Citrus CAPS Marker Database

Locus name: Al0648


CAPS PCR info

PCR Anneal-Temp (℃) / Method: 52
Main product (bp):
Comment on PCR: No product
F-primer: TTCCATGCTTCGCACTC
R-primer: AAAGTTTTTCGGTTCAGGATT

EST info

EST Accession number 1: C95572
EST Accession number 2: DC893089

sequence-tagged site (STS seq)


Experiments: Restriction fragment profile


Experiments: CAPS pattern of hybrid cultivar


Experiments: CAPS pattern of Citrus collection


Experiments: Segregation pattern


Target on C. clementina (v1.0)

Transcript ID: Ciclev10001973m
Scaffold: scaffold_5
Start: 26990579
End: 26995388

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)