Citrus CAPS Marker Database

Locus name: Af1242

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1400
Comment on PCR:
F-primer: GCTGGCCCATTCAGTATGTA
R-primer: TTGGCAGGGCTATTTAACGTG

EST info

EST Accession number 1: DN620468
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
CTATATTTCATTATCATGTTGTTACTGGGCTTCTGCCACAGCTACCCTGTGGTAAACAAT
CGTATCTGAACTTGGATCTGCATGATACTGGCCATAAAATGCATATAAACCAATTGATAT
GAAGCTGAGAATAACAAATCTCCACCATGCCTCGTAGTGCAACTGCATGAAAGTCAAGAT
AATTATCACAAATATCCTTCCCTACTCTAAATTCTTAGATATTTCTCCATCAGTTTTGTA
CGTAATTGTGACTCTAGGAAGGTGCAGGATGCAAAAGTGGGGTAGAAGAATACCTGAGCA
AAAAGGAACAAGTTGAAGAAAATAGAAACAGCCGGCAGAAGGGGAACCCCAGGACACGAA
AACCCTGGAGGATCCGAATAACCCTGAGACATAAATAGGAGGAGGTAAAATAATGAAAAC
ATTACATGAAGTGTACAGGGCATTCAAAAATTCAAACAACTGAAGTAATTAACCAGAGAA
CAATGACCGCTTCTAAACAACTATAAAGGCAGCTCATTATTTACAATGCCCATCAACAAG
CCCTTTATAACTTATGACTTC
STS source: Clementine haploid
STS Forward / Reverse: Foward read
STS:
GGTAGGTCATAGTCAGTTCTTGCCTTTGATATATTTAGTGTAAATTCTGAAATTATTGCC
TACTTTTATGCCATTAGGCTTGACCCTACTTTCTTGCTTTCAGTTTCATTCATGATGCAT
GATGACGGTAAGGATATTGATGCATGATGGTGTGGTAGGATTTCCAAGGAAACTAATATT
TGTCATGTGGAGCTTACCTTTTTCATTGGCTGGTTTAAGACTGGCTATTCTGTTGTTTCA
GCTTGTGTTATAGCACTTCGTTGGAAGGATAGGACATCGAGAAATGATTCATCAAGATTG
ACTTCAGCCTGGCGGCAGGGTGTCATTTGTCTTATTATAATCGCTTGTTGTGGTTTTGGA
GCTGGACTGTTTTACCGTATTAATGCTTCATATATTCTTCTGATAGTAGCAGTTGTTATT
GCAGTACTCGCTTCTGCCATGCTTTGCTTACGACACGTGAG
STS source: Clementine haploid
STS Forward / Reverse: Reverse read

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10019465m
Scaffold: scaffold_3
Start: 50417890
End: 50421625

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)