Citrus CAPS Marker Database

Locus name: Al0228


CAPS PCR info

PCR Anneal-Temp (℃) / Method:
Main product (bp):
Comment on PCR: No product
F-primer: AATTTGCCCTGTTATTTCGTT
R-primer: GTTCTTTTGGGCTTCTTTTTG

EST info

EST Accession number 1: C95287
EST Accession number 2: DC892921

sequence-tagged site (STS seq)


Experiments: Restriction fragment profile


Experiments: CAPS pattern of hybrid cultivar


Experiments: CAPS pattern of Citrus collection


Experiments: Segregation pattern


Target on C. clementina (v1.0)

Transcript ID: Ciclev10009018m
Scaffold: scaffold_1
Start: 26206063
End: 26208427

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00315:mRNA_25.1
Scaffold: C_unshiu_00315
Start: 212819
End: 220361
Gene function: Serine/threonine-protein kinase HT1

AGI map info (Shimada et al. 2014)

AGI LG:
AGI cM:

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG: JtR-034
JtTr cM: 7.115

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: