Citrus CAPS Marker Database

Locus name: Ov0316

CAPS PCR info

PCR Anneal-Temp (℃) / Method: 58
Main product (bp): 2800
Comment on PCR:
F-primer: CCAAGGCCAGAGTGAGAG
R-primer: CCCTTTGGCTTGTAGTAACAC

EST info

EST Accession number 1: AU186492
EST Accession number 2: DC893911

sequence-tagged site (STS seq)

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): Trovita orange/Kiyomi/Miyagawa-wase
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10020995m
Scaffold: scaffold_3
Start: 3963024
End: 3966516

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00318:mRNA_19.1
Scaffold: C_unshiu_00318
Start: 155111
End: 158235
Gene function: Zinc finger CCCH domain-containing protein 43

AGI map info (Shimada et al. 2014)

AGI LG:
AGI cM:

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG: JtR-05
JtTr cM: 31.749

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: