Locus name: Gn0018
CAPS PCR info
PCR Anneal-Temp (℃) / Method: 54
Main product (bp): 1800
Comment on PCR:
F-primer: GGTCCTCAAACTTCTGTG
R-primer: CAGAGAGAAGATGACCTG
EST info
EST Accession number 1: AB004247
EST Accession number 2:
sequence-tagged site (STS seq)
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID: Ciclev10030969m
Scaffold: scaffold_4
Start: 5053540
End: 5061039
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00616:mRNA_15.1
Scaffold: C_unshiu_00616
Start: 99349
End: 106841
Gene function: V-type H+-transporting ATPase subunit A
AGI map info (Shimada et al. 2014)
AGI LG: AGI-08
AGI cM: 84.345
KmMg map info (Omura et al. 2003)
KmMg LG: KmG-02
KmMg cM: 16.986
JtTr map info (Omura et al. 2003)
JtTr LG:
JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: