Citrus CAPS Marker Database

Locus name: Al0037

CAPS PCR info

PCR Anneal-Temp (℃) / Method: 60
Main product (bp): 1500
Comment on PCR:
F-primer: CTAGAGAAATAGCCCCAATA
R-primer: ATAAATTTAAGTTGCCAAAAG

EST info

EST Accession number 1: C95237
EST Accession number 2: DC892881

sequence-tagged site (STS seq)

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Population name: Kankitsu Chuukanbohon Nou8gou x Siamese Acidless
Restriction enzyme: Rsa1
Comment: PCR_condition: 58C aneal
Figure legend:

A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless

Population name: Kiyomi x Miyagawa-wase
Restriction enzyme: Rsa1
Comment:
Figure legend:

Target on C. clementina (v1.0)

Transcript ID: Ciclev10026259m
Scaffold: scaffold_7
Start: 14310100
End: 14311942

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_02045:mRNA_3.1
Scaffold: C_unshiu_02045
Start: 17414
End: 19393
Gene function: CCR4-NOT transcription complex subunit 7

AGI map info (Shimada et al. 2014)

AGI LG: AGI-02
AGI cM: 15.816

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: