Locus name: Al0008
CAPS PCR info
PCR Anneal-Temp (℃) / Method: 60Main product (bp): 2400
Comment on PCR: Additional bands
F-primer: CCACCAGACTCCCCGACTC
R-primer: TCAAGCATGGTTCCCAAAGTT
EST info
EST Accession number 1: C95205EST Accession number 2:
sequence-tagged site (STS seq)
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Population name: Kankitsu Chuukanbohon Nou8gou x Siamese AcidlessRestriction enzyme: Dra1
Comment:
Figure legend:
A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
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Target on C. clementina (v1.0)
Transcript ID: Ciclev10001908mScaffold: scaffold_5
Start: 40317721
End: 40321609
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00054:mRNA_1.1Scaffold: C_unshiu_00054
Start: 5765
End: 8674
Gene function: 26S proteasome non-ATPase regulatory subunit 14
AGI map info (Shimada et al. 2014)
AGI LG:AGI cM:
KmMg map info (Omura et al. 2003)
KmMg LG:KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG: SA-09Rp/Sa cM: 50.699
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:DNA sequence around SNP1:
DNA sequence around SNP2:
DNA sequence around SNP3:
DNA sequence around SNP4: