Locus name: Gn0046
CAPS PCR info
PCR Anneal-Temp (℃) / Method: 52
Main product (bp): 1400
Comment on PCR: Additional bands
F-primer: TTAGGGTTGGCAGAAGAGTTG
R-primer: CACAATTCCTCCCACAAAAAG
EST info
EST Accession number 1: DC895222
EST Accession number 2:
sequence-tagged site (STS seq)
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID: Ciclev10001212m
Scaffold: scaffold_5
Start: 21522433
End: 21525218
Target on C. unshiu (v1.0)
Transcript ID: C_unshiu_00201:mRNA_11.2
Scaffold: C_unshiu_00201
Start: 136005
End: 138785
Gene function: Aspartic proteinase nepenthesin-1
AGI map info (Shimada et al. 2014)
AGI LG: AGI-07
AGI cM: 64.812
KmMg map info (Omura et al. 2003)
KmMg LG:
KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG: JtR-08
JtTr cM: 23.181
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: