Locus name: Af1223
CAPS PCR info
PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 400
Comment on PCR:
F-primer: AGAAGACTCAGCTCACGTCC
R-primer: CTGCTGCTGCTGGTGATATTC
EST info
EST Accession number 1: CN183525
EST Accession number 2:
sequence-tagged site (STS seq)
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID: Ciclev10009839m
Scaffold: scaffold_1
Start: 27111412
End: 27114276
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00347:mRNA_8.1
Scaffold: C_unshiu_00347
Start: 66555
End: 79401
Gene function: Flavin-binding kelch domain F box protein
AGI map info (Shimada et al. 2014)
AGI LG: AGI-09
AGI cM: 97.668
KmMg map info (Omura et al. 2003)
KmMg LG:
KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:
JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: