Citrus CAPS Marker Database

Locus name: Af1205

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 500
Comment on PCR:
F-primer: CACGGCCTTCTACGATCTA
R-primer: GGGAGGTTACGAAGCGTTGGA

EST info

EST Accession number 1: CX672881
EST Accession number 2:

sequence-tagged site (STS seq)

STS:

AGCAGTCATGGCCCGGACCTGCATCTCCAAGGCGGAGATGTAATCAGTCGCTTCTTCTAG
AAGATTCAACGACGAAACCTTCCGGCAACCGGGAATCATCCGGCCGAGCACGCGCAATTT
CTTTTGGACAGGCGGCAACTTGTTCTTCCTCCTCATCGCTTCCTCCGGCTTCCTCCTCAA
CCGGCTACAGCCGGTGACTCTCACTTTAACCTGCCGCTTCTTGAGCCTCAAACTGGGGGG
ACTCGAGAGAATCGCGCGGCTCCACCGGGTGGCGCCTTTGGCCGAGACGGCCATCAGCCT
ATCAGCGGTTTCTCGGATTGCCTTGCCGGTTCTGGCCGACGAGCTCCGACGGCGCACGTG
GCGGACCGCTTGGAAAAGTTTGGACGAGTAGATCTGTTGCTCCTTATCCGTTCTCCAACG
C

STS source: Okitsu 46
STS Forward / Reverse: Foward read

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10002396m
Scaffold: scaffold_5
Start: 34161721
End: 34162652

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00196:mRNA_4.1
Scaffold: C_unshiu_00196
Start: 15219
End: 16117
Gene function: Basic helix-loop-helix DNA-binding superfamily protein, putative

AGI map info (Shimada et al. 2014)

AGI LG: AGI-09
AGI cM: 64.754

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: