Citrus CAPS Marker Database

Locus name: Vs0004


CAPS PCR info

PCR Anneal-Temp (℃) / Method: 56
Main product (bp): 1300
Comment on PCR:
F-primer: AGCGAGCGAGTTACGGTT
R-primer: AATAACATTACATGTCAT

EST info

EST Accession number 1: C21914
EST Accession number 2:

sequence-tagged site (STS seq)


Experiments: Restriction fragment profile


Experiments: CAPS pattern of hybrid cultivar


Experiments: CAPS pattern of Citrus collection


Experiments: Segregation pattern


Target on C. clementina (v1.0)

Transcript ID: Ciclev10021761m
Scaffold: scaffold_3
Start: 2078691
End: 2083111

Target on C. unshiu (v1.0)

Transcript ID: C_unshiu_00490:mRNA_23.1
Scaffold: C_unshiu_00490
Start: 182148
End: 190847
Gene function: Nucleosome assembly protein

AGI map info (Shimada et al. 2014)

AGI LG:
AGI cM:

KmMg map info (Omura et al. 2003)

KmMg LG: KmG-06
KmMg cM: 51.244

JtTr map info (Omura et al. 2003)

JtTr LG:
JtTr cM:

Km/O41 map info (Nakano et al. 2003)

Km/O41 LG:
Km/O41 cM:

Rp/Sa map info (Ohta et al. 2011)

Rp/Sa LG:
Rp/Sa cM:

CAPS genotyping (Hybrid cv/Citrus collection)

CAPS genotyping:

Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)

Cultivar identification M/T/K:

SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)

SNP1:
DNA sequence around SNP1:
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: