	7776970	7783395
Cp0278			-	-	-	-	-	-		Ciclev10022561m	scaffold_3	24750794	24752907	C_unshiu_00286:mRNA_8.1	C_unshiu_00286	73068	81236	Hypothetical protein	AGI-04	122.142
Cp0280			-	-	-	-	-	-		Ciclev10020337m	scaffold_3	14878427	14882285
Cp0281			-	-	-	-	-	-		Ciclev10001600m	scaffold_5	40628244	40630241
Cp0294			-	-	-	-	-	-		Ciclev10001042m	scaffold_5	34414461	34417249
Cp0297			-	-	-	-	-	-		Ciclev10028989m	scaffold_8	2135445	2138606	C_unshiu_00024:mRNA_26.2	C_unshiu_00024	197656	201866	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-08	78.209
Cp0301			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311
Cp0303			-	-	-	-	-	-		Ciclev10000422m	scaffold_5	42541637	42545268
Cp0313			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Cp0318			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Cp0319			-	-	-	-	-	-		Ciclev10021170m	scaffold_3	14993579	14994805
Cp0321		AAvailable marker	-	-	-	-	-	O		Ciclev10026722m	scaffold_7	8898626	8899984	C_unshiu_00221:mRNA_33.1	C_unshiu_00221	211111	214358	Hypothetical protein
Cp0336			-	-	-	-	-	-		Ciclev10004655m	scaffold_9	31244440	31250356	C_unshiu_00003:mRNA_113.1	C_unshiu_00003	809668	815079	ABC transporter D family member 2, chloroplastic	AGI-03	79.515
Cp0345			-	-	-	-	-	-		Ciclev10002001m	scaffold_5	31874384	31876484
Cp0363			-	-	-	-	-	-		Ciclev10023762m	scaffold_3	46510039	46512543
Cp0381			-	-	-	-	-	-		Ciclev10015511m	scaffold_2	32155295	32158290
Cp0384		AAvailable marker	O	-	-	-	O	O		Ciclev10015162m	scaffold_2	35422598	35425980	C_unshiu_00048:mRNA_23.2	C_unshiu_00048	111764	114820	APS reductase	AGI-06	19.002
Cp0401			-	-	-	-	-	-		Ciclev10022489m	scaffold_3	1056116	1057706
Cp0403			-	-	-	-	-	-		Ciclev10022161m	scaffold_3	749176	751194
Cp0411			-	-	-	-	-	-		Ciclev10012081m	scaffold_6	7489746	7495735
Cp0415			-	-	-	-	-	-		Ciclev10011681m	scaffold_6	22213544	22219300	C_unshiu_00074:mRNA_13.1	C_unshiu_00074	81301	86950	ATA15 protein	AGI-04	50.134
Cp0419		AAvailable marker	-	O	-	-	O	O		Ciclev10002215m	scaffold_5	28815314	28816638	C_unshiu_00758:mRNA_1.1	C_unshiu_00758	794	4329	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-09	88.739							SA-09	44.226
Cp0427			-	-	-	-	-	-		Ciclev10009075m	scaffold_1	738477	743395
Cp0431		AAvailable marker	O	-	-	-	O	O		Ciclev10015731m	scaffold_2	27084177	27089027	C_unshiu_00017:mRNA_35.1	C_unshiu_00017	248152	252850	E3 ubiquitin protein ligase RIE1	AGI-06	60.660
Cp0439			-	-	-	-	-	-		Ciclev10032902m	scaffold_4	19467669	19468803
Cp0450		OOthers	-	-	-	-	-	-		Ciclev10001900m	scaffold_5	37478179	37482337
Cp0451			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806
Cp0452		AAvailable marker	-	-	-	-	O	O		Ciclev10030661m	scaffold_4	23575399	23582495	C_unshiu_00001:mRNA_85.1	C_unshiu_00001	566935	573821	Alpha-amylase-like 3 isoform 1	AGI-07	75.350
Cp0454			-	-	-	-	-	-		Ciclev10030551m	scaffold_4	23200936	23206254	C_unshiu_00001:mRNA_32.1	C_unshiu_00001	214996	218740	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic	AGI-07	73.034
Cp0457			-	-	-	-	-	-		Ciclev10030910m	scaffold_4	22253189	22257152
Cp0458			-	-	-	-	-	-		Ciclev10014634m	scaffold_2	9744574	9752276
Cp0459			-	-	-	-	-	-		Ciclev10016822m	scaffold_2	27549660	27551146	C_unshiu_00017:mRNA_86.1	C_unshiu_00017	707192	708314	NADH dehydrogenase-like complex L	AGI-06	74.140
Cp0464			-	-	-	-	-	-		Ciclev10021386m	scaffold_3	20750712	20753437
Cp0468			-	-	-	-	-	-		Ciclev10001972m	scaffold_5	39459457	39464982
Cp0475			-	-	-	-	-	-		Ciclev10008029m	scaffold_1	11512415	11514434
Cp0481			-	-	-	-	-	-		Ciclev10030851m	scaffold_4	6970624	6975096
Cp0500			-	-	-	-	-	-		Ciclev10022359m	scaffold_3	2292399	2293655
Cp0506		AAvailable marker	O	-	-	-	O	O		Ciclev10001978m	scaffold_5	40832603	40834625	No					AGI-09	38.656
Cp0510			-	-	-	-	-	-		Ciclev10002669m	scaffold_5	41208820	41211050
Cp0518			-	-	-	-	-	-		Ciclev10001692m	scaffold_5	42294270	42295612
Cp0519			-	-	-	-	-	-		Ciclev10002698m	scaffold_5	42326135	42327438
Cp0522			-	-	-	-	-	-		Ciclev10000761m	scaffold_5	43016598	43020200
Cp0530			-	-	-	-	-	-		Ciclev10001462m	scaffold_5	37517043	37521275
Cp0532			-	-	-	-	-	-		Ciclev10020319m	scaffold_3	30393811	30398972	C_unshiu_00501:mRNA_15.1	C_unshiu_00501	133280	137847	Solanesyl diphosphate synthase	AGI-05	42.168
Cp0537		AAvailable marker	O	-	-	-	O	O		Ciclev10016779m	scaffold_2	34189216	34193815	C_unshiu_00002:mRNA_71.2	C_unshiu_00002	543564	547918	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	AGI-06	25.930
Cp0540			-	-	-	-	-	-		Ciclev10020181m	scaffold_3	10427313	10435293	C_unshiu_02340:mRNA_1.1	C_unshiu_02340	2005	8306	DNA repair protein reca, putative	AGI-05	42.191
Cp0556			-	-	-	-	-	-		Ciclev10025170m	scaffold_7	10484413	10489121
Cp0564			-	-	-	-	-	-		Ciclev10015744m	scaffold_2	28189350	28194237
Cp0566			-	-	-	-	-	-		Ciclev10014450m	scaffold_2	28732941	28736344
Cp0571			-	-	-	-	-	-		Ciclev10004533m	scaffold_9	11993282	11999324
Cp0589			-	-	-	-	-	-		Ciclev10016280m	scaffold_2	23891814	23893095
Cp0591			-	-	-	-	-	-		Ciclev10017197m	scaffold_2	24336809	24337802
Cp0592			-	-	-	-	-	-		Ciclev10015082m	scaffold_2	5167853	5171721
Cp0601			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Cp0603		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10028998m	scaffold_8	2349655	2354496	C_unshiu_00363:mRNA_34.1	C_unshiu_00363	217631	222409	Hop-interacting protein THI043	AGI-08	75.684
Cp0605			-	-	-	-	-	-		Ciclev10029105m	scaffold_8	2627683	2630058
Cp0632		AAvailable marker	O	-	-	-	O	O		Ciclev10007941m	scaffold_1	27698934	27703620	C_unshiu_00237:mRNA_7.1	C_unshiu_00237	40930	45531	Protein translocase subunit SecY	AGI-08	56.724
Cp0634			-	-	-	-	-	-		Ciclev10031740m	scaffold_4	15660463	15665838	C_unshiu_00824:mRNA_8.1	C_unshiu_00824	96745	119992	Hypothetical protein	AGI-07	32.589
Cp0635		AAvailable marker	O	-	O	-	O	O						C_unshiu_00337:mRNA_4.1	C_unshiu_00337	11596	15307	50S ribosomal protein L4	AGI-06	17.029
Cp0646			-	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265
Cp0655			-	-	-	-	-	-		Ciclev10028195m	scaffold_8	5496424	5502056
Cp0661			-	-	-	-	-	-		Ciclev10025609m	scaffold_7	5668379	5673913
Cp0671		AAvailable marker	-	-	-	-	O	O		Ciclev10009489m	scaffold_1	28353948	28356507	C_unshiu_00590:mRNA_26.1	C_unshiu_00590	165626	168046	UPF0133 protein	AGI-01	36.113
Cp0672			-	-	-	-	-	-		Ciclev10007769m	scaffold_1	28262202	28267878	C_unshiu_00005:mRNA_26.1	C_unshiu_00005	170218	174432	Putative eukaryotic translation initiation factor 4 gamma	AGI-01	101.472
Cp0675		AAvailable marker	O	-	-	-	O	O		Ciclev10030633m	scaffold_4	20294240	20301426	C_unshiu_00015:mRNA_33.1	C_unshiu_00015	302440	309360	DNA-directed RNA polymerase	AGI-07	59.793
Cp0696			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Cp0699			-	-	-	-	-	-		Ciclev10009114m	scaffold_1	4522022	4524821
Cp0701			-	-	-	-	-	-		Ciclev10015579m	scaffold_2	8539410	8545538
Cp0703			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin	AGI-08	43.089
Cp0705			-	-	-	-	-	-		Ciclev10029127m	scaffold_8	20079720	20084101
Cp0709			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
Cp0716			-	-	-	-	-	-		Ciclev10009855m	scaffold_1	5435165	5436509
Cp0717		OOthers	-	-	-	-	-	-		Ciclev10020167m	scaffold_3	45807729	45812484
Cp0719			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019	C_unshiu_02393:mRNA_2.1	C_unshiu_02393	18637	23537	Inner membrane protein ALBINO3	AGI-08	12.793
Cp0739			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Cp0741		AAvailable marker	O	-	-	-	O	O		Ciclev10008230m	scaffold_1	3746864	3749903	C_unshiu_00055:mRNA_22.1	C_unshiu_00055	168281	172005	Ferrochelatase	AGI-01	75.964
Cp0742			-	-	-	-	-	-		Ciclev10024455m	scaffold_3	43801281	43801864
Cp0745			-	-	-	-	-	-		Ciclev10014471m	scaffold_2	11418331	11422116
Cp0747			-	-	-	-	-	-		Ciclev10015418m	scaffold_2	11084960	11088767	C_unshiu_00184:mRNA_32.1	C_unshiu_00184	282295	285277	ATP synthase protein I	AGI-09	85.816
Cp0748			-	-	-	-	-	-		Ciclev10022288m	scaffold_3	34673451	34674900	C_unshiu_00669:mRNA_14.1	C_unshiu_00669	103814	104779	Light-dependent short hypocotyls protein	AGI-01	33.562
Cp0758			-	-	-	-	-	-		Ciclev10015073m	scaffold_2	29452639	29459747
Cp0781		AAvailable marker	-	-	-	-	O	O		Ciclev10021469m	scaffold_3	41043663	41046480	C_unshiu_00305:mRNA_28.1	C_unshiu_00305	251599	254198	Thioredoxin-like 7 family protein	AGI-05	50.294
Cp0784			-	-	-	-	-	-		Ciclev10016057m	scaffold_2	33561487	33563802
Cp0787			-	-	-	-	-	-		Ciclev10011650m	scaffold_6	17402877	17405928
Cp0813			-	-	-	-	-	-	SI047	Ciclev10011980m	scaffold_6	20638049	20641557	C_unshiu_00046:mRNA_46.1	C_unshiu_00046	406041	409549	Alpha/beta fold hydrolase	AGI-04	58.655
Cp0815			-	-	-	-	-	-		Ciclev10012928m	scaffold_6	20956326	20958294
Cp0822			-	-	-	-	-	-		Ciclev10028025m	scaffold_8	22475922	22481806
Cp0825			-	-	-	-	-	-		Ciclev10013683m	scaffold_6	11898827	11905679
Cp0832			-	-	-	-	-	-		Ciclev10021626m	scaffold_3	20931939	20936268
Cp0835			-	-	-	-	-	-		Ciclev10019790m	scaffold_3	8640420	8644420
Cp0839			-	-	-	-	-	-		Ciclev10011239m	scaffold_6	15703559	15706187
Cp0844			-	-	-	-	-	-		Ciclev10012026m	scaffold_6	16429543	16431668
Cp0848			-	-	-	-	-	-		Ciclev10012679m	scaffold_6	17002904	17003946
Cp0849			-	-	-	-	-	-	SI355	Ciclev10012425m	scaffold_6	17651466	17653457	C_unshiu_00090:mRNA_56.2	C_unshiu_00090	364770	367591	Non-green plastid inner envelope membrane protein
Cp0861			-	-	-	-	-	-		Ciclev10032618m	scaffold_4	6335138	6336149
Cp0870		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI338	Ciclev10031974m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	5.180
Cp0895		AAvailable marker	-	-	-	-	O	O		Ciclev10011406m	scaffold_6	19241700	19246874	C_unshiu_00089:mRNA_3.1	C_unshiu_00089	9945	14749	ATP-dependent RNA helicase	AGI-04	67.375
Cp0900			-	-	-	-	-	-		Ciclev10017707m	scaffold_2	11381917	11385787
Cp0912			-	-	-	-	-	-		Ciclev10001835m	scaffold_5	30655731	30659789
Cp0920			-	-	-	-	-	-		Ciclev10020914m	scaffold_3	25452062	25455844
Cp0921		OOthers	-	-	-	-	-	-		Ciclev10022149m	scaffold_3	25448858	25451858
Cp0933		OOthers	-	-	-	-	-	-		Ciclev10019734m	scaffold_3	49821906	49825730	C_unshiu_00014:mRNA_26.1	C_unshiu_00014	159299	162719	Hypothetical protein	AGI-03	47.283
Cp0934			-	-	-	-	-	-		Ciclev10001707m	scaffold_5	34294853	34297047
Cp0955			-	-	-	-	-	-		Ciclev10011439m	scaffold_6	25101237	25104868
Cp0962			-	-	-	-	-	-		Ciclev10016442m	scaffold_2	9206686	9211152
Cp0965			-	-	-	-	-	-		Ciclev10020405m	scaffold_3	3201206	3204377
Cp0973		OOthers	-	-	-	-	-	-		Ciclev10013409m	scaffold_6	8193393	8195764	C_unshiu_00407:mRNA_4.1	C_unshiu_00407	55425	57717	Thioredoxin F-type, chloroplastic
Cp0974			-	-	-	-	-	-		Ciclev10011578m	scaffold_6	8029488	8035109	C_unshiu_00711:mRNA_6.1	C_unshiu_00711	128510	138133	Hypothetical protein	AGI-04	107.018
Cp0975		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10012312m	scaffold_6	7924189	7928192	C_unshiu_00631:mRNA_15.1	C_unshiu_00631	149702	153660	Isopentenyl pyrophosphate isomerase	AGI-07	29.152
Cp0980			-	-	-	-	-	-		Ciclev10024548m	scaffold_3	41307776	41309278
Cp0996		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI340	Ciclev10004474m	scaffold_9	543444	546746	C_unshiu_00007:mRNA_105.1	C_unshiu_00007	630727	633783	Neutral/alkaline invertase	AGI-03	9.366
Cp1008			-	-	-	-	-	-		Ciclev10031135m	scaffold_4	16519046	16521918
Cp1010			-	-	-	-	-	-
Cp1011			-	-	-	-	-	-		Ciclev10016354m	scaffold_2	25346439	25350875	C_unshiu_00087:mRNA_55.1	C_unshiu_00087	398683	402763	ZZ-type zinc finger-containing 3	AGI-09	115.692
Cp1031		AAvailable marker	-	O	-	-	O	O		Ciclev10005224m	scaffold_9	2324313	2328666	C_unshiu_00394:mRNA_4.1	C_unshiu_00394	11970	16480	Putative E3 ubiquitin-protein ligase MARCH10	AGI-03	18.610
Cp1034		AtAvailable marker	-	-	-	-	O	O		Ciclev10005575m	scaffold_9	21107894	21109983	C_unshiu_00160:mRNA_22.1	C_unshiu_00160	182942	184946	Putative calcium-binding protein CML48	AGI-03	46.760
Cp1044		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10015927m	scaffold_2	4354278	4358516	C_unshiu_00062:mRNA_38.1	C_unshiu_00062	326045	332995	Iron-sulfur cluster formation ABC transporter ATP-binding subunit	AGI-07	39.420
Cp1050			-	-	-	-	-	-		Ciclev10032471m	scaffold_4	1537835	1540818
Cp1056			-	-	-	-	-	-		Ciclev10012459m	scaffold_6	20024370	20027538
Cp1067			-	-	-	-	-	-		Ciclev10014572m	scaffold_2	188504	192741
Cp1081			-	-	-	-	-	-		Ciclev10024992m	scaffold_7	7826603	7829404
Cp1084		OOthers	-	-	-	-	-	-						C_unshiu_01090:mRNA_3.1	C_unshiu_01090	23084	26817	Sesquiterpene synthase	AGI-08	44.577
Cp1085			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658	C_unshiu_00025:mRNA_42.1	C_unshiu_00025	337060	338142	Putative geranylgeranyl pyrophosphate synthase 3-like	AGI-02	70.082
Cp1086			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Cp1093			-	-	-	-	-	-		Ciclev10009636m	scaffold_1	16696979	16699623
Cp1111		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10024860m	scaffold_7	8603450	8610239	C_unshiu_00290:mRNA_28.1	C_unshiu_00290	241335	248051	Cell division protein ftsH, putative isoform 1	AGI-02	5.054
Cp1113			-	-	-	-	-	-		Ciclev10004638m	scaffold_9	987368	992630
Cp1114			-	-	-	-	-	-		Ciclev10004644m	scaffold_9	870926	875408
Cp1115			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Cp1143		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10000651m	scaffold_5	39858531	39862402	C_unshiu_00096:mRNA_9.1	C_unshiu_00096	70713	73505	Phosphoglycerate dehydrogenase	AGI-09	42.158
Cp1144		OOthers	-	-	-	-	-	-		Ciclev10028086m	scaffold_8	2649991	2655756	C_unshiu_00152:mRNA_43.1	C_unshiu_00152	288550	294174	Sodium:hydrogen antiporter 1 isoform 1	AGI-08	70.995
Cp1162		AAvailable marker	-	-	-	-	O	O		Ciclev10001345m	scaffold_5	35908181	35912917	C_unshiu_00255:mRNA_35.1	C_unshiu_00255	260170	264872	Phosphoribosylaminoimidazolesuccinocarboxamide synthase	AGI-09	53.232							RP-09	69.673
Cp1163			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Cp1177			-	-	-	-	-	-		Ciclev10006006m	scaffold_9	4116356	4117315
Cp1184			-	-	-	-	-	-		Ciclev10005685m	scaffold_9	17809957	17817998
Cp1196			-	-	-	-	-	-		Ciclev10031889m	scaffold_4	19626061	19629792
Cp1200		MDisagree by Marco analysis	O	-	-	-	-	-						C_unshiu_00810:mRNA_8.1	C_unshiu_00810	99220	102123	Myrcene synthase, chloroplastic	AGI-08	38.604
Cp1201			-	-	-	-	-	-		Ciclev10031397m	scaffold_4	19416844	19420948
Cp1213			-	-	-	-	-	-		Ciclev10015476m	scaffold_2	11598999	11601307
Cp1216		AAvailable marker	-	-	-	-	O	O		Ciclev10017113m	scaffold_2	12112790	12113903	C_unshiu_00026:mRNA_6.1	C_unshiu_00026	46658	47677	CCR protein	AGI-06	76.905
Cp1221			-	-	-	-	-	-		Ciclev10016867m	scaffold_2	13627656	13629444
Cp1223			-	-	-	-	-	-		Ciclev10019033m	scaffold_3	50559205	50563745
Cp1224			-	-	-	-	-	-		Ciclev10016280m	scaffold_2	23891814	23893095
Cp1225			-	-	-	-	-	-		Ciclev10025660m	scaffold_7	17208075	17211871
Cp1252			-	-	-	-	-	-		Ciclev10000164m	scaffold_5	30617746	30629437
Cp1254			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Cp1257			-	-	-	-	-	-		Ciclev10014209m	scaffold_2	5582927	5587253
Cp1267		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011346m	scaffold_6	7983788	7991526	C_unshiu_02325:mRNA_1.1	C_unshiu_02325	1642	9359	Riboflavin biosynthesis protein RibD	AGI-08	94.382
Cp1268			-	-	-	-	-	-		Ciclev10021861m	scaffold_3	7327436	7329167	C_unshiu_00199:mRNA_13.1	C_unshiu_00199	87134	88461	Light-harvesting complex I protein subunit a4	AGI-05	44.864
Cp1278			-	-	-	-	-	-		Ciclev10030907m	scaffold_4	12263755	12266130
Cp1279		AAvailable marker	-	-	-	-	O	O		Ciclev10031414m	scaffold_4	12900777	12903692	C_unshiu_00461:mRNA_17.1	C_unshiu_00461	144878	147555	Ornithine aminotransferase	AGI-07	40.184
Cp1283			-	-	-	-	-	-		Ciclev10001817m	scaffold_5	34891100	34894176
Cp1292			-	-	-	-	-	-		Ciclev10025390m	scaffold_7	2246732	2249558
Cp1302			-	-	-	-	-	-		Ciclev10031853m	scaffold_4	7407834	7414015
Cp1308		AAvailable marker	-	O	-	-	O	O		Ciclev10011420m	scaffold_6	6329421	6335005	C_unshiu_00147:mRNA_29.1	C_unshiu_00147	247701	253232	Unspecific monooxygenase	AGI-04	101.201
Cp1323			-	-	-	-	-	-		Ciclev10012716m	scaffold_6	17992563	17993671
Cp1330			-	-	-	-	-	-		Ciclev10019667m	scaffold_3	14898168	14903449
Cp1334		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_01048:mRNA_12.1	C_unshiu_01048	87386	90179	Phosphoribosylformylglycinamidine cyclo-ligase	AGI-03	46.968
Cp1336			-	-	-	-	-	-		Ciclev10032697m	scaffold_4	3335945	3338632
Cp1340			-	-	-	-	-	-		Ciclev10032342m	scaffold_4	125954	131376
Cp1352			-	-	-	-	-	-		Ciclev10032297m	scaffold_4	8198787	8204052
Cp1361		AAvailable marker	-	-	-	-	O	O		Ciclev10013042m	scaffold_6	21714716	21717652	C_unshiu_01167:mRNA_14.1	C_unshiu_01167	79036	81808	50S ribosomal 5 alpha, chloroplastic	AGI-04	52.740
Cp1362			-	-	-	-	-	-		Ciclev10011842m	scaffold_6	21598429	21600967
Cp1366		AAvailable marker	-	-	-	-	-	O
Cp1369			-	-	-	-	-	-		Ciclev10031159m	scaffold_4	24737050	24741836
Cp1405			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Cp1407			-	-	-	-	-	-		Ciclev10031886m	scaffold_4	21243085	21244983
Cp1412			-	-	-	-	-	-		Ciclev10021694m	scaffold_3	47217428	47221472
Cp1427		AAvailable marker	-	-	-	-	O	O		Ciclev10021746m	scaffold_3	45576863	45579197	C_unshiu_00326:mRNA_5.1	C_unshiu_00326	23073	25265	Bifunctional protein FolD	AGI-05	58.917
Cp1428			-	-	-	-	-	-		Ciclev10020642m	scaffold_3	49195569	49198341
Cp1436			-	-	-	-	-	-		Ciclev10021696m	scaffold_3	48720837	48722931
Cp1439			-	-	-	-	-	-		Ciclev10019587m	scaffold_3	47139756	47144124
Cp1441			-	-	-	-	-	-		Ciclev10000384m	scaffold_5	37735873	37744747
Cp1474			-	-	-	-	-	-		Ciclev10001462m	scaffold_5	37517043	37521275
Cp1477			-	-	-	-	-	-		Ciclev10001770m	scaffold_5	36095844	36099890	C_unshiu_01173:mRNA_9.1	C_unshiu_01173	62977	66775	Thylakoid lumenal 29 kDa protein, chloroplastic	AGI-09	54.123
Cp1483			-	-	-	-	-	-		Ciclev10020574m	scaffold_3	20762974	20770394	C_unshiu_00692:mRNA_14.1	C_unshiu_00692	122321	129331	Abhydrolase domain-containing protein 11	AGI-05	41.162
Cp1487			-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121
Cp1488	Cp1488.1		-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239
Cp1488.2			-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239
Cp1489			-	-	-	-	-	-		Ciclev10021127m	scaffold_3	6577360	6582553
Cp1490			-	-	-	-	-	-		Ciclev10021970m	scaffold_3	6369398	6372018
Cp1500			-	-	-	-	-	-		Ciclev10004776m	scaffold_9	7080249	7086989	C_unshiu_00161:mRNA_19.1	C_unshiu_00161	150519	157206	3-isopropylmalate dehydratase large subunit	AGI-03	46.274
Cp1501			-	-	-	-	-	-		Ciclev10017197m	scaffold_2	24336809	24337802
Cp1523		AAvailable marker	-	-	-	-	O	O		Ciclev10005519m	scaffold_9	1356758	1359310	C_unshiu_01431:mRNA_7.1	C_unshiu_01431	31518	37086	Hypothetical protein	AGI-03	12.606
Cp1529			-	-	-	-	-	-		Ciclev10021432m	scaffold_3	4840947	4846859
Cp1533			-	-	-	-	-	-		Ciclev10021868m	scaffold_3	4831751	4834270	C_unshiu_00768:mRNA_14.1	C_unshiu_00768	110682	113065	Lil3 protein	AGI-05	29.039
Cp1556		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10018756m	scaffold_3	21432494	21440948	C_unshiu_00175:mRNA_9.1	C_unshiu_00175	91338	99600	Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic	AGI-05	40.337
Cp1567			-	-	-	-	-	-		Ciclev10014857m	scaffold_2	31148849	31150616
Cp1572			-	-	-	-	-	-		Ciclev10014734m	scaffold_2	33198880	33205481
Cp1577			-	-	-	-	-	-		Ciclev10015546m	scaffold_2	35732486	35736448
Cp1584		AAvailable marker	-	-	-	-	-	O		Ciclev10031523m	scaffold_4	201556	204527	C_unshiu_00168:mRNA_36.1	C_unshiu_00168	285304	287905	Cell division cycle 20.1, cofactor of APC complex
Cp1585		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein
Cp1586			-	-	-	-	-	-		Ciclev10019696m	scaffold_3	1881156	1887598
Cp1592			-	-	-	-	-	-		Ciclev10002032m	scaffold_5	41609584	41613450
Cp1596			-	-	-	-	-	-		Ciclev10000953m	scaffold_5	35757162	35762784
Cp1598		AAvailable marker	-	-	-	-	O	O		Ciclev10021001m	scaffold_3	3802387	3805494	C_unshiu_00849:mRNA_13.2	C_unshiu_00849	72935	75824	31 kDa ribonucleoprotein	AGI-05	12.715
Cp1607			-	-	-	-	-	-		Ciclev10005637m	scaffold_9	25860665	25863110
Cp1612			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Cp1614			-	-	-	-	-	-		Ciclev10008763m	scaffold_1	23876791	23880665
Cp1617			-	-	-	-	-	-		Ciclev10015460m	scaffold_2	22436685	22438478
Cp1624		AAvailable marker	-	O	-	O	O	O	SI307	Ciclev10008537m	scaffold_1	18068297	18070262	C_unshiu_00187:mRNA_17.1	C_unshiu_00187	99220	100762	CBS domain-containing protein CBSX5	AGI-01	58.420	KmG-01	53.054
Cp1627		AAvailable marker	-	-	-	-	O	O		Ciclev10022024m	scaffold_3	13309398	13310636	C_unshiu_00431:mRNA_6.1	C_unshiu_00431	44507	45451	Chloroplast small heat shock protein	AGI-05	41.272
Cp1628			-	-	-	-	-	-		Ciclev10021963m	scaffold_3	12822911	12825620	C_unshiu_02666:mRNA_2.1	C_unshiu_02666	10104	12687	Rhodanese/cell cycle control phosphatase superfamily protein	AGI-05	41.272
Cp1629			-	-	-	-	-	-		Ciclev10016703m	scaffold_2	29783148	29785224
Cp1644			-	-	-	-	-	-		Ciclev10008029m	scaffold_1	11512415	11514434
Cp1666			-	-	-	-	-	-		Ciclev10008009m	scaffold_1	1149150	1151996
Cp1670			-	-	-	-	-	-		Ciclev10009435m	scaffold_1	1709131	1710064
Cp1671			-	-	-	-	-	-		Ciclev10025512m	scaffold_7	4882520	4888243
Cp1675			-	-	-	-	-	-		Ciclev10002150m	scaffold_5	40226352	40230560
Cp1688			-	-	-	-	-	-		Ciclev10026380m	scaffold_7	3456105	3460607
Cp1694			-	-	-	-	-	-		Ciclev10028384m	scaffold_8	4292180	4295696
Cp1697		AAvailable marker	-	-	-	-	O	O		Ciclev10028645m	scaffold_8	966124	968846	C_unshiu_00041:mRNA_89.1	C_unshiu_00041	555334	558046	Urease accessory protein UreH	AGI-02	73.770
Cp1701			-	-	-	-	-	-		Ciclev10025659m	scaffold_7	303829	305426
Cp1709		AAvailable marker	-	-	-	-	-	O		Ciclev10025382m	scaffold_7	1450748	1452915	C_unshiu_00624:mRNA_14.1	C_unshiu_00624	137579	139378	Cytochrome P450 84A1
Cp1715			-	-	-	-	-	-		Ciclev10025487m	scaffold_7	2713510	2717859
Cp1716		AAvailable marker	-	-	-	-	O	O		Ciclev10026303m	scaffold_7	2607670	2609433	C_unshiu_00025:mRNA_77.1	C_unshiu_00025	553145	554831	Thiol disulfide interchange protein	AGI-02	70.068
Cp1719			-	-	-	-	-	-		Ciclev10025341m	scaffold_7	3940274	3943841
Cp1723			-	-	-	-	-	-		Ciclev10025728m	scaffold_7	5035429	5038431
Cp1736			-	-	-	-	-	-		Ciclev10026179m	scaffold_7	5640058	5643125	C_unshiu_00761:mRNA_15.2	C_unshiu_00761	89991	92755	Protein CbbY	AGI-02	50.716
Cp1738		AAvailable marker	-	-	-	-	-	O	SI237,SI296	Ciclev10025941m	scaffold_7	5388458	5389981	C_unshiu_00303:mRNA_12.1	C_unshiu_00303	100918	102276	Putative clathrin assembly protein
Cp1741			-	-	-	-	-	-		Ciclev10011473m	scaffold_6	15803864	15809998
Cp1745			-	-	-	-	-	-		Ciclev10011480m	scaffold_6	16903668	16906771
Cp1771			-	-	-	-	-	-		Ciclev10011285m	scaffold_6	20404516	20411982
Cp1772		OOthers	-	-	-	-	-	-		Ciclev10004137m	scaffold_9	20009769	20033079
Cp1779			-	-	-	-	-	-		Ciclev10014382m	scaffold_2	6927081	6932080
Cp1791		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10027428m	scaffold_7	11604464	11607028	C_unshiu_00582:mRNA_4.1	C_unshiu_00582	10067	11470	NBS-LRR type disease resistance protein	AGI-02	12.969
Cp1796			-	-	-	-	-	-		Ciclev10031010m	scaffold_4	1058825	1062698
Cp1798		AAvailable marker	-	-	-	-	O	O		Ciclev10012134m	scaffold_6	20319677	20323198	C_unshiu_00215:mRNA_34.1	C_unshiu_00215	205164	208490	Orange 2	AGI-04	60.291
Cp1815		OOthers	-	-	-	-	-	-		Ciclev10022373m	scaffold_3	8256398	8257886	C_unshiu_00154:mRNA_28.1	C_unshiu_00154	274299	275412	Wiskott-Aldrich syndrome protein family member 2	AGI-05	51.501
Cp1817			-	-	-	-	-	-		Ciclev10018833m	scaffold_3	7163697	7167661
Cp1819			-	-	-	-	-	-		Ciclev10000418m	scaffold_5	7288321	7296238
Cp1851			-	-	-	-	-	-		Ciclev10014769m	scaffold_2	6840743	6844063
Cp1852			-	-	-	-	-	-		Ciclev10010530m	scaffold_1	22711668	22715696	C_unshiu_00103:mRNA_19.2	C_unshiu_00103	116559	121057	Cell differentiation protein rcd1	AGI-02	9.592
Cp1854			-	-	-	-	-	-		Ciclev10032474m	scaffold_4	20917509	20920961
Cp1875			-	-	-	-	-	-		Ciclev10014955m	scaffold_2	14148392	14153974
Cp1880		AAvailable marker	-	-	-	-	-	O		Ciclev10016235m	scaffold_2	9351630	9354621	C_unshiu_00067:mRNA_9.1	C_unshiu_00067	71252	74672	Peptide deformylase
Cp1885		AAvailable marker	-	-	-	-	-	O		Ciclev10014471m	scaffold_2	11418331	11422116	C_unshiu_01218:mRNA_4.1	C_unshiu_01218	14084	22447	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Cp1887		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10010991m	scaffold_6	25193617	25201413	C_unshiu_00009:mRNA_34.1	C_unshiu_00009	183041	190334	ATP-dependent chaperone ClpB
Cp1903			-	-	-	-	-	-		Ciclev10021934m	scaffold_3	40231383	40235237
Cp1907			-	-	-	-	-	-		Ciclev10032825m	scaffold_4	17763596	17766370
Cp1908			-	-	-	-	-	-		Ciclev10031956m	scaffold_4	17499130	17500420
Cp1912			-	-	-	-	-	-		Ciclev10020299m	scaffold_3	3241862	3247042
Cp1923		OOthers	-	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297	C_unshiu_00097:mRNA_22.1	C_unshiu_00097	195825	199499	UPF0613 protein PB24D3.06c	AGI-03	22.454
Cp1924			-	-	-	-	-	-		Ciclev10005766m	scaffold_9	3112679	3115796
Cp1925		AAvailable marker	-	-	-	-	O	O		Ciclev10005182m	scaffold_9	3115971	3120271	C_unshiu_00051:mRNA_29.1	C_unshiu_00051	224928	229203	YjeF family domain-containing protein	AGI-03	24.457
Cp1931			-	-	-	-	-	-		Ciclev10008910m	scaffold_1	5353694	5358135
Cp1935			-	-	-	-	-	-		Ciclev10007732m	scaffold_1	5518821	5522727
Cp1938			-	-	-	-	-	-		Ciclev10009324m	scaffold_1	329071	331103
Cp1941			-	-	-	-	-	-		Ciclev10007519m	scaffold_1	25798690	25801889
Cp1945			-	-	-	-	-	-		Ciclev10014186m	scaffold_2	8458209	8466681
Cp1951			-	-	-	-	-	-		Ciclev10004474m	scaffold_9	543444	546746
Cp1958			-	-	-	-	-	-		Ciclev10021818m	scaffold_3	8910454	8913829
Cp1977		OOthers	-	-	-	-	-	-		Ciclev10004968m	scaffold_9	18174858	18179752
Cp1986			-	-	-	-	-	-		Ciclev10002475m	scaffold_5	42329951	42331110
Cp1988			-	-	-	-	-	-		Ciclev10000728m	scaffold_5	31895665	31900513
Cp1989			-	-	-	-	-	-		Ciclev10002271m	scaffold_5	31877030	31880023
Cp1991			-	-	-	-	-	-		Ciclev10013023m	scaffold_6	13082313	13084012
Cp1996		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10002770m	scaffold_5	29463604	29466318	C_unshiu_01370:mRNA_6.1	C_unshiu_01370	46574	49106	Sec-independent protein translocase protein TatA	AGI-09	86.532							RP-09	33.820
Cp1998		AAvailable marker	-	-	-	-	-	O		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein
Cp2013			-	-	-	-	-	-		Ciclev10003676m	scaffold_5	40431405	40438162
Cp2026		AAvailable marker	-	-	-	-	O	O		Ciclev10011534m	scaffold_6	23506491	23509585	C_unshiu_00098:mRNA_44.1	C_unshiu_00098	286004	289150	Tryptophan synthase, beta subunit	AGI-04	43.239
Cp2043			-	-	-	-	-	-		Ciclev10016825m	scaffold_2	13441813	13443080
Cp2046			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Cp2048			-	-	-	-	-	-		Ciclev10024054m	scaffold_3	807021	808331
Cp2052			-	-	-	-	-	-		Ciclev10000825m	scaffold_5	40617691	40619818
Cp2060			-	-	-	-	-	-		Ciclev10005381m	scaffold_9	4503739	4508011
Cp2073			-	-	-	-	-	-		Ciclev10008749m	scaffold_1	26872500	26875269
Cp2079			-	-	-	-	-	-		Ciclev10015139m	scaffold_2	34993442	34996954
Cp2088			-	-	-	-	-	-		Ciclev10021333m	scaffold_3	19244783	19251332
Cp2092			-	-	-	-	-	-		Ciclev10014794m	scaffold_2	23859016	23862998
Cp2112			-	-	-	-	-	-		Ciclev10019054m	scaffold_3	3915455	3918620
Cp2117			-	-	-	-	-	-		Ciclev10030756m	scaffold_4	14510787	14515793
Cp2118			-	-	-	-	-	-		Ciclev10032406m	scaffold_4	14565456	14568265	C_unshiu_00113:mRNA_23.1	C_unshiu_00113	169695	172465	Superoxide dismutase	AGI-07	37.152
Cp2145			-	-	-	-	-	-		Ciclev10021983m	scaffold_3	12413337	12415802
Cp2147			-	-	-	-	-	-		Ciclev10019578m	scaffold_3	12945481	12949086
Cp2151			-	-	-	-	-	-		Ciclev10016218m	scaffold_2	19918574	19923588
Cp2154			-	-	-	-	-	-	SI164	Ciclev10009584m	scaffold_1	20462860	20465557	C_unshiu_00670:mRNA_8.1	C_unshiu_00670	44502	47121	50S ribosomal protein L24, chloroplastic
Cp2158		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10007944m	scaffold_1	22847397	22852110	C_unshiu_00103:mRNA_47.1	C_unshiu_00103	254015	258614	Trigger factor type chaperone family protein	AGI-01	24.422
Cp2176			-	-	-	-	-	-		Ciclev10008323m	scaffold_1	27640636	27648110
Cp2180			-	-	-	-	-	-		Ciclev10008335m	scaffold_1	28385660	28388620
Cp2188		AAvailable marker	-	-	-	-	O	O		Ciclev10028997m	scaffold_8	24666729	24669708	C_unshiu_00021:mRNA_116.1	C_unshiu_00021	778469	782836	Phytol kinase	AGI-08	2.186
Cp2190		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028681m	scaffold_8	24416582	24418982	C_unshiu_00021:mRNA_82.1	C_unshiu_00021	526890	529253	Kinase PfkB	AGI-08	13.780
Cp2193			-	-	-	-	-	-		Ciclev10009415m	scaffold_1	22999424	23001838
Cp2194			-	-	-	-	-	-		Ciclev10028458m	scaffold_8	23768052	23771625
Cp2198			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Cp2208		AAvailable marker	-	-	-	-	-	O		Ciclev10021564m	scaffold_3	7420176	7425027	C_unshiu_00995:mRNA_4.1	C_unshiu_00995	39031	43144	D-ribulose-5-phosphate-3-epimerase isoform 1
Cp2210		AAvailable marker	-	-	-	-	-	O		Ciclev10007886m	scaffold_1	8125279	8130885	C_unshiu_00744:mRNA_3.1	C_unshiu_00744	19836	25320	6-phosphofructokinase isoform 1
Cp2223		OOthers	-	-	-	-	-	-		Ciclev10022371m	scaffold_3	3483334	3485637	C_unshiu_00933:mRNA_9.1	C_unshiu_00933	86958	89273	Protein LATERAL ORGAN BOUNDARIES	AGI-05	25.049
Cp2229		AAvailable marker	-	-	-	-	O	O		Ciclev10022058m	scaffold_3	4117485	4120274	C_unshiu_00318:mRNA_6.1	C_unshiu_00318	44376	47085	Nucleoside diphosphate kinase	AGI-05	27.135
Cp2232		AAvailable marker	-	-	-	-	O	O		Ciclev10002687m	scaffold_5	17809523	17810742	C_unshiu_01815:mRNA_5.1	C_unshiu_01815	28593	29777	Photosystem I reaction center subunit N	AGI-02	22.436
Cp2237		AAvailable marker	-	-	-	-	O	O		Ciclev10028314m	scaffold_8	13190041	13194829	C_unshiu_01736:mRNA_2.1	C_unshiu_01736	18986	23543	Riboflavin biosynthesis protein ribBA, chloroplastic	AGI-08	55.965
Cp2247			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Cp2261			-	-	-	-	-	-		Ciclev10025819m	scaffold_7	1805676	1808859
Cp2262		AAvailable marker	-	-	-	-	-	O		Ciclev10026121m	scaffold_7	1870933	1874304	C_unshiu_00289:mRNA_20.1	C_unshiu_00289	113542	116894	Galactose mutarotase-like superfamily protein
Cp2263		AAvailable marker	-	-	-	-	O	O		Ciclev10026034m	scaffold_7	2586384	2588513	C_unshiu_00025:mRNA_69.1	C_unshiu_00025	530588	532071	Hypothetical protein	AGI-02	70.082
Cp2266			-	-	-	-	-	-
Cte994			-	-	-	-	-	-		Ciclev10000084m	scaffold_5	33791194	33800828
Cte995			-	-	-	-	-	-
Cte996			-	-	-	-	-	-		Ciclev10033219m	scaffold_4	14022708	14024239
Cte997			-	-	-	-	-	-
Cte998			-	-	-	-	-	-		Ciclev10020767m	scaffold_3	16078619	16080683
Cte999			-	-	-	-	-	-		Ciclev10024858m	scaffold_7	11027712	11030551
Edb001			-	-	-	-	-	-		Ciclev10021059m	scaffold_3	46054710	46056408
Edb002			-	-	-	-	-	-		Ciclev10032572m	scaffold_4	20533474	20543182
Edb003		OOthers	-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971	C_unshiu_01260:mRNA_4.1	C_unshiu_01260	30136	32342	Putative WRKY transcription factor 28	AGI-07	41.830
Edb004			-	-	-	-	-	-		Ciclev10012152m	scaffold_6	24874840	24876388
Edb005			-	-	-	-	-	-		Ciclev10021157m	scaffold_3	10140904	10142752
Edb006			-	-	-	-	-	-		Ciclev10002733m	scaffold_5	39974113	39975525
Edp001			-	-	-	-	-	-		Ciclev10026603m	scaffold_7	7147319	7149017
Edp002			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Edp003			-	-	-	-	-	-		Ciclev10020967m	scaffold_3	7197712	7199779
Edp004			-	-	-	-	-	-		Ciclev10013382m	scaffold_6	19046544	19048141
Edp005		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10000211m	scaffold_5	21203994	21212595	C_unshiu_00020:mRNA_80.1	C_unshiu_00020	742433	758888	Retinoblastoma protein 2	AGI-09	105.195							RP-09	23.442
Edw001		AAvailable marker	-	-	-	-	-	O		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof
Edw002			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782	C_unshiu_00024:mRNA_48.2	C_unshiu_00024	335678	337129	LIM transcription factor	AGI-08	77.720
Edw003			-	-	-	-	-	-		Ciclev10019339m	scaffold_3	48063483	48066386
Edw004			-	-	-	-	-	-		Ciclev10021285m	scaffold_3	5253281	5254755
Edw005			-	-	-	-	-	-		Ciclev10002005m	scaffold_5	43068093	43070554
Em0001			-	-	-	-	-	-		Ciclev10016968m	scaffold_2	31927342	31929229	C_unshiu_00027:mRNA_54.1	C_unshiu_00027	345067	346727	50S ribosomal protein L14, chloroplastic	AGI-06	35.643
Em0002			-	-	-	-	-	-
Em0003			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299	C_unshiu_00043:mRNA_48.1	C_unshiu_00043	360776	363775	BEL1-like homeodomain protein 1	AGI-08	56.724
Em0004	Fb1532.em		-	-	-	-	-	-		Ciclev10015815m	scaffold_2	11585699	11587422	C_unshiu_01211:mRNA_9.1	C_unshiu_01211	67756	69149	Transparent testa glabra 1	AGI-02	11.835
Em0005	Fb1892.em		-	-	-	-	-	-						C_unshiu_00168:mRNA_8.1	C_unshiu_00168	76386	80254	BEL1-like homeodomain protein 9	AGI-07
Em0006	Fb1092.em		-	-	-	-	-	-		Ciclev10018447m	scaffold_3	47447469	47458060
Fb0101			-	-	-	-	-	-
Fb0103		OOthers	O	-	-	-	-	-	SI155	Ciclev10008255m	scaffold_1	22758712	22761740	C_unshiu_00103:mRNA_27.1	C_unshiu_00103	160138	163082	GDP-L-galactose phosphorylase	AGI-01	30.703			JtR-01S	6.418
Fb0104		OOthers	O	-	-	-	-	-		Ciclev10016358m	scaffold_2	35758546	35760859	C_unshiu_00337:mRNA_24.1	C_unshiu_00337	135198	136991	Tropinone reductase like	AGI-06	16.857							RP-06.2	16.271
Fb0110			O	-	-	-	-	-	SI246	Ciclev10000900m	scaffold_5	8512380	8517835	C_unshiu_00033:mRNA_4.1	C_unshiu_00033	37755	43368	Bifunctional protein thiED	AGI-09	85.810	KmG-09	23.401	JtR-09S	5.362
Fb0124			-	-	-	-	-	-	SI167,SI212	Ciclev10014164m	scaffold_2	11088808	11095416	C_unshiu_00184:mRNA_31.1	C_unshiu_00184	275231	281575	Phosphoenolpyruvate carboxylase
Fb0130			-	-	-	-	-	-		Ciclev10021969m	scaffold_3	894965	897547
Fb0133			-	-	-	-	-	-						C_unshiu_00195:mRNA_19.1	C_unshiu_00195	140861	146843	Hypothetical protein	AGI-02	39.589	KmG-02	1.175	JtR-02	1.082
Fb0138			-	-	-	-	-	-		Ciclev10000092m	scaffold_5	38499024	38504883	C_unshiu_00183:mRNA_7.1	C_unshiu_00183	86540	94072	Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain	AGI-09	43.862	KmG-09	54.172					SA-09	50.659
Fb0143			-	-	-	-	-	-	SI361	Ciclev10007397m	scaffold_1	25283807	25291472	C_unshiu_00150:mRNA_43.1	C_unshiu_00150	325164	333089	LRR receptor-like serine/threonine-protein kinase ERL1	AGI-01	26.176							RP-01	64.368
Fb0144		AAvailable marker	-	-	-	-	O	O	SI191	Ciclev10019665m	scaffold_3	50861813	50866146	C_unshiu_00206:mRNA_42.1	C_unshiu_00206	283219	294491	Hypothetical protein	AGI-05	107.806
Fb0146			-	-	-	-	-	-		Ciclev10005519m	scaffold_9	1356758	1359310
Fb0149			-	-	-	-	-	-		Ciclev10005274m	scaffold_9	17436969	17441987
Fb0153			-	-	-	-	-	-		Ciclev10002324m	scaffold_5	36347986	36350649	C_unshiu_02857:mRNA_2.1	C_unshiu_02857	11994	14648	Melanoma-associated antigen G1	AGI-09	51.925							RP-09	71.621
Fb0159		AAvailable marker	O	-	-	-	O	O	SI227	Ciclev10028241m	scaffold_8	23456630	23459052	C_unshiu_00375:mRNA_4.1	C_unshiu_00375	27952	30443	O-Glycosyl hydrolases family 17 protein	AGI-08	13.499	KmG-08	9.978					RP-08	2.327
Fb0180			-	-	-	-	-	-	SI209	Ciclev10005370m	scaffold_9	27734482	27736035	C_unshiu_00252:mRNA_1.1	C_unshiu_00252	12109	13626	Hypothetical protein									RP-03	56.919
Fb0191			-	-	-	-	-	-		Ciclev10005974m	scaffold_9	4119936	4121030
Fb0201			-	-	-	-	-	-		Ciclev10000945m	scaffold_5	6040245	6045626
Fb0202			O	-	-	-	-	-		Ciclev10027835m	scaffold_8	23736197	23740543
Fb0204			-	-	-	-	-	-		Ciclev10011983m	scaffold_6	3262368	3266781
Fb0207			-	-	-	-	-	-		Ciclev10006449m	scaffold_9	3771162	3771725	C_unshiu_00254:mRNA_35.1	C_unshiu_00254	237120	239518	Heat shock 22 kDa protein									RP-03	21.444
Fb0208			-	-	-	-	-	-		Ciclev10032366m	scaffold_4	23569924	23573605
Fb0219			-	-	-	-	-	-		Ciclev10031436m	scaffold_4	21153791	21158006	C_unshiu_00010:mRNA_101.1	C_unshiu_00010	718703	722812	F-box only protein 6	AGI-03	46.274
Fb0221			-	-	-	-	-	-		Ciclev10029932m	scaffold_8	8756442	8760308
Fb0223			-	-	-	-	-	-	SI240					C_unshiu_00303:mRNA_13.1	C_unshiu_00303	108935	110191	E3 ubiquitin-protein ligase ATL6									RP-08	15.967
Fb0224			-	-	-	-	-	-		Ciclev10010929m	scaffold_6	541527	549660
Fb0225			-	-	-	-	-	-		Ciclev10008570m	scaffold_1	4873970	4878979	C_unshiu_00039:mRNA_6.1	C_unshiu_00039	54980	59746	Protein arginine N-methyltransferase 1									RP-05	33.168
Fb0227			-	-	-	-	-	-		Ciclev10026002m	scaffold_7	2938059	2940407	C_unshiu_00084:mRNA_42.1	C_unshiu_00084	428180	435326	Phospholipase, patatin family	AGI-02	70.082							RP-02.2	12.696
Fb0231			-	-	-	-	-	-		Ciclev10004999m	scaffold_9	1169260	1172055	C_unshiu_00007:mRNA_2.1	C_unshiu_00007	6589	14596	Two-component response regulator ARR12-like protein									RP-03	1.143
Fb0232			-	-	-	-	-	-
Fb0233			O	-	-	-	-	-	SI025,SI079,SI169	Ciclev10025557m	scaffold_7	6535522	6540965	C_unshiu_00437:mRNA_15.1	C_unshiu_00437	131524	136642	WD-40 repeat-containing protein MSI4	AGI-02	47.382
Fb0234			-	-	-	-	-	-	SI250,SI265	Ciclev10032271m	scaffold_4	16176836	16178421	C_unshiu_00086:mRNA_8.1	C_unshiu_00086	52764	54349	Protodermal factor 1.3, putative	AGI-07	45.424							RP-07	30.993
Fb0237			-	-	-	-	-	-		Ciclev10007227m	scaffold_1	23487200	23497316	C_unshiu_00338:mRNA_20.1	C_unshiu_00338	134033	144369	Hypothetical protein	AGI-01	28.325
Fb0246			-	-	-	-	-	-		Ciclev10029680m	scaffold_8	2403492	2406922	C_unshiu_00363:mRNA_27.1	C_unshiu_00363	170901	174318	Hypothetical protein	AGI-08	80.078
Fb0270			-	-	-	-	-	-		Ciclev10004347m	scaffold_9	23454445	23457114
Fb0275			O	-	-	-	-	-		Ciclev10008562m	scaffold_1	15883118	15887517	C_unshiu_00288:mRNA_9.1	C_unshiu_00288	55910	60461	Malate dehydrogenase	AGI-01	55.687
Fb0277			-	-	-	-	-	-		Ciclev10005726m	scaffold_9	8466200	8470081
Fb0279			-	-	-	-	-	-		Ciclev10026511m	scaffold_7	2590903	2593347
Fb0281			-	-	-	-	-	-		Ciclev10026802m	scaffold_7	13781544	13786811
Fb0293			-	-	-	-	-	-	SI198,SI374					C_unshiu_00152:mRNA_37.1	C_unshiu_00152	259580	269499	Hypothetical protein	AGI-08	73.663
Fb0296			-	-	-	-	-	-		Ciclev10014378m	scaffold_2	22689124	22695586	C_unshiu_01495:mRNA_8.1	C_unshiu_01495	60336	62557	Hypothetical protein									RP-06.1	10.382
Fb0301		AAvailable marker	-	-	-	-	O	O	SI053	Ciclev10014804m	scaffold_2	14143537	14146003	C_unshiu_00466:mRNA_1.1	C_unshiu_00466	13811	16178	4-coumarate:coenzyme A ligase 4	AGI-06	92.727	KmG-06						RP-06.1	16.627
Fb0304			-	-	-	-	-	-		Ciclev10016371m	scaffold_2	479437	484203
Fb0313			-	-	-	-	-	-		Ciclev10002602m	scaffold_5	29803196	29804310	C_unshiu_00570:mRNA_7.1	C_unshiu_00570	69328	70168	Mitochondrial import inner membrane translocase subunit tim23									RP-07	9.871
Fb0321		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10027873m	scaffold_8	6834487	6837762	C_unshiu_00918:mRNA_1.1	C_unshiu_00918	5010	7626	Arginine decarboxylase 1	AGI-08	56.405			JtR-08	25.280
Fb0322			O	-	-	-	-	-		Ciclev10030532m	scaffold_4	3249710	3254808	C_unshiu_00342:mRNA_35.1	C_unshiu_00342	217525	222590	Splicing factor 3B subunit 3	AGI-07	14.580			JtR-07	64.384			RP-07	47.636
Fb0326			O	-	-	-	-	-		Ciclev10002506m	scaffold_5	43051579	43053394	C_unshiu_00370:mRNA_38.1	C_unshiu_00370	207050	209216	Cell division control protein 2	AGI-09	8.959							RP-09	78.225
Fb0329			-	-	-	-	-	-		Ciclev10004180m	scaffold_9	29237838	29242883	C_unshiu_00606:mRNA_2.1	C_unshiu_00606	13693	18703	Methyltransferase MT-A70 family protein isoform 1	AGI-03	60.686
Fb0331			-	-	-	-	-	-		Ciclev10004211m	scaffold_9	1799556	1809946
Fb0343		AAvailable marker	O	-	-	-	-	O		Ciclev10033061m	scaffold_4	25059045	25061910	C_unshiu_00001:mRNA_322.1	C_unshiu_00001	2042062	2044301	U6 snRNA-associated Sm-like protein LSm7			KmG-07
Fb0346			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Fb0357			O	-	-	-	-	-	SI384	Ciclev10001633m	scaffold_5	40550222	40554434	C_unshiu_00889:mRNA_6.1	C_unshiu_00889	44175	51825	Hypothetical protein	AGI-09	39.104
Fb0364		AAvailable marker	-	-	-	-	O	O	SI373	Ciclev10022215m	scaffold_3	13810497	13813004	C_unshiu_00542:mRNA_3.1	C_unshiu_00542	15940	18433	Nascent polypeptide-associated complex subunit alpha-like protein	AGI-05	41.306	KmG-05S	55.482	JtR-05	39.609			RP-05	56.834
Fb0365			O	-	-	-	-	-	SI036,SI320	Ciclev10026391m	scaffold_7	20872462	20874659	C_unshiu_00098:mRNA_41.1	C_unshiu_00098	264947	272086	Hypothetical protein	AGI-02	31.596	KmG-02		JtR-02	-4.953
Fb0369			-	-	-	-	-	-		Ciclev10019885m	scaffold_3	7792188	7795727	C_unshiu_01545:mRNA_3.1	C_unshiu_01545	37559	39424	AT-rich interactive domain-containing protein 2	AGI-05	44.172	KmG-05S	30.809	JtR-05	16.246
Fb0372			-	-	-	-	-	-	SI343,SI052	Ciclev10002666m	scaffold_5	35123213	35124730	C_unshiu_00042:mRNA_34.1	C_unshiu_00042	237022	238272	Ubiquitin-fold modifier-conjugating enzyme 1	AGI-09	59.896
Fb0373			O	-	-	-	-	-		Ciclev10000030m	scaffold_5	6404463	6435349	C_unshiu_00034:mRNA_15.1	C_unshiu_00034	150102	178260	ATP-dependent RNA helicase DHX29	AGI-09	85.810	KmG-09	22.909	JtR-09S	7.995			RP-09	0.104
Fb0374			-	-	-	-	-	-		Ciclev10002014m	scaffold_5	6777322	6781162
Fb0389			-	-	-	-	-	-		Ciclev10014121m	scaffold_2	25179668	25188103	C_unshiu_00087:mRNA_31.1	C_unshiu_00087	209767	218135	Putative pesticidal crystal cry8Ba-like	AGI-08	56.850
Fb0423			O	-	-	-	-	-		Ciclev10020919m	scaffold_3	867235	871452
Fb0478			-	-	-	-	-	-		Ciclev10008010m	scaffold_1	14592248	14596429	C_unshiu_00071:mRNA_18.1	C_unshiu_00071	196512	200666	Beta-glucosidase 44	AGI-01	61.025
Fb0708			-	-	-	-	-	-		Ciclev10005455m	scaffold_9	31237089	31243737	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	74.195			JtR-032	19.857
Fb0722			-	-	-	-	-	-		Ciclev10008390m	scaffold_1	16098039	16100795
Fb0827			O	-	-	-	-	-	SI215,SI301	Ciclev10004432m	scaffold_9	2353442	2357780	C_unshiu_00394:mRNA_9.1	C_unshiu_00394	41719	45690	Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase	AGI-03	19.017	KmG-031	16.544	JtR-034
Fb0995		OOthers	O	-	-	-	-	-	SI026	Ciclev10024677m	scaffold_7	1180019	1202408	C_unshiu_00544:mRNA_10.1	C_unshiu_00544	97318	121662	FAT domain-containing protein	AGI-02	74.555	KmG-02	82.954	JtR-02	10.215
Fb1121	Fb1121.lg		-	-	-	-	-	-		Ciclev10014991m	scaffold_2	22635764	22640239
Fb1134.2			-	-	-	-	-	-		Ciclev10030474m	scaffold_4	9547707	9559498	C_unshiu_00140:mRNA_14.1	C_unshiu_00140	164689	176715	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5	AGI-07	38.546
Fb1170			-	-	-	-	-	-		Ciclev10014845m	scaffold_2	23829862	23832918
Fb1227			-	-	-	-	-	-		Ciclev10004375m	scaffold_9	3367718	3376062	C_unshiu_00051:mRNA_60.1	C_unshiu_00051	463042	471084	Chloride channel protein	AGI-03	19.631
Fb1430	Fb1430.lg		O	-	-	-	-	-		Ciclev10005994m	scaffold_9	1879675	1880523	C_unshiu_00102:mRNA_3.1	C_unshiu_00102	16507	17334	60S ribosome subunit biogenesis protein NIP7 homolog	AGI-03
Fb1505			-	-	-	-	-	-
Fb1567			-	-	-	-	-	-		Ciclev10022690m	scaffold_3	50637673	50640392	No					AGI-05	103.212
Fb1611			-	-	-	-	-	-	SI071	Ciclev10014570m	scaffold_2	27030188	27034752	No
Fb1678			O	-	-	-	-	-		Ciclev10022198m	scaffold_3	6000266	6002833	C_unshiu_00997:mRNA_6.2	C_unshiu_00997	44420	46811	Putative axial regulator YABBY 2	AGI-05	45.297
Fb1685			-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515
Fb1751			-	-	-	-	-	-	SI264	Ciclev10025011m	scaffold_7	7977527	7984425	C_unshiu_00121:mRNA_40.1	C_unshiu_00121	250743	257054	Protein STRUBBELIG-RECEPTOR FAMILY 8
Fb1784			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936	C_unshiu_02466:mRNA_2.1	C_unshiu_02466	2597	4055	Class I chitinase									RP-05	52.311
Fb1916			-	-	-	-	-	-	SI336	Ciclev10016275m	scaffold_2	12043969	12046230	C_unshiu_00026:mRNA_12.1	C_unshiu_00026	110679	112686	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4									RP-06.1	24.027
Fb2130			-	-	-	-	-	-	SI069,SI117	Ciclev10030030m	scaffold_8	24341129	24344795	C_unshiu_00021:mRNA_68.1	C_unshiu_00021	452003	461315	Hypothetical protein	AGI-08	11.809	KmG-08	11.813
Fb2156	Fb2156.lg		O	-	-	-	-	-		Ciclev10000537m	scaffold_5	39992234	39996269	C_unshiu_00096:mRNA_31.1	C_unshiu_00096	198494	202358	Poly(A) binding protein 6, putative isoform 1	AGI-09	41.254
Fb2159			-	-	-	-	-	-	SI205,SI300	Ciclev10021136m	scaffold_3	39606431	39608387	C_unshiu_00037:mRNA_76.1	C_unshiu_00037	551437	553057	Pirin family protein	AGI-05	49.856	KmG-05S	68.781	JtR-05	41.770			SA-09
Gmom01			-	-	-	-	-	-		Ciclev10000531m	scaffold_5	33273053	33276013
Gmom02			-	-	-	-	-	-		Ciclev10015097m	scaffold_2	4367068	4371625
Gmom03			-	-	-	-	-	-		Ciclev10019436m	scaffold_3	1864604	1871328	C_unshiu_01325:mRNA_3.1	C_unshiu_01325	7876	14474	Bromo-adjacent-like (BAH) domain protein	AGI-05	7.888
Gmom04			-	-	-	-	-	-		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY	AGI-05	73.504
Gmom05			-	-	-	-	-	-		Ciclev10024623m	scaffold_3	33722934	33727855
Gmom06			-	-	-	-	-	-		Ciclev10012088m	scaffold_6	2067586	2073007
Gmom07			-	-	-	-	-	-		Ciclev10021492m	scaffold_3	7248627	7253007
Gmom08			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Gmom09			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Gmom11			-	-	-	-	-	-		Ciclev10019184m	scaffold_3	680835	684433
Gmom12			-	-	-	-	-	-		Ciclev10009761m	scaffold_1	25604509	25605857
Gmom13			-	-	-	-	-	-		Ciclev10005787m	scaffold_9	13223034	13225922	C_unshiu_00620:mRNA_11.2	C_unshiu_00620	118042	120892	Ethylene-responsive transcription factor ERF114	AGI-08	56.724
Gmom15			-	-	-	-	-	-
Gmom16			-	-	-	-	-	-		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY	AGI-05	73.007
Gmom17			-	-	-	-	-	-		Ciclev10019228m	scaffold_3	47476188	47479361
Gmom19			-	-	-	-	-	-		Ciclev10011554m	scaffold_6	21450811	21454133	C_unshiu_00037:mRNA_27.1	C_unshiu_00037	166873	170276	Protein CCA1	AGI-04	54.804
Gmom22			-	-	-	-	-	-		Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1	AGI-07	78.469	KmG-07	2.659
Gmom23			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1			KmG-02	20.942
Gmom24			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1	AGI-02	19.971
Gmom26			-	-	-	-	-	-		Ciclev10005911m	scaffold_9	713868	716708	C_unshiu_00007:mRNA_76.1	C_unshiu_00007	473625	476336	Prefoldin subunit 3	AGI-03	10.918
Gmom27			-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971
Gmom28			-	-	-	-	-	-		Ciclev10032943m	scaffold_4	12596113	12597155
Gmom29			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761	C_unshiu_00578:mRNA_7.1	C_unshiu_00578	77446	80730	Putative WRKY transcription factor 33	AGI-02	22.436
Gmom31			-	-	-	-	-	-		Ciclev10008052m	scaffold_1	27783419	27789937
Gn0001			-	-	-	-	-	-		Ciclev10012905m	scaffold_6	12840408	12842940
Gn0002			-	-	-	-	-	-		Ciclev10032697m	scaffold_4	3335945	3338632	C_unshiu_00465:mRNA_12.1	C_unshiu_00465	149021	153095	Hypothetical protein	AGI-07	90.233			JtR-07	64.361
Gn0003			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Gn0004			-	-	-	-	-	-		Ciclev10026028m	scaffold_7	6011523	6014015	C_unshiu_00696:mRNA_14.1	C_unshiu_00696	122646	125456	Flavonol synthase	AGI-02	49.699	KmG-02	38.471	JtR-02	15.126
Gn0005		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515	C_unshiu_00337:mRNA_13.1	C_unshiu_00337	68883	71725	Fibrillin	AGI-06	16.857	KmG-06	63.840			NAT-06S	59.976
Gn0005.2			-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515
Gn0006			-	-	-	-	-	-
Gn0007.2			-	-	-	-	-	-		Ciclev10007114m	scaffold_9	17778571	17785482
Gn0008		OOthers	-	-	-	-	-	-	SI176	Ciclev10005632m	scaffold_9	17789634	17793258	C_unshiu_00098:mRNA_1.1	C_unshiu_00098	5120	17442	Phytoene desaturase	AGI-03	46.274
Gn0009		AAvailable marker	-	-	-	-	O	O											AGI-04	57.369	KmG-04	27.843
Gn0010			-	-	-	-	-	-
Gn0011			-	-	-	-	-	-		Ciclev10007488m	scaffold_1	24814539	24819264	C_unshiu_00341:mRNA_12.1	C_unshiu_00341	85182	89905	Sucrose synthase			KmG-01	21.459
Gn0012			-	-	-	-	-	-		Ciclev10018889m	scaffold_3	46011238	46017249	C_unshiu_00139:mRNA_16.1	C_unshiu_00139	135708	141900	Sucrose synthase			KmG-05S	78.527
Gn0014.2		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181	C_unshiu_00056:mRNA_20.1	C_unshiu_00056	144107	146527	Beta-carotene hydroxylase 1
Gn0016			-	-	-	-	-	-													KmG-01	18.088
Gn0017			-	-	-	-	-	-		Ciclev10007311m	scaffold_1	25880824	25887976	C_unshiu_00005:mRNA_103.1	C_unshiu_00005	841899	847089	Sucrose phosphate synthase	AGI-01	30.293	KmG-01	17.862
Gn0018			-	-	-	-	-	-		Ciclev10030969m	scaffold_4	5053540	5061039	C_unshiu_00616:mRNA_15.1	C_unshiu_00616	99349	106841	V-type H+-transporting ATPase subunit A	AGI-08	84.345	KmG-02	16.986
Gn0019			-	-	-	-	-	-		Ciclev10002883m	scaffold_5	26949951	26952841	C_unshiu_02041:mRNA_4.1	C_unshiu_02041	18003	20672	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1			KmG-09	17.972	JtR-09S	22.316
Gn0021		AAvailable marker	-	-	-	-	O	O		Ciclev10000597m	scaffold_5	39630111	39635609	C_unshiu_01033:mRNA_10.1	C_unshiu_01033	47799	53166	Somatic embryogenesis receptor kinase 1	AGI-09	42.621	KmG-09	68.220	JtR-09S	97.453	NAT-09	83.381
Gn0027		HDisagree on Clementine haploid genotype	-	-	-	-	-	-											AGI-05	43.412
Gn0028		DDominant marker	-	-	-	-	-	-															JtR-01S	10.669
Gn0029		AAvailable marker	-	-	-	-	-	O
Gn0030		MDisagree by Marco analysis	-	-	-	-	-	-											AGI-08	37.823	KmG-08	37.758			NAT-082	30.069
Gn0031		AtAvailable marker	-	-	-	-	O	O											AGI-08	37.706
Gn0033		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605	C_unshiu_00363:mRNA_2.1	C_unshiu_00363	14663	16198	Limonoid UDP-glucosyltransferase-like protein	AGI-08	73.527	KmG-08	86.664			NAT-082	86.620
Gn0033.2			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Gn0033.3			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Gn0035			-	-	-	-	-	-		Ciclev10011766m	scaffold_6	18517611	18519337
Gn0037			-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog	AGI-08	55.656
Gn0039			-	-	-	-	-	-
Gn0040		AAvailable marker	-	-	-	-	O	O	SI015,SI337	Ciclev10033176m	scaffold_4	16232756	16233365	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	43.542	KmG-07	56.094	JtR-07	48.672
Gn0041		AAvailable marker	-	-	-	-	-	O						C_unshiu_00123:mRNA_16.1	C_unshiu_00123	116817	119061	Homeobox-leucine zipper protein HAT5			KmG-05S	9.772	JtR-05	28.396
Gn0042			-	-	-	-	-	-		Ciclev10009742m	scaffold_1	25370176	25371445	C_unshiu_00498:mRNA_21.1	C_unshiu_00498	140388	142383	Deficiens					JtR-08	6.490
Gn0043		MDisagree by Marco analysis	-	-	-	O	-	-	SI323	Ciclev10027790m	scaffold_8	21953129	21960709	C_unshiu_02574:mRNA_1.1	C_unshiu_02574		2470	Class III homeodomain leucine zipper protein	AGI-08	30.721	KmG-08	27.458
Gn0044			-	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Gn0045			-	-	-	-	-	-		Ciclev10016917m	scaffold_2	32720609	32721917
Gn0046			-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218	C_unshiu_00201:mRNA_11.2	C_unshiu_00201	136005	138785	Aspartic proteinase nepenthesin-1	AGI-07	64.812			JtR-08	23.181
Gn0047			-	-	-	-	-	-		Ciclev10011938m	scaffold_6	18741181	18744166	C_unshiu_00139:mRNA_23.1	C_unshiu_00139	204645	207518	Squamosa promoter-binding-like protein 9			KmG-04	48.092
Gn0048		AAvailable marker	-	O	-	-	O	O	SI289	Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7	AGI-07	74.225	KmG-07	7.964	JtR-07	4.200
Gn0049			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311	C_unshiu_00024:mRNA_95.1	C_unshiu_00024	699386	701126	DUF1005 family protein	AGI-08	77.688			JtR-08	17.757
Gn0050			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009	C_unshiu_00014:mRNA_87.1	C_unshiu_00014	637698	638678	CRT binding factor 3	AGI-05	29.035	KmG-05S	21.884	JtR-05	19.008
Gn0051		AAvailable marker	-	-	-	-	O	O	SI306,SI366	Ciclev10011780m	scaffold_6	24082263	24084635	C_unshiu_00133:mRNA_13.1	C_unshiu_00133	63870	65165	Protein UNUSUAL FLORAL ORGANS	AGI-04	39.510	KmG-04	0.447
Gn0052			-	-	-	-	-	-		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein			KmG-032	15.450	JtR-031	12.830
Gn0054			-	-	-	-	-	-											AGI-08	95.075	KmG-04	64.581
Gn0055.2			-	-	-	-	-	-
Gn0056			-	-	-	-	-	-		Ciclev10020582m	scaffold_3	28382218	28386683	C_unshiu_00585:mRNA_5.1	C_unshiu_00585	31636	34824	60S ribosomal protein L5	AGI-05	39.424
Gn0058			-	-	-	-	-	-		Ciclev10029531m	scaffold_8	11297754	11299510	C_unshiu_00424:mRNA_23.1	C_unshiu_00424	213541	217268	Hypothetical protein	AGI-08	59.107
Gn0060.2		OOthers	O	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508
Gn0061.2		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10031014m	scaffold_4	25500601	25505812	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-06	20.248
Gn0062.2		OOthers	-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Gn0063		OOthers	O	-	-	-	-	-		Ciclev10019925m	scaffold_3	40937725	40942854	C_unshiu_00735:mRNA_14.1	C_unshiu_00735	99621	103733	Violaxanthin de-epoxidase	AGI-08	60.140	KmG-07	31.750
Gn0064		ULess informative for main cultivars	O	-	-	-	-	-	SI144,SI380	Ciclev10019364m	scaffold_3	29351854	29354190	C_unshiu_00549:mRNA_6.1	C_unshiu_00549	39588	41921	9-cis-epoxycarotenoid dioxygenase 1	AGI-05	42.191							RP-05	51.531
Gn0065		Bno homozygous cultivar with minor allele	O	-	-	-	-	-						C_unshiu_00021:mRNA_4.1	C_unshiu_00021	34178	38574	Phytoene desaturase	AGI-09	79.316
Gn0066.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475	C_unshiu_00043:mRNA_12.1	C_unshiu_00043	90212	94791	Carotenoid isomerase	AGI-04
Gn0067		OOthers	O	-	-	-	-	-	SI204,SI349	Ciclev10004730m	scaffold_9	22728310	22730086	C_unshiu_00295:mRNA_17.1	C_unshiu_00295	207257	208985	Lycopene beta-cyclase	AGI-03	46.274
Gn0068			-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic	AGI-02	68.446							RP-02.2	9.814
Gn0068.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic
Gn0068.3	Gn0068.y	OOthers	-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894
Gn0069		ULess informative for main cultivars	O	-	-	-	-	-	SI086,SI375	Ciclev10008410m	scaffold_1	10946316	10949617	C_unshiu_00201:mRNA_19.1	C_unshiu_00201	212151	227232	Lycopene epsilon cyclase	AGI-01	57.863
Gn0070			-	-	-	-	-	-		Ciclev10031014m	scaffold_4	25500601	25505812
Gn0071		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI363	Ciclev10031039m	scaffold_4	25506446	25511133	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-07	86.113
Gn0072.2			-	-	-	-	-	-		Ciclev10020671m	scaffold_3	35321971	35324490
Gn0072.3			-	-	-	-	-	-		Ciclev10020671m	scaffold_3	35321971	35324490
Gn0073		AAvailable marker	O	O	-	-	O	O		Ciclev10014770m	scaffold_2	35895662	35898841	C_unshiu_00077:mRNA_4.1	C_unshiu_00077	30410	32987	Tonoplast dicarboxylate transporter	AGI-06	12.402
Gn0077			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Gn0078		MDisagree by Marco analysis	-	-	-	-	-	-															JtR-033
Gn0079			-	-	-	-	-	-		Ciclev10004459m	scaffold_9	28065538	28070492
Gn0080			-	-	-	-	-	-
Gn0081			-	-	-	-	-	-
Gn0082		AAvailable marker	-	-	-	-	-	O
Gn0083			-	-	-	-	-	-		Ciclev10016280m	scaffold_2	23891814	23893095
Gn0084		DDominant marker	-	-	-	-	-	-		Ciclev10010857m	scaffold_1	28321342	28323314
Gn0085			-	-	-	-	-	-		Ciclev10014816m	scaffold_2	9457192	9463218
Gn0086.9		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029066m	scaffold_8	6317205	6322458
Gn0087			-	-	-	-	-	-
Gn0088			-	-	-	-	-	-
Gn0089			-	-	-	-	-	-
Gn0090			-	-	-	-	-	-
Gn0091			-	-	-	-	-	-
Gn0092			-	-	-	-	-	-
Gn0093			-	-	-	-	-	-
Gn0094			-	-	-	-	-	-
Gn0095			-	-	-	-	-	-
Gn0096			-	-	-	-	-	-
Gn0097			-	-	-	-	-	-		Ciclev10005133m	scaffold_9	10246239	10248409	C_unshiu_00372:mRNA_8.1	C_unshiu_00372	77039	79209	Naringenin-chalcone synthase	AGI-02
Gn0100			-	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508	C_unshiu_00814:mRNA_2.1	C_unshiu_00814	13987	15768	Putative lycopene beta cyclase	AGI-08	44.669
Gn0101			-	-	-	-	-	-		Ciclev10025706m	scaffold_7	662802	667420	C_unshiu_00353:mRNA_30.1	C_unshiu_00353	203269	207136	Protein MID1-COMPLEMENTING ACTIVITY 1	AGI-02	77.881
Gn0105	Gn0105.4		-	-	-	-	-	-
If0001			-	-	-	-	-	-		Ciclev10015414m	scaffold_2	6319446	6320851
If0002		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10016861m	scaffold_2	35546692	35549207	C_unshiu_01497:mRNA_3.1	C_unshiu_01497	10215	14601	YggS family pyridoxal phosphate enzyme	AGI-06	19.002	KmG-06	62.901
If0003		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI130	Ciclev10015433m	scaffold_2	35470078	35472862	C_unshiu_00048:mRNA_13.1	C_unshiu_00048	64652	67377	Aminomethyltransferase	AGI-06	18.136			JtR-06S	67.371
If0004			-	-	-	-	-	-		Ciclev10001562m	scaffold_5	41084275	41089200
If0005		OOthers	-	-	-	-	-	-		Ciclev10032438m	scaffold_4	20629463	20633356	C_unshiu_00015:mRNA_81.1	C_unshiu_00015	667011	671011	Glucosamine/galactosamine-6-phosphate isomerase family protein					JtR-07	25.458	NAT-07	15.764
If0006			-	-	-	-	-	-		Ciclev10002349m	scaffold_5	42489684	42491501
If0007			-	-	-	-	-	-
If0008		AAvailable marker	-	-	-	-	-	O		Ciclev10009315m	scaffold_1	26576059	26578193	No							KmG-01	15.635	JtR-01S	57.666
If0009			-	-	-	-	-	-		Ciclev10017109m	scaffold_2	30599335	30602528
If0010		AAvailable marker	O	-	-	-	O	-		Ciclev10026308m	scaffold_7	1264965	1266960	C_unshiu_00218:mRNA_11.1	C_unshiu_00218	63403	65018	60S ribosomal protein L8	AGI-02	73.759	KmG-02	76.687	JtR-02	10.849	NAT-02S	71.041
If0011		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10013189m	scaffold_6	20522569	20523527	C_unshiu_00331:mRNA_8.1	C_unshiu_00331	122906	127189	PLASMODESMATA CALLOSE-BINDING PROTEIN 3
If0012			-	-	-	-	-	-		Ciclev10027933m	scaffold_8	23574080	23579813
If0201			-	-	-	-	-	-		Ciclev10005030m	scaffold_9	28608335	28612490
If0202			-	-	-	-	-	-		Ciclev10016037m	scaffold_2	3777397	3781539
If0203		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10022993m	scaffold_3	42229224	42231230	C_unshiu_00322:mRNA_21.1	C_unshiu_00322	121122	123131	Small ubiquitin-related modifier	AGI-05	51.293	KmG-05S	67.257	JtR-05	43.446
If0204			-	-	-	-	-	-		Ciclev10031206m	scaffold_4	23431992	23438280
If0205		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI256					C_unshiu_00046:mRNA_66.1	C_unshiu_00046	551244	556744	Hypothetical protein	AGI-04	86.280	KmG-04	52.960
If0206		DDominant marker	-	-	-	-	-	-	SI208	Ciclev10012955m	scaffold_6	15192652	15194091	C_unshiu_00034:mRNA_78.1	C_unshiu_00034	662958	664402	Universal stress protein A-like protein
If0207		HDisagree on Clementine haploid genotype	-	-	-	-	-	-						C_unshiu_01172:mRNA_2.1	C_unshiu_01172	28413	28712	Hypothetical protein	AGI-07	45.716
If0208		AAvailable marker	-	O	-	O	O	O	SI083,SI317	Ciclev10001680m	scaffold_5	40628244	40630241	C_unshiu_00234:mRNA_9.1	C_unshiu_00234	94988	99176	TRNA-processing ribonuclease BN	AGI-09	39.296	KmG-09	72.036	JtR-09S	115.150	NAT-09	89.867
If0209		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						No
If0210			-	-	-	-	-	-	SI042	Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme	AGI-02	73.759
If0211		AAvailable marker	-	-	-	-	O	O	SI226					No					AGI-09	47.410	KmG-09	60.856
If0212			-	-	-	-	-	-
If0213			-	-	-	-	-	-
If0214			-	-	-	-	-	-		Ciclev10009906m	scaffold_1	21464732	21466099
If0215			-	-	-	-	-	-
If0216		OOthers	O	-	-	-	-	-	SI174	Ciclev10015257m	scaffold_2	12876952	12881843	C_unshiu_01838:mRNA_2.1	C_unshiu_01838	23594	31186	Hypothetical protein	AGI-09	74.076	KmG-01	26.420	JtR-01S	66.382			RP-09	29.224
If0217			-	-	-	-	-	-
If0218			-	-	-	-	-	-		Ciclev10022441m	scaffold_3	449407	451690
If0219		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_00318:mRNA_17.1	C_unshiu_00318	110550	117056	Esterase					JtR-05	13.922	NAT-05	28.283
If0220		AAvailable marker	-	-	-	-	-	O		Ciclev10001084m	scaffold_5	39480647	39484776	C_unshiu_00457:mRNA_15.1	C_unshiu_00457	99488	99913	Hypothetical protein
If0221			-	-	-	-	-	-
If0222			-	-	-	-	-	-		Ciclev10021958m	scaffold_3	6541868	6545524
If0223		AAvailable marker	-	-	-	-	O	O						No					AGI-02	76.168	KmG-07	43.554	JtR-02	13.208	NAT-02S	71.420
Ks9001			-	-	-	-	-	-		Ciclev10008207m	scaffold_1	24548109	24552107	C_unshiu_00047:mRNA_72.1	C_unshiu_00047	475125	488565	Inter-alpha-trypsin inhibitor heavy chain-related isoform 1	AGI-01	27.192			JtR-01S	61.287
Ks9002			-	-	-	-	-	-		Ciclev10019722m	scaffold_3	41636616	41641629
Ks9003		AAvailable marker	-	-	-	-	-	O		Ciclev10014733m	scaffold_2	8436110	8440408	C_unshiu_00494:mRNA_1.1	C_unshiu_00494	7014	11146	Ascorbate oxidase			KmG-09	19.560	JtR-09S	5.836
Ks9004			-	-	-	-	-	-		Ciclev10016351m	scaffold_2	8406645	8407971
Ks9005		AAvailable marker	O	-	-	-	O	O	SI342	Ciclev10015338m	scaffold_2	290799	294122	C_unshiu_00109:mRNA_36.1	C_unshiu_00109	219070	222359	TRNA-splicing ligase RtcB	AGI-02	13.646	KmG-02	23.647					RP-02	16.986
Ks9006			-	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014
Ks9007			-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382
Ks9008			-	-	-	-	-	-		Ciclev10002532m	scaffold_5	30631872	30632814
Ks9009			-	-	-	-	-	-
Ks9010		AAvailable marker	-	-	-	-	O	O		Ciclev10007188m	scaffold_9	29460866	29463385	C_unshiu_00056:mRNA_15.1	C_unshiu_00056	116304	118823	Receptor-like protein kinase HERK 1	AGI-04	62.499	KmG-04	39.019
Ks9011		AAvailable marker	-	-	-	-	-	O		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin					JtR-032
Ks9012			-	-	-	-	-	-		Ciclev10001908m	scaffold_5	40317721	40321609
Ks9013			-	-	-	-	-	-		Ciclev10032489m	scaffold_4	18947498	18950949	C_unshiu_00039:mRNA_34.1	C_unshiu_00039	255025	269908	Hypothetical protein			KmG-07	45.284	JtR-07	39.119
Ks9014			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
L9S501			-	-	-	-	-	-		Ciclev10000193m	scaffold_5	1411432	1414337
L9S502			-	-	-	-	-	-		Ciclev10003166m	scaffold_5	1875696	1877290
L9S503			-	-	-	-	-	-		Ciclev10003049m	scaffold_5	3004724	3008333
L9S504			-	-	-	-	-	-		Ciclev10002670m	scaffold_5	4526709	4528008
L9S505			-	-	-	-	-	-		Ciclev10003989m	scaffold_5	5815715	5818239
L9S506			-	-	-	-	-	-		Ciclev10001154m	scaffold_5	6749024	6753178
L9S507			-	-	-	-	-	-		Ciclev10001661m	scaffold_5	7157125	7159270
L9S508			-	-	-	-	-	-		Ciclev10000814m	scaffold_5	8181011	8183247
L9S509			-	-	-	-	-	-		Ciclev10000659m	scaffold_5	9197774	9204364
L9S510			-	-	-	-	-	-		Ciclev10000342m	scaffold_5	9950356	9958602
L9S511			-	-	-	-	-	-		Ciclev10001293m	scaffold_5	9983419	9985631
L9S512			-	-	-	-	-	-		Ciclev10002503m	scaffold_5	11129409	11130029
L9S513			-	-	-	-	-	-		Ciclev10003624m	scaffold_5	11355972	11358542
L9S514			-	-	-	-	-	-		Ciclev10003124m	scaffold_5	11677155	11678430
L9S515			-	-	-	-	-	-		Ciclev10000571m	scaffold_5	12159643	12164071
L9S516			-	-	-	-	-	-		Ciclev10003378m	scaffold_5	12722282	12722998
L9S517			-	-	-	-	-	-		Ciclev10002443m	scaffold_5	13064040	13065284
L9S518			-	-	-	-	-	-		Ciclev10000225m	scaffold_5	14344821	14350359
L9S519			-	-	-	-	-	-		Ciclev10002183m	scaffold_5	15208666	15210042
L9S520			-	-	-	-	-	-		Ciclev10000776m	scaffold_5	15735614	15740485
L9S521			-	-	-	-	-	-		Ciclev10002914m	scaffold_5	16049006	16051176
L9S522			-	-	-	-	-	-		Ciclev10002980m	scaffold_5	17394017	17394732
L9S523			-	-	-	-	-	-		Ciclev10000858m	scaffold_5	18221785	18227885
L9S524			-	-	-	-	-	-		Ciclev10000577m	scaffold_5	19103573	19108067
L9S525			-	-	-	-	-	-		Ciclev10002050m	scaffold_5	19780298	19783698
L9S531			-	-	-	-	-	-		Ciclev10003634m	scaffold_5	4909247	4911803
L9S532			-	-	-	-	-	-		Ciclev10003840m	scaffold_5	6781009	6783205
L9S533			-	-	-	-	-	-		Ciclev10000860m	scaffold_5	7063961	7066280
L9S534			-	-	-	-	-	-		Ciclev10003417m	scaffold_5	8058499	8060536
L9S535			-	-	-	-	-	-		Ciclev10002141m	scaffold_5	8300865	8301824
L9S536			-	-	-	-	-	-		Ciclev10000273m	scaffold_5	8573281	8583459
L9S537			-	-	-	-	-	-		Ciclev10001547m	scaffold_5	9471785	9476073
L9S538			-	-	-	-	-	-		Ciclev10003348m	scaffold_5	9591276	9592610
L9S539			-	-	-	-	-	-		Ciclev10002788m	scaffold_5	9976757	9977512
L9S540			-	-	-	-	-	-		Ciclev10000484m	scaffold_5	11336903	11346938
Lg2001			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562
Lg2002			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562	C_unshiu_00152:mRNA_44.1	C_unshiu_00152	294607	297615	Phosphoglycerate dehydrogenase	AGI-08	69.974
Lg2003			-	-	-	-	-	-		Ciclev10005717m	scaffold_9	2603134	2605405
Lg2004			-	-	-	-	-	-		Ciclev10028785m	scaffold_8	2599717	2602090	C_unshiu_00152:mRNA_53.1	C_unshiu_00152	347645	349890	Cinnamyl alcohol dehydrogenase	AGI-08	76.045
Lg2005			-	-	-	-	-	-		Ciclev10002751m	scaffold_5	42187714	42189727	C_unshiu_00192:mRNA_45.1	C_unshiu_00192	319592	321612	SCF ubiquitin ligase, SKP1 component	AGI-09	34.172
Lg2006	Fb2150		-	-	-	-	-	-		Ciclev10000537m	scaffold_5	39992234	39996269
Lp0001			-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081
Lp0002			-	-	-	-	-	-		Ciclev10026427m	scaffold_7	5575623	5577458
Lp0003			-	-	-	-	-	-
Lp0004		OOthers	-	-	-	-	-	-		Ciclev10026144m	scaffold_7	15376818	15378771	C_unshiu_00703:mRNA_1.1	C_unshiu_00703	2793	4693	C6HC-type zinc finger RING/U-box protein	AGI-02	20.292	KmG-02	15.368					RP-02	11.119
Lp0005.3			-	-	-	-	-	-		Ciclev10001133m	scaffold_5	36894365	36899326
Lp0006			-	-	-	-	-	-		Ciclev10002349m	scaffold_5	42489684	42491501
Lp0007			-	-	-	-	-	-		Ciclev10015385m	scaffold_2	4021167	4024377
Lp0008			-	-	-	-	-	-		Ciclev10004626m	scaffold_9	29874798	29879735
Lp0009		DDominant marker	-	-	-	-	-	-		Ciclev10005585m	scaffold_9	30171791	30177202	C_unshiu_00134:mRNA_8.1	C_unshiu_00134	71410	76705	Phosphatase 2C 76 isoform 1			KmG-05S	36.573	JtR-05	12.427
Lp0010			-	-	-	-	-	-
Lp0011			-	-	-	-	-	-		Ciclev10019815m	scaffold_3	47605942	47609861
Lp0012			-	-	-	-	-	-		Ciclev10032909m	scaffold_4	21351776	21355223
Lp0013			-	-	-	-	-	-		Ciclev10004852m	scaffold_9	16971264	16973312	C_unshiu_00122:mRNA_43.1	C_unshiu_00122	389000	391027	Adenosylhomocysteinase			KmG-09	15.606
Lp0014			-	-	-	-	-	-		Ciclev10001245m	scaffold_5	33825679	33829181
Lp0015			-	-	-	-	-	-		Ciclev10000566m	scaffold_5	42555317	42559854
Lp0016			-	-	-	-	-	-		Ciclev10028621m	scaffold_8	20607774	20611605
Lp0017			-	-	-	-	-	-		Ciclev10031724m	scaffold_4	23556540	23559896
Lp0018			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Lp0019		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709	C_unshiu_00622:mRNA_2.1	C_unshiu_00622	28630	30583	50S ribosomal protein L29, chloroplastic			KmG-02	4.377	JtR-02	-6.938
Lp0020			-	-	-	-	-	-		Ciclev10017167m	scaffold_2	34841952	34844319
Lp0021		AtAvailable marker	O	-	-	-	-	O		Ciclev10021502m	scaffold_3	1771668	1774647	C_unshiu_00534:mRNA_8.2	C_unshiu_00534	53508	55845	Aquaporin
Lp0022			-	-	-	-	-	-		Ciclev10032703m	scaffold_4	2422861	2424838
Lp0023		OOthers	-	-	-	-	-	-
Lp0024		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI010,SI302	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q	AGI-02	74.555							RP-02.2	17.330
Lp0025			-	-	-	-	-	-		Ciclev10009567m	scaffold_1	25816949	25818472
Lp0026			-	-	-	-	-	-		Ciclev10030880m	scaffold_4	3323209	3331825
Lp0027			-	-	-	-	-	-		Ciclev10032174m	scaffold_4	14967254	14971449
Lp0028			-	-	-	-	-	-		Ciclev10014842m	scaffold_2	22362548	22366644
Lp0029			-	-	-	-	-	-		Ciclev10003645m	scaffold_5	329518	331024
Lp0030			-	-	-	-	-	-		Ciclev10031831m	scaffold_4	23185703	23187916
Lp0031			-	-	-	-	-	-		Ciclev10027944m	scaffold_8	22261408	22266208	C_unshiu_00639:mRNA_5.1	C_unshiu_00639	45321	49901	N-terminal isoform 1	AGI-08	9.183
Lp0032		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI286					C_unshiu_00679:mRNA_13.1	C_unshiu_00679	124222	132199	CwfJ-like family protein, putative isoform 1
Lp0033			-	-	-	-	-	-		Ciclev10016127m	scaffold_2	30923398	30926574
Lp0034		ULess informative for main cultivars	O	-	-	-	-	-						C_unshiu_00087:mRNA_54.1	C_unshiu_00087	395005	398280	Peroxisomal membrane protein 13
Lp0035			-	-	-	-	-	-		Ciclev10005111m	scaffold_9	27259813	27263097
Lp0036			-	-	-	-	-	-		Ciclev10012725m	scaffold_6	12998055	13001834
Lp0037		OOthers	-	-	-	-	-	-		Ciclev10025045m	scaffold_7	18963487	18968140
Lp0038			-	-	-	-	-	-		Ciclev10029808m	scaffold_8	6686602	6688894
Lp0039			-	-	-	-	-	-		Ciclev10004396m	scaffold_9	22309970	22314448
Lp0040		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor			KmG-02	52.181	JtR-02	25.334
Lp0041		AAvailable marker	-	-	-	-	-	O		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28			KmG-032	17.549	JtR-031	14.643			RP-03	29.608
Lp0042			-	-	-	-	-	-		Ciclev10028234m	scaffold_8	21342050	21345004
Lp0043		OOthers	-	-	-	-	-	-		Ciclev10015870m	scaffold_2	35334245	35336841
Lp0044			-	-	-	-	-	-		Ciclev10032981m	scaffold_4	23618424	23622719
Lp0045			-	-	-	-	-	-
Lp0046			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658
Lp0047			-	-	-	-	-	-
Lp0048			-	-	-	-	-	-		Ciclev10022383m	scaffold_3	46374292	46377587
Lp0049	Lp0049.k		-	-	-	-	-	-		Ciclev10021491m	scaffold_3	50736750	50739959
Lp0101			-	-	-	-	-	-		Ciclev10002394m	scaffold_5	15991108	15996585
Lp0102		MDisagree by Marco analysis	O	-	-	-	-	-	SI080,SI319,SI360,SI378	Ciclev10020840m	scaffold_3	30648732	30651259	C_unshiu_00759:mRNA_1.1	C_unshiu_00759	917	3353	Senescence-related gene 1	AGI-05	42.737	KmG-05S	41.895	JtR-05	28.682	NAT-05	37.917	RP-05	51.879
Lp0103		OOthers	-	-	-	-	-	-		Ciclev10012274m	scaffold_6	16393309	16395378	C_unshiu_00332:mRNA_15.1	C_unshiu_00332	142648	144673	Pyridoxal biosynthesis lyase pdxS									RP-04	11.437
Lp0104			-	-	-	-	-	-		Ciclev10017466m	scaffold_2	27579627	27581411
Lp0105		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI113,SI163,SI254	Ciclev10026412m	scaffold_7	815904	817239	C_unshiu_00353:mRNA_13.1	C_unshiu_00353	92033	93437	Hypothetical protein	AGI-02	75.939
Lp0106			-	-	-	-	-	-		Ciclev10030683m	scaffold_4	22868978	22880751
Lp0107			-	-	-	-	-	-		Ciclev10030913m	scaffold_4	21916592	21922770
Lp0108		AAvailable marker	-	-	-	-	-	O		Ciclev10026340m	scaffold_7	5554619	5556993	C_unshiu_00761:mRNA_5.1	C_unshiu_00761	18704	21072	40S ribosomal protein S6			KmG-02	41.508	JtR-02	18.351
Lp0109		OOthers	O	-	-	-	-	-		Ciclev10020902m	scaffold_3	17561127	17562695
Lp0110			-	-	-	-	-	-		Ciclev10009769m	scaffold_1	24271753	24272644
Lp0111			-	-	-	-	-	-		Ciclev10022339m	scaffold_3	36096009	36099799
Lp0112		AAvailable marker	O	-	-	-	-	-		Ciclev10032923m	scaffold_4	3749809	3751724	C_unshiu_00236:mRNA_28.1	C_unshiu_00236	161422	163318	ATP synthase subunit d, mitochondrial	AGI-07	19.603							RP-07	50.962
Lp0113			-	-	-	-	-	-		Ciclev10007510m	scaffold_1	24480591	24484723
Lp0114			-	-	-	-	-	-		Ciclev10008315m	scaffold_1	28623624	28626008
Lp0115			-	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065
Lp0116		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028879m	scaffold_8	19397294	19398741	C_unshiu_02034:mRNA_3.1	C_unshiu_02034	7573	8901	DUF3049 family protein					JtR-08	18.207	NAT-05	47.659
Lp0117			-	-	-	-	-	-		Ciclev10002215m	scaffold_5	28815314	28816638
Lp0118		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_00008:mRNA_8.1	C_unshiu_00008	46363	54318	Protein trichome birefringence-like 33	AGI-02	73.759	KmG-02	75.522	JtR-02	24.745
Lp0119		AAvailable marker	-	-	-	-	O	O	SI276	Ciclev10028631m	scaffold_8	24315720	24317671	C_unshiu_00021:mRNA_65.1	C_unshiu_00021	426040	431920	Hypothetical protein	AGI-08	8.544
Lp0120			O	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Lp0121			-	-	-	-	-	-		Ciclev10017090m	scaffold_2	34829300	34831997
Lp0122		MDisagree by Marco analysis	O	-	-	-	-	-	SI170	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q							NAT-02S	69.942	RP-02.2	17.330
Lp0123			-	-	-	-	-	-		Ciclev10000541m	scaffold_5	32889614	32896199
Lp0124			-	-	-	-	-	-		Ciclev10015245m	scaffold_2	10087523	10092758
Lp0125			-	-	-	-	-	-		Ciclev10004499m	scaffold_9	11150758	11155385
Lp0126		AAvailable marker	O	-	-	-	O	O		Ciclev10025164m	scaffold_7	3946818	3949964	C_unshiu_00801:mRNA_10.1	C_unshiu_00801	97228	100216	Phototropic-responsive NPH3 family protein	AGI-02	65.295	KmG-02	54.892	JtR-02	26.278			RP-02.2
Lp0127			-	-	-	-	-	-		Ciclev10029357m	scaffold_8	21374019	21379609
Lp0128			-	-	-	-	-	-		Ciclev10027734m	scaffold_8	2848884	2853210
Lp0129			-	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949
Lp0130			-	-	-	-	-	-		Ciclev10008029m	scaffold_1	11512415	11514434
Lp0131			-	-	-	-	-	-		Ciclev10006247m	scaffold_9	20390517	20391131
Lp0132			-	-	-	-	-	-		Ciclev10014204m	scaffold_2	5469050	5475142
Lp0133		AtAvailable marker	O	-	-	-	O	O		Ciclev10021187m	scaffold_3	39657613	39660222	C_unshiu_00037:mRNA_84.1	C_unshiu_00037	603033	605555	Class I chitinase	AGI-05	48.590	KmG-05S	60.040			NAT-05	26.483	RP-05	65.128
Lp0134			-	-	-	-	-	-		Ciclev10007510m	scaffold_1	24480591	24484723
Lp0135			-	-	-	-	-	-		Ciclev10002870m	scaffold_5	39412819	39414334	C_unshiu_00457:mRNA_3.1	C_unshiu_00457	27521	28982	Xylem serinease 1-like protein					JtR-05	41.854
Lp0136			-	-	-	-	-	-		Ciclev10014127m	scaffold_2	10500879	10504450
Lp0137			-	-	-	-	-	-		Ciclev10021187m	scaffold_3	39657613	39660222
Lp0138			-	-	-	-	-	-		Ciclev10008908m	scaffold_1	2599957	2603377
Lp0139			-	-	-	-	-	-		Ciclev10021991m	scaffold_3	1470163	1473304
Lp0140		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10016399m	scaffold_2	32629908	32634194	C_unshiu_00070:mRNA_52.1	C_unshiu_00070	393864	397918	Universal stress protein A-like protein			KmG-02	12.229	JtR-02	2.765			RP-02	8.172
Lp0141			-	-	-	-	-	-		Ciclev10016648m	scaffold_2	22386727	22388706
Lp0142			-	-	-	-	-	-		Ciclev10032977m	scaffold_4	2976873	2978308
Lp0143		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10019139m	scaffold_3	6076949	6080875	C_unshiu_00159:mRNA_40.1	C_unshiu_00159	339926	343475	Translation elongation factor G	AGI-05	45.297			JtR-05	18.056
Lp0144			-	-	-	-	-	-		Ciclev10027174m	scaffold_7	9452114	9461436
Lp0145			-	-	-	-	-	-						C_unshiu_01491:mRNA_8.1	C_unshiu_01491	47122	50568	Class I glutamine amidotransferase superfamily protein			KmG-05S	40.802	JtR-05
Lp0201			-	-	-	-	-	-		Ciclev10028459m	scaffold_8	23365481	23369843
Lp0202			O	-	-	-	-	-		Ciclev10006509m	scaffold_9	3131006	3134438	C_unshiu_00051:mRNA_31.2	C_unshiu_00051	239802	243699	NEDD8-activating enzyme E1 catalytic subunit	AGI-03	23.085
Lp0203			-	-	-	-	-	-		Ciclev10015577m	scaffold_2	27167289	27171203
Lp0204			-	-	-	-	-	-		Ciclev10008687m	scaffold_1	24523400	24526186
Lp0205			-	-	-	-	-	-		Ciclev10008932m	scaffold_1	4541676	4543982
Lp0206			O	-	-	-	-	-		Ciclev10011764m	scaffold_6	20836509	20840107	C_unshiu_00052:mRNA_56.1	C_unshiu_00052	452105	455631	Monodehydroascorbate reductase	AGI-04	58.655
Lp0207			O	-	-	-	-	-		Ciclev10021695m	scaffold_3	6140332	6142252	C_unshiu_01103:mRNA_8.1	C_unshiu_01103	67531	69104	Protein ODORANT1	AGI-05	45.374							RP-05	25.010
Lp0208			-	-	-	-	-	-		Ciclev10018482m	scaffold_3	45704361	45713084	C_unshiu_00326:mRNA_24.1	C_unshiu_00326	146528	154002	ABC transporter C family member 3	AGI-03	15.136					NAT-03	28.397
Lp0209			-	-	-	-	-	-
Lp0210			-	-	-	-	-	-		Ciclev10012425m	scaffold_6	17651466	17653457
Lp0211			O	-	-	-	-	-		Ciclev10009567m	scaffold_1	25816949	25818472	C_unshiu_00066:mRNA_48.1	C_unshiu_00066	279404	280861	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1	AGI-01	30.175							RP-01	24.533
Lp0212			O	-	-	-	-	-		Ciclev10030930m	scaffold_4	22697056	22699336	C_unshiu_00004:mRNA_48.1	C_unshiu_00004	381547	383756	Polygalacturonase 1 beta-like protein 3	AGI-07	69.544
Lp0213			-	-	-	-	-	-		Ciclev10012814m	scaffold_6	21537952	21540938
Lp0214			-	-	-	-	-	-		Ciclev10004881m	scaffold_9	17070431	17072209
Lp0215			-	-	-	-	-	-		Ciclev10019069m	scaffold_3	3919656	3924283
Lp0216			-	-	-	-	-	-		Ciclev10000670m	scaffold_5	8440416	8447120
Lp0217			-	-	-	-	-	-		Ciclev10032654m	scaffold_4	18274171	18276675
Lp0218			O	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Lp0219			-	-	-	-	-	-		Ciclev10032329m	scaffold_4	6128952	6131314	C_unshiu_01202:mRNA_8.1	C_unshiu_01202	57691	60017	Acyl-CoA N-acyltransferases superfamily protein isoform 1	AGI-01	61.636					NAT-01S	60.000
Lp0220			O	-	-	-	-	-		Ciclev10000749m	scaffold_5	39221210	39227401	C_unshiu_00495:mRNA_21.1	C_unshiu_00495	125230	136174	Hypothetical protein	AGI-07	14.968
Lp0221			-	-	-	-	-	-		Ciclev10015663m	scaffold_2	32960362	32966170
Lp0222			-	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Lp0223			-	-	-	-	-	-		Ciclev10000876m	scaffold_5	40154569	40160983
Lp0224			-	-	-	-	-	-		Ciclev10031564m	scaffold_4	9627760	9633617
Lp0225			-	-	-	-	-	-		Ciclev10020487m	scaffold_3	35943915	35948556
Lp0226			O	-	-	-	-	-	SI210	Ciclev10027999m	scaffold_8	2831832	2837109	C_unshiu_00152:mRNA_19.1	C_unshiu_00152	138714	144356	Embryonic polyadenylate-binding protein	AGI-08	73.527
Lp0227			-	-	-	-	-	-		Ciclev10009468m	scaffold_1	28429428	28433154
Lp0228			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Lp0229			O	-	-	-	-	-		Ciclev10015636m	scaffold_2	24637053	24639946	C_unshiu_00136:mRNA_24.1	C_unshiu_00136	221432	223640	ARM repeat superfamily protein									RP-06.1	25.198
Lp0230			O	-	-	-	-	-		Ciclev10009651m	scaffold_1	20094575	20097443
Lp0231			-	-	-	-	-	-		Ciclev10011809m	scaffold_6	6265278	6272266
Lp0232			O	-	-	-	-	-		Ciclev10030590m	scaffold_4	21120135	21127140	C_unshiu_00010:mRNA_105.1	C_unshiu_00010	751317	757205	CHASE-domain containing histidine kinase 1									RP-07	19.079
Lp0234			-	-	-	-	-	-		Ciclev10030998m	scaffold_4	17143350	17147918
Lp0235			O	-	-	-	-	-		Ciclev10019848m	scaffold_3	9466071	9468445	C_unshiu_00227:mRNA_19.1	C_unshiu_00227	186549	194369	Nepenthesin II	AGI-05	43.412							RP-05	44.731
Lp0236			O	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Lp0237	Lp0237.k		-	-	-	-	-	-		Ciclev10007524m	scaffold_1	25987803	25992258	C_unshiu_00066:mRNA_23.1	C_unshiu_00066	112710	117006	Pyrophosphate-energized vacuolar membrane proton pump	AGI-01	29.815	KmG-01	13.444	JtR-01S	57.629	NAT-01S	8.967
Lp0301.2			-	-	-	-	-	-		Ciclev10020671m	scaffold_3	35321971	35324490
Mf0001		OOthers	-	-	-	-	-	-
Mf0002			-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860
Mf0003		AAvailable marker	-	-	-	-	-	O	SI228
Mf0004			-	-	-	-	-	-
Mf0005			-	-	-	-	-	-
Mf0006			-	-	-	-	-	-		Ciclev10010036m	scaffold_1	17554790	17556053
Mf0007		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10008907m	scaffold_1	17471330	17472833	C_unshiu_00044:mRNA_52.1	C_unshiu_00044	424343	425685	NADPH-dependent codeinone reductase-like protein
Mf0008		OOthers	-	-	-	-	-	-						No													RP-06.2
Mf0009			-	-	-	-	-	-
Mf0010		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI048,SI149	Ciclev10032902m	scaffold_4	19467669	19468803	C_unshiu_00099:mRNA_4.1	C_unshiu_00099	12446	13357	30S ribosomal protein 3, chloroplastic	AGI-07	55.503	KmG-07	42.271	JtR-07	35.215	NAT-07
Mf0011			-	-	-	-	-	-
Mf0012		AAvailable marker	-	-	-	-	-	O	SI131	Ciclev10019300m	scaffold_3	26517176	26525778	No
Mf0013			-	-	-	-	-	-
Mf0014			-	-	-	-	-	-
Mf0015		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10000510m	scaffold_5	35125019	35129817	No
Mf0016			-	-	-	-	-	-		Ciclev10002951m	scaffold_5	33411667	33413970
Mf0017		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin	AGI-05	44.674
Mf0019	Mf0018.2		-	-	-	-	-	-		Ciclev10032864m	scaffold_4	12356081	12357713
Mf0020			-	-	-	-	-	-		Ciclev10023252m	scaffold_3	2645845	2647776	No													SA-05	30.880
Mf0022	Mf0021.2		-	-	-	-	-	-
Mf0024	Mf0023.2		-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348
Mf0025			-	-	-	-	-	-		Ciclev10009756m	scaffold_1	25592494	25593617
Mf0027	Mf0026.2		-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Mf0029	Mf0028.2	Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Mf0031	Mf0030.2		-	-	-	-	-	-
Mf0032		OOthers	-	-	-	-	-	-		Ciclev10013688m	scaffold_6	16004467	16005081
Mf0033		AAvailable marker	-	-	-	-	O	O		Ciclev10010044m	scaffold_1	6227617	6228389	C_unshiu_00075:mRNA_11.1	C_unshiu_00075	123779	124531	Hypothetical protein	AGI-01	62.570	KmG-01	46.353	JtR-01S	106.811	NAT-01S	77.905
Mf0034		OOthers	O	-	-	-	-	-		Ciclev10031304m	scaffold_4	1559490	1563887	C_unshiu_00012:mRNA_100.1	C_unshiu_00012	732963	736971	DEAD-box ATP-dependent RNA helicase 27									RP-07	73.631
Mf0035			-	-	-	-	-	-
Mf0037			-	-	-	-	-	-
Mf0038			-	-	-	-	-	-
Mf0039		AAvailable marker	O	-	-	-	O	O	SI016,SI147					C_unshiu_00343:mRNA_25.1	C_unshiu_00343	221381	224081	PLAC8 family protein	AGI-05	5.510	KmG-05S	5.643	JtR-05	10.014
Mf0040			-	-	-	-	-	-		Ciclev10002354m	scaffold_5	42809560	42811717
Mf0041		AAvailable marker	-	-	-	-	O	O		Ciclev10022012m	scaffold_3	45076821	45080633	C_unshiu_00069:mRNA_16.1	C_unshiu_00069	123654	127483	Histidine-containing phosphotransfer protein 1	AGI-05	56.534	KmG-05S	73.977	JtR-05	38.393
Mf0044			-	-	-	-	-	-		Ciclev10004832m	scaffold_9	28081760	28084212
Mf0045			-	-	-	-	-	-		Ciclev10009632m	scaffold_1	22844241	22846485
Mf0046			-	-	-	-	-	-		Ciclev10009632m	scaffold_1	22844241	22846485
Mf0047		DDominant marker	-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081	C_unshiu_00036:mRNA_24.2	C_unshiu_00036	126753	128428	Late embryogenesis abundant protein Lea5-D	AGI-03	14.323	KmG-031	7.139			NAT-03	50.708
Mf0048			-	-	-	-	-	-		Ciclev10014833m	scaffold_2	35204970	35210387
Mf0049			-	-	-	-	-	-
Mf0050			-	-	-	-	-	-		Ciclev10010044m	scaffold_1	6227617	6228389
Mf0051			-	-	-	-	-	-		Ciclev10012294m	scaffold_6	15434942	15438427
Mf0052			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032	C_unshiu_01194:mRNA_11.1	C_unshiu_01194	83573	84813	Envelope glycoprotein
Mf0052.2			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032
Mf0054			-	-	-	-	-	-
Mf0055		DDominant marker	-	-	-	-	O	O		Ciclev10022212m	scaffold_3	45551345	45552620	C_unshiu_01674:mRNA_4.1	C_unshiu_01674	17777	28549	Hypothetical protein	AGI-05	57.948	KmG-05S	75.866	JtR-05	38.749	NAT-05	39.573
Mf0056.2	Mf0055.2		-	-	-	-	-	-		Ciclev10022212m	scaffold_3	45551345	45552620
Mf0057		OOthers	-	-	-	-	-	-		Ciclev10002349m	scaffold_5	42489684	42491501	No
Mf0058		T3 or more alleleic model	-	-	-	-	-	-		Ciclev10022378m	scaffold_3	46818817	46822856	C_unshiu_00053:mRNA_58.1	C_unshiu_00053	481338	485184	Nitrogen regulatory protein P-II	AGI-08	57.196			JtR-05	39.516
Mf0059			-	-	-	-	-	-		Ciclev10032222m	scaffold_4	1586790	1589604
Mf0060			-	-	-	-	-	-						C_unshiu_00715:mRNA_6.1	C_unshiu_00715	29601	30242	Hypothetical protein					JtR-07	56.497
Mf0061			-	-	-	-	-	-
Mf0062			-	-	-	-	-	-		Ciclev10009010m	scaffold_1	26773396	26776856
Mf0063			-	-	-	-	-	-		Ciclev10006352m	scaffold_9	30456144	30458784
Mf0064			-	-	-	-	-	-		Ciclev10015846m	scaffold_2	27344587	27346090
Mf0065			-	-	-	-	-	-		Ciclev10021816m	scaffold_3	32925664	32929662
Mf0066			-	-	-	-	-	-
Mf0067		OOthers	-	-	-	-	-	-		Ciclev10008855m	scaffold_1	7264569	7269002	C_unshiu_00837:mRNA_9.1	C_unshiu_00837	91807	96079	Protein phosphatase 1 regulatory subunit pprA			KmG-032	18.460	JtR-031	13.247
Mf0068			-	-	-	-	-	-		Ciclev10023101m	scaffold_3	2718186	2719011
Mf0069			-	-	-	-	-	-		Ciclev10013297m	scaffold_6	13750671	13752605
Mf0070		MDisagree by Marco analysis	O	-	-	-	-	-	SI017	Ciclev10017346m	scaffold_2	3067337	3069249	C_unshiu_00246:mRNA_8.1	C_unshiu_00246	68251	69988	Hypothetical protein	AGI-07	36.616			JtR-07	52.611			RP-07	19.079
Mf0071			-	-	-	-	-	-		Ciclev10001084m	scaffold_5	39480647	39484776
Mf0072		AAvailable marker	-	-	-	-	O	O		Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein	AGI-04	91.104	KmG-04	58.483					RP-04	8.126
Mf0073		HDisagree on Clementine haploid genotype	-	-	-	-	-	-						C_unshiu_00069:mRNA_5.1	C_unshiu_00069	25589	28375	Hypothetical protein					JtR-05	38.749	NAT-05	44.567
Mf0074			-	-	-	-	-	-		Ciclev10008734m	scaffold_1	6617921	6622625
Mf0075			-	-	-	-	-	-
Mf0076		AAvailable marker	-	-	-	-	O	O		Ciclev10012554m	scaffold_6	11704199	11706676	C_unshiu_00207:mRNA_15.1	C_unshiu_00207	132539	134984	Cytosolic ascorbate peroxidase	AGI-08	93.624
Mf0077			-	-	-	-	-	-		Ciclev10001792m	scaffold_5	39828396	39834822
Mf0078			-	-	-	-	-	-		Ciclev10001800m	scaffold_5	17564729	17565994
Mf0079		AAvailable marker	O	-	-	-	O	O	SI067	Ciclev10028839m	scaffold_8	24721937	24724569	C_unshiu_00984:mRNA_8.1	C_unshiu_00984	55676	58212	Cinnamoyl CoA reductase	AGI-08	3.409	KmG-08				NAT-082
Mf0080		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663	C_unshiu_00217:mRNA_35.1	C_unshiu_00217	286418	288656	Transmembrane BAX inhibitor motif-containing protein 4	AGI-05	55.049	KmG-05S	64.740	JtR-05	38.503			RP-04	37.046
Mf0081.2	Mf0080.2	OOthers	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663
Mf0082			-	-	-	-	-	-		Ciclev10000921m	scaffold_5	15445701	15450041
Mf0083		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10015092m	scaffold_2	33837403	33842156	No					AGI-06	39.963
Mf0084		OOthers	-	-	-	-	-	-	SI383	Ciclev10012898m	scaffold_6	40381	43868	C_unshiu_01371:mRNA_1.1	C_unshiu_01371	17746	21242	ADP-ribosylation factor A1F	AGI-04	114.409	KmG-04	66.806	JtR-04	11.413
Mf0085			-	-	-	-	-	-		Ciclev10018526m	scaffold_3	28293142	28298913
Mf0086		AAvailable marker	O	-	-	-	O	O	SI220,SI315	Ciclev10009756m	scaffold_1	25592494	25593617	C_unshiu_00066:mRNA_75.1	C_unshiu_00066	500992	501833	17.9 kDa class II heat shock protein	AGI-01	26.428	KmG-01	19.692	JtR-01S	57.666			RP-01	69.936
Mf0087			-	-	-	-	-	-		Ciclev10023194m	scaffold_3	32063430	32064847
Mf0088		OOthers	O	-	-	-	-	-		Ciclev10001453m	scaffold_5	5104067	5106917	C_unshiu_00108:mRNA_11.1	C_unshiu_00108	101283	105493	60S ribosomal protein L3									RP-09
Mf0089			-	-	-	-	-	-		Ciclev10031989m	scaffold_4	12678671	12681681
Mf0090		AAvailable marker	-	O	-	-	O	O		Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.869	KmG-02	11.182	JtR-02	3.182			RP-02	8.191
Mf0091			-	-	-	-	-	-		Ciclev10019105m	scaffold_3	6748406	6756264
Mf0092		AAvailable marker	-	-	-	-	O	O	SI138	Ciclev10012056m	scaffold_6	21137783	21142157	C_unshiu_00052:mRNA_27.2	C_unshiu_00052	168316	172622	Phosphopyruvate hydratase	AGI-04	59.190	KmG-04	30.795			NAT-04	11.576
Mf0093			-	-	-	-	-	-		Ciclev10005964m	scaffold_9	22732690	22736939
Mf0094		AAvailable marker	-	-	-	-	O	O		Ciclev10026594m	scaffold_7	3721375	3722616	C_unshiu_00169:mRNA_29.1	C_unshiu_00169	217948	219072	Maternal effect embryo arrest protein	AGI-02	67.666	KmG-02	52.124	JtR-02	25.334
Mf0095		OOthers	O	-	-	-	-	-	SI290	Ciclev10005778m	scaffold_9	21216748	21221111	C_unshiu_00160:mRNA_34.1	C_unshiu_00160	290257	294371	Transmembrane proteins 14C, putative isoform 1			KmG-032		JtR-031	11.958			RP-03	43.323
Mf0096		OOthers	-	-	-	-	-	-	SI249,SI333	Ciclev10018252m	scaffold_2	27774863	27778271	C_unshiu_00745:mRNA_6.1	C_unshiu_00745	48150	62370	Hypothetical protein	AGI-06	60.007	KmG-06	22.141	JtR-06S	5.708	NAT-06S	10.082
Mf0097		AAvailable marker	O	O	-	O	O	O	SI235,SI365					No					AGI-07	44.663	KmG-07	50.959	JtR-07	44.863	NAT-07	3.290	RP-07	46.168
Mf0098.2	Mf0097.2		-	-	-	-	-	-
Mf0099		OOthers	-	-	-	-	-	-						No							KmG-06	6.822	JtR-06S		NAT-06S
Mf0100			O	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Mf0101		OOthers	-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Mf0102			-	-	-	-	-	-
Ov0001			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Ov0002		AAvailable marker	O	-	-	-	O	O	SI110,SI179	Ciclev10032770m	scaffold_4	2422861	2424838	C_unshiu_00979:mRNA_13.2	C_unshiu_00979	50508	52478	60S ribosomal protein L10	AGI-07	13.657			JtR-07	68.221			RP-07	82.035
Ov0003			-	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770
Ov0004			-	-	-	-	-	-		Ciclev10025545m	scaffold_7	20360086	20363290	C_unshiu_00650:mRNA_9.1	C_unshiu_00650	86670	89289	Myo-inositol-1 phosphate synthase			KmG-02	17.680			NAT-02S
Ov0005		AAvailable marker	-	-	-	-	O	O	SI243,SI331	Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_02126:mRNA_2.1	C_unshiu_02126	9391	13319	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	AGI-05	47.986
Ov0006		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	25.587	JtR-08	27.669
Ov0007.2			-	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918
Ov0008			-	-	-	-	-	-		Ciclev10028019m	scaffold_8	17659925	17664551
Ov0009			-	-	-	-	-	-		Ciclev10023099m	scaffold_3	47257565	47258746
Ov0010			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0011			-	-	-	-	-	-		Ciclev10002024m	scaffold_5	34558362	34564638
Ov0012			-	-	-	-	-	-		Ciclev10019638m	scaffold_3	2933121	2937460	C_unshiu_00092:mRNA_50.1	C_unshiu_00092	356984	361021	Aldehyde dehydrogenase			KmG-05S	100.000
Ov0013		OOthers	-	-	-	-	-	-		Ciclev10005251m	scaffold_9	18058387	18060752	C_unshiu_00556:mRNA_14.1	C_unshiu_00556	103101	105466	Caffeic acid 3-O-methyltransferase	AGI-03	50.691	KmG-032	18.852	JtR-031	11.918			RP-03	38.986
Ov0014			-	-	-	-	-	-		Ciclev10000825m	scaffold_5	40617691	40619818
Ov0015		OOthers	O	-	-	-	-	-	SI304	Ciclev10026223m	scaffold_7	8255046	8256442	C_unshiu_02827:mRNA_2.1	C_unshiu_02827	15986	17224	Stem 28 kDa glycoprotein	AGI-02	34.494	KmG-02	35.126	JtR-02	19.319
Ov0016			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0017			-	-	-	-	-	-		Ciclev10011979m	scaffold_6	18167218	18172180
Ov0018		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00082:mRNA_34.1	C_unshiu_00082	267163	269630	Elongation factor 1-alpha
Ov0019			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309
Ov0020		AAvailable marker	O	-	-	-	O	O	SI055,SI143,SI213	Ciclev10011842m	scaffold_6	21598429	21600967	C_unshiu_00037:mRNA_7.2	C_unshiu_00037	37719	40241	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase	AGI-04	55.145	KmG-04	22.465			NAT-04	3.806	RP-04	40.905
Ov0021			-	-	-	-	-	-		Ciclev10015535m	scaffold_2	11863906	11865549
Ov0022			-	-	-	-	-	-		Ciclev10011738m	scaffold_6	20161613	20163972
Ov0023			-	-	-	-	-	-		Ciclev10018991m	scaffold_3	49827655	49832343
Ov0024			-	-	-	-	-	-		Ciclev10020504m	scaffold_3	46981628	46984276
Ov0025			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Ov0026	Ov0026.k		-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377
Ov0027	Ov0027.em		-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377	C_unshiu_00584:mRNA_9.1	C_unshiu_00584	74089	76266	60S ribosomal protein L28	AGI-03	51.749
Ov0101			-	-	-	-	-	-		Ciclev10001010m	scaffold_5	40691801	40694522
Ov0102			-	-	-	-	-	-		Ciclev10019301m	scaffold_3	972289	976751
Ov0103			-	-	-	-	-	-		Ciclev10019410m	scaffold_3	5991281	5995312
Ov0104		AAvailable marker	O	-	-	-	O	O	SI216	Ciclev10004850m	scaffold_9	13440332	13442904	C_unshiu_02379:mRNA_2.1	C_unshiu_02379	22906	25482	Obtusifoliol 14-alpha demethylase	AGI-08	56.724			JtR-08	28.207
Ov0105		MDisagree by Marco analysis	O	-	-	-	-	-	SI126,SI278	Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant							NAT-07	36.023	RP-07
Ov0105.2	Ov0106.2		-	-	-	-	-	-		Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant	AGI-07	74.064	KmG-07	15.390	JtR-07	5.947
Ov0107			-	-	-	-	-	-		Ciclev10011477m	scaffold_6	18855028	18858879
Ov0108			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936
Ov0109		MDisagree by Marco analysis	O	-	-	-	-	-	SI172,SI202	Ciclev10004309m	scaffold_9	30513333	30517676	C_unshiu_00003:mRNA_13.1	C_unshiu_00003	122283	126575	Elongation factor 2	AGI-03	71.060			JtR-032	13.729			RP-03	71.532
Ov0110			-	-	-	-	-	-		Ciclev10009770m	scaffold_1	22118203	22120791
Ov0111		AAvailable marker	-	-	-	-	O	O		Ciclev10000069m	scaffold_5	8532280	8539677	C_unshiu_00033:mRNA_6.1	C_unshiu_00033	57678	65071	TSA: Wollemia nobilis transcribed RNA sequence	AGI-09	85.810	KmG-09	11.923	JtR-09S	6.157			RP-09	20.238
Ov0112		OOthers	-	-	-	-	-	-		Ciclev10021050m	scaffold_3	33252463	33253730	C_unshiu_01571:mRNA_4.1	C_unshiu_01571	43836	45084	Sulfotransferase			KmG-05S	42.335					RP-05	53.076
Ov0113	Ov0112.2		-	-	-	-	-	-		Ciclev10021050m	scaffold_3	33252463	33253730
Ov0114			-	-	-	-	-	-						C_unshiu_00206:mRNA_12.3	C_unshiu_00206	75980	77488	Nucleoside diphosphate kinase			KmG-032	18.485	JtR-031	11.761
Ov0115			-	-	-	-	-	-		Ciclev10008504m	scaffold_1	13063201	13068419
Ov0116			-	-	-	-	-	-		Ciclev10032931m	scaffold_4	3193875	3196468	C_unshiu_00342:mRNA_22.1	C_unshiu_00342	154980	164222	Hypothetical protein			KmG-02	53.208	JtR-02	27.051			RP-02.2	5.192
Ov0117		AAvailable marker	O	-	-	-	O	O	SI040	Ciclev10010926m	scaffold_6	19105139	19113780	C_unshiu_00089:mRNA_17.1	C_unshiu_00089	153791	161685	Hypothetical protein	AGI-04	66.455							RP-04	28.160
Ov0118		AAvailable marker	O	-	-	-	O	O	SI357	Ciclev10001621m	scaffold_5	34294853	34297359	C_unshiu_03047:mRNA_1.1	C_unshiu_03047	1418	3450	Dihydrodipicolinate synthase	AGI-04	34.838	KmG-09	36.138	JtR-09S	72.673	NAT-09	55.867
Ov0119			-	-	-	-	-	-		Ciclev10016788m	scaffold_2	29172772	29175757
Ov0120			-	-	-	-	-	-		Ciclev10014574m	scaffold_2	5533591	5538729
Ov0121		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase							NAT-081
Ov0122		OOthers	-	-	-	-	-	-		Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_01535:mRNA_2.2	C_unshiu_01535	14018	19080	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase			KmG-05S	65.738	JtR-05	41.268
Ov0123	Ov0122.2		-	-	-	-	-	-		Ciclev10019557m	scaffold_3	41636616	41641083
Ov0124			-	-	-	-	-	-		Ciclev10002135m	scaffold_5	29706688	29710388
Ov0125		AAvailable marker	-	-	-	-	O	O		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase	AGI-08	41.398
Ov0126		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10022482m	scaffold_3	46814909	46817474
Ov0127	Ov0126.2		-	-	-	-	-	-	SI124,SI284	Ciclev10022482m	scaffold_3	46814909	46817474	C_unshiu_00053:mRNA_57.3	C_unshiu_00053	477728	479995	ADP-ribosylation factor A1F	AGI-05	65.510	KmG-05S	81.631	JtR-05	45.715			RP-05	64.195
Ov0128		OOthers	-	-	-	-	-	-		Ciclev10015870m	scaffold_2	35334245	35336841
Ov0129	Ov0129.k		-	-	-	-	-	-		Ciclev10030928m	scaffold_4	2717014	2719856
Ov0301		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI078	Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	23.526	JtR-05	19.932			RP-05	21.590
Ov0302	Ov0301.2		-	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor
Ov0303			-	-	-	-	-	-		Ciclev10011600m	scaffold_6	25160851	25164999
Ov0304			-	-	-	-	-	-		Ciclev10000702m	scaffold_5	6482366	6484923
Ov0305		MDisagree by Marco analysis	O	-	-	-	-	-	SI028,SI292	Ciclev10012499m	scaffold_6	16909492	16912088	C_unshiu_00008:mRNA_65.1	C_unshiu_00008	366943	369504	40S ribosomal protein S4	AGI-08	88.433	KmG-04	45.755					RP-04	15.410
Ov0306		OOthers	-	-	-	-	-	-	SI382	Ciclev10026199m	scaffold_7	224443	227133	No					AGI-02	79.663	KmG-02	72.516	JtR-02	8.671	NAT-02S	60.000
Ov0307		OOthers	-	-	-	-	-	-		Ciclev10015790m	scaffold_2	4937047	4940138
Ov0308			-	-	-	-	-	-		Ciclev10032476m	scaffold_4	16730150	16735004
Ov0309			-	-	-	-	-	-		Ciclev10022230m	scaffold_3	8078609	8083078
Ov0310			-	-	-	-	-	-		Ciclev10023404m	scaffold_3	48463395	48465325	C_unshiu_00026:mRNA_46.1	C_unshiu_00026	334715	336716	Lanatoside 15-O-acetylesterase			KmG-01	21.291	JtR-01S	61.287
Ov0311			-	-	-	-	-	-		Ciclev10022001m	scaffold_3	18341166	18342395	C_unshiu_00417:mRNA_9.1	C_unshiu_00417	93426	94543	Kunitz trypsin inhibitor			KmG-04	10.598			NAT-09	82.730
Ov0312			-	-	-	-	-	-		Ciclev10018858m	scaffold_3	1344192	1349935	C_unshiu_00541:mRNA_19.1	C_unshiu_00541	170170	175878	Spastin									SA-09	8.022
Ov0313		OOthers	-	-	-	-	-	-		Ciclev10002372m	scaffold_5	41844984	41847835	C_unshiu_00009:mRNA_157.1	C_unshiu_00009	1013478	1016014	Diphthine synthase			KmG-09	79.072
Ov0314		AAvailable marker	O	-	-	-	O	O	SI107	Ciclev10029386m	scaffold_8	8176371	8177435	C_unshiu_00728:mRNA_1.1	C_unshiu_00728	4070	4922	Mannan polymerase complex subunit mnn9	AGI-08	56.724	KmG-08	58.356	JtR-08	21.829			RP-08	41.217
Ov0315		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10013467m	scaffold_6	23430375	23436161	C_unshiu_00098:mRNA_32.2	C_unshiu_00098	207615	213748	Putative nuclear matrix constituent protein 1-like protein			KmG-04	7.092
Ov0316			-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43					JtR-05	31.749
Ov0317	Ov0316.2		-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516
Ov0318		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012779m	scaffold_6	19405285	19407278	C_unshiu_00273:mRNA_20.1	C_unshiu_00273	103250	105183	40S ribosomal protein S5
Ov0319			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein			KmG-032	19.158
Ov0320			-	-	-	-	-	-		Ciclev10005968m	scaffold_9	27640074	27641178	C_unshiu_00252:mRNA_13.1	C_unshiu_00252	89281	90198	21 kDa protein									RP-03	56.919
Ov0321			-	-	-	-	-	-		Ciclev10018918m	scaffold_3	42776479	42784038
Ov0322		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10003485m	scaffold_5	36398988	36399239	C_unshiu_00241:mRNA_9.1	C_unshiu_00241	39546	40639	Microsomal signal peptidase 12 kDa protein	AGI-09	50.810	KmG-09	42.179	JtR-09S	62.873			RP-09	70.369
Ov0323			-	-	-	-	-	-		Ciclev10005490m	scaffold_9	5549195	5553148
Ov0324		AAvailable marker	-	-	-	-	-	O		Ciclev10030198m	scaffold_8	22575845	22578398	C_unshiu_01619:mRNA_6.1	C_unshiu_01619	15139	24519	Hypothetical protein			KmG-08	23.615
Ov0325			-	-	-	-	-	-		Ciclev10016692m	scaffold_2	35180594	35182774	C_unshiu_00048:mRNA_54.1	C_unshiu_00048	359734	361893	SGS domain-containing protein							NAT-082	48.374
Ov0326			-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218
Ov0401		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10004762m	scaffold_9	28736008	28740315	No							KmG-08	58.635					SA-06
Ov0402			-	-	-	-	-	-		Ciclev10011849m	scaffold_6	9847502	9854667
Ov0403		AAvailable marker	O	-	-	-	O	O	SI136,SI298,SI325	Ciclev10016280m	scaffold_2	23891814	23893095	C_unshiu_00081:mRNA_50.1	C_unshiu_00081	296655	297936	Chlorophyll a/b binding protein	AGI-06	61.779	KmG-06	12.610	JtR-06S
Ov0404		AAvailable marker	-	-	-	-	-	O		Ciclev10002415m	scaffold_5	29768091	29769281	C_unshiu_00731:mRNA_6.3	C_unshiu_00731	26598	28767	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase			KmG-09	29.016	JtR-09S	31.495			RP-09	29.347
Ov0405			-	-	-	-	-	-		Ciclev10011509m	scaffold_6	18406856	18412391
Ov0406			-	-	-	-	-	-		Ciclev10025329m	scaffold_7	5159995	5165972
Ov0407		AAvailable marker	-	-	-	-	O	O		Ciclev10000563m	scaffold_5	37043417	37051080	C_unshiu_00773:mRNA_1.1	C_unshiu_00773	7888	15416	OSBP(Oxysterol binding protein)-related protein 1C isoform 3	AGI-09	46.097	KmG-09	48.606	JtR-09S	66.176			RP-09	76.027
Ov0408		AAvailable marker	-	-	-	-	-	O		Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_00248:mRNA_30.1	C_unshiu_00248	247183	248778	UDP-glycosyltransferase 71C4			KmG-04	50.902					RP-04	23.745
Ov0409			-	-	-	-	-	-		Ciclev10022219m	scaffold_3	4736047	4740432
Ov0410			-	-	-	-	-	-		Ciclev10001911m	scaffold_5	41005054	41009065
Ov0411			-	-	-	-	-	-		Ciclev10011259m	scaffold_6	23410636	23414246
Ov0412		OOthers	-	-	-	-	O	O	SI050,SI222	Ciclev10015053m	scaffold_2	31036088	31038222	C_unshiu_00143:mRNA_11.1	C_unshiu_00143	67475	69537	SEC14 cytosolic factor family protein	AGI-06	42.110	KmG-06	39.373	JtR-06S	15.372
Ov0413			-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like			KmG-07	34.263
Ov0414	Ov0413.2		-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065
Ov0415			-	-	-	-	-	-		Ciclev10007121m	scaffold_9	2339077	2341173
Ov0416			-	-	-	-	-	-		Ciclev10004279m	scaffold_9	24807948	24823388
Ov0417			-	-	-	-	-	-		Ciclev10007609m	scaffold_1	851900	857695
Ov0418			-	-	-	-	-	-		Ciclev10015900m	scaffold_2	11863906	11865549
Ov0419		AAvailable marker	-	-	-	-	-	O		Ciclev10011593m	scaffold_6	16709179	16712039	C_unshiu_00008:mRNA_31.2	C_unshiu_00008	178086	180944	Pyruvate decarboxylase									RP-04	11.143
Ov0420		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10019489m	scaffold_3	24840386	24845254	C_unshiu_00286:mRNA_25.1	C_unshiu_00286	176709	181573	Methylenetetrahydrofolate reductase (NAD(P)H)	AGI-05	41.306			JtR-05	41.208
Ov0421	Ov0420.2		-	-	-	-	-	-		Ciclev10019489m	scaffold_3	24840386	24845254
Ov0422		AAvailable marker	-	-	-	-	-	O		Ciclev10016314m	scaffold_2	11071587	11074479	C_unshiu_00184:mRNA_33.1	C_unshiu_00184	295953	298736	14-3-3-like protein GF14 mu									RP-06.1	28.576
Ov0423		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10023016m	scaffold_3	42954362	42955051	C_unshiu_00152:mRNA_28.1	C_unshiu_00152	189707	190632	Hypothetical protein	AGI-05	55.522
Ov0424			-	-	-	-	-	-		Ciclev10029115m	scaffold_8	23480483	23484398
Ov0425		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI051,SI291,SI351,SI371	Ciclev10015385m	scaffold_2	4021167	4024377	C_unshiu_00992:mRNA_13.1	C_unshiu_00992	79008	82132	DnaJ	AGI-07	41.317							RP-07	25.534
Ov0426	Ov0425.2		-	-	-	-	-	-		Ciclev10015385m	scaffold_2	4021167	4024377
Ov0427			-	-	-	-	-	-		Ciclev10009427m	scaffold_1	2156679	2158871	C_unshiu_00553:mRNA_14.1	C_unshiu_00553	110847	134434	Hypothetical protein			KmG-05S	36.268
Ov0428	Ov0427.2		-	-	-	-	-	-		Ciclev10009427m	scaffold_1	2156679	2158871
Ov0429	Ov0429.k		-	-	-	-	-	-		Ciclev10015338m	scaffold_2	290799	294122
Ov0501			-	-	-	-	-	-		Ciclev10019938m	scaffold_3	48089473	48091232	C_unshiu_00026:mRNA_86.1	C_unshiu_00026	712172	713868	Nepenthesin II									RP-05	61.026
Ov0502			-	-	-	-	-	-						C_unshiu_01254:mRNA_7.1	C_unshiu_01254	64349	65139	Hypothetical protein			KmG-04	62.093	JtR-04	3.789			RP-09
Ov0503		AtAvailable marker	O	-	-	-	-	O		Ciclev10020582m	scaffold_3	28382218	28386683	C_unshiu_00585:mRNA_5.1	C_unshiu_00585	31636	34824	60S ribosomal protein L5							NAT-05	19.042
Ov0504	Ov0503.2		-	-	-	-	-	-		Ciclev10020582m	scaffold_3	28382218	28386683
Ov0505		AAvailable marker	-	-	-	-	-	O		Ciclev10031252m	scaffold_4	16626338	16629094	C_unshiu_00250:mRNA_14.1	C_unshiu_00250	82573	84397	Tyrosine decarboxylase			KmG-07	53.887	JtR-07	48.672	NAT-07	3.814
Ov0506	Ov0505.2		-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0507		AAvailable marker	-	-	-	-	-	O		Ciclev10031860m	scaffold_4	642157	644823
Ov0508	Ov0507.2		-	-	-	-	-	-	SI322	Ciclev10031860m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	8.291			JtR-07	76.060
Ov0509		ULess informative for main cultivars	O	-	-	-	-	-						No					AGI-09	102.280							RP-09	21.445
Ov0510		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011175m	scaffold_6	10016564	10019369	C_unshiu_00279:mRNA_11.1	C_unshiu_00279	116848	119657	Phenylalanine ammonia-lyase 1			KmG-04	62.284	JtR-04	3.789
Ov0511			-	-	-	-	-	-		Ciclev10032764m	scaffold_4	6101482	6103243
Ov0512		OOthers	O	-	-	-	-	-		Ciclev10006241m	scaffold_9	27198508	27199642	C_unshiu_00433:mRNA_19.1	C_unshiu_00433	116730	118286	Small heat shock protein	AGI-03	40.361	KmG-032	25.743	JtR-031		NAT-03
Ov0513		OOthers	O	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00009:mRNA_59.1	C_unshiu_00009	325807	333424	Hypothetical protein	AGI-04	38.903	KmG-04	5.110					RP-04	60.491
Ov0514			-	-	-	-	-	-		Ciclev10004975m	scaffold_9	7436355	7440439
Ov0515			-	-	-	-	-	-		Ciclev10020337m	scaffold_3	14878427	14882285	C_unshiu_01955:mRNA_4.1	C_unshiu_01955	21970	26584	DUF760 family protein			KmG-01	40.558
Ov0516			-	-	-	-	-	-		Ciclev10020524m	scaffold_3	35332191	35335063
Ov0517			-	-	-	-	-	-
Ov0518			-	-	-	-	-	-		Ciclev10009133m	scaffold_1	17185032	17187893
Ov0519			-	-	-	-	-	-
Ov0520		OOthers	O	-	-	-	-	-		Ciclev10029053m	scaffold_8	4712393	4713689	C_unshiu_00438:mRNA_3.1	C_unshiu_00438	34343	35619	BURP domain-containing protein	AGI-08	33.144			JtR-08	26.748
Ov0521			-	-	-	-	-	-		Ciclev10003767m	scaffold_5	15168047	15173092
Ov0522			-	-	-	-	-	-		Ciclev10026806m	scaffold_7	20056475	20058190
Ov0523			-	-	-	-	-	-		Ciclev10011639m	scaffold_6	17762614	17767198
Ov0524			-	-	-	-	-	-		Ciclev10027930m	scaffold_8	24613597	24623540
Ov0525		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	C_unshiu_01875:mRNA_4.1	C_unshiu_01875	35983	39196	ADP/ATP translocase 1	AGI-06	91.522							SA-06	27.092
Ov0526		OOthers	-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218	C_unshiu_00201:mRNA_11.2	C_unshiu_00201	136005	138785	Aspartic proteinase nepenthesin-1			KmG-09		JtR-09S	0.758	NAT-09
Sd0001			-	-	-	-	-	-		Ciclev10013084m	scaffold_6	16344482	16346981
Sd0002			-	-	-	-	-	-
Sd0003			-	-	-	-	-	-		Ciclev10001661m	scaffold_5	7157125	7159270
Sd0004			-	-	-	-	-	-						C_unshiu_00810:mRNA_8.1	C_unshiu_00810	99220	102123	Myrcene synthase, chloroplastic	AGI-08	40.459
Sd0005			-	-	-	-	-	-		Ciclev10008384m	scaffold_1	2344790	2346942
Su0001			-	-	-	-	-	-		Ciclev10012726m	scaffold_6	16312840	16314254
Su0002			-	-	-	-	-	-		Ciclev10007245m	scaffold_1	23236312	23242718
Su0003			-	-	-	-	-	-		Ciclev10016063m	scaffold_2	10456899	10459385
Su0004			-	-	-	-	-	-		Ciclev10022825m	scaffold_3	5829459	5830556
Su0005			-	-	-	-	-	-
Su0008			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Tf0001.2		AAvailable marker	O	O	O	-	O	O		Ciclev10020248m	scaffold_3	8647529	8652282	C_unshiu_00580:mRNA_10.1	C_unshiu_00580	75118	81473	Transcription factor BIM1	AGI-05	41.893
Tf0002.2			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Tf0003.2		OOthers	O	-	-	-	-	-		Ciclev10002471m	scaffold_5	37808878	37811097	C_unshiu_00238:mRNA_14.1	C_unshiu_00238	116142	129209	Hypothetical protein	AGI-09	44.054
Tf0004			-	-	-	-	-	-	SI219,SI330	Ciclev10014045m	scaffold_2	33074821	33084014	C_unshiu_00153:mRNA_7.1	C_unshiu_00153	66406	75053	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2	AGI-06	32.312
Tf0005.2		AAvailable marker	O	-	-	-	-	O		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog
Tf0006			-	-	-	-	-	-		Ciclev10011540m	scaffold_6	18299497	18301431
Tf0007			-	-	-	-	-	-		Ciclev10018564m	scaffold_3	22721217	22725936
Tf0008			-	-	-	-	-	-		Ciclev10006582m	scaffold_9	29169157	29173419
Tf0009.2			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0010			-	-	-	-	-	-		Ciclev10021038m	scaffold_3	1054257	1056078	C_unshiu_00609:mRNA_18.1	C_unshiu_00609	77883	79313	Putative WRKY transcription factor 41	AGI-05
Tf0011.2		OOthers	O	-	-	-	-	-		Ciclev10018614m	scaffold_3	11078798	11089090	C_unshiu_02207:mRNA_3.1	C_unshiu_02207	9802	19021	Hypothetical protein	AGI-05	42.191
Tf0012		AAvailable marker	-	-	-	-	O	O		Ciclev10018673m	scaffold_3	37601493	37607586	C_unshiu_00502:mRNA_21.1	C_unshiu_00502	155419	162660	Protein NLP8	AGI-05	47.173
Tf0013		OOthers	O	O	O	-	O	O	SI161,SI362	Ciclev10027769m	scaffold_8	13408610	13413938	C_unshiu_01226:mRNA_1.1	C_unshiu_01226	20559	25720	DNA replication licensing factor MCM2	AGI-08	56.123
Tf0014.2			-	-	-	-	-	-		Ciclev10030185m	scaffold_8	24976315	24979483	C_unshiu_00271:mRNA_9.1	C_unshiu_00271	56325	61820	Transcription factor	AGI-08
Tf0015			-	-	-	-	-	-		Ciclev10021571m	scaffold_3	47956195	47957207
Tf0016			-	-	-	-	-	-	SI345	Ciclev10001979m	scaffold_5	39839984	39841860	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-09	42.158
Tf0017			-	-	-	-	-	-	SI285	Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor	AGI-05	28.617
Tf0018.2			-	-	-	-	-	-		Ciclev10015806m	scaffold_2	6900992	6905827
Tf0019			-	-	-	-	-	-	SI056,SI347	Ciclev10001255m	scaffold_5	41881297	41883386	C_unshiu_00009:mRNA_161.1	C_unshiu_00009	1049324	1051358	C2H2-like zinc finger protein	AGI-09	34.799
Tf0020			-	-	-	-	-	-	SI154	Ciclev10026414m	scaffold_7	2289455	2291216	C_unshiu_00025:mRNA_31.1	C_unshiu_00025	258446	260200	Homeobox leucine zipper protein	AGI-02	71.294
Tf0021		AAvailable marker	-	-	-	-	-	O		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein
Tf0022		MDisagree by Marco analysis	O	-	-	-	-	-	SI116	Ciclev10005681m	scaffold_9	31237089	31243866	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	78.631
Tf0023.2			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0024.2			-	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176
Tf0025.2			-	-	-	-	-	-		Ciclev10026197m	scaffold_7	4513037	4514995
Tf0026			O	-	-	-	-	-	SI111,SI288	Ciclev10025369m	scaffold_7	285299	292550	C_unshiu_00312:mRNA_28.1	C_unshiu_00312	151229	158232	Ubiquilin	AGI-02	78.531
Tf0027			-	-	-	-	-	-	SI046	Ciclev10026602m	scaffold_7	13911684	13912447	C_unshiu_00792:mRNA_11.1	C_unshiu_00792	92331	93069	Ethylene-responsive transcription factor ERF003	AGI-07	38.916
Tf0028			-	-	-	-	-	-	SI377	Ciclev10022572m	scaffold_3	19780711	19782241	C_unshiu_00443:mRNA_20.1	C_unshiu_00443	195567	202424	MADS-box transcription factor
Tf0029			-	-	-	-	-	-		Ciclev10027901m	scaffold_8	21887372	21893128	C_unshiu_00500:mRNA_16.1	C_unshiu_00500	147319	151840	Auxin response factor	AGI-08	27.318
Tf0030.2			-	-	-	-	-	-		Ciclev10027306m	scaffold_7	16108723	16113463
Tf0031.2			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0032		AAvailable marker	O	-	-	-	O	O		Ciclev10026014m	scaffold_7	94155	97631	C_unshiu_00706:mRNA_8.1	C_unshiu_00706	51525	54837	AT-hook motif nuclear-localized protein 10	AGI-02	78.531
Tf0033			-	-	-	-	-	-		Ciclev10008659m	scaffold_1	26872071	26875269
Tf0033.2			-	-	-	-	-	-		Ciclev10008659m	scaffold_1	26872071	26875269
Tf0034			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Tf0035			-	-	-	-	-	-		Ciclev10016461m	scaffold_2	29047758	29049298
Tf0036		AAvailable marker	O	-	-	-	O	O		Ciclev10022032m	scaffold_3	43850269	43852816	C_unshiu_01051:mRNA_11.1	C_unshiu_01051	94369	96339	Auxin-responsive protein IAA14	AGI-05	53.260
Tf0037			-	-	-	-	-	-		Ciclev10005726m	scaffold_9	8466200	8470081
Tf0038.2			-	-	-	-	-	-		Ciclev10004955m	scaffold_9	25922689	25932568
Tf0039			-	-	-	-	-	-		Ciclev10020926m	scaffold_3	40240644	40244399
Tf0040.2			-	-	-	-	-	-		Ciclev10002260m	scaffold_5	406520	410924
Tf0041			-	-	-	-	-	-		Ciclev10009354m	scaffold_1	20550792	20553673
Tf0042.2		AAvailable marker	O	-	-	-	-	O		Ciclev10016820m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein
Tf0043			-	-	-	-	-	-		Ciclev10032519m	scaffold_4	24820269	24824732	C_unshiu_00001:mRNA_295.1	C_unshiu_00001	1871301	1874281	Agamous-like MADS-box protein AGL15	AGI-07	84.593
Tf0044			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Tf0045			-	-	-	-	-	-	SI303,SI321	Ciclev10032837m	scaffold_4	23496020	23497466	C_unshiu_00001:mRNA_74.1	C_unshiu_00001	490607	491890	Homeobox transcription factor	AGI-07	74.573
Tf0046.2			-	-	-	-	-	-		Ciclev10026046m	scaffold_7	13308593	13311348
Tf0047			-	-	-	-	-	-		Ciclev10028908m	scaffold_8	1063711	1065289
Tf0048			-	-	-	-	-	-		Ciclev10020631m	scaffold_3	41955540	41957174
Tf0049			-	-	-	-	-	-	SI328	Ciclev10008919m	scaffold_1	24273993	24277800	C_unshiu_00047:mRNA_33.1	C_unshiu_00047	212549	221653	WD domain protein-like	AGI-01	26.841
Tf0050			-	-	-	-	-	-	SI104,SI346	Ciclev10012152m	scaffold_6	24874840	24876388	C_unshiu_00135:mRNA_12.1	C_unshiu_00135	84260	85810	Myb-related protein 306	AGI-04	36.106
Tf0051			-	-	-	-	-	-	SI027,SI214	Ciclev10021952m	scaffold_3	3964036	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43	AGI-05	25.590
Tf0052			-	-	-	-	-	-		Ciclev10015808m	scaffold_2	6901350	6905827
Tf0053			-	-	-	-	-	-	SI305	Ciclev10022321m	scaffold_3	29153425	29156189	C_unshiu_01169:mRNA_3.1	C_unshiu_01169	39141	41442	Peptide methionine sulfoxide reductase B5	AGI-05	42.265
Tf0054			O	-	-	-	-	-	SI238	Ciclev10000100m	scaffold_5	43108998	43114214	C_unshiu_01422:mRNA_2.1	C_unshiu_01422	15150	33598	Hypothetical protein	AGI-09	21.045
Tf0055.2			-	-	-	-	-	-		Ciclev10020053m	scaffold_3	50133837	50139049
Tf0056		AAvailable marker	O	-	-	-	O	O	SI061,SI137	Ciclev10012265m	scaffold_6	22305922	22308021	C_unshiu_00252:mRNA_6.1	C_unshiu_00252	48632	49537	Myb domain protein 42	AGI-04	49.225
Tf0057			-	-	-	-	-	-		Ciclev10000650m	scaffold_5	21243493	21247521
Tf0058			-	-	-	-	-	-	SI257	Ciclev10009065m	scaffold_1	20885102	20889283	C_unshiu_00395:mRNA_8.2	C_unshiu_00395	50978	54866	Fertilization-independent endosperm protein	AGI-01	46.623
Tf0059			-	-	-	-	-	-	SI101	Ciclev10007297m	scaffold_1	12883722	12897805	C_unshiu_00450:mRNA_3.1	C_unshiu_00450	36956	58462	AGC family Serine/Threonine kinase family protein	AGI-01	56.416
Tf0060			-	-	-	-	-	-		Ciclev10014642m	scaffold_2	35513796	35516719
Tf0061			-	-	-	-	-	-	SI150,SI186	Ciclev10001592m	scaffold_5	35159690	35164384	C_unshiu_00764:mRNA_4.1	C_unshiu_00764	30899	36628	Auxin-responsive protein IAA8	AGI-09	61.651
Tf0062		Bno homozygous cultivar with minor allele	O	-	-	O	-	-	SI223	Ciclev10012377m	scaffold_6	11826472	11830875	C_unshiu_00207:mRNA_24.2	C_unshiu_00207	252955	255240	Transcription factor ASG4	AGI-08	93.624
Tf0063			-	-	-	-	-	-		Ciclev10014617m	scaffold_2	8418789	8421898
Tf0064			-	-	-	-	-	-		Ciclev10005649m	scaffold_9	23409097	23411093
Tf0065			-	-	-	-	-	-	SI142	Ciclev10030696m	scaffold_4	13945795	13951313	C_unshiu_00357:mRNA_3.1	C_unshiu_00357	35189	39739	Auxin response factor	AGI-07	41.876
Tf0066			-	-	-	-	-	-	SI221	Ciclev10008812m	scaffold_1	18270818	18273015	C_unshiu_00187:mRNA_34.1	C_unshiu_00187	287391	289585	NAC domain-containing protein 72	AGI-01	58.420
Tf0067		OOthers	O	-	-	-	-	-	SI033,SI187	Ciclev10025950m	scaffold_7	8438702	8442381	C_unshiu_00290:mRNA_9.1	C_unshiu_00290	74194	77624	Transcription factor	AGI-02	5.104
Tf0068			-	-	-	-	-	-	SI106	Ciclev10020724m	scaffold_3	44141305	44144453	C_unshiu_00217:mRNA_25.1	C_unshiu_00217	201916	205032	Heat shock transcription factor A7a1	AGI-05	54.268
Tf0069			-	-	-	-	-	-	SI199	Ciclev10001715m	scaffold_5	38566192	38571337	C_unshiu_00183:mRNA_2.1	C_unshiu_00183	20134	26910	Transcription factor RF2b	AGI-09	42.789							RP-09	77.126
Tf0070		OOthers	O	-	-	-	-	-	SI277	Ciclev10002250m	scaffold_5	39748754	39753073	C_unshiu_01089:mRNA_6.1	C_unshiu_01089	22643	26826	Basic helix-loop-helix family protein	AGI-09	45.029
Tf0071			-	-	-	-	-	-	SI084,SI146	Ciclev10022102m	scaffold_3	26610747	26612959	C_unshiu_00167:mRNA_6.1	C_unshiu_00167	57300	62494	HAUS augmin-like complex subunit	AGI-03	46.274
Tf0072			-	-	-	-	-	-		Ciclev10005403m	scaffold_9	28757274	28759075	C_unshiu_00045:mRNA_48.1	C_unshiu_00045	372168	373811	Heat stress transcription factor B-4	AGI-03	35.962
Tf0073			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Tf0074			O	-	-	-	-	-		Ciclev10005366m	scaffold_9	28444512	28446074	C_unshiu_00045:mRNA_7.1	C_unshiu_00045	62608	63842	TCP family transcription factor	AGI-03	37.816
Tf0075			-	-	-	-	-	-	SI059,SI248	Ciclev10010972m	scaffold_6	19142307	19156510	C_unshiu_00089:mRNA_11.1	C_unshiu_00089	108874	122025	Homoserine kinase	AGI-04	66.455
Tf0076			-	-	-	-	-	-	SI266	Ciclev10031150m	scaffold_4	7200135	7204232	C_unshiu_00013:mRNA_63.3	C_unshiu_00013	459064	463137	NAC domain-containing protein 78	AGI-07	38.565
Tf0077			O	-	-	-	-	-	SI135	Ciclev10008135m	scaffold_1	28433972	28437921	C_unshiu_00590:mRNA_15.1	C_unshiu_00590	86430	90131	WRKY	AGI-01	34.814
Tf0078.2			-	-	-	-	-	-		Ciclev10020248m	scaffold_3	8647529	8652282
Tf0079		MDisagree by Marco analysis	O	-	-	O	-	-	SI270,SI294	Ciclev10021287m	scaffold_3	7047024	7049430	C_unshiu_00425:mRNA_7.1	C_unshiu_00425	35608	38027	Heat stress transcription factor B-4	AGI-05	45.092
Tf0080			-	-	-	-	-	-		Ciclev10011039m	scaffold_6	17611201	17617794
Tf0081			-	-	-	-	-	-	SI038,SI324	Ciclev10021980m	scaffold_3	38214468	38216861	C_unshiu_00575:mRNA_8.1	C_unshiu_00575	47693	51431	Leucine-rich repeat disease resistance protein-like	AGI-05	48.590
Tf0082.2			-	-	-	-	-	-		Ciclev10018963m	scaffold_3	47476188	47482822
Tf0083			-	-	-	-	-	-	SI129	Ciclev10021651m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Tf0084			-	-	-	-	-	-		Ciclev10000121m	scaffold_5	38288047	38296128	C_unshiu_00183:mRNA_40.1	C_unshiu_00183	305878	313881	Transcription elongation factor SPT5	AGI-09	44.096
Tf0085			-	-	-	-	-	-	SI094,SI211	Ciclev10012088m	scaffold_6	2067586	2073007	C_unshiu_00176:mRNA_13.1	C_unshiu_00176	89975	97731	Transcription factor-like protein DPB	AGI-08	96.807
Tf0086			-	-	-	-	-	-		Ciclev10018915m	scaffold_3	62157	67039
Tf0087			-	-	-	-	-	-	SI166,SI271,SI287	Ciclev10031120m	scaffold_4	11412331	11417624	C_unshiu_00019:mRNA_18.1	C_unshiu_00019	190344	195992	Two-component response regulator-like APRR2	AGI-07	35.897
Tf0088		MDisagree by Marco analysis	O	-	-	-	-	-	SI066	Ciclev10001291m	scaffold_5	41275201	41278829	C_unshiu_00127:mRNA_34.1	C_unshiu_00127	251592	254627	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1	AGI-09	35.763
Tf0089			-	-	-	-	-	-		Ciclev10020367m	scaffold_3	32895854	32900578
Tf0090		AAvailable marker	O	-	-	-	-	O		Ciclev10031135m	scaffold_4	16519046	16521918	C_unshiu_00086:mRNA_45.1	C_unshiu_00086	374812	377677	Transcription factor bHLH62
Tf0091			-	-	-	-	-	-		Ciclev10019140m	scaffold_3	1301192	1305787
Tf0092			-	-	-	-	-	-	SI099	Ciclev10007435m	scaffold_1	3285601	3291534	C_unshiu_00006:mRNA_60.1	C_unshiu_00006	496127	502071	Class III HD-Zip family protein
Tf0093.2		AAvailable marker	O	-	-	-	O	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4	AGI-09	86.512
Tf0094			-	-	-	-	-	-	SI006	Ciclev10031937m	scaffold_4	23957038	23959134	C_unshiu_00001:mRNA_145.1	C_unshiu_00001	950657	954895	Myb family transcription factor APL	AGI-07	77.141
Tf0095			O	-	-	-	-	-		Ciclev10016229m	scaffold_2	34412152	34415059
Tf0096			O	-	-	-	-	-		Ciclev10028804m	scaffold_8	21369373	21370728	C_unshiu_00784:mRNA_1.1	C_unshiu_00784	297	1652	Transcription factor RAX3	AGI-08	34.042
Tf0097			-	-	-	-	-	-		Ciclev10005329m	scaffold_9	13039313	13041944
Tf0098.2			-	-	-	-	-	-		Ciclev10001945m	scaffold_5	36550507	36552800
Tf0099.2			-	-	-	-	-	-		Ciclev10019949m	scaffold_3	7286661	7290182
Tf0100			-	-	-	-	-	-		Ciclev10031899m	scaffold_4	22912615	22914628
Tf0101			-	-	-	-	-	-		Ciclev10015215m	scaffold_2	23163673	23168238
Tf0102			-	-	-	-	-	-		Ciclev10008813m	scaffold_1	734373	736031
Tf0103			-	-	-	-	-	-		Ciclev10002094m	scaffold_5	354416	357301	C_unshiu_01920:mRNA_2.1	C_unshiu_01920	10140	12134	Putative NAC domain-containing protein 94	AGI-09	93.685
Tf0104			-	-	-	-	-	-		Ciclev10011554m	scaffold_6	21450811	21454133
Tf0105			-	-	-	-	-	-		Ciclev10030696m	scaffold_4	13945795	13951313
Tf0106			-	-	-	-	-	-		Ciclev10006161m	scaffold_9	1128046	1129318	C_unshiu_00007:mRNA_6.1	C_unshiu_00007	49599	50702	GATA transcription factor 15	AGI-03	7.674
Tf0107			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723
Tf0108			-	-	-	-	-	-		Ciclev10021923m	scaffold_3	6828481	6829499
Tf0109.2			-	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243
Tf0110			-	-	-	-	-	-		Ciclev10019339m	scaffold_3	48063483	48066386
Tf0111			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Tf0112			O	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325	C_unshiu_00225:mRNA_9.1	C_unshiu_00225	37090	44898	Regulation of nuclear pre-mRNA domain-containing protein 1B	AGI-07	43.014
Tf0113			-	-	-	-	-	-		Ciclev10001251m	scaffold_5	38695747	38699629
Tf0114			-	-	-	-	-	-		Ciclev10015049m	scaffold_2	23826323	23829613
Tf0115			-	-	-	-	-	-		Ciclev10020967m	scaffold_3	7197712	7199779
Tf0116			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0117			-	-	-	-	-	-		Ciclev10005596m	scaffold_9	15107375	15113804	C_unshiu_00170:mRNA_11.1	C_unshiu_00170	91205	97326	Myb family transcription factor APL	AGI-03	46.274
Tf0118			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Tf0119		AAvailable marker	-	-	-	-	O	O		Ciclev10014416m	scaffold_2	35564238	35570619	C_unshiu_01497:mRNA_5.1	C_unshiu_01497	20297	33375	Hypothetical protein	AGI-06	19.002
Tf0120			-	-	-	-	-	-		Ciclev10024826m	scaffold_7	3376826	3385936
Tf0121			-	-	-	-	-	-		Ciclev10005787m	scaffold_9	13223034	13225922
Tf0122			-	-	-	-	-	-		Ciclev10020009m	scaffold_3	24620623	24627357	C_unshiu_02869:mRNA_1.1	C_unshiu_02869	1885	10204	Hypothetical protein	AGI-05	41.306
Tf0123			-	-	-	-	-	-		Ciclev10001914m	scaffold_5	41555118	41556812
Tf0124			-	-	-	-	-	-		Ciclev10007717m	scaffold_1	27457358	27462893	C_unshiu_00237:mRNA_37.1	C_unshiu_00237	259818	273281	Dethiobiotin synthase	AGI-01	34.062
Tf0125			-	-	-	-	-	-		Ciclev10025501m	scaffold_7	16249523	16255343	C_unshiu_01042:mRNA_11.1	C_unshiu_01042	86577	91963	Ubiquitin-specific protease family C19 protein	AGI-02	21.337
Tf0126			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0127			-	-	-	-	-	-		Ciclev10023918m	scaffold_3	1084467	1086978
Tf0128.2			-	-	-	-	-	-		Ciclev10023354m	scaffold_3	19936499	19941380
Tf0129			-	-	-	-	-	-		Ciclev10029032m	scaffold_8	19288177	19290093
Tf0130			-	-	-	-	-	-		Ciclev10001027m	scaffold_5	19740133	19745806	C_unshiu_00050:mRNA_15.1	C_unshiu_00050	195528	200204	Transcription factor GAMYB	AGI-09	103.217
Tf0131.2			-	-	-	-	-	-		Ciclev10000622m	scaffold_5	35548959	35554067
Tf0132			-	-	-	-	-	-		Ciclev10026056m	scaffold_7	3429964	3433239
Tf0133.2			-	-	-	-	-	-		Ciclev10018575m	scaffold_3	33349690	33357142
Tf0134			-	-	-	-	-	-		Ciclev10015364m	scaffold_2	24667102	24672331
Tf0135			-	-	-	-	-	-		Ciclev10019781m	scaffold_3	13977377	13980070
Tf0136			-	-	-	-	-	-		Ciclev10011338m	scaffold_6	21028837	21031557
Tf0137			-	-	-	-	-	-		Ciclev10018849m	scaffold_3	46482149	46489836
Tf0138			-	-	-	-	-	-		Ciclev10003996m	scaffold_5	27123826	27127430
Tf0139			-	-	-	-	-	-		Ciclev10026199m	scaffold_7	224443	227133
Tf0140			-	-	-	-	-	-		Ciclev10004457m	scaffold_9	225971	232459	C_unshiu_00007:mRNA_144.1	C_unshiu_00007	929895	935477	Squamosa promoter-binding-like protein 1	AGI-03	9.830
Tf0141			-	-	-	-	-	-		Ciclev10019130m	scaffold_3	1593979	1598159
Tf0142			-	-	-	-	-	-		Ciclev10012377m	scaffold_6	11826472	11830875
Tf0143			-	-	-	-	-	-	SI127	Ciclev10004758m	scaffold_9	30040457	30044615	C_unshiu_00134:mRNA_22.1	C_unshiu_00134	203848	206784	Sigma factor	AGI-03	68.846
Tf0144			-	-	-	-	-	-	SI125,SI189,SI192	Ciclev10028782m	scaffold_8	8009000	8012045	C_unshiu_00682:mRNA_12.1	C_unshiu_00682	86334	89311	Transcription factor bHLH121	AGI-08	56.439
Tf0145			-	-	-	-	-	-	SI092	Ciclev10022479m	scaffold_3	8486491	8488997	C_unshiu_00154:mRNA_7.1	C_unshiu_00154	49131	60112	Floral homeotic protein APETALA 1
Tf0146		OOthers	-	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265
Tf0147			-	-	-	-	-	-		Ciclev10001956m	scaffold_5	15764937	15766976	C_unshiu_00293:mRNA_8.1	C_unshiu_00293	104196	105925	NAC transcription factor	AGI-02	22.436
Tf0148		AAvailable marker	O	-	-	-	O	O	SI119	Ciclev10032816m	scaffold_4	20998708	21001535	C_unshiu_00010:mRNA_116.1	C_unshiu_00010	869802	872410	Putative WRKY transcription factor 75	AGI-07	64.812
Tf0149		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI128,SI269	Ciclev10002290m	scaffold_5	29400846	29403554	C_unshiu_00110:mRNA_26.1	C_unshiu_00110	160409	163111	Auxin-responsive protein IAA16	AGI-09	85.976							RP-09	32.826
Tf0150		AAvailable marker	O	O	-	O	O	O	SI262	Ciclev10028292m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0151		AAvailable marker	O	-	-	-	O	O	SI159,SI281	Ciclev10002917m	scaffold_5	35357333	35359897	No					AGI-09	60.528							RP-09	41.892
Tf0152		AAvailable marker	O	-	-	-	O	O		Ciclev10021000m	scaffold_3	2002427	2008126	C_unshiu_01105:mRNA_2.1	C_unshiu_01105	3681	8106	AT-hook motif nuclear localized protein 1	AGI-05	8.506
Tf0153		AAvailable marker	O	-	-	-	O	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta	AGI-05	41.267
Tf0154		AAvailable marker	O	-	-	-	-	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta
Tf0155			-	-	-	-	-	-		Ciclev10028860m	scaffold_8	6474195	6475882
Tf0156			-	-	-	-	-	-		Ciclev10031622m	scaffold_4	25027357	25030551
Tf0158			-	-	-	-	-	-		Ciclev10019607m	scaffold_3	4883124	4889593
Tf0159			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0160			-	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023
Tf0161			-	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305
Tf0163		AAvailable marker	O	-	-	-	O	O		Ciclev10010423m	scaffold_1	26740822	26744016	C_unshiu_00105:mRNA_35.1	C_unshiu_00105	316978	320206	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1	AGI-01	31.240
Tf0165		AAvailable marker	O	-	-	-	O	O		Ciclev10031793m	scaffold_4	19605473	19608059	C_unshiu_00099:mRNA_19.1	C_unshiu_00099	154500	156794	Two-component response regulator ARR18	AGI-07	55.503
Tf0166			-	-	-	-	-	-	SI156	Ciclev10000524m	scaffold_5	19682579	19686163	C_unshiu_00050:mRNA_13.1	C_unshiu_00050	140837	153470	Hypothetical protein	AGI-09	101.351
Tf0167			-	-	-	-	-	-	SI230,SI241,SI247	Ciclev10030998m	scaffold_4	17143350	17147918	C_unshiu_00478:mRNA_2.1	C_unshiu_00478	19232	27824	Sigma factor	AGI-07	46.244
Tf0168		AAvailable marker	O	O	-	O	O	O	SI175	Ciclev10007563m	scaffold_1	24898769	24905716	C_unshiu_00341:mRNA_22.1	C_unshiu_00341	170777	178753	AT-rich interactive domain-containing protein 4	AGI-01	25.752
Tf0169			-	-	-	-	-	-		Ciclev10004115m	scaffold_9	2284484	2302268
Tf0170			-	-	-	-	-	-		Ciclev10005681m	scaffold_9	31237089	31243866
Tf0171			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0172			O	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176	C_unshiu_00496:mRNA_5.1	C_unshiu_00496	48069	50951	Auxin-induced protein IAA6	AGI-02	10.638
Tf0173			O	-	-	-	-	-		Ciclev10015413m	scaffold_2	26097343	26099320	C_unshiu_00259:mRNA_35.1	C_unshiu_00259	219790	227265	Hypothetical protein									RP-06.1	28.110
Tf0175			-	-	-	-	-	-		Ciclev10010825m	scaffold_1	5054551	5056146
Tf0176			-	-	-	-	-	-		Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein									RP-01
Tf0177			-	-	-	-	-	-	SI133	Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein
Tf0178			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Tf0181			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Tf0183			-	-	-	-	-	-		Ciclev10021488m	scaffold_3	30873886	30877367
Tf0184		AAvailable marker	O	-	-	-	O	O		Ciclev10019968m	scaffold_3	45393857	45398298	C_unshiu_00546:mRNA_8.1	C_unshiu_00546	75023	78260	Zinc finger CCCH domain-containing protein 3	AGI-05	57.948
Tf0185			O	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Tf0186			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Tf0187			-	-	-	-	-	-		Ciclev10013228m	scaffold_6	1950121	1950908
Tf0188			-	-	-	-	-	-		Ciclev10012285m	scaffold_6	15774976	15777653
Tf0189			-	-	-	-	-	-		Ciclev10001738m	scaffold_5	21379384	21385293
Tf0191			-	-	-	-	-	-		Ciclev10015847m	scaffold_2	5821401	5825173
Tf0193			-	-	-	-	-	-		Ciclev10007849m	scaffold_1	27167271	27171073
Tf0194			-	-	-	-	-	-		Ciclev10018639m	scaffold_3	42996886	43001548
Tf0195		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10030351m	scaffold_8	67997	74191	C_unshiu_01137:mRNA_4.1	C_unshiu_01137	30837	36569	AT-rich interactive domain-containing protein 3	AGI-08	87.683
Tf0196			-	-	-	-	-	-		Ciclev10025815m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein	AGI-02	4.033
Tf0197			-	-	-	-	-	-		Ciclev10012447m	scaffold_6	14804828	14808139
Tf0198		AAvailable marker	O	-	-	-	-	O		Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7
Tf0199			-	-	-	-	-	-	SI023,SI157	Ciclev10000697m	scaffold_5	30994812	30999834	C_unshiu_00422:mRNA_12.1	C_unshiu_00422	116754	121159	Serine/threonine-protein kinase isoform 2
Tf0200			O	-	-	-	-	-		Ciclev10030297m	scaffold_8	21095569	21102194
Tf0201			O	-	-	-	-	-	SI195	Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1
Tf0202			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Tf0203			-	-	-	-	-	-	SI121	Ciclev10014039m	scaffold_2	10459593	10472483	C_unshiu_00403:mRNA_13.1	C_unshiu_00403	88988	102135	Homeodomain transcriptional regulator
Tf0204			-	-	-	-	-	-		Ciclev10027848m	scaffold_8	23589702	23593390
Tf0205		OOthers	O	-	-	-	-	-	SI274	Ciclev10005062m	scaffold_9	16383851	16393557	C_unshiu_00094:mRNA_29.1	C_unshiu_00094	262934	272307	UBX domain-containing protein 1	AGI-03	46.274
Tf0206			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Tf0207			-	-	-	-	-	-		Ciclev10014026m	scaffold_2	9008920	9021876
Tf0208			-	-	-	-	-	-	SI181	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein
Tf0209			-	-	-	-	-	-		Ciclev10015591m	scaffold_2	35642412	35646764
Tf0210			-	-	-	-	-	-	SI183	Ciclev10004533m	scaffold_9	11993282	11999324	C_unshiu_00926:mRNA_13.1	C_unshiu_00926	108384	111875	Zinc finger protein NUTCRACKER	AGI-08	56.724
Tf0211			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Tf0212			-	-	-	-	-	-	SI196	Ciclev10030538m	scaffold_4	19816800	19825304	C_unshiu_00535:mRNA_20.1	C_unshiu_00535	166525	174142	Putative nuclear matrix constituent protein 1-like protein	AGI-07	56.586
Tf0213		OOthers	O	-	-	-	-	-		Ciclev10030571m	scaffold_4	18839546	18848948	C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative	AGI-07	48.581
Tf0214			-	-	-	-	-	-	SI020	Ciclev10020053m	scaffold_3	50133837	50139049	C_unshiu_00014:mRNA_67.1	C_unshiu_00014	458017	462942	Transcription factor UNE10
Tf0215			-	-	-	-	-	-		Ciclev10001099m	scaffold_5	43036925	43044008
Tf0216			-	-	-	-	-	-		Ciclev10002569m	scaffold_5	29413143	29414562
Tf0217			-	-	-	-	-	-		Ciclev10001508m	scaffold_5	34910794	34916593
Tf0218			-	-	-	-	-	-		Ciclev10014499m	scaffold_2	31489811	31497594
Tf0219		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI076,SI267	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	49.250
Tf0220			-	-	-	-	-	-		Ciclev10013334m	scaffold_6	23657256	23657810
Tf0221			-	-	-	-	-	-	SI057,SI225	Ciclev10025996m	scaffold_7	490750	492882	C_unshiu_00488:mRNA_7.1	C_unshiu_00488	44813	48259	Ankyrin repeat domain-containing protein, chloroplastic	AGI-02	81.212
Tf0222			-	-	-	-	-	-		Ciclev10008882m	scaffold_1	28782169	28786731
Tf0223			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0224		OOthers	O	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808	C_unshiu_00104:mRNA_54.1	C_unshiu_00104	400959	412354	Zinc finger CCCH domain-containing protein 32	AGI-04	99.859
Tf0225			-	-	-	-	-	-		Ciclev10015893m	scaffold_2	36211961	36216858
Tf0226		AAvailable marker	O	-	-	-	-	O		Ciclev10008836m	scaffold_1	526813	529150	C_unshiu_00129:mRNA_32.1	C_unshiu_00129	303106	311407	Exocyst subunit EXO70 family protein									RP-01	1.100
Tf0227		AAvailable marker	O	-	-	-	O	O		Ciclev10031750m	scaffold_4	21666061	21671693	C_unshiu_00010:mRNA_30.1	C_unshiu_00010	183508	188843	Trihelix transcription factor GT-1	AGI-08	35.927
Tf0228			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497
Tf0229			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0230			-	-	-	-	-	-	SI140	Ciclev10008206m	scaffold_1	23463843	23470911	C_unshiu_00338:mRNA_22.1	C_unshiu_00338	163174	169978	NAD-dependent protein deacetylase SRT1
Tf0231			-	-	-	-	-	-		Ciclev10026262m	scaffold_7	6760311	6763833
Tf0232			-	-	-	-	-	-	SI258,SI261	Ciclev10001105m	scaffold_5	37066208	37070717	C_unshiu_00773:mRNA_3.1	C_unshiu_00773	31351	35269	Histone-lysine N-methyltransferase ASHR1
Tf0233			-	-	-	-	-	-		Ciclev10008804m	scaffold_1	6772264	6775904
Tf0234			-	-	-	-	-	-		Ciclev10005012m	scaffold_9	23476661	23480861
Tf0235		MDisagree by Marco analysis	O	-	-	O	-	-		Ciclev10030472m	scaffold_4	17057658	17074755	C_unshiu_00225:mRNA_13.1	C_unshiu_00225	75706	96678	TATA-binding protein-associated factor 172	AGI-07	43.879
Tf0236			-	-	-	-	-	-		Ciclev10000034m	scaffold_5	38595158	38602400
Tf0237			-	-	-	-	-	-		Ciclev10004502m	scaffold_9	29392885	29395387
Tf0238			-	-	-	-	-	-	SI114	Ciclev10026387m	scaffold_7	551893	553909	C_unshiu_01559:mRNA_5.1	C_unshiu_01559	24035	34006	Receptor-like protein kinase THESEUS 1
Tf0240			-	-	-	-	-	-	SI184	Ciclev10018505m	scaffold_3	42718991	42733040	C_unshiu_00386:mRNA_19.1	C_unshiu_00386	164396	178993	Myosin 2
Tf0241		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10027798m	scaffold_8	22106872	22114471	C_unshiu_00481:mRNA_18.1	C_unshiu_00481	121975	128680	Zinc finger CCCH domain-containing protein 24	AGI-08	27.618
Tf0242			-	-	-	-	-	-		Ciclev10002528m	scaffold_5	33921984	33926087
Tf0243			-	-	-	-	-	-	SI231	Ciclev10032893m	scaffold_4	3636667	3641089	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8
Tf0244			-	-	-	-	-	-		Ciclev10001847m	scaffold_5	35674416	35675935
Tf0245			-	-	-	-	-	-	SI021	Ciclev10008628m	scaffold_1	18298599	18300295	C_unshiu_00548:mRNA_21.1	C_unshiu_00548	168151	169460	Hypothetical protein
Tf0246			-	-	-	-	-	-		Ciclev10029834m	scaffold_8	5718913	5719431
Tf0247			-	-	-	-	-	-		Ciclev10009354m	scaffold_1	20550792	20553673
Tf0248			-	-	-	-	-	-		Ciclev10030929m	scaffold_4	15216527	15221460
Tf0249			-	-	-	-	-	-		Ciclev10023300m	scaffold_3	45793877	45798206
Tf0250		AAvailable marker	O	-	-	-	O	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A	AGI-08	73.105
Tf0251			-	-	-	-	-	-	SI005					C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative
Tf0252			-	-	-	-	-	-		Ciclev10002005m	scaffold_5	43068093	43070554
Tf0253			-	-	-	-	-	-		Ciclev10016685m	scaffold_2	31420457	31425299
Tf0254		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10010885m	scaffold_6	23916876	23939827	C_unshiu_00253:mRNA_3.1	C_unshiu_00253	14647	20586	Hypothetical protein	AGI-04	38.226
Tf0255			-	-	-	-	-	-		Ciclev10009486m	scaffold_1	22111808	22116666
Tf0256		AtAvailable marker	O	-	-	-	O	O		Ciclev10021699m	scaffold_3	43420187	43422432	C_unshiu_00411:mRNA_13.1	C_unshiu_00411	116444	118424	Myb-related protein Myb4	AGI-05	52.314
Tf0257			-	-	-	-	-	-	SI049	Ciclev10019816m	scaffold_3	43654587	43656842	C_unshiu_00805:mRNA_2.1	C_unshiu_00805	5667	6759	Transcription factor bHLH3
Tf0258			-	-	-	-	-	-	SI234	Ciclev10000508m	scaffold_5	41372513	41377106	C_unshiu_00127:mRNA_21.1	C_unshiu_00127	163658	166645	BEL1-like homeodomain protein 6
Tf0259		AAvailable marker	O	-	-	-	O	O		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-02	67.666
Tf0260			-	-	-	-	-	-		Ciclev10026457m	scaffold_7	5173846	5179864
Tf0261			-	-	-	-	-	-		Ciclev10012615m	scaffold_6	16418285	16421471
Tf0262			-	-	-	-	-	-		Ciclev10021374m	scaffold_3	5318874	5321054
Tf0263			-	-	-	-	-	-	SI013	Ciclev10008768m	scaffold_1	6358030	6359568	C_unshiu_00075:mRNA_22.1	C_unshiu_00075	227733	229211	Heat shock transcription factor A7a1
Tf0264		AAvailable marker	O	-	-	-	O	O		Ciclev10015873m	scaffold_2	248256	250675	C_unshiu_00109:mRNA_29.1	C_unshiu_00109	175776	179005	GAN	AGI-06	103.728
Tf0265			-	-	-	-	-	-	SI197	Ciclev10019232m	scaffold_3	49318106	49324231	C_unshiu_00018:mRNA_126.1	C_unshiu_00018	839780	845037	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0266			-	-	-	-	-	-		Ciclev10030510m	scaffold_4	18456751	18473188
Tf0267		AAvailable marker	O	-	-	-	O	O		Ciclev10031834m	scaffold_4	12571526	12575185	C_unshiu_00847:mRNA_8.1	C_unshiu_00847	48651	52296	Squamosa promoter-binding-like protein 13	AGI-07	37.800
Tf0268		AAvailable marker	O	-	-	-	O	O		Ciclev10021157m	scaffold_3	10140904	10142752	C_unshiu_00149:mRNA_29.1	C_unshiu_00149	326478	328059	Transcription factor MYB21	AGI-05	43.800
Tf0269			-	-	-	-	-	-		Ciclev10025970m	scaffold_7	2274068	2279911
Tf0270			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0271		Bno homozygous cultivar with minor allele	O	O	-	O	-	-		Ciclev10010976m	scaffold_6	11707953	11715646	C_unshiu_01619:mRNA_7.1	C_unshiu_01619	42347	50640	CCR4-NOT transcription complex subunit 4	AGI-08	95.613
Tf0273			-	-	-	-	-	-		Ciclev10015710m	scaffold_2	33593642	33595988
Tf0274			-	-	-	-	-	-		Ciclev10008979m	scaffold_1	24354877	24358736
Tf0275		AAvailable marker	O	-	-	-	O	O		Ciclev10006256m	scaffold_9	955176	957425	C_unshiu_00249:mRNA_31.1	C_unshiu_00249	191274	194861	Transposon protein, putative, Mutator sub-class	AGI-03	11.501
Tf0276			-	-	-	-	-	-		Ciclev10004999m	scaffold_9	1169260	1172055
Tf0277		OOthers	O	-	-	-	-	-		Ciclev10019282m	scaffold_3	181596	185335
Tf0278			-	-	-	-	-	-		Ciclev10021157m	scaffold_3	10140904	10142752
Tf0279			-	-	-	-	-	-	SI073	Ciclev10019219m	scaffold_3	49031441	49035202	C_unshiu_00018:mRNA_78.1	C_unshiu_00018	562898	566588	Putative anthocyanin regulator	AGI-05	80.539
Tf0280			-	-	-	-	-	-	SI158,SI200	Ciclev10025566m	scaffold_7	3429964	3433239	C_unshiu_00301:mRNA_24.3	C_unshiu_00301	159835	163045	Floral homeotic protein APETALA 2	AGI-05	54.268
Tf0281			-	-	-	-	-	-		Ciclev10000850m	scaffold_5	39495951	39498826
Tf0282			-	-	-	-	-	-		Ciclev10021334m	scaffold_3	6654997	6660313
Tf0284			-	-	-	-	-	-
Tf0285			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Tf0286		DDominant marker	O	-	-	-	-	-		Ciclev10011556m	scaffold_6	25001586	25004619	C_unshiu_01279:mRNA_6.1	C_unshiu_01279	43222	46082	Dof zinc finger protein DOF5.2	AGI-04	32.710
Tf0287			-	-	-	-	-	-		Ciclev10001639m	scaffold_5	38186495	38189379
Tf0289			-	-	-	-	-	-	SI207	Ciclev10020486m	scaffold_3	915818	919213	C_unshiu_01070:mRNA_6.1	C_unshiu_01070	43545	46732	Putative E3 ubiquitin-protein ligase UBR7
Tf0290		AAvailable marker	O	-	-	-	O	O		Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2	AGI-08	57.802
Tf0291			-	-	-	-	-	-		Ciclev10008882m	scaffold_1	28782169	28786731
Tf0292		OOthers	O	-	-	-	-	-		Ciclev10006112m	scaffold_9	31139789	31143240	C_unshiu_00003:mRNA_98.2	C_unshiu_00003	698480	711976	Protein strawberry notch	AGI-03	77.793
Tf0293		AAvailable marker	O	O	O	-	-	O		Ciclev10019219m	scaffold_3	49031441	49035202	C_unshiu_00018:mRNA_78.1	C_unshiu_00018	562898	566588	Putative anthocyanin regulator
Tf0294		AAvailable marker	O	-	-	-	O	O		Ciclev10021365m	scaffold_3	4794701	4799518	C_unshiu_00135:mRNA_58.2	C_unshiu_00135	398519	403121	Ureidoglycine aminohydrolase isoform 1	AGI-05	27.135
Tf0295			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782
Tf0296			-	-	-	-	-	-		Ciclev10005872m	scaffold_9	5305586	5310022
Tf0297			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0299			-	-	-	-	-	-		Ciclev10028534m	scaffold_8	1316879	1320611
Tf0300		AAvailable marker	O	O	-	-	O	O		Ciclev10022370m	scaffold_3	43862440	43863744	C_unshiu_01051:mRNA_10.1	C_unshiu_01051	83417	84406	Auxin-induced protein IAA4	AGI-05	54.726
Tf0301			-	-	-	-	-	-	SI182	Ciclev10021374m	scaffold_3	5318874	5321054	C_unshiu_00442:mRNA_14.1	C_unshiu_00442	123398	125451	Homeobox-leucine zipper protein HAT3
Tf0302			-	-	-	-	-	-	SI105	Ciclev10020754m	scaffold_3	41769833	41772129	No
Tf0303			-	-	-	-	-	-	SI082	Ciclev10030491m	scaffold_4	6325180	6334300	C_unshiu_00210:mRNA_10.1	C_unshiu_00210	52148	60690	Putative lysine-specific demethylase ELF6
Tf0304			-	-	-	-	-	-		Ciclev10000491m	scaffold_5	953167	960232	C_unshiu_00033:mRNA_32.1	C_unshiu_00033	311804	317751	Auxin response factor	AGI-09	113.306
Tf0305			-	-	-	-	-	-		Ciclev10008366m	scaffold_1	27554897	27556656
Tf0306			-	-	-	-	-	-		Ciclev10005750m	scaffold_9	26053930	26055086
Tf0307		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10009286m	scaffold_1	25395688	25397278	C_unshiu_00442:mRNA_24.1	C_unshiu_00442	209015	209831	Myb domain protein 5	AGI-01	23.266
Tf0308			-	-	-	-	-	-		Ciclev10028926m	scaffold_8	1993659	1996827
Tf0309			-	-	-	-	-	-	SI190	Ciclev10020466m	scaffold_3	45314016	45316651	C_unshiu_00546:mRNA_23.1	C_unshiu_00546	158416	160829	TLP domain class transcription factor	AGI-05	57.948
Tf0310			-	-	-	-	-	-		Ciclev10031598m	scaffold_4	19681884	19685929	C_unshiu_00099:mRNA_27.1	C_unshiu_00099	233334	237357	NAC domain-containing protein 8	AGI-07	54.869
Tf0311		AAvailable marker	O	-	-	-	O	O		Ciclev10011596m	scaffold_6	15932016	15936176	C_unshiu_00779:mRNA_8.1	C_unshiu_00779	78105	81377	Auxin transporter-like protein 2	AGI-08	91.890
Tf0312			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0313			-	-	-	-	-	-		Ciclev10032572m	scaffold_4	20533474	20543182
Tf0314			-	-	-	-	-	-		Ciclev10012525m	scaffold_6	21263744	21265650
Tf0315		AAvailable marker	O	-	-	-	O	O		Ciclev10012089m	scaffold_6	14087181	14090115	C_unshiu_00287:mRNA_20.1	C_unshiu_00287	221944	222997	Phantastica	AGI-08	93.657
Tf0316			-	-	-	-	-	-		Ciclev10028732m	scaffold_8	3894266	3897671
Tf0317			-	-	-	-	-	-	SI145	Ciclev10021941m	scaffold_3	2106810	2109266	C_unshiu_00490:mRNA_19.1	C_unshiu_00490	159122	161521	Transcription factor bHLH47
Tf0318		AAvailable marker	O	O	O	-	O	O		Ciclev10031873m	scaffold_4	13751433	13754767	C_unshiu_00240:mRNA_28.2	C_unshiu_00240	282002	285335	Transcription factor bHLH137	AGI-07	37.467
Tf0319			-	-	-	-	-	-	SI152	Ciclev10026319m	scaffold_7	6872666	6877291	C_unshiu_00166:mRNA_10.1	C_unshiu_00166	78780	83374	Putative PHD finger protein ALFIN-LIKE 4-like	AGI-02	44.258
Tf0320			-	-	-	-	-	-	SI203	Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	45.716
Tf0321			-	-	-	-	-	-	SI003	Ciclev10032283m	scaffold_4	24341642	24346244	C_unshiu_00001:mRNA_213.1	C_unshiu_00001	1358115	1363266	Putative WRKY transcription factor 57
Tf0322			-	-	-	-	-	-		Ciclev10002191m	scaffold_5	32699553	32702689
Tf0323			-	-	-	-	-	-	SI030	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Tf0324			-	-	-	-	-	-		Ciclev10002438m	scaffold_5	39986260	39987337
Tf0325		OOthers	O	-	-	-	-	-		Ciclev10029355m	scaffold_8	6700441	6703748	C_unshiu_02974:mRNA_2.1	C_unshiu_02974	10142	13418	B-box type zinc finger family protein	AGI-08	57.386
Tf0326		AAvailable marker	O	O	-	O	O	O	SI085	Ciclev10024695m	scaffold_7	2501520	2509737	C_unshiu_02417:mRNA_1.1	C_unshiu_02417	3692	11684	Histone-lysine N-methyltransferase SUVR5	AGI-02	69.928
Tf0327			-	-	-	-	-	-		Ciclev10009213m	scaffold_1	19056291	19058412
Tf0328			-	-	-	-	-	-	SI039,SI180	Ciclev10021606m	scaffold_3	2530708	2533942	C_unshiu_00509:mRNA_27.1	C_unshiu_00509	178211	181426	Transcription factor bHLH79
Tf0330			-	-	-	-	-	-	SI064,SI139	Ciclev10014811m	scaffold_2	35970577	35973973	C_unshiu_00077:mRNA_15.2	C_unshiu_00077	102078	105358	Scarecrow-like transcription factor PAT1	AGI-06	13.470
Tf0331			-	-	-	-	-	-		Ciclev10021868m	scaffold_3	4831751	4834270
Tf0332			-	-	-	-	-	-	SI081	Ciclev10001976m	scaffold_5	37586834	37589255	C_unshiu_00985:mRNA_11.1	C_unshiu_00985	97712	99966	NAC domain-containing protein 2	AGI-09	45.548
Tf0333			-	-	-	-	-	-		Ciclev10012193m	scaffold_6	5886744	5892919
Tf0334			-	-	-	-	-	-	SI034	Ciclev10007003m	scaffold_9	30983347	30984159	C_unshiu_00003:mRNA_76.2	C_unshiu_00003	557862	561962	Nuclear transcription factor Y subunit C-9
Tf0335			-	-	-	-	-	-	SI014,SI168	Ciclev10033529m	scaffold_4	2457798	2458868	C_unshiu_00979:mRNA_19.1	C_unshiu_00979	85390	86600	C2 domain protein	AGI-07	13.855
Tf0336			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797	C_unshiu_02599:mRNA_1.1	C_unshiu_02599	10362	14310	NAD(P)-linked oxidoreductase superfamily protein	AGI-08	54.304
Tf0337		AAvailable marker	O	-	-	-	O	O		Ciclev10031846m	scaffold_4	19635415	19637061	C_unshiu_00099:mRNA_23.1	C_unshiu_00099	186480	188051	Ap2 erf and b3 domain-containing transcription factor rav2	AGI-07	54.869
Tf0338			-	-	-	-	-	-		Ciclev10002202m	scaffold_5	41492325	41495372
Tf0339			-	-	-	-	-	-	SI019	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Tf0340			-	-	-	-	-	-		Ciclev10003996m	scaffold_5	27123826	27127430
Tf0341			-	-	-	-	-	-		Ciclev10009720m	scaffold_1	2025698	2028188
Tf0342			-	-	-	-	-	-	SI151	Ciclev10019088m	scaffold_3	1649410	1655963	C_unshiu_00343:mRNA_23.1	C_unshiu_00343	203038	209504	DNA repair helicase	AGI-05	5.510
Tf0343		AtAvailable marker	O	-	-	-	O	O		Ciclev10016587m	scaffold_2	29204680	29206501	C_unshiu_00022:mRNA_67.1	C_unshiu_00022	489282	490950	High mobility group B protein 7	AGI-06	44.393
Tf0344		AAvailable marker	O	-	-	-	O	O		Ciclev10016433m	scaffold_2	34624236	34631123	C_unshiu_00002:mRNA_17.1	C_unshiu_00002	124392	131264	Floral homeotic protein AGAMOUS	AGI-06	24.216
Tf0345			-	-	-	-	-	-	SI011	Ciclev10027918m	scaffold_8	22248129	22254029	C_unshiu_00639:mRNA_3.1	C_unshiu_00639	31842	37665	Auxin response factor
Tf0346			-	-	-	-	-	-		Ciclev10028485m	scaffold_8	24987539	24993295
Tf0347			-	-	-	-	-	-		Ciclev10020461m	scaffold_3	47429291	47431121
Tf0348			-	-	-	-	-	-	SI118	Ciclev10012920m	scaffold_6	11611994	11614367	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8	AGI-08	96.565
Tf0349			-	-	-	-	-	-		Ciclev10033770m	scaffold_4	20573683	20575539
Tf0350		OOthers	O	-	-	-	-	-	SI132	Ciclev10019034m	scaffold_3	8914744	8921411	C_unshiu_00695:mRNA_7.1	C_unshiu_00695	71483	77987	Acetyl-coenzyme A synthetase	AGI-05	43.295
Tf0351			-	-	-	-	-	-	SI122	Ciclev10021622m	scaffold_3	43472094	43473220	C_unshiu_00411:mRNA_17.1	C_unshiu_00411	160316	161284	Ethylene-responsive transcription factor 1B	AGI-05	52.655
Tf0352			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Tf0353		MDisagree by Marco analysis	O	-	-	-	-	-	SI087	Ciclev10018691m	scaffold_3	34696661	34702240	C_unshiu_00669:mRNA_17.2	C_unshiu_00669	126539	133312	Cell division cycle 5-like protein	AGI-08	53.069
Tf0354			-	-	-	-	-	-	SI070	Ciclev10021202m	scaffold_3	48704416	48708817	C_unshiu_00018:mRNA_33.1	C_unshiu_00018	219801	223933	Transcription factor ASG4
Tf0355			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0356			-	-	-	-	-	-	SI134,SI160	Ciclev10029063m	scaffold_8	998289	1001763	C_unshiu_00041:mRNA_95.3	C_unshiu_00041	588335	591780	Basic-leucine zipper (BZIP) transcription factor family	AGI-08	83.743
Tf0357			-	-	-	-	-	-	SI018	Ciclev10025390m	scaffold_7	2246732	2249558	C_unshiu_01055:mRNA_7.1	C_unshiu_01055	60614	63050	Zinc finger protein JACKDAW	AGI-02	71.294
Tf0358			-	-	-	-	-	-	SI098	Ciclev10025169m	scaffold_7	2049068	2051708	No
Tf0359			-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295
Tf0360			-	-	-	-	-	-	SI112	Ciclev10000627m	scaffold_5	38669123	38672110	C_unshiu_00430:mRNA_12.1	C_unshiu_00430	98615	101120	Trihelix transcription factor GT-2	AGI-09	43.140
Tf0361			-	-	-	-	-	-		Ciclev10005102m	scaffold_9	30778803	30783116
Tf0362			-	-	-	-	-	-	SI062	Ciclev10026199m	scaffold_7	224443	227133	C_unshiu_02579:mRNA_3.1	C_unshiu_02579	13228	15002	WUSCHEL-related homeobox 13
Tf0363			-	-	-	-	-	-	SI002,SI096	Ciclev10019714m	scaffold_3	49318106	49324231	C_unshiu_00018:mRNA_126.1	C_unshiu_00018	839780	845037	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0364		AAvailable marker	O	-	-	-	O	O		Ciclev10011266m	scaffold_6	24606501	24612654	C_unshiu_00135:mRNA_49.1	C_unshiu_00135	338118	344273	FACT complex subunit SSRP1	AGI-04	37.102
Tf0365			-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971
Tf0366			-	-	-	-	-	-		Ciclev10015541m	scaffold_2	26890335	26894409
Tf0367			-	-	-	-	-	-		Ciclev10033497m	scaffold_4	13941880	13946022
Tf0368		AAvailable marker	O	-	-	-	O	O	SI102	Ciclev10020717m	scaffold_3	40963774	40965744	C_unshiu_00735:mRNA_9.1	C_unshiu_00735	76673	78652	NAC transcription factor 29	AGI-05	48.590
Tf0369			-	-	-	-	-	-		Ciclev10032644m	scaffold_4	12320439	12324228
Tf0370			-	-	-	-	-	-		Ciclev10019820m	scaffold_3	47121093	47124518	C_unshiu_00023:mRNA_20.1	C_unshiu_00023	123134	131389	Hypothetical protein	AGI-05	69.117
Tf0371			-	-	-	-	-	-		Ciclev10002081m	scaffold_5	20377552	20384333	C_unshiu_00913:mRNA_4.1	C_unshiu_00913	37450	43326	Hypothetical protein	AGI-09	102.280
Tf0372			-	-	-	-	-	-		Ciclev10020156m	scaffold_3	44858333	44862278
Tf0373			-	-	-	-	-	-	SI088	Ciclev10011502m	scaffold_6	21229813	21233537	C_unshiu_00037:mRNA_60.1	C_unshiu_00037	387538	391239	Uridylate kinase, putative	AGI-04	61.716
Tf0374			-	-	-	-	-	-		Ciclev10016964m	scaffold_2	30886469	30892663
Tf0375			-	-	-	-	-	-		Ciclev10022365m	scaffold_3	13034654	13036082	C_unshiu_00020:mRNA_62.1	C_unshiu_00020	527751	528816	Homeobox leucine zipper protein	AGI-05	40.558
Tf0376		AAvailable marker	O	-	-	-	O	O	SI072	Ciclev10022680m	scaffold_3	8528292	8529236	C_unshiu_00154:mRNA_1.1	C_unshiu_00154	9832	10761	CRT binding factor 3	AGI-05	41.853
Tf0377			-	-	-	-	-	-		Ciclev10000850m	scaffold_5	39495951	39498826
Tf0378			-	-	-	-	-	-		Ciclev10014909m	scaffold_2	19028389	19031661
Tf0379			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0381			-	-	-	-	-	-		Ciclev10014039m	scaffold_2	10459593	10472483
Tf0383			-	-	-	-	-	-		Ciclev10005062m	scaffold_9	16383851	16393557
Tf0384			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Tf0385			-	-	-	-	-	-		Ciclev10014026m	scaffold_2	9008920	9021876
Tf0386		AAvailable marker	O	O	O	-	O	O	SI044,SI095	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein	AGI-04	41.367
Tf0387			-	-	-	-	-	-		Ciclev10015591m	scaffold_2	35642412	35646764
Tf0388			O	-	-	-	-	-		Ciclev10004533m	scaffold_9	11993282	11999324
Tf0389			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Tf0390			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Tf0391			-	-	-	-	-	-		Ciclev10020053m	scaffold_3	50133837	50139049
Tf0392			-	-	-	-	-	-		Ciclev10001099m	scaffold_5	43036925	43044008
Tf0393		AAvailable marker	O	-	-	-	-	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4									RP-09	29.347
Tf0394			-	-	-	-	-	-		Ciclev10001508m	scaffold_5	34910794	34916593
Tf0395			-	-	-	-	-	-		Ciclev10014499m	scaffold_2	31489811	31497594
Tf0396		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI035	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60
Tf0397			-	-	-	-	-	-	SI008	Ciclev10013334m	scaffold_6	23657256	23657810	C_unshiu_00098:mRNA_65.1	C_unshiu_00098	441975	442704	Ocs element-binding factor 1	AGI-04	40.646
Tf0398			-	-	-	-	-	-		Ciclev10025996m	scaffold_7	490750	492882
Tf0399			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0400			-	-	-	-	-	-		Ciclev10007357m	scaffold_1	928640	936397
Tf0401			-	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808
Tf0402			-	-	-	-	-	-		Ciclev10015893m	scaffold_2	36211961	36216858	C_unshiu_00077:mRNA_57.1	C_unshiu_00077	335424	340163	MYB-CC type transfactor	AGI-06	9.560
Tf0403			-	-	-	-	-	-		Ciclev10031750m	scaffold_4	21666061	21671693
Tf0404			-	-	-	-	-	-		Ciclev10000454m	scaffold_5	29808453	29811460
Tf0405			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497	C_unshiu_00220:mRNA_2.1	C_unshiu_00220	48148	53214	BEL1-like homeodomain protein 6	AGI-08	61.643
Tf0406		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10008206m	scaffold_1	23463843	23470911	C_unshiu_00338:mRNA_22.1	C_unshiu_00338	163174	169978	NAD-dependent protein deacetylase SRT1	AGI-01	28.515
Tf0407			-	-	-	-	-	-		Ciclev10008836m	scaffold_1	526813	529150
Tf0408			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0409			-	-	-	-	-	-		Ciclev10016959m	scaffold_2	30886469	30892663
Tf0410		AAvailable marker	O	-	-	-	O	O		Ciclev10032838m	scaffold_4	213798	215848	C_unshiu_00168:mRNA_34.1	C_unshiu_00168	273522	275858	Pollen-specific protein SF3	AGI-07	6.146
Tf0411		OOthers	O	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265	C_unshiu_00523:mRNA_15.1	C_unshiu_00523	100297	104594	Putative transcription factor PosF21	AGI-05	48.613
Tf0412			-	-	-	-	-	-		Ciclev10028306m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0414			-	-	-	-	-	-		Ciclev10007297m	scaffold_1	12883722	12897805
Tf0415			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0416			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Tf0419		AAvailable marker	O	O	O	-	-	O		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY
Tf0420		AAvailable marker	O	O	O	-	O	O		Ciclev10022018m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Tf0421			-	-	-	-	-	-		Ciclev10020367m	scaffold_3	32895854	32900578
Tf0422			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Tf0423			-	-	-	-	-	-		Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	50.361
Tf0424			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723	C_unshiu_00001:mRNA_134.1	C_unshiu_00001	904872	908655	Apyrase	AGI-07	77.041
Tf0425			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Tf0426			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Tf0427			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0429			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0431		AAvailable marker	O	-	-	-	-	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A
Tf0432		AAvailable marker	O	-	-	-	O	O		Ciclev10016685m	scaffold_2	31420457	31425299	C_unshiu_00091:mRNA_39.1	C_unshiu_00091	370141	375026	Nuclear transcription factor Y subunit A-7	AGI-06	38.958
Tf0433			-	-	-	-	-	-		Ciclev10021699m	scaffold_3	43420187	43422432
Tf0434			-	-	-	-	-	-		Ciclev10026455m	scaffold_7	5173846	5179562
Tf0436			-	-	-	-	-	-		Ciclev10021374m	scaffold_3	5318874	5321054
Tf0437			-	-	-	-	-	-		Ciclev10004471m	scaffold_9	1148083	1152025
Tf0438			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Tf0439			-	-	-	-	-	-		Ciclev10020486m	scaffold_3	915818	919213
Tf0440			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Tf0441			-	-	-	-	-	-		Ciclev10000491m	scaffold_5	953167	960232
Tf0442			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0443			-	-	-	-	-	-		Ciclev10012193m	scaffold_6	5886744	5892919
Tf0444			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797
Tf0445			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0446			-	-	-	-	-	-		Ciclev10020000m	scaffold_3	42990251	42995979
Tf0447			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Tf0448			-	-	-	-	-	-		Ciclev10026715m	scaffold_7	252320	254049
Tf0449		OOthers	O	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305	C_unshiu_01997:mRNA_4.1	C_unshiu_01997	32539	35330	Translation initiation factor IF-3	AGI-01	0.404
Tf0450			-	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Tf0451			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Tf0452			-	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Tf0454		AAvailable marker	O	-	-	-	O	O		Ciclev10027306m	scaffold_7	16108723	16113463	C_unshiu_00371:mRNA_10.1	C_unshiu_00371	121418	127245	GATA transcription factor	AGI-02	21.099
Tf0455		OOthers	O	-	-	-	-	-		Ciclev10017004m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein	AGI-06	114.172
Tf0456			-	-	-	-	-	-		Ciclev10020156m	scaffold_3	44858333	44862278
Vs0001			-	-	-	-	-	-
Vs0002		MDisagree by Marco analysis	-	-	-	-	-	-	SI103,SI115	Ciclev10000046m	scaffold_5	41184180	41190033	C_unshiu_00127:mRNA_46.1	C_unshiu_00127	341430	344325	Hypothetical protein	AGI-09	36.685	KmG-09	73.930	JtR-07	68.221
Vs0003		AAvailable marker	-	-	-	-	O	O	SI077					C_unshiu_00009:mRNA_117.1	C_unshiu_00009	675718	677501	Cysteine proteinase RD19a	AGI-09	35.312	KmG-09	72.447			NAT-09	93.467
Vs0004			-	-	-	-	-	-		Ciclev10021761m	scaffold_3	2078691	2083111	C_unshiu_00490:mRNA_23.1	C_unshiu_00490	182148	190847	Nucleosome assembly protein			KmG-06	51.244
Vs0005		OOthers	O	-	-	-	-	-	SI022,SI075	Ciclev10016009m	scaffold_2	33216839	33219042	C_unshiu_00002:mRNA_211.1	C_unshiu_00002	1511809	1513915	Epoxide hydrolase 2	AGI-06	31.521	KmG-02	59.329	JtR-06S	50.000	NAT-06S	50.000
Vs0006		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10025343m	scaffold_7	19024295	19026021	C_unshiu_00468:mRNA_22.1	C_unshiu_00468	132124	133922	Cytochrome P450 78A4	AGI-02	27.491			JtR-02	50.216	NAT-02S	3.328
Vs0007			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Vs0008			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892
Vs0009			-	-	-	-	-	-
Vs0010			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Vs0011			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Vs0012		Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Vs0013			-	-	-	-	-	-
Vs0014		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_00375:mRNA_10.1	C_unshiu_00375	50515	51680	Metallothionein
Vs0015		OOthers	-	-	-	-	-	-						C_unshiu_00001:mRNA_84.1	C_unshiu_00001	561308	564986	Mitochondrial outer membrane protein porin of 34 kDa	AGI-09	115.452	KmG-09	34.185	JtR-09S	15.823
Vs0016		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_02110:mRNA_3.2	C_unshiu_02110	27660	28723	Metallothionein	AGI-05	25.980	KmG-08	17.483	JtR-08
Vs0017			-	-	-	-	-	-		Ciclev10009470m	scaffold_1	6647158	6649599
Vs0018			-	-	-	-	-	-		Ciclev10026149m	scaffold_7	4612887	4617115
Vt0001		AAvailable marker	-	-	-	-	O	O		Ciclev10014290m	scaffold_2	35624935	35628855	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-06	16.327	KmG-06	68.041
Vt0002			-	-	-	-	-	-		Ciclev10032270m	scaffold_4	20868750	20872170
Vt0003			-	-	-	-	-	-		Ciclev10027667m	scaffold_8	8153660	8174407	C_unshiu_00616:mRNA_3.1	C_unshiu_00616	10808	18470	Hypothetical protein	AGI-08	56.724
Vt0004			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Vt0005			-	-	-	-	-	-		Ciclev10001888m	scaffold_5	36449346	36452178
Vt0006			-	-	-	-	-	-		Ciclev10010149m	scaffold_1	24914885	24923422
Vt0007			-	-	-	-	-	-		Ciclev10019734m	scaffold_3	49821906	49825730
Vt0008			-	-	-	-	-	-		Ciclev10019736m	scaffold_3	49256390	49259083
Vt0009			-	-	-	-	-	-		Ciclev10012382m	scaffold_6	24932481	24935909	C_unshiu_00135:mRNA_6.1	C_unshiu_00135	25891	28913	Major intrinsic protein (MIP) family transporter	AGI-04	38.770	KmG-04	14.707
Vt0010			-	-	-	-	-	-		Ciclev10020141m	scaffold_3	48560245	48562027
Vt0011		AAvailable marker	-	-	-	-	O	O		Ciclev10021162m	scaffold_3	12984411	12986574	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-05	41.306			JtR-05	37.780
Vt0012			-	-	-	-	-	-		Ciclev10007708m	scaffold_1	1806179	1809814
Vt0013			-	-	-	-	-	-		Ciclev10008981m	scaffold_1	13123280	13126173
Vt0014			-	-	-	-	-	-		Ciclev10029694m	scaffold_8	21102979	21105476
Vt0015			-	-	-	-	-	-		Ciclev10025952m	scaffold_7	2441452	2443391	C_unshiu_00025:mRNA_49.1	C_unshiu_00025	381829	383760	Hexosyltransferase	AGI-02	70.082	KmG-02	67.054	JtR-02	21.082
Vt0016			-	-	-	-	-	-		Ciclev10011403m	scaffold_6	17974828	17979364
Vt0017			-	-	-	-	-	-		Ciclev10031431m	scaffold_4	23705523	23709604
Vt0018			-	-	-	-	-	-		Ciclev10016206m	scaffold_2	22471208	22474774
Vt0019			-	-	-	-	-	-		Ciclev10002927m	scaffold_5	41913536	41914321
Vt0020			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1970129	1972842
Vt0021			-	-	-	-	-	-		Ciclev10007296m	scaffold_1	2015894	2023323
Vt0022			-	-	-	-	-	-		Ciclev10006852m	scaffold_9	24201196	24203794
Vt0023			-	-	-	-	-	-		Ciclev10016079m	scaffold_2	8712236	8714558
Vt0024			-	-	-	-	-	-		Ciclev10005069m	scaffold_9	21593473	21597037
Vt0025			-	-	-	-	-	-		Ciclev10025308m	scaffold_7	6764664	6770188
Vt0026			-	-	-	-	-	-		Ciclev10024169m	scaffold_3	44691395	44694360
Vt0027			-	-	-	-	-	-		Ciclev10031408m	scaffold_4	303399	306794
Vt0028			-	-	-	-	-	-		Ciclev10032489m	scaffold_4	18947498	18950949	C_unshiu_00039:mRNA_34.1	C_unshiu_00039	255025	269908	Hypothetical protein	AGI-07	51.998	KmG-07	44.183	JtR-07	39.088
Vt0029			-	-	-	-	-	-		Ciclev10031975m	scaffold_4	2451345	2454325	C_unshiu_00979:mRNA_17.1	C_unshiu_00979	79016	81937	GroES-like zinc-binding alcohol dehydrogenase family protein	AGI-07	13.238
Vt0030	Vt0030.k		O	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014	C_unshiu_01240:mRNA_4.1	C_unshiu_01240	27655	32960	Phospholipase D	AGI-02	12.615
Vt0031			-	-	-	-	-	-
Vt0032			O	-	-	-	-	-	SI024	Ciclev10024737m	scaffold_7	17901487	17905433	C_unshiu_00382:mRNA_15.1	C_unshiu_00382	163577	167662	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	AGI-02	25.601							RP-02	6.081
Vt0033			-	-	-	-	-	-		Ciclev10016829m	scaffold_2	23695881	23697100
Vt0034			-	-	-	-	-	-		Ciclev10000597m	scaffold_5	39630111	39635609
Vt0035			-	-	-	-	-	-		Ciclev10016383m	scaffold_2	8510712	8514409
Wy0001			-	-	-	-	-	-		Ciclev10004473m	scaffold_9	3564877	3568051
Wy0002			-	-	-	-	-	-		Ciclev10022129m	scaffold_3	18472967	18473951
Wy0003		AAvailable marker	O	-	-	-	O	O		Ciclev10001202m	scaffold_5	37189653	37192231	C_unshiu_00144:mRNA_30.1	C_unshiu_00144	215223	217733	Aminotransferase	AGI-09	46.823	KmG-09	52.581			NAT-09	69.467
Wy0004			-	-	-	-	-	-						C_unshiu_02819:mRNA_2.1	C_unshiu_02819	2728	4118	CXE carboxylesterase	AGI-08	70.463					NAT-082	65.434
Wy0005		DDominant marker	O	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028	No					AGI-05	83.570	KmG-05S	122.932
Wy0006			O	-	-	-	-	-		Ciclev10021901m	scaffold_3	4903592	4905871	C_unshiu_00628:mRNA_6.1	C_unshiu_00628	38419	40239	Bax inhibitor 1			KmG-05S	19.072	JtR-05	19.698	NAT-05	21.803
Wy0007			-	-	-	-	-	-		Ciclev10025280m	scaffold_7	15456948	15460803
Wy0008		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10009193m	scaffold_1	9297360	9299641	No					AGI-01	57.863	KmG-01	43.003	JtR-01S	99.300
Wy0009			-	-	-	-	-	-		Ciclev10022580m	scaffold_3	48621909	48624858
Wy0010			-	-	-	-	-	-		Ciclev10019848m	scaffold_3	9466071	9468445
Wy0011		OOthers	O	-	-	-	-	-	SI091	Ciclev10032364m	scaffold_4	24417602	24419019	C_unshiu_00001:mRNA_226.1	C_unshiu_00001	1429943	1431279	Enoyl CoA hydratase/isomerase	AGI-07	86.288
Wy0012			O	-	-	-	-	O		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor			KmG-032	11.250	JtR-031	4.898	NAT-03	11.970
Wy0013			-	-	-	-	-	-		Ciclev10021105m	scaffold_3	38229221	38232245
Wy0014			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Wy0015			O	-	-	-	-	-	SI041	Ciclev10028465m	scaffold_8	13101257	13103161	C_unshiu_02878:mRNA_1.1	C_unshiu_02878	9199	10715	UDP-glycosyltransferase 73C5	AGI-08	56.724
Wy0016			-	-	-	-	-	-	SI068	Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_01309:mRNA_6.1	C_unshiu_01309	21942	23382	UDP-glycosyltransferase 71B1			KmG-04	47.990
Wy0017			-	-	-	-	-	-		Ciclev10001019m	scaffold_5	38559099	38562819
Wy0018		AAvailable marker	-	-	-	-	O	O		Ciclev10021374m	scaffold_3	5318874	5321054	C_unshiu_00442:mRNA_14.1	C_unshiu_00442	123398	125451	Homeobox-leucine zipper protein HAT3	AGI-05	29.033	KmG-05S	20.128	JtR-05	19.008
Wy0019			-	-	-	-	-	-	SI031	Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2
Wy0020			-	-	-	-	-	-	SI007	Ciclev10005394m	scaffold_9	5549195	5553148	C_unshiu_00164:mRNA_5.1	C_unshiu_00164	17046	20923	Malate dehydrogenase	AGI-03	43.563
Wy0021			-	-	-	-	-	-		Ciclev10013675m	scaffold_6	7079176	7087001
Wy0022			-	-	-	-	-	-		Ciclev10032739m	scaffold_4	24914068	24915637
Wy0023			-	-	-	-	-	-	SI037	Ciclev10025834m	scaffold_7	70855	73880	C_unshiu_00706:mRNA_12.1	C_unshiu_00706	76103	78923	Thioredoxin-disulfide reductase
Wy0024			-	-	-	-	-	-		Ciclev10002554m	scaffold_5	21581031	21583751
Wy0025			-	-	-	-	-	-	SI004	Ciclev10032547m	scaffold_4	24434005	24435526	C_unshiu_00001:mRNA_229.1	C_unshiu_00001	1446446	1447952	NAC domain-containing protein 29
Wy0025.2	Wy0025.em		-	-	-	-	-	-		Ciclev10032547m	scaffold_4	24434005	24435526
Wy0026		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10010857m	scaffold_1	28321342	28323314	C_unshiu_02224:mRNA_5.1	C_unshiu_02224	30176	31684	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase	AGI-01	35.518
Wy0027			-	-	-	-	-	-		Ciclev10011949m	scaffold_6	18896261	18902614
Wy0028		AAvailable marker	-	-	-	-	O	O		Ciclev10007806m	scaffold_1	25001341	25004726	C_unshiu_00150:mRNA_3.1	C_unshiu_00150	18652	22079	Probable pectinesterase/pectinesterase inhibitor 61	AGI-01	26.171	KmG-01
Wy0029			-	-	-	-	-	-		Ciclev10012640m	scaffold_6	21145703	21148279	C_unshiu_00052:mRNA_26.1	C_unshiu_00052	161014	162179	Type II peroxiredoxin	AGI-04
Wy0030		AAvailable marker	O	-	-	-	O	O		Ciclev10001854m	scaffold_5	36229310	36230518	C_unshiu_00619:mRNA_10.1	C_unshiu_00619	87213	88404	EXORDIUM like 2	AGI-09	53.205	KmG-09	44.154	JtR-09S	63.577	NAT-09	65.585
Wy0031			-	-	-	-	-	-		Ciclev10002698m	scaffold_5	42326135	42327438
Wy0032		OOthers	O	-	-	-	O	O		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein	AGI-03	46.121	KmG-032	14.572	JtR-031	12.840
Wy0033			-	-	-	-	-	-		Ciclev10011317m	scaffold_6	16709179	16712039
Wy0034			-	-	-	-	-	-	SI367	Ciclev10026310m	scaffold_7	2299638	2302863	C_unshiu_00025:mRNA_32.1	C_unshiu_00025	269762	270443	Flavoprotein wrbA
Wy0035		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10014857m	scaffold_2	31148849	31150616	C_unshiu_00292:mRNA_13.1	C_unshiu_00292	110620	112650	FAD-binding Berberine family protein	AGI-06	36.863
Wy0036			-	-	-	-	-	-		Ciclev10004868m	scaffold_9	17114361	17116036
Wy0037			-	-	-	-	-	-		Ciclev10016309m	scaffold_2	28046592	28048907
Wy0038			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Wy0039		AAvailable marker	-	-	-	-	O	O		Ciclev10028965m	scaffold_8	18824262	18825514	C_unshiu_00459:mRNA_4.1	C_unshiu_00459	34475	34918	Hypothetical protein	AGI-08	45.276			JtR-08	16.276
Wy0040		AAvailable marker	O	-	-	-	-	O		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00001:mRNA_217.1	C_unshiu_00001	1378378	1380557	Hypothetical protein			KmG-04	12.855
Wy0041			-	-	-	-	-	-		Ciclev10025903m	scaffold_7	1295839	1297378	C_unshiu_00218:mRNA_18.1	C_unshiu_00218	93074	94183	GDP-mannose 4,6 dehydratase 2	AGI-02	75.406
Wy0042	Wy0042.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326
Wy0043	Wy0043.k		-	-	-	-	-	-
Wy0044	Wy0044.k		-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0044.2			-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0044.3			-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875	C_unshiu_00126:mRNA_45.1	C_unshiu_00126	300225	314275	Hypothetical protein									RP-05	49.102
Wy0045	Wy0045.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326	C_unshiu_02764:mRNA_1.1	C_unshiu_02764	1529	2654	Geraniol 10-hydroxylase-like protein	AGI-08	56.724
Wy0046	Wy0046.k		-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Wy0047	Wy0047.k		-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0048	Wy0048.k		-	-	-	-	-	-		Ciclev10010999m	scaffold_6	19900235	19904192	C_unshiu_00043:mRNA_54.1	C_unshiu_00043	424252	427984	Putative receptor protein kinase TMK1	AGI-04	63.371					NAT-04	21.157
Wy0049	Wy0049.k		-	-	-	-	-	-		Ciclev10015338m	scaffold_2	290799	294122
Wy0050	Wy0050.k		-	-	-	-	-	-		Ciclev10005669m	scaffold_9	28556663	28560571
Wy0051	Wy0051.k		-	-	-	-	-	-		Ciclev10001849m	scaffold_5	39325976	39327488
Wy0052	Wy0052.k		-	-	-	-	-	-
Wy0053	Wy0053.k		-	-	-	-	-	-		Ciclev10017466m	scaffold_2	27579627	27581411
Wy0054	Wy0054.em		-	-	-	-	-	-		Ciclev10018486m	scaffold_3	5585142	5593506
Wy0055	Wy0055.em		-	-	-	-	-	-						C_unshiu_00005:mRNA_81.1	C_unshiu_00005	686926	696896	Neurochondrin	AGI-01	118.691
Wy0056	Wy0056.em	AAvailable marker	-	-	-	-	O	O		Ciclev10014198m	scaffold_2	31740431	31747095	C_unshiu_00027:mRNA_81.1	C_unshiu_00027	521555	527308	Auxin response factor	AGI-06	36.788
Wy0057	Wy0057.em		-	-	-	-	-	-		Ciclev10008812m	scaffold_1	18270818	18273015
Wy0058	Wy0058.em		-	-	-	-	-	-		Ciclev10016274m	scaffold_2	29140509	29143804	C_unshiu_00022:mRNA_58.1	C_unshiu_00022	424974	428249	Plastid ribosomal protein L15
Wy0059	Wy0059.em		-	-	-	-	-	-		Ciclev10012904m	scaffold_6	8562431	8564865	C_unshiu_00232:mRNA_33.1	C_unshiu_00232	292640	294683	DUF538 family protein	AGI-08	91.502
Wy0060	Wy0060.em		-	-	-	-	-	-		Ciclev10020776m	scaffold_3	46998745	47002683	C_unshiu_00023:mRNA_2.1	C_unshiu_00023	7129	11067	Pto kinase interactor 1	AGI-02	14.597
Wy0061	Wy0061.em		-	-	-	-	-	-
Wy0062	Wy0062.em		-	-	-	-	-	-		Ciclev10011305m	scaffold_6	15214969	15222324	C_unshiu_00034:mRNA_76.1	C_unshiu_00034	634791	641934	Peptidyl-prolyl cis-trans isomerase PASTICCINO1	AGI-02	78.531
Wy0063	Wy0063.em		-	-	-	-	-	-		Ciclev10021336m	scaffold_3	29395094	29402560	C_unshiu_00549:mRNA_8.1	C_unshiu_00549	83149	90542	Splicing regulatory glutamine/lysine-rich protein 1	AGI-01	33.445
Wy0064	Wy0064.em		-	-	-	-	-	-		Ciclev10021336m	scaffold_3	29395094	29402560	C_unshiu_00549:mRNA_8.1	C_unshiu_00549	83149	90542	Splicing regulatory glutamine/lysine-rich protein 1
Wy0065	Wy0065.em		O	-	-	-	-	-
Wy0066	Wy0066.em		-	-	-	-	-	-		Ciclev10001670m	scaffold_5	42589392	42594049
Wy0100			-	-	-	-	-	-		Ciclev10018814m	scaffold_3	688264	692703

Key word search

Target: Genome/map	Scaffold/LG