Citrus CAPS Marker Database

Locus name: Tf0335

CAPS PCR info

PCR Anneal-Temp (℃) / Method: Td
Main product (bp): 600
Comment on PCR:
F-primer: CAATGGTTTGCTGTCGGGTGG
R-primer: GGCCGCTGTGTTGGGTAGTTT

EST info

EST Accession number 1: CK939747
EST Accession number 2:

sequence-tagged site (STS seq)

STS:
CTGGGAAGGAAAATCCTGTATGGAGAACTAAGTTTGCTGCTGTAGTTGATGACTCAAACT
TTCAAGACGCGGCGCTGCACGTTGAAGTCTATAGCAGAGAGCCTATTTTTCTTAGGGAAA
GGCTTCTGGGAACCGCAACTATTGCCTTGAAAGAATTTTTGGCCAAGTATAGTAAAAATT
CTGAGGGTTCAAGATCAGGAATTGAAGAAGTTGGGAGCTACCAGCTGCGTAAAAAAAATT
CTAACAAACCTCAAGGATTTATTGACGTTTCCGTATGTATCTCAGAAGAAAGGGAAGAGC
CAAGTTCATACCCAGGTATCTGACAAGTCTGTCAAGTAACTCCTCTCTGTAATTTTTTAT
GACACATTTTTGGCATATGAATGAAGCTTTTAAGTATATGAACGTTACATTTAACTGGCA
ATTTTTTAGGTAATGAGGGAGGAATCATGCTCGCGGACCAC
STS source:
STS Forward / Reverse:

Experiments: Restriction fragment profile

Compared cultivars (Left, (Middle), Right): A255(Okitsu46gou)/G434(Kankitsu Chuukanbohon Nou5)
Comment:
Figure legend:

Experiments: CAPS pattern of hybrid cultivar

Experiments: CAPS pattern of Citrus collection

Experiments: Segregation pattern

Target on C. clementina (v1.0)

Transcript ID: Ciclev10033529m
Scaffold: scaffold_4
Start: 2457798
End: 2458868

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00979:mRNA_19.1
Scaffold: C_unshiu_00979
Start: 85390
End: 86600
Gene function: C2 domain protein

AGI map info (Shimada et al. 2014)

AGI LG: AGI-07
AGI cM: 13.855

KmMg map info (Omura et al. 2003)

KmMg LG:
KmMg cM:

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1: SI014
DNA sequence around SNP1:
AGACGCGGCGCTGCACGTTGAAGTCTATAGCAGAGAGCCTATTTTTCTTAGGGAAAGGCT
[T/C]CTGGGAACCGCAACTATTGCCTTGAAAGAATTTTTGGCCAAGTATAGTAAAAATT
CTGAG
SNP2: SI168
DNA sequence around SNP2:
CATATGAATGAAGCTTTTAAGTATATGAACGTTACATTTAACTGGCAATTTTTTAGGTAA
[T/C]GAGGGAGGAATCATGCTCGCGGACCAC
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: