Locus name: Cp1925
CAPS PCR info
PCR Anneal-Temp (℃) / Method: TdMain product (bp): 600
Comment on PCR:
F-primer: GTTAATTAGATATGGCGTGAG
R-primer: TTAATTCCGGACTGTAGCTT
EST info
EST Accession number 1: CK938043EST Accession number 2:
sequence-tagged site (STS seq)
STS:| GANGGCTATAGTGATCACATTGAGCCGAGAAGAATGCAAGATATAAGATCAATGAGTGGA ACTACATTTGAGGCTGATGCTGAGAATGTTATGAGAGAAATTACTCCTGTCCTCGACCCT AGTAAACATAAGGGCCACNGCTGGTGAGCCCCGAAAAATACGCTTTATCTTTTTCACCTT ATTATTGTTTTTTCTTCCTTTTTCATTTTCCTGTTCTTGTTTGATTGCCCTTGTAATTTA ACTCCATCAGGGAAGATAGCTGTGATTGGCGGGTGTCGTGAGTACACTGGTGCACCATAT TTCGCTGCTATTTCGGCTTTGAAAATTGTCAGTGCTCTGCTCATATTTGCTTTGTTGTTT TAATCCTTTAAAGCCAGCTAGTTTTGAGTGAGTGCAATTGTTATGTGTTACTTGTAGGGT GCAGATTTATCTCATGTGTTCTGTACAAAAGATGCTGCTCCCGTTATCAAAAGCTACAGT CCGGAATTAAA |
STS Forward / Reverse: Foward read
Experiments: Restriction fragment profile
Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)Comment:
Figure legend:
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Experiments: CAPS pattern of hybrid cultivar
Resriction enzyme: Hinf1Rank as CAPS marker: Available marker
Comment:
Figure legend:
CVName 1. Nagami, 2. Budha's, 3. Miyagawa, 4. Trovita, 5. Kiyomi, 6. Tachibana, 7. Koji, 8. Kinokuni (8' Hirakishu), 9. Mato pumello, 10. Kunip,
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
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Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)Restriction enzyme: Hinf1
Comment:
Figure legend:
A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
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Target on C. clementina (v1.0)
Transcript ID: Ciclev10005182mScaffold: scaffold_9
Start: 3115971
End: 3120271
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00051:mRNA_29.1Scaffold: C_unshiu_00051
Start: 224928
End: 229203
Gene function: YjeF family domain-containing protein
AGI map info (Shimada et al. 2014)
AGI LG: AGI-03AGI cM: 24.457
KmMg map info (Omura et al. 2003)
KmMg LG:KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping: HbCultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:DNA sequence around SNP1:
DNA sequence around SNP2:
DNA sequence around SNP3:
DNA sequence around SNP4: