Citrus CAPS Marker Database

Locus name: Gn0019


CAPS PCR info

PCR Anneal-Temp (℃) / Method: 56
Main product (bp): 2400
Comment on PCR:
F-primer: CATTCAAGTGAACAAGGACAA
R-primer: CCGCATTAATGTCGTAACTA

EST info

EST Accession number 1: AB011798
EST Accession number 2:

sequence-tagged site (STS seq)


Experiments: Restriction fragment profile


Experiments: CAPS pattern of hybrid cultivar


Experiments: CAPS pattern of Citrus collection


Experiments: Segregation pattern


Target on C. clementina (v1.0)

Transcript ID: Ciclev10002883m
Scaffold: scaffold_5
Start: 26949951
End: 26952841

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_02041:mRNA_4.1
Scaffold: C_unshiu_02041
Start: 18003
End: 20672
Gene function: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1

AGI map info (Shimada et al. 2014)

AGI LG:
AGI cM:

KmMg map info (Omura et al. 2003)

KmMg LG: KmG-09
KmMg cM: 17.972

JtTr map info (Omura et al. 2003)

JtTr LG: JtR-09S
JtTr cM: 22.316

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: