Locus name: Cp1738
CAPS PCR info
PCR Anneal-Temp (℃) / Method: TdMain product (bp): 800
Comment on PCR:
F-primer: GCCTGGCAAATCTAATGG
R-primer: TCTGTTGTTAAACTCGCTGAC
EST info
EST Accession number 1: CK933293EST Accession number 2:
sequence-tagged site (STS seq)
STS:| AACTCTCCATCTATCTCTTCTACGAGCCACAACTCACGACCCTTCCACGCCGCCCGATCC GAAACGCCTGACCACGCTCCTCAGCTTCGGCCATAGCTCTCGGGCCACGGCCGCCGCCGT CATCGAAGCCCTCATGGACCGCCTTCAGACAACCCACGATGCATCCGTCGCCATCAAGTC CCTCATCGCCGTCCATCACATCGTCAAACATGGAAGCTTCATTCTCCAAGATCAGCTCTC TGTTTATCCCTCCGCCGGTGGAAGAAACTATCTTAAATTGTCAAACTTCAGAGACAACAC GACGCCGCTTACTTGGGAACTCTCTTCGTGGGTCAGATGGTACGCTTTATATCTCGAACA CCTCTTGTCCACTTCTAGGGTTTTGGGTTTCTTCCTT |
STS Forward / Reverse:
Experiments: Restriction fragment profile
Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)Comment:
Figure legend:
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Experiments: CAPS pattern of hybrid cultivar
Resriction enzyme: Rsa1Rank as CAPS marker: Available marker
Comment:
Figure legend:
CVName 1. Nagami, 2. Budha's, 3. Miyagawa, 4. Trovita, 5. Kiyomi, 6. Tachibana, 7. Koji, 8. Kinokuni (8' Hirakishu), 9. Mato pumello, 10. Kunip,
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
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Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)Restriction enzyme: Rsa1
Comment:
Figure legend:
A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
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Target on C. clementina (v1.0)
Transcript ID: Ciclev10025941mScaffold: scaffold_7
Start: 5388458
End: 5389981
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00303:mRNA_12.1Scaffold: C_unshiu_00303
Start: 100918
End: 102276
Gene function: Putative clathrin assembly protein
AGI map info (Shimada et al. 2014)
AGI LG:AGI cM:
KmMg map info (Omura et al. 2003)
KmMg LG:KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping: HbCultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1: SI237DNA sequence around SNP1:
| AAACTTCAGAGACAACACGACGCCGCTTACTTGGGAACTCTCTTCGTGGGTCAGATGGTA [T/C]GCTTTATATCTCGAACACCTCTTGTCCACTTCTAGGGTTTTGGGTTTCTTCCTT |
DNA sequence around SNP2:
| GGAAGCTTCATTCTCCAAGATCAGCTCTCTGTTTATCCCTCCGC[T/C]GGTGGAAGAAA CTATCTTAAATTGTCAAACTTCAGAGACAACACGACGCCGCTTACTTGG |
DNA sequence around SNP3:
DNA sequence around SNP4: