Locus name: Cp2188
CAPS PCR info
PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 1400
Comment on PCR:
F-primer: GCTTTGCTGGCCACTATTCAG
R-primer: AACAAGACTGCCTACCGCTAT
EST info
EST Accession number 1: CF837984
EST Accession number 2:
sequence-tagged site (STS seq)
STS:
GATTGTGCAGAGACTTTGTCCATCACAGGAAAAGGAATGAAGAAGCCAGGCACAACTTAC CCAATAGAAGATAAAAACCCAGCTGATGCCATTGCACAGCTACCGGCTATGGATTTGTTT TGGTTGTAGGGAAGTTTCCGTTTGCCAAACCGCCTTCCTACAACATCAGCAAAACCTAAT GCAGAGCAAGTAAATAGAGCTTATGAACAATAATTTATTGCAAATAGATCAGTGAAAGTG CAAATACAGTTCTTTATGTCTAGTTTGCATGAGAAGAGATTAAGATATTGAACAGCTGAA AGGCCAGTAAACAAGGATGATAGAACTGGC |
STS source:
STS Forward / Reverse: Reverse read
Experiments: Restriction fragment profile
Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:
Experiments: CAPS pattern of hybrid cultivar
Resriction enzyme: Hinf1
Rank as CAPS marker: Others
Comment:
Figure legend:
CVName 1. Nagami, 2. Budha's, 3. Miyagawa, 4. Trovita, 5. Kiyomi, 6. Tachibana, 7. Koji, 8. Kinokuni (8' Hirakishu), 9. Mato pumello, 10. Kunip,
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
Resriction enzyme: Nde2
Rank as CAPS marker: Available marker
Comment:
Figure legend:
CVName 1. Nagami, 2. Budha's, 3. Miyagawa, 4. Trovita, 5. Kiyomi, 6. Tachibana, 7. Koji, 8. Kinokuni (8' Hirakishu), 9. Mato pumello, 10. Kunip,
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: Nde2
Comment:
Figure legend:
A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless
Target on C. clementina (v1.0)
Transcript ID: Ciclev10028997m
Scaffold: scaffold_8
Start: 24666729
End: 24669708
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00021:mRNA_116.1
Scaffold: C_unshiu_00021
Start: 778469
End: 782836
Gene function: Phytol kinase
AGI map info (Shimada et al. 2014)
AGI LG: AGI-08
AGI cM: 2.186
KmMg map info (Omura et al. 2003)
KmMg LG:
KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:
JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping: Hb
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: