Citrus CAPS Marker Database
Locus name:
Wy0034
CAPS PCR info
PCR Anneal-Temp (℃) / Method:
Main product (bp):
Comment on PCR:
No product
F-primer:
AATTGAATTGCCCACCGAATC
R-primer:
GCCATCACCAGCGAAAACAC
EST info
EST Accession number 1:
DC894870
EST Accession number 2:
sequence-tagged site (STS seq)
Experiments: Restriction fragment profile
Experiments: CAPS pattern of hybrid cultivar
Experiments: CAPS pattern of Citrus collection
Experiments: Segregation pattern
Target on C. clementina (v1.0)
Transcript ID:
Ciclev10026310m
Scaffold:
scaffold_7
Start:
2299638
End:
2302863
Target on C. unshiu (v1.0)
Transcript ID:
C_unshiu_00025:mRNA_32.1
Scaffold:
C_unshiu_00025
Start:
269762
End:
270443
Gene function:
Flavoprotein wrbA
AGI map info (Shimada et al. 2014)
AGI LG:
AGI cM:
KmMg map info (Omura et al. 2003)
KmMg LG:
KmMg cM:
JtTr map info (Omura et al. 2003)
JtTr LG:
JtTr cM:
Km/O41 map info (Nakano et al. 2003)
Km/O41 LG:
Km/O41 cM:
Rp/Sa map info (Ohta et al. 2011)
Rp/Sa LG:
Rp/Sa cM:
CAPS genotyping (Hybrid cv/Citrus collection)
CAPS genotyping:
Cultivar identification (M: Cultivar identification manual / T: Ninomiya et al. 2015/ K: Nonaka et al. 2017)
Cultivar identification M/T/K:
SNP typing by Illumina GoldenGate assay (Fujii et al. 2013)
SNP1:
SI367
DNA sequence around SNP1:
GTCAGGAAACCACTGCTTGGACTGCAATTACCCAGTTGGCCCACCATGGAATGCTATTTG
[T/G]TCCTATTGGGTACACCTTTGG
SNP2:
DNA sequence around SNP2:
SNP3:
DNA sequence around SNP3:
SNP4:
DNA sequence around SNP4: