Citrus CAPS Marker Database
Locus name:
Af1261
CAPS PCR info
PCR Anneal-Temp (℃) / Method:
Td
Main product (bp):
900
Comment on PCR:
F-primer:
TATTTACCGTGCGAGCCTA
R-primer:
ATTATCATAGTTGGGCTATCT
EST info
EST Accession number 1:
CX049836
EST Accession number 2:
sequence-tagged site (STS seq)
STS:
ACTTTCAGCCATATAGTGTGGCTTCTCATGGACCTTTCCGCAGCAAATATGGAGGGGTAT
GCATCTTTCAGACCTTTCTGGAACTAGTAACATAATGAACTTTTGCAGCATTGTTTCTGG
AGATTATTTTTAAGACTTCAATTTGATTATTAACATCTTTTATCCATCACAAGTTTT
STS source:
Clementine haploid
STS Forward / Reverse:
Reverse read
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID:
Ciclev10027978m
Scaffold:
scaffold_8
Start:
20321003
End:
20329872
Target on C. unshiu (v1.0)
AGI map info (Shimada et al. 2014)
KmMg map info (Omura et al. 2003)
JtTr map info (Omura et al. 2003)
Km/O41 map info (Nakano et al. 2003)
Rp/Sa map info (Ohta et al. 2011)
CAPS genotyping (Hybrid cv/Citrus collection)
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)