Locus name: Af1396
CAPS PCR info
PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 600
Comment on PCR:
F-primer: CGGAGGCAAACGAAGA
R-primer: CCGAATTCGAATTGTAGTGTG
EST info
EST Accession number 1: CX674914
EST Accession number 2:
sequence-tagged site (STS seq)
STS:
TGCAGGCATAGTGCGTTGCAGGGCCCGGACAGTGTGTTCAGCAATCACGTCCGGTGTAAC TTTGGGAGCTTCAGATCCAGGGGTCACCATGTTGGGCTTCAAAAGGGTACCCTCAAGAAG GACATGGTGGTCATTCAGAGCCTTGTAGCATGCAGCAAGAACACGCTCGGTCACATCAGC ACACTTCTTGATGTCATGGGGACCGTCAACAAGGATCTCAGGTTCAACAATGGGAACAAG GCCATTCTCCTGGCAGATGATAGCATATCGGGCCAGGCCATTGGCATTCTCATTGATGGC CAGCTGCGAAGGCTCATTAGGGCCAATCTTAAGAACAGCACGCCATTTGGCAAAACGAGC ACCAGCTTCATAGTATTTCTGGCAGCGCTGGGCGAGGCCATCAAGACCCTGGGTGGTGGT CTCACCATTGGTACCAGCAAGCTCAACAGTACCCTTGTCAACCTTAATTCCAGGGAGGAC TCCACCCTCCTTCAAGACATCAACAAAGGGCTTGCCTGCAAAATCACTAACATAAATAAG TTTCGAAGGTCAAAATAAAAT |
STS source: Clementine haploid
STS Forward / Reverse: Combined sequence of both reads
Experiments: Restriction fragment profile
Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: Rsa1
Comment:
Figure legend:
A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
Target on C. clementina (v1.0)
Transcript ID: Ciclev10022545m
Scaffold: scaffold_3
Start: 4920662
End: 4923421
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00520:mRNA_16.2
Scaffold: C_unshiu_00520
Start: 166824
End: 167867
Gene function: Ribosomal protein L19 family protein
AGI map info (Shimada et al. 2014)
AGI LG: AGI-05
AGI cM: 28.041
KmMg map info (Omura et al. 2003)
KmMg LG:
KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:
JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: