Citrus CAPS Marker Database

Locus name: Tf0326

CAPS PCR info

PCR Anneal-Temp (℃) / Method: 62
Main product (bp): 1200
Comment on PCR:
F-primer: TTGACGCCACTAAGTA
R-primer: AGCATTTGGGTATCATATCTA

EST info

EST Accession number 1: CK938083
EST Accession number 2:

sequence-tagged site (STS seq)

STS:

GTAATGCTTTAAAGTACTATGAGGTTTATAATTTTAATGAATAAGCATATATTTCATGTC
CAGTGATTGTGACGAAGAGAAAAATATGTATTAGCTTTTGATTCTATGATAGCCCAGCTG
TATGGGTAACTTCATTAAAATCTAATAXACATTACTCAAGCTACCCTTTAGTAATTTTGT
TTGAAGCTGTAAAATTGTACTTTTTTAGGCGGTGGATTATGGAGATTGTTATGTTCTCAT
GGAAGAATGCATGATTTTAATCTAATTGAGAGTCGAGGTTGTTTAGTGAAG

STS source:
STS Forward / Reverse:

Experiments: Restriction fragment profile

Experiments: CAPS pattern of hybrid cultivar

Resriction enzyme: Hha1
Rank as CAPS marker: Available marker
Comment: DNA sample: New CCN
Figure legend: DNA sample: Lane 9 (Mato) not analyzed.

CVName 1. Nagami, 2. Budha's, 3. Miyagawa, 4. Trovita, 5. Kiyomi, 6. Tachibana, 7. Koji, 8. Kinokuni (8' Hirakishu), 9. Mato pumello, 10. Kunip,
11. King, 12. Ponkan (12' Ohta ponkan), 13. Dancy, 14. Willowleaf, 15. Clementine, 16. C-haploid, 17. Encore, 18. Amaka, 19. Youkou, 20. Shiranuhi,
21. Harumi, 22. Nishinokaori, 23. Duncan GF, 24. Mineola, 25. Seminol, 26. Seihou, 27. Akemi, 28. Tsunokaori, 29. Ariake, 30. Nankou,
31. Mihocore, 32. Hareyaka, 34. Harehime, 35. Hayaka, 36. Southern Red, 37. Amakusa, 38. Setoka, *. Flying Dragon, SY(Southern Yellow), 40(MK, Mukakukishu)

Experiments: CAPS pattern of Citrus collection

Rsetriction enzyme: Hha1
Comment: DNA sample: New CCN
Figure legend:

CV (No.1 Top) 101 Tahiti, 100 Rangpurlime, 102 Limonia, 104 LisbonL, 99 SweetLime, 92 Hirado, 87 MGF, 85 Kinukawa, 84 Hassaku, 83 Yamamikan, 78 Natsudaidai, 58 Rokugatu, Tr Trovita, 50 WNV, 44 Tankan, 42 Iyo,
(No.1 Bottom) 39 HgNt, 36 Ujukitsu, 32 Kawabata, 30 Shunkokan, 70 Yuzu, 54 Henka, 53 Ichang lemon, 37 Kunenbo, Mg Miyagawa, 31 Yatsushiro, 27 Kabuchii, 26 Ponkan, 25 Medet. 22. Dancy, 14 Tachibana, 11 Hirakishu (26' Ohta ponkan)

(No.2 Top) 6 Cleopatra, 4 CQ, 2 Fukuremikan, FD Hiryuu, 124 Largeleaf, 125 Small leaf, 141 CTV-S, 136 Rubidoaux,
(No.2 Bottom) FD, Hassaku, Km, F1, RP94, SA, 02, 04, 05, 06, 07, 08, 09, 10, 11, 13

BDZ BenDi Zao, SO Shuto, BP Banpeiyu

Experiments: Segregation pattern

Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: Hha1
Comment:
Figure legend:

A: A255 (Okitu46gou), G: G434 (Kankitsu Chuukanbohon Nou5gou),
K or Km: Kiyomi, M or Mg: Miyagawa-wase, MK: Mukaku kisyu,
LE: Lee, O: Okitsu41gou, RP or RP94: Kankitsu Chukanbohon Nou6gou,
Sacd or SA: Siamese Acidless, SW: Sweet spring, T or Tr: Trovita orange,
X: meaningless

Population name: A255 (Okitsu46gou) x G434 (Kankitsu Chuukanbohon Nou5gou)
Restriction enzyme: NC
Comment:
Figure legend:

Target on C. clementina (v1.0)

Transcript ID: Ciclev10024695m
Scaffold: scaffold_7
Start: 2501520
End: 2509737

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_02417:mRNA_1.1
Scaffold: C_unshiu_02417
Start: 3692
End: 11684
Gene function: Histone-lysine N-methyltransferase SUVR5

AGI map info (Shimada et al. 2014)

AGI LG: AGI-02
AGI cM: 69.928

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping: Hb, Cc

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K: M,K

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1: SI085
DNA sequence around SNP1:

CTAATAXACATTACTCAAGCTACCCTTTAGTAATTTTGTT[T/G]GAAGCTGTAAAATTG
TACTTTTTTAGGCGGTGGATTATGGAGATTGTTATGTTCTCATGG

SNP2:
DNA sequence around SNP2:

SNP3:
DNA sequence around SNP3:

SNP4:
DNA sequence around SNP4: