Citrus CAPS Marker Database

Locus name: Ov0516

CAPS PCR info

PCR Anneal-Temp (℃) / Method: 54
Main product (bp): 220
Comment on PCR: Additional band (200 bp)
F-primer: TTTGATACTTGCGGAAGAAAT
R-primer: ACAGGCAAAACCACCATT

EST info

EST Accession number 1: DC894078
EST Accession number 2: DC894079

sequence-tagged site (STS seq)

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): Trovita orange/Kiyomi/Miyagawa-wase
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10020524m
Scaffold: scaffold_3
Start: 35332191
End: 35335063

Target on C. unshiu (v1.0)

AGI map info (Shimada et al. 2014)

KmMg map info (Omura et al. 2003)

JtTr map info (Omura et al. 2003)

Km/O41 map info (Nakano et al. 2003)

Rp/Sa map info (Ohta et al. 2011)

CAPS genotyping (Hybrid cv/Citrus collection)

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)