Citrus CAPS Marker Database

National Agriculture and Food Research Organization
Key word search
  
Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Af0005 ------TP Ciclev10005894mscaffold_924528532455181
Af0006 ------TP Ciclev10001011mscaffold_53688310336887975
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Af0010 ------TP Ciclev10004080mscaffold_54029749240299711
Af0011 ------TP Ciclev10025929mscaffold_71135799011362560
Af0012 ------TP Ciclev10006108mscaffold_924587932459573
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
Af0015 ------TP Ciclev10019449mscaffold_34402177944027536J C_unshiu_00217:mRNA_10.1C_unshiu_002178639391294Hypothetical proteinAGI-0554.268
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Af0017 ------TP Ciclev10029358mscaffold_8313112317158
Af0018 ------TP Ciclev10000947mscaffold_54069180140694522
Af1003 O-----TP Ciclev10001093mscaffold_51560585215610028J C_unshiu_00533:mRNA_20.1C_unshiu_00533131430141111Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrialAGI-0222.436
Af1004 ------TP Ciclev10008926mscaffold_12442676024434342
Af1005 ------TP Ciclev10012491mscaffold_62071559020719704
Af1006 ------TP Ciclev10005512mscaffold_92466110924664797
Af1007 ------TP Ciclev10021398mscaffold_31281473112817148
Af1008 ------TP Ciclev10006973mscaffold_924700852471703
Af1009 ------TP Ciclev10015365mscaffold_23581832735822366
Af1010 ------TP Ciclev10014106mscaffold_23165651031666206
Af1011 O-----TP Ciclev10013781mscaffold_62530682925315243J C_unshiu_00009:mRNA_53.1C_unshiu_00009289462299397Hypothetical proteinRP-0460.491
Af1012 ------TP Ciclev10026672mscaffold_71627039416272027
Af1013 ------TP Ciclev10022053mscaffold_34862190948624876
Af1014 ------TP Ciclev10018683mscaffold_34359463843605172
Af1016 ------TP Ciclev10025840mscaffold_723944712397293
Af1017 O-----TP Ciclev10006402mscaffold_92267155422672639NoAGI-0346.274
Af1019 ------TP Ciclev10005635mscaffold_9192512196670
Af1021 ------TP Ciclev10022113mscaffold_34066463540665640
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Af1023 ------TP Ciclev10028042mscaffold_827196542725331
Af1024 ------TP Ciclev10016735mscaffold_23584185935844177
Af1025 ------TP Ciclev10019927mscaffold_34833710548339028
Af1026 O-----TP Ciclev10016450mscaffold_22469026124692734J C_unshiu_00136:mRNA_33.1C_unshiu_00136278221280719Period circadian protein, putative isoform 1RP-06.124.027
Af1027 O-----TP Ciclev10005293mscaffold_929463012950297
Af1028 O-----TP Ciclev10000335mscaffold_54211362142120391
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1030 ------TP Ciclev10026876mscaffold_739307883932748
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
Af1032 O-----TP Ciclev10009868mscaffold_183774898379348
Af1033 O-----TP Ciclev10016063mscaffold_21045689910459385
Af1034 ------TP Ciclev10013228mscaffold_619501211950908
Af1035 O-----TP Ciclev10030982mscaffold_42346918423472872
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Af1038 ------
Af1039 ------TP Ciclev10031458mscaffold_41438114414384897
Af1040 ------TP Ciclev10019364mscaffold_32935185429354190
Af1041 ------TP Ciclev10002311mscaffold_54030030640304768
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Af1043 ------TP Ciclev10026060mscaffold_72004993620052008J C_unshiu_00519:mRNA_19.1C_unshiu_00519110187111261Ribonucleoside-diphosphate reductase subunit M2AGI-0244.231
Af1044 ------TP Ciclev10013662mscaffold_61637885816383103
Af1045 ------TP Ciclev10000659mscaffold_591977749204364
Af1046 ------TP Ciclev10000873mscaffold_53999223439996269
Af1047 ------TP Ciclev10019002mscaffold_31635722716363309J C_unshiu_01252:mRNA_3.1C_unshiu_012526066966705NADH dehydrogenase subunit 11AGI-0541.306
Af1048 ------TP Ciclev10019002mscaffold_31635722716363309
Af1050 ------TP Ciclev10002662mscaffold_54287956342882316
Af1051 O-----TP Ciclev10000105mscaffold_53509313235106001
Af1052 O-----TP Ciclev10004444mscaffold_91280815412820311J C_unshiu_00508:mRNA_9.1C_unshiu_005084038558179Hypothetical proteinAGI-0856.724
Af1053 O-----TP Ciclev10014664mscaffold_22920681829208977
Af1054 ------TP Ciclev10005132mscaffold_920333312036879
Af1055 ------TP Ciclev10001625mscaffold_54229797942300281
Af1056 ------TP Ciclev10015905mscaffold_22659597226598955J C_unshiu_00262:mRNA_14.1C_unshiu_002628457387520Purple acid phosphatase 3AGI-0666.320
Af1057 ------TP Ciclev10000654mscaffold_51267741412680761
Af1058 ------TP Ciclev10018655mscaffold_32300102623009675
Af1059 ------TP Ciclev10011827mscaffold_62306638423072168J C_unshiu_00038:mRNA_98.1C_unshiu_00038554982560549Plastidic glucose transporter 4AGI-0444.840
Af1060 O-----TP Ciclev10000400mscaffold_54291837142923480J C_unshiu_00370:mRNA_16.1C_unshiu_003707528379772Tonoplast monosaccharide transporter 2AGI-0923.647
Af1061 O-----TP Ciclev10024969mscaffold_760804106084393
Af1062 ------TP Ciclev10012766mscaffold_61489293914897320J C_unshiu_00102:mRNA_47.1C_unshiu_00102331172333886PRA1 family protein A1AGI-0893.624
Af1064 ------TP Ciclev10004309mscaffold_93051333330517676
Af1065 ------TP Ciclev10009538mscaffold_11100875911012720
Af1066 ------TP Ciclev10024951mscaffold_738870103890047
Af1067 O-----
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Af1069 ------TP Ciclev10005528mscaffold_917871211788837
Af1070 O-----TP Ciclev10008140mscaffold_11730856617311235
Af1071 ------TP Ciclev10008192mscaffold_12860732528610917
Af1072 ------TP Ciclev10005792mscaffold_91354513713548134
Af1073 O-----TP Ciclev10021041mscaffold_3632882635612
Af1074 ------TP Ciclev10015644mscaffold_21230876112314225
Af1077 ------TP Ciclev10019936mscaffold_34787644847878633
Af1078 ------TP Ciclev10007573mscaffold_194288419434694
Af1079 ------TP Ciclev10009570mscaffold_132551403258139
Af1080 ------TP Ciclev10001557mscaffold_53831498938317341
Af1081 ------TP Ciclev10010514mscaffold_156502175655629
Af1082 ------TP Ciclev10021811mscaffold_34386958343874373
Af1083 ------TP Ciclev10025156mscaffold_71550555615510930
Af1084 ------TP Ciclev10008467mscaffold_12571686225720071J C_unshiu_00066:mRNA_57.1C_unshiu_00066369928382143Hypothetical proteinAGI-0124.643
Af1085 ------TP Ciclev10001010mscaffold_54069180140694522
Af1086 ------TP Ciclev10031563mscaffold_41051001810517939J C_unshiu_00028:mRNA_1.2C_unshiu_00028411512036AP-2 complex subunit muAGI-0541.306
Af1087 O-----TP Ciclev10019689mscaffold_32479635124800588J C_unshiu_00286:mRNA_17.1C_unshiu_00286132648135466Glycine hydroxymethyltransferaseAGI-0541.306
Af1088 O-----TP Ciclev10031611mscaffold_41717111417174966
Af1089 ------TP Ciclev10028589mscaffold_860689446075685
Af1090 ------TP Ciclev10019200mscaffold_3951691958430
Af1091 O-----TP Ciclev10021043mscaffold_34331604643317909J C_unshiu_00411:mRNA_2.1C_unshiu_004111151013352Arabinose 5-phosphate isomeraseAGI-0552.655
Af1092 O-----TP Ciclev10019279mscaffold_35086809650873164
Af1093 ------TP Ciclev10011263mscaffold_61905551819058726
Af1094 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinAGI-0130.175
Af1095 ------TP Ciclev10014502mscaffold_21069542410700095
Af1096 ------TP Ciclev10020597mscaffold_34206148842063267J C_unshiu_00778:mRNA_10.1C_unshiu_007788974191509Cytochrome P450 82A4AGI-0551.052
Af1097 ------TP Ciclev10014845mscaffold_22382986223832918
Af1098 ------TP Ciclev10028668mscaffold_8356241360220
Af1099 ------TP Ciclev10019462mscaffold_360724606076187
Af1100 ------TP Ciclev10026703mscaffold_71085348710855215J C_unshiu_00451:mRNA_17.1C_unshiu_00451120744122474Ran BP2/NZF zinc finger-like superfamily protein isoform 1AGI-0213.326
Af1101 ------TP Ciclev10022644mscaffold_388436448845811
Af1102 ------TP Ciclev10020214mscaffold_34162795241634431
Af1103 ------TP Ciclev10018380mscaffold_21139330311394035
Af1104 ------TP Ciclev10015941mscaffold_23215529832158290
Af1105 ------TP Ciclev10002128mscaffold_54117787441181556
Af1106 ------TP Ciclev10031741mscaffold_42213114222133007
Af1107 ------TP Ciclev10009146mscaffold_146069124610637
Af1108 ------TP Ciclev10009222mscaffold_180461818049306
Af1109 ------J C_unshiu_00194:mRNA_16.1C_unshiu_001949641598120Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1AGI-0548.590
Af1110 ------TP Ciclev10028599mscaffold_896568659660001J C_unshiu_01425:mRNA_1.1C_unshiu_014253335522N-carbamoylputrescine amidaseAGI-0856.690
Af1111 ------TP Ciclev10015086mscaffold_22302119323023457J C_unshiu_00172:mRNA_31.1C_unshiu_00172270783273047Glucan endo-1,3-beta-glucosidase 13AGI-0683.445
Af1112 ------TP Ciclev10001559mscaffold_54149679241499173
Af1113 ------TP Ciclev10028842mscaffold_813761231378446
Af1114 ------TP Ciclev10022658mscaffold_3602713605468
Af1115 ------TP Ciclev10020832mscaffold_32057778620583404
Af1116 ------TP Ciclev10001154mscaffold_567490246753178J C_unshiu_00100:mRNA_44.1C_unshiu_00100361556365479Magnesium transporter MRS2-like proteinAGI-0985.810
Af1117 ------TP Ciclev10028909mscaffold_81256310212564623
Af1118 ------TP Ciclev10029373mscaffold_851594285162015
Af1119 ------TP Ciclev10012975mscaffold_61872314718725557
Af1120 ------TP Ciclev10008829mscaffold_11123248211237918
Af1121 ------TP Ciclev10025591mscaffold_761274646131417
Af1122 ------TP Ciclev10033093mscaffold_42387159323873478
Af1123 ------TP Ciclev10009597mscaffold_116878941690412
Af1124 ------
Af1126 ------TP Ciclev10026538mscaffold_72065609920658251
Af1127 ------TP Ciclev10016337mscaffold_23299856033003916
Af1128 ------TP Ciclev10022649mscaffold_34950828849511063
Af1129 ------TP Ciclev10014531mscaffold_287273468730038
Af1130 ------TP Ciclev10012011mscaffold_62242509422426402
Af1131 ------TP Ciclev10006197mscaffold_923628292365557
Af1132 ------TP Ciclev10005061mscaffold_918362501840208
Af1133 ------TP Ciclev10001729mscaffold_54297875242983516
Af1134 ------TP Ciclev10032388mscaffold_42144380321447097
Af1135 ------TP Ciclev10002795mscaffold_53325635433257201
Af1136 ------TP Ciclev10002356mscaffold_52135405421361949
Af1137 ------TP Ciclev10009474mscaffold_120386812041094
Af1138 ------TP Ciclev10002375mscaffold_54056010940563236
Af1139 ------TP Ciclev10000272mscaffold_54265399442661287
Af1140 ------TP Ciclev10029224mscaffold_813369071339200
Af1141 ------
Af1142 ------TP Ciclev10008681mscaffold_1487184489198
Af1143 ------TP Ciclev10012182mscaffold_62112798421132025
Af1145 ------TP Ciclev10018013mscaffold_22456585724567752
Af1146 ------TP Ciclev10008189mscaffold_12259367122599178
Af1147 ------TP Ciclev10012837mscaffold_62236543322367412
Af1148 ------TP Ciclev10025238mscaffold_779048657908319
Af1149 ------TP Ciclev10025360mscaffold_71298595412989228J C_unshiu_02261:mRNA_2.1C_unshiu_022611915621966Glycerol kinaseAGI-0521.630
Af1150 ------TP Ciclev10031943mscaffold_42540903525412164
Af1151 ------TP Ciclev10022903mscaffold_33660819736611090
Af1153 ------TP Ciclev10015940mscaffold_22012417020127095
Af1154 ------TP Ciclev10029070mscaffold_82414398824146294
Af1155 ------TP Ciclev10016372mscaffold_23583683035839763
Af1156 ------TP Ciclev10028887mscaffold_869016306904625
Af1157 ------TP Ciclev10009325mscaffold_112345551235706
Af1158 ------TP Ciclev10020023mscaffold_332418623247042
Af1159 ------TP Ciclev10022925mscaffold_327744652775592
Af1160 ------TP Ciclev10022213mscaffold_374253537428313
Af1161 ------TP Ciclev10017060mscaffold_244955964498439
Af1162 ------TP Ciclev10020996mscaffold_34954671249548191
Af1163 ------TP Ciclev10031039mscaffold_42550644625511133
Af1164 ------TP Ciclev10019787mscaffold_359810665985524
Af1165 ------TP Ciclev10021620mscaffold_33933173139333098
Af1166 ------TP Ciclev10021716mscaffold_34157681341581730
Af1168 ------TP Ciclev10022842mscaffold_32838962528390574
Af1169 ------TP Ciclev10006148mscaffold_918444201846037
Af1169b ------TP Ciclev10029381mscaffold_82237515322376849
Af1171 ------TP Ciclev10008298mscaffold_1275263280936
Af1172 ------TP Ciclev10001677mscaffold_53597495435979998
Af1173 ------TP Ciclev10009205mscaffold_12459159824593689
Af1174 ------TP Ciclev10014963mscaffold_22931417629319032
Af1175 ------TP Ciclev10009729mscaffold_136475393651252
Af1176 ------TP Ciclev10017100mscaffold_23598034135983262
Af1177 ------TP Ciclev10005989mscaffold_921683872170546J C_unshiu_00085:mRNA_13.1C_unshiu_000857834180308CASP-like protein 1E1AGI-0318.579
Af1178 ------
Af1179 ------TP Ciclev10006271mscaffold_92913606729137517
Af1180 ------TP Ciclev10003612mscaffold_52719235027195683
Af1181 ------TP Ciclev10009123mscaffold_180635308066056
Af1182 ------TP Ciclev10020464mscaffold_34287481442879300
Af1183 ------TP Ciclev10005344mscaffold_9280915283060
Af1184 ------TP Ciclev10019895mscaffold_33210577432108155
Af1185 ------TP Ciclev10012743mscaffold_61223103712235473
Af1186 ------
Af1187 ------TP Ciclev10031748mscaffold_42499601725000652J C_unshiu_00001:mRNA_314.1C_unshiu_0000119916931996431Tocopherol O-methyltransferaseAGI-0785.027
Af1188 ------TP Ciclev10021960mscaffold_356066015609366
Af1189 ------TP Ciclev10005793mscaffold_91483707414840606
Af1190 ------TP Ciclev10023762mscaffold_34651003946512543
Af1191 ------TP Ciclev10028098mscaffold_8180851185769
Af1192 ------TP Ciclev10022723mscaffold_33709478537098257
Af1193 ------TP Ciclev10028241mscaffold_82345663023459052
Af1194 ------TP Ciclev10026223mscaffold_782550468256442
Af1195 ------TP Ciclev10021820mscaffold_34203425542039591
Af1196 ------TP Ciclev10032970mscaffold_42109040821092841
Af1197 ------TP Ciclev10009151mscaffold_11646794216471056
Af1198 ------TP Ciclev10021819mscaffold_323196752322962
Af1199 ------TP Ciclev10019763mscaffold_34955405049560198
Af1200 ------TP Ciclev10029354mscaffold_81806476118071003
Af1201 ------TP Ciclev10012248mscaffold_61663752016640347
Af1202 ------TP Ciclev10033216mscaffold_41592757615929918
Af1203 ------TP Ciclev10021949mscaffold_34021931540224503
Af1204 ------TP Ciclev10029631mscaffold_82409720624099101
Af1205 ------TP Ciclev10002396mscaffold_53416172134162652J C_unshiu_00196:mRNA_4.1C_unshiu_001961521916117Basic helix-loop-helix DNA-binding superfamily protein, putativeAGI-0964.754
Af1206 ------TP Ciclev10002697mscaffold_54210931642112542
Af1207 ------TP Ciclev10025335mscaffold_71560506515607345J C_unshiu_00628:mRNA_20.1C_unshiu_00628144683146646Flavonoid 3'-monooxygenaseAGI-0221.344
Af1208 ------TP Ciclev10029134mscaffold_82303629123037524J C_unshiu_02220:mRNA_1.1C_unshiu_022201198213216Tonoplast intrinsic proteinAGI-0817.057
Af1209 ------TP Ciclev10022439mscaffold_312811191281817
Af1210 ------TP Ciclev10026807mscaffold_72005647520058190
Af1211 ------TP Ciclev10007095mscaffold_962267316229337
Af1212 ------TP Ciclev10032370mscaffold_41711891617121135
Af1213 ------TP Ciclev10010027mscaffold_128219222823925
Af1214 ------TP Ciclev10005447mscaffold_91283934512844087
Af1218 ------TP Ciclev10009894mscaffold_12623740526239791
Af1219 ------TP Ciclev10022271mscaffold_34220029942203934
Af1220 ------TP Ciclev10013088mscaffold_62272468222726973
Af1221 ------TP Ciclev10022216mscaffold_363291336332201
Af1222 ------TP Ciclev10018015mscaffold_23593458935935920
Af1223 ------TP Ciclev10009839mscaffold_12711141227114276J C_unshiu_00347:mRNA_8.1C_unshiu_003476655579401Flavin-binding kelch domain F box proteinAGI-0997.668
Af1224 ------TP Ciclev10002263mscaffold_599795159982669
Af1225 ------TP Ciclev10027859mscaffold_810943661097096
Af1226 ------
Af1227 ------TP Ciclev10022750mscaffold_34267204342673648
Af1228 ------TP Ciclev10026542mscaffold_783179788319191
Af1229 ------TP Ciclev10016825mscaffold_21344181313443080
Af1230 ------TP Ciclev10026057mscaffold_7370952372493
Af1231 ------TP Ciclev10002376mscaffold_51218328112186007
Af1232 ------TP Ciclev10011608mscaffold_62054109620546049
Af1233 ------TP Ciclev10025897mscaffold_72084194220846077
Af1234 ------TP Ciclev10007572mscaffold_11997533219979144
Af1235 ------TP Ciclev10026233mscaffold_71721289517215557
Af1236 ------TP Ciclev10015450mscaffold_22685238126857537
Af1237 ------TP Ciclev10021146mscaffold_310580121060668
Af1238 ------TP Ciclev10031252mscaffold_41662633816629094
Af1239 ------
Af1240 ------TP Ciclev10011152mscaffold_62374884723753978
Af1241 ------TP Ciclev10008227mscaffold_114018421406346
Af1242 ------TP Ciclev10019465mscaffold_35041789050421625
Af1244 ------TP Ciclev10006361mscaffold_944481674450777
Af1244b ------TP Ciclev10016184mscaffold_22777924727785501
Af1245 ------TP Ciclev10019739mscaffold_34812912348133714
Af1246 ------TP Ciclev10002048mscaffold_52879713528801282
Af1247 ------TP Ciclev10011980mscaffold_62063804920641557
Af1248 ------TP Ciclev10007063mscaffold_916387701641073
Af1249 ------TP Ciclev10017171mscaffold_23366001133663665
Af1251 ------TP Ciclev10002135mscaffold_52970668829710388
Af1252 ------TP Ciclev10027813mscaffold_82420238424209439
Af1253 ------TP Ciclev10020405mscaffold_332012063204377J C_unshiu_00163:mRNA_29.1C_unshiu_00163211551214568Phosphate/phosphoenolpyruvate translocatorAGI-0524.709
Af1254 ------TP Ciclev10003301mscaffold_53675145336759896
Af1255 ------TP Ciclev10006003mscaffold_92806122128063450
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Af1260 ------TP Ciclev10001188mscaffold_53886966638875561
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Af1263 ------TP Ciclev10005448mscaffold_92849434828496251
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Af1265 ------TP Ciclev10031646mscaffold_42278910422792252
Af1266 ------TP Ciclev10032367mscaffold_484003788404853
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Af1268 ------TP Ciclev10011546mscaffold_62252321322529556
Af1269 ------TP Ciclev10009375mscaffold_12704312427045483
Af1270 ------TP Ciclev10011405mscaffold_61758989517593051
Af1271 ------TP Ciclev10025653mscaffold_71332358313328683
Af1272 ------TP Ciclev10019689mscaffold_32479635124800588
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Af1274 ------TP Ciclev10009370mscaffold_131525483153983
Af1275 ------TP Ciclev10028274mscaffold_81303517413037307
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Af1277 ------TP Ciclev10030804mscaffold_42381151123814763
Af1278 ------TP Ciclev10009508mscaffold_169038046908960
Af1279 ------TP Ciclev10031302mscaffold_41451078714516311
Af1281 ------TP Ciclev10029683mscaffold_82036663720367616
Af1282 ------
Af1283 ------TP Ciclev10016366mscaffold_22975772329762309
Af1285 ------TP Ciclev10010796mscaffold_11280759712808725
Af1286 ------
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Af1288 ------TP Ciclev10016357mscaffold_23580351235805985
Af1289 ------TP Ciclev10001940mscaffold_542898764293681
Af1290 ------TP Ciclev10029472mscaffold_82441315724415621
Af1291 ------TP Ciclev10026757mscaffold_747794004780310
Af1292 ------TP Ciclev10026736mscaffold_766773146680214
Af1293 ------TP Ciclev10014998mscaffold_21659779616602257
Af1294 ------TP Ciclev10018252mscaffold_22777486327778271
Af1295 ------TP Ciclev10030829mscaffold_434680833477274
Af1296 ------TP Ciclev10031556mscaffold_41913359219137895
Af1297 ------TP Ciclev10013207mscaffold_62331186723313814
Af1298 ------TP Ciclev10005845mscaffold_920372732040825
Af1299 ------TP Ciclev10017055mscaffold_22763816327639131
Af1300 ------TP Ciclev10008203mscaffold_185396478542949
Af1301 ------TP Ciclev10025759mscaffold_7866845870030
Af1302 ------TP Ciclev10031454mscaffold_41445776614462726
Af1303 ------TP Ciclev10009361mscaffold_12281092922812161
Af1304 ------TP Ciclev10019494mscaffold_322104852215202
Af1305 ------TP Ciclev10029439mscaffold_81976007719761961
Af1306 ------TP Ciclev10014843mscaffold_22896866828973736
Af1307 ------TP Ciclev10005707mscaffold_953105135314498
Af1308 ------TP Ciclev10025747mscaffold_71362550413630800
Af1309 ------TP Ciclev10021713mscaffold_35064775350652010
Af1310 ------TP Ciclev10016380mscaffold_21448140214484929
Af1311 ------TP Ciclev10009720mscaffold_120256982028188
Af1312 ------TP Ciclev10014367mscaffold_22902243329030537J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1AGI-0637.883
Af1313 ------TP Ciclev10014748mscaffold_23122229931225439
Af1314 ------TP Ciclev10001751mscaffold_53828341938284959
Af1315 ------TP Ciclev10025598mscaffold_7203839207450
Af1316 ------TP Ciclev10006289mscaffold_9685220687072
Af1317 ------TP Ciclev10022803mscaffold_33593219835935023
Af1318 ------TP Ciclev10016868mscaffold_21254954312550712
Af1320 ------TP Ciclev10018023mscaffold_23460247934604518
Af1321 ------TP Ciclev10009751mscaffold_11637116816375666J C_unshiu_00108:mRNA_25.1C_unshiu_00108320409344557Hypothetical proteinAGI-0634.500
Af1322 ------TP Ciclev10003088mscaffold_54171556241717774
Af1324 ------TP Ciclev10002404mscaffold_53818966938190638
Af1325 ------TP Ciclev10026096mscaffold_762874606289468
Af1326 ------TP Ciclev10021439mscaffold_34325833943260615
Af1327 ------TP Ciclev10006293mscaffold_92949859529499368
Af1328 ------TP Ciclev10022653mscaffold_33983468039837971
Af1329 ------
Af1330 ------TP Ciclev10032948mscaffold_41992708419929921
Af1331 ------TP Ciclev10002737mscaffold_54138640941389807
Af1332 ------TP Ciclev10013051mscaffold_62083442720836151J C_unshiu_00052:mRNA_57.1C_unshiu_0005245595945768460S acidic ribosomal proteinAGI-04
Af1333 ------TP Ciclev10012166mscaffold_61428119714286862
Af1335 ------TP Ciclev10016822mscaffold_22754966027551146
Af1336 ------TP Ciclev10012322mscaffold_686214398630049
Af1337 ------TP Ciclev10024178mscaffold_32341957423420180
Af1338 ------TP Ciclev10004154mscaffold_92466609224671850
Af1340 ------TP Ciclev10015433mscaffold_23547007835472862
Af1341 ------TP Ciclev10002526mscaffold_54318661843188986
Af1342 ------TP Ciclev10020692mscaffold_32929211129295993
Af1343 ------TP Ciclev10006560mscaffold_92803535528036664
Af1344 ------TP Ciclev10006134mscaffold_92940819429411173
Af1345 ------TP Ciclev10013023mscaffold_61308231313084012J C_unshiu_01022:mRNA_2.1C_unshiu_01022856610161Histone H2AAGI-0893.624
Af1346 ------TP Ciclev10013045mscaffold_61354752913550344
Af1347 ------TP Ciclev10011781mscaffold_62443077924434240
Af1348 ------TP Ciclev10005778mscaffold_92121674821221111
Af1349 ------TP Ciclev10032073mscaffold_432902733293928
Af1350 ------TP Ciclev10008817mscaffold_12501774825021583
Af1351 ------TP Ciclev10016286mscaffold_23491821734919258
Af1352 ------TP Ciclev10029282mscaffold_81111325911117344
Af1353 ------TP Ciclev10009740mscaffold_11402655714027565
Af1354 ------TP Ciclev10029831mscaffold_82134894721352692
Af1355 ------
Af1356 ------TP Ciclev10009976mscaffold_12283750022839817
Af1357 ------TP Ciclev10019924mscaffold_336502943652372
Af1358 ------TP Ciclev10004514mscaffold_9566506571956
Af1359 ------TP Ciclev10007524mscaffold_12598780325992258
Af1360 ------TP Ciclev10008482mscaffold_130615493065503
Af1361 ------TP Ciclev10005795mscaffold_92890361628907377
Af1362 ------TP Ciclev10027931mscaffold_828889922895645J C_unshiu_00152:mRNA_9.1C_unshiu_001527256486513Hypothetical proteinAGI-0880.366
Af1363 ------TP Ciclev10015634mscaffold_21093151510935724
Af1364 ------TP Ciclev10007962mscaffold_12602627826032641
Af1366 ------TP Ciclev10022785mscaffold_34245629942460637
Af1367 ------TP Ciclev10022240mscaffold_336434423647377
Af1369 ------TP Ciclev10008015mscaffold_125519202555129
Af1370 ------TP Ciclev10009015mscaffold_188228348826308J C_unshiu_00579:mRNA_6.1C_unshiu_005794650750108Plasma membraneAGI-0156.590
Af1371 ------TP Ciclev10005481mscaffold_92948865829491181
Af1372 ------TP Ciclev10009165mscaffold_12825430728257305
Af1373 ------TP Ciclev10028814mscaffold_814007551404988
Af1374 ------TP Ciclev10022450mscaffold_33909228539094629
Af1375 ------TP Ciclev10002846mscaffold_53698611336987382
Af1376 ------TP Ciclev10032383mscaffold_4428646432345
Af1377 ------TP Ciclev10001143mscaffold_53278033932783349J C_unshiu_00224:mRNA_50.1C_unshiu_00224297837300694Seryl-tRNA synthetase (Serin-tRNA ligase)AGI-0970.624
Af1378 ------TP Ciclev10016040mscaffold_23527368835277907
Af1379 ------TP Ciclev10026357mscaffold_734561053460607J C_unshiu_00301:mRNA_21.2C_unshiu_00301134429138770CBS domain-containing protein CBSX1, chloroplasticAGI-0268.467
Af1380 ------TP Ciclev10017148mscaffold_23476429434766390
Af1381 ------TP Ciclev10032242mscaffold_42461246324616531
Af1382 ------TP Ciclev10012786mscaffold_62426417724265636
Af1383 ------TP Ciclev10006002mscaffold_945244014525971
Af1384 ------
Af1385 ------TP Ciclev10002573mscaffold_53610605036109239
Af1386 ------TP Ciclev10028011mscaffold_831173373120914
Af1387 ------TP Ciclev10032517mscaffold_42267600822680724
Af1388 ------TP Ciclev10000833mscaffold_553098955315706
Af1389 ------TP Ciclev10020449mscaffold_34456576244567996
Af1390 ------TP Ciclev10021895mscaffold_31225417712259003
Af1391 ------
Af1392 ------TP Ciclev10008930mscaffold_110511551052947
Af1395 ------TP Ciclev10016067mscaffold_23565684535659383
Af1396 ------TP Ciclev10022545mscaffold_349206624923421J C_unshiu_00520:mRNA_16.2C_unshiu_00520166824167867Ribosomal protein L19 family proteinAGI-0528.041
Af1398 ------TP Ciclev10030393mscaffold_878993767902959J C_unshiu_00887:mRNA_6.1C_unshiu_008874912057547Hypothetical proteinAGI-0857.551
Af1399 ------TP Ciclev10030527mscaffold_41993195819937465
Af1400 ------TP Ciclev10024198mscaffold_33004214030047495
Af1401 ------TP Ciclev10022652mscaffold_34375376343756161
Af1402 ------TP Ciclev10029042mscaffold_878919257895996
Af1402b ------TP Ciclev10007310mscaffold_139410933948163
Af1403 ------TP Ciclev10002378mscaffold_52081848620821238
Af1404 ------TP Ciclev10014471mscaffold_21141833111422116
Af1405 ------TP Ciclev10032481mscaffold_42450383824505365J C_unshiu_00001:mRNA_238.1C_unshiu_0000115138111515209FH interacting protein 1AGI-0783.026
Af1406 ------TP Ciclev10009324mscaffold_1329071331103
Af1407 ------TP Ciclev10008782mscaffold_12822063728224080
Af1408 ------TP Ciclev10001178mscaffold_54144366741446709
Af1409 ------TP Ciclev10028349mscaffold_818789861885505
Af1410 ------TP Ciclev10012700mscaffold_62513125625133522
Af1411 ------TP Ciclev10016646mscaffold_22307319123078049
Af1412 ------TP Ciclev10012145mscaffold_62103591021038368
Af1413 ------TP Ciclev10009114mscaffold_145220224524821
Af1414 ------TP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorAGI-0350.895
Af1415 ------TP Ciclev10005717mscaffold_926031342605405J C_unshiu_00366:mRNA_20.1C_unshiu_00366130993132913Transmembrane BAX inhibitor motif-containing protein 4AGI-0316.667
Af1416 ------TP Ciclev10029140mscaffold_837386073741747J C_unshiu_00589:mRNA_10.1C_unshiu_00589131180134227Embryo defective 1273, putative isoform 1AGI-0868.834
Af1417 ------
Af1418 ------TP Ciclev10017186mscaffold_280608508062464
Af1419 ------TP Ciclev10000949mscaffold_53752910837534944
Af1420 ------TP Ciclev10032187mscaffold_41976228219765759
Af1421 ------TP Ciclev10005570mscaffold_92604750926048622
Af1422 ------TP Ciclev10002032mscaffold_54160958441613450
Af1423 ------TP Ciclev10028376mscaffold_82483265324835113
Af1424 ------TP Ciclev10008953mscaffold_11868887318690138J C_unshiu_00137:mRNA_44.1C_unshiu_00137354434355481CFE proteinAGI-0143.613
Af1425 ------TP Ciclev10028562mscaffold_8994687998018
Af1426 ------TP Ciclev10013333mscaffold_62049728920501732
Af1427 ------TP Ciclev10021942mscaffold_33696302636965935
Af1428 ------TP Ciclev10012183mscaffold_62224492422252231
Af1429 ------TP Ciclev10016644mscaffold_2390474395075
Af1430 ------TP Ciclev10000887mscaffold_53805902138064414
Af1431 ------TP Ciclev10019463mscaffold_31314518813150117
Af1432 ------TP Ciclev10032069mscaffold_42366678423669594J C_unshiu_00001:mRNA_103.1C_unshiu_00001659252662036UDP-galactose/UDP-glucose transporter 5BAGI-0772.828
Af1433 ------TP Ciclev10001084mscaffold_53948064739484776
Af1434 ------TP Ciclev10002119mscaffold_54234809342350470
Af1435 ------TP Ciclev10026292mscaffold_757476045748976
Af1436 ------TP Ciclev10014858mscaffold_259753675977280
Af1437 ------TP Ciclev10002114mscaffold_514743961479079J C_unshiu_00060:mRNA_37.1C_unshiu_00060309328313345Short-chain alcohol dehydrogenaseAGI-0992.804
Af1438 ------TP Ciclev10031620mscaffold_4642157644823
Af1439 ------TP Ciclev10003449mscaffold_51488827814889824
Af1440 ------TP Ciclev10014238mscaffold_23481707534823291
Af1441 ------TP Ciclev10015354mscaffold_22643554026438838
Af1442 ------TP Ciclev10032384mscaffold_42461035224612338
Af1443 ------TP Ciclev10011413mscaffold_62504839825053494J C_unshiu_00009:mRNA_3.1C_unshiu_000091576528846Pentatricopeptide repeat-containing family proteinAGI-0433.808
Af1444 ------TP Ciclev10009174mscaffold_136651413672863
Af1445 ------TP Ciclev10016776mscaffold_23288045632882923
Af1446 ------TP Ciclev10016974mscaffold_23043579030437278
Af1447 ------TP Ciclev10031155mscaffold_42280299522807340J C_unshiu_00004:mRNA_35.1C_unshiu_00004275820279748Aldehyde dehydrogenaseAGI-0770.744
Af1449 ------TP Ciclev10006216mscaffold_966975726699157
Af1450 ------TP Ciclev10014769mscaffold_268407436844063
Af1451 ------TP Ciclev10005663mscaffold_939617233964463
Af1452 ------TP Ciclev10018443mscaffold_355184575529974J C_unshiu_00900:mRNA_3.1C_unshiu_009002018630140Pheromone-processing carboxypeptidase kex1AGI-0529.863
Af1453 ------TP Ciclev10023068mscaffold_346632114664667J C_unshiu_01589:mRNA_7.1C_unshiu_015892906337936Hypothetical proteinAGI-0527.956
Af1454 ------TP Ciclev10029330mscaffold_81881310618814838
Af1455 ------TP Ciclev10012934mscaffold_61692788816930377
Af1456 ------TP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28AGI-0346.298
Af1457 ------TP Ciclev10011230mscaffold_61957817919583475
Af1458 ------
Af1459 ------TP Ciclev10009503mscaffold_11297260512977393
Af1460 ------TP Ciclev10025995mscaffold_787122538715371
Af1461 ------TP Ciclev10007728mscaffold_128515212854493
Af1462 ------TP Ciclev10012884mscaffold_62427403124276658J C_unshiu_00133:mRNA_50.1C_unshiu_00133274230284897Hypothetical proteinAGI-0437.527
Af1463 ------TP Ciclev10025935mscaffold_723900102391658
Af1464 ------TP Ciclev10031253mscaffold_432268683232418
Af1465 ------TP Ciclev10026722mscaffold_788986268899984
Af1466 ------TP Ciclev10022406mscaffold_328037852805325
Af1467 ------TP Ciclev10008651mscaffold_12417163224175378J C_unshiu_00047:mRNA_19.1C_unshiu_00047116658120038Putative amino acid permease 7AGI-0129.784
Af1468 ------TP Ciclev10028417mscaffold_82325704323262019
Af1469 ------TP Ciclev10028130mscaffold_82077906920782853
Af1470 ------TP Ciclev10023233mscaffold_34638026446381057NoAGI-0562.767
Af1471 ------TP Ciclev10022208mscaffold_397477759750640
Af1472 ------TP Ciclev10026852mscaffold_71742086117422787
Af1474 ------TP Ciclev10031886mscaffold_42124308521244983
Af1475 ------TP Ciclev10012178mscaffold_61486882114872700
Af1476 ------TP Ciclev10009256mscaffold_138629133866838
Af1477 ------TP Ciclev10016057mscaffold_23356148733563802
Af1478 ------TP Ciclev10009725mscaffold_145341614535260
Af1479 ------TP Ciclev10002189mscaffold_53269961032702689
Af1480 ------TP Ciclev10026531mscaffold_7782313784526
Af1481 ------TP Ciclev10009202mscaffold_117970601800274
Af1482 ------TP Ciclev10001945mscaffold_53655050736552800J C_unshiu_00657:mRNA_2.2C_unshiu_006572854130831DRE binding transcription factorAGI-0949.255
Af1483 ------TP Ciclev10026740mscaffold_755230755524475
Af1484 ------TP Ciclev10023136mscaffold_34288290942885640
Af1485a ------TP Ciclev10026552mscaffold_713817611382875
Af1485b ------TP Ciclev10012181mscaffold_689367058942681
Af1486 ------TP Ciclev10029576mscaffold_81751092617513265J C_unshiu_00962:mRNA_1.1C_unshiu_009624342684Prefoldin subunit 4AGI-0859.562
Af1487 ------TP Ciclev10028531mscaffold_81815548118157658J C_unshiu_00251:mRNA_22.1C_unshiu_00251205180207288DnaJAGI-0847.330
Af1488 ------TP Ciclev10020747mscaffold_349598264964659
Af1489 ------TP Ciclev10016302mscaffold_23607850136081245
Af1490 ------TP Ciclev10005113mscaffold_947427094745030
Af1491a ------TP Ciclev10017207mscaffold_22925805229260162
Af1491b ------TP Ciclev10029091mscaffold_82177798121780912
Af1492 ------TP Ciclev10031173mscaffold_42336541823370600
Af1493 ------
Af1494 ------TP Ciclev10017510mscaffold_22964450729646280
Af1495 ------TP Ciclev10032113mscaffold_42252309222528307J C_unshiu_00004:mRNA_77.1C_unshiu_00004548746553542UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3AGI-0769.544
Af1496 ------TP Ciclev10022757mscaffold_33290402332906262
Af1497 ------TP Ciclev10018482mscaffold_34570436145713084
Af1498 ------TP Ciclev10006723mscaffold_967663496768025J C_unshiu_00307:mRNA_26.2C_unshiu_00307212314218407Heterogeneous nuclear ribonucleoprotein 1AGI-0346.274
Af1499 ------TP Ciclev10011169mscaffold_62190555721908832J C_unshiu_00079:mRNA_39.1C_unshiu_00079273228275864BZIP transcription factor family proteinAGI-04
Af1500 ------TP Ciclev10022594mscaffold_31695742716959735
Af1501 ------TP Ciclev10028637mscaffold_81953813819541255
Af1502 ------TP Ciclev10015770mscaffold_22324392623246266
Af1503 ------TP Ciclev10009155mscaffold_12794366327947071
Af1504 ------TP Ciclev10002895mscaffold_524614062462911
Af1505 ------TP Ciclev10031326mscaffold_415312621535758J C_unshiu_00012:mRNA_96.1C_unshiu_00012704342708725Multiple inositol polyphosphate phosphatase 1AGI-0712.283
Af1506 ------TP Ciclev10019034mscaffold_389147448921411
Af1507a ------TP Ciclev10017265mscaffold_294545179456360
Af1507b ------TP Ciclev10025301mscaffold_72109823021102921
Af1508 ------TP Ciclev10011580mscaffold_62198304421991500J C_unshiu_00079:mRNA_48.1C_unshiu_00079328854336213Stomatal closure-related actin-binding protein 3AGI-041.342
Af1509 ------TP Ciclev10032314mscaffold_42356425123568956J C_unshiu_00001:mRNA_83.3C_unshiu_00001555659560336Hypersensitive-induced response protein 1AGI-0773.796
Af1510 ------TP Ciclev10010950mscaffold_61687127416876833
Af1511 ------TP Ciclev10001383mscaffold_53275955332763763
Af1512 ------TP Ciclev10008994mscaffold_193007829304559
Af1513 ------TP Ciclev10006024mscaffold_92952378629526379J C_unshiu_00056:mRNA_24.1C_unshiu_0005618128218315140S ribosomal protein S10AGI-0363.545
Af1514 ------TP Ciclev10026347mscaffold_71120396711205525
Af1515 ------TP Ciclev10027760mscaffold_82083805320844872J C_unshiu_00883:mRNA_4.1C_unshiu_0088360978104832Argonaute 1AGI-0840.438
Af1516 ------TP Ciclev10025736mscaffold_71587223615875783
Af1517 ------TP Ciclev10002357mscaffold_53109178231094489
Af1518 ------TP Ciclev10029379mscaffold_82191921521923184
Af1519 ------TP Ciclev10012646mscaffold_62341640423418629
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Af1521 ------TP Ciclev10004680mscaffold_997997469804461
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Af1526 ------TP Ciclev10001454mscaffold_53885254738855263
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Af1529 ------TP Ciclev10005711mscaffold_92122879121231253
Af1530 ------TP Ciclev10013041mscaffold_62009203320095946
Af1531 ------TP Ciclev10008796mscaffold_149843404987674
Af1532 ------TP Ciclev10026374mscaffold_739883663989679
Af1533 ------TP Ciclev10009600mscaffold_12211820322120791
Af1534 ------TP Ciclev10006429mscaffold_9883603885249
Af1535 ------TP Ciclev10007633mscaffold_12381411523817728
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Af1537 ------TP Ciclev10009797mscaffold_184171588419377
Af1538 ------TP Ciclev10002528mscaffold_53392198433926087
Af1539 ------TP Ciclev10016688mscaffold_21009730810100347
Af1540 ------TP Ciclev10006242mscaffold_9477388478920
Af1541 ------TP Ciclev10031567mscaffold_41051001810517939
Af1542 ------TP Ciclev10015820mscaffold_21042477910427904
Af1543 ------TP Ciclev10022165mscaffold_34218065042183843
Af1544 ------TP Ciclev10026596mscaffold_726229692624754
Af1545 ------TP Ciclev10032524mscaffold_421537182155194
Af1546 ------TP Ciclev10016821mscaffold_21240607812408794
Af1547 ------TP Ciclev10005907mscaffold_938647643867933
Af1548 ------TP Ciclev10012731mscaffold_62511421325116604
Af1549 ------TP Ciclev10009920mscaffold_121845132186967
Af1551 ------TP Ciclev10008489mscaffold_164949736502196
Af1552 ------TP Ciclev10005340mscaffold_93052706030531535
Af1553 ------TP Ciclev10023028mscaffold_34581258945815067
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Af1555 ------TP Ciclev10029189mscaffold_82450207024504031
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Af1558 ------TP Ciclev10005504mscaffold_92960846229612474
Af1559 ------TP Ciclev10005333mscaffold_922118622215512
Af1560 ------
Af1561 ------TP Ciclev10009643mscaffold_124203242423040
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Af1562b ------TP Ciclev10026749mscaffold_715307131532413
Af1564 ------TP Ciclev10015917mscaffold_22620663526210648
Af1565 ------TP Ciclev10008210mscaffold_12187502221879839
Af1566 ------TP Ciclev10011855mscaffold_61534613515348332
Af1567 ------TP Ciclev10016663mscaffold_22275934122763218
Af1568 ------J C_unshiu_00591:mRNA_15.1C_unshiu_00591108974112318Putative elongation factor 2-likeAGI-0124.954
Af1569 ------TP Ciclev10031754mscaffold_42319247223198396
Af1570 ------TP Ciclev10009899mscaffold_146015884603705
Af1571 ------TP Ciclev10010323mscaffold_12453306424536628
Af1572 ------TP Ciclev10027884mscaffold_82208423222091205
Af1573 ------TP Ciclev10026597mscaffold_71116335911165487
Af1574 ------TP Ciclev10011911mscaffold_61444465114447199
Af1575 ------TP Ciclev10029551mscaffold_81752483517526697J C_unshiu_02252:mRNA_4.1C_unshiu_0225279979032Photosystem II reaction center W proteinAGI-0856.724
Af1576 ------TP Ciclev10018636mscaffold_34156633841572373NoAGI-0547.986
Af1577 ------TP Ciclev10021651mscaffold_366029946605239
Af1578 ------TP Ciclev10023834mscaffold_34801606948017656
Af1579 ------TP Ciclev10006023mscaffold_97534878181
Af1580 ------TP Ciclev10016368mscaffold_23501384835015439J C_unshiu_00048:mRNA_76.1C_unshiu_00048512885514767NAD(P)-binding Rossmann-fold superfamily protein isoform 2AGI-0620.932
Af1581 ------TP Ciclev10024663mscaffold_32709241427093612
Af1583 ------TP Ciclev10006246mscaffold_92954972229551403
Af1584 ------TP Ciclev10026332mscaffold_71742421817426071
Af1585 ------TP Ciclev10026687mscaffold_734623533463444
Af1586 ------TP Ciclev10005733mscaffold_92311950223122347J C_unshiu_00148:mRNA_17.1C_unshiu_00148145165147922Glycoprotein family proteinAGI-0363.545
Af1587 ------TP Ciclev10022920mscaffold_33948338739486219
Af1588 ------TP Ciclev10028841mscaffold_867505036754741
Af1589 ------TP Ciclev10005524mscaffold_93099512930999295J C_unshiu_00003:mRNA_80.1C_unshiu_00003574672576940Peroxisomal 2,4-dienoyl-CoA reductaseAGI-0377.744
Af1590 ------TP Ciclev10017502mscaffold_293482929351074
Af1591 ------TP Ciclev10030412mscaffold_82367483323676979
Af1592 ------TP Ciclev10021425mscaffold_33759762437600961
Af1593 ------TP Ciclev10015971mscaffold_22773839727741912J C_unshiu_00745:mRNA_8.1C_unshiu_007458226585742Prolactin regulatory element-binding protein, putativeAGI-0661.501
Af1594 ------TP Ciclev10018838mscaffold_344011594407506
Af1595 ------TP Ciclev10022641mscaffold_390401819045543
Af1596 ------TP Ciclev10002542mscaffold_53796498937967950
Af1597 ------TP Ciclev10016480mscaffold_21348200513485923
Af1600 ------TP Ciclev10013134mscaffold_62275802722760875J C_unshiu_00038:mRNA_51.4C_unshiu_00038305110307864Negatively light-regulated proteinAGI-045.122
Af1601 ------TP Ciclev10026686mscaffold_742144234217517
Af1602 ------TP Ciclev10017370mscaffold_21335008213351899
Af1603 ------TP Ciclev10022774mscaffold_34297494742976794
Af1604 ------TP Ciclev10019587mscaffold_34713975647144124
Af1605 ------TP Ciclev10021314mscaffold_32629794926304739
Af1606 ------TP Ciclev10021248mscaffold_32489355124898675
Af1608 ------TP Ciclev10001692mscaffold_54229427042295612
Af1609 ------TP Ciclev10014451mscaffold_22453304424538470
Af1611 ------TP Ciclev10005702mscaffold_92271268822715627
Af1612 ------TP Ciclev10018748mscaffold_33078411930796076
Af1613 ------
Af1614 ------TP Ciclev10030819mscaffold_4204633209475
Af1615 ------TP Ciclev10001102mscaffold_53810866138114412
Af1616 ------TP Ciclev10014317mscaffold_22681759326820324
Af1617 ------TP Ciclev10014836mscaffold_2434537439663
Af1618 ------TP Ciclev10013090mscaffold_61439704714399928
Af1619 ------TP Ciclev10026784mscaffold_716086341610659J C_unshiu_00209:mRNA_18.2C_unshiu_00209147009148975Thioredoxin hAGI-0273.759
Af1620 ------TP Ciclev10026623mscaffold_72092263120924709
Af1621 ------TP Ciclev10004420mscaffold_91562673715638532
Af1622 ------TP Ciclev10008520mscaffold_11811726418119451J C_unshiu_00187:mRNA_23.3C_unshiu_00187141733143877Protochlorophyllide reductase, chloroplasticAGI-0154.754
Af1623 ------TP Ciclev10032683mscaffold_4612480615318J C_unshiu_01079:mRNA_2.2C_unshiu_0107931365814Thylakoid lumenal 15 kDa protein 1, chloroplasticAGI-077.907
Af1624 ------TP Ciclev10007512mscaffold_12492441624934675
Af1625 ------TP Ciclev10019825mscaffold_34894426148947832
Af1626 ------TP Ciclev10020385mscaffold_34720210947206941
Af1627 ------TP Ciclev10012518mscaffold_61419445414196761
Af1628 ------TP Ciclev10001249mscaffold_53480934534813138
Af1629 ------TP Ciclev10012332mscaffold_629695272973147J C_unshiu_00060:mRNA_62.1C_unshiu_00060539807543307Mitochondrial carnitine/acylcarnitine carrier protein CACLAGI-0739.420
Af1630 ------TP Ciclev10006127mscaffold_947024024704790
Af1631 ------TP Ciclev10015794mscaffold_23460919634614203
Af1632 ------TP Ciclev10006081mscaffold_9900723902354
Af1633 ------TP Ciclev10020304mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0767.201
Af1635 ------TP Ciclev10020874mscaffold_31851746918520307
Af1636 ------TP Ciclev10016216mscaffold_266118136619116J C_unshiu_00072:mRNA_53.1C_unshiu_00072416072423443Zinc transporter ZTP29AGI-06150.228
Af1637 ------TP Ciclev10008007mscaffold_11889616418901623
Af1638 ------TP Ciclev10004755mscaffold_92898497228989373J C_unshiu_00045:mRNA_79.1C_unshiu_00045556440562091TubulinAGI-0334.554
Af1639 ------TP Ciclev10012116mscaffold_62346248723466580J C_unshiu_00098:mRNA_36.1C_unshiu_00098239683243712Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1AGI-046.635
Af1640 ------TP Ciclev10005272mscaffold_92934236929345806
Af1641 ------TP Ciclev10021239mscaffold_33072184230725003
Af1642 ------TP Ciclev10015934mscaffold_23569324935696515
Af1643 ------TP Ciclev10021001mscaffold_338023873805494
Af1644 ------TP Ciclev10005467mscaffold_93110515831108119
Af1645 ------TP Ciclev10000427mscaffold_524728052477375J C_unshiu_00127:mRNA_11.1C_unshiu_001275220762775Class I (E and Q) tRNA synthetaseAGI-0990.878
Af1646 ------TP Ciclev10012239mscaffold_62512191925125183
Af1647 ------TP Ciclev10023615mscaffold_34953331849539442
Af1648 ------TP Ciclev10002024mscaffold_53455836234564638
Af1650 ------TP Ciclev10029248mscaffold_81927255119276355
Af1651 ------TP Ciclev10026767mscaffold_773130067315653
Af1653 ------TP Ciclev10002255mscaffold_53577694635779494
Af1654 ------TP Ciclev10020789mscaffold_33113356631137650
Af1655 ------TP Ciclev10020140mscaffold_34834813848351697
Af1656 ------TP Ciclev10031396mscaffold_424043532407969
Af1657 ------TP Ciclev10032070mscaffold_42258485222588013
Af1658 ------TP Ciclev10002760mscaffold_52616859426171673
Af1659 ------TP Ciclev10012047mscaffold_62191243821917736
Af1660 ------TP Ciclev10015583mscaffold_291648049166682
Af1662 ------TP Ciclev10021522mscaffold_34011621340124281
Af1663 ------TP Ciclev10031595mscaffold_42184132121845493
Af1666 ------TP Ciclev10019037mscaffold_330242953028262
Af1667 ------TP Ciclev10001644mscaffold_54245599442459424
Af1668 ------TP Ciclev10016828mscaffold_246604244661352
Af1669 ------TP Ciclev10021541mscaffold_34437108144373131
Af1670 ------TP Ciclev10011668mscaffold_61786790217874268
Af1671 ------TP Ciclev10016129mscaffold_22105708021059316
Af1672 ------TP Ciclev10004406mscaffold_919339271940744
Af1673 ------TP Ciclev10005691mscaffold_92974906329751434
Af1674 ------TP Ciclev10025184mscaffold_766398336644164
Af1675 ------TP Ciclev10024649mscaffold_327933652795811
Af1676 ------TP Ciclev10021429mscaffold_34142722141432461
Af1677 ------TP Ciclev10015358mscaffold_21548543715488234
Af1678 ------TP Ciclev10022810mscaffold_34319276243194352
Af1679 ------TP Ciclev10021896mscaffold_342601264262819J C_unshiu_00186:mRNA_34.1C_unshiu_00186288266290432Adenylate kinaseAGI-0529.035
Af1680 ------TP Ciclev10032474mscaffold_42091750920920961
Af1681 ------TP Ciclev10015215mscaffold_22316367323168238
Af1682 ------TP Ciclev10016706mscaffold_22015346020156597
Af1683 ------TP Ciclev10016632mscaffold_2475374478428
Af1684 ------TP Ciclev10022811mscaffold_31290146312904143
Af1685 ------TP Ciclev10023782mscaffold_34008698540089114J C_unshiu_00335:mRNA_9.1C_unshiu_003357616477436Hypothetical proteinAGI-0556.481
Af1686 ------TP Ciclev10028970mscaffold_823927632395622
Af1687 ------
Af1688 ------TP Ciclev10001114mscaffold_54287580342879044
Af1689 ------TP Ciclev10015519mscaffold_22876164928766750
Af1690 ------TP Ciclev10032651mscaffold_42392375723925178J C_unshiu_00001:mRNA_137.1C_unshiu_00001920379924128Hypothetical proteinAGI-0777.752
Af1691 ------TP Ciclev10006090mscaffold_9627373629617
Af1692 ------TP Ciclev10014767mscaffold_2691427698055
Af1693 ------TP Ciclev10016657mscaffold_23206914932072079J C_unshiu_00027:mRNA_31.2C_unshiu_00027205885208484DERLIN-2.2 isoform 1AGI-0635.794
Af1694 ------TP Ciclev10025863mscaffold_727035802705194
Af1695 ------TP Ciclev10008653mscaffold_12461912624621953
Af1697 ------TP Ciclev10028382mscaffold_814245511429767
Af1698 ------TP Ciclev10016574mscaffold_268801116883726
Af1699 ------TP Ciclev10014381mscaffold_269270816932080
Af1700 ------TP Ciclev10004322mscaffold_91850229318505531J C_unshiu_00138:mRNA_34.1C_unshiu_00138182719186200Putative receptor protein kinase TMK1AGI-0354.060
Af1752 ------TP Ciclev10009349mscaffold_1177116180417
Af1838 ------TP Ciclev10001534mscaffold_565997116604334
Af1883 ------TP Ciclev10008999mscaffold_12525575825259340
Af2001 ------TP Ciclev10007327mscaffold_12533768725347002
Af2022 ------TP Ciclev10002788mscaffold_599767579977512
Af2042 ------TP Ciclev10008181mscaffold_135214853525524
Af2075 ------TP Ciclev10032164mscaffold_42280120322802540
Af2143 ------TP Ciclev10010213mscaffold_1149283154945
Af2250 ------TP Ciclev10000615mscaffold_54306044243066562
Af2318 ------TP Ciclev10008753mscaffold_12522797825233897
Af2344 ------TP Ciclev10002506mscaffold_54305157943053394
Af2392 ------TP Ciclev10002611mscaffold_53920402539206398
Af2525 ------
Af2558 ------TP Ciclev10022119mscaffold_34974045449743754
Af2596 ------TP Ciclev10002840mscaffold_53815497538155769J C_unshiu_00319:mRNA_29.1C_unshiu_00319189073189599Basic blue proteinAGI-0957.830
Af2704 ------TP Ciclev10012216mscaffold_62113242721135018
Af2786 ------TP Ciclev10029628mscaffold_82054718020549390
Af2820 ------TP Ciclev10000836mscaffold_54243764342442753
Af2871 ------TP Ciclev10019876mscaffold_33006633930070903
Af2893 ------TP Ciclev10025356mscaffold_717394431743149J C_unshiu_01334:mRNA_6.1C_unshiu_013342586329359Putative mitochondrial chaperone BCS1-BAGI-0273.779
Af3016 ------TP Ciclev10025718mscaffold_773460317350895
Af3017 ------TP Ciclev10031492mscaffold_42440184124406470J C_unshiu_00001:mRNA_224.1C_unshiu_0000114157781420221Serine/threonine-protein kinase PBS1AGI-0783.217
Af3023 ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putativeAGI-0221.337
Af3039 ------TP Ciclev10000497mscaffold_585732818583459
Af3114 ------
Af3132 ------TP Ciclev10012712mscaffold_636548393656896
Af3142 ------TP Ciclev10032672mscaffold_494128649416686
Af3188 ------TP Ciclev10007898mscaffold_1448785452457
Af3215 ------TP Ciclev10009264mscaffold_12532207825323384
Af3218 ------TP Ciclev10005768mscaffold_92715479927158226
Af3244 ------TP Ciclev10002793mscaffold_584351238435971
Af3288 ------TP Ciclev10008476mscaffold_1385469388179
Af3392 ------TP Ciclev10013692mscaffold_61824877718250446
Af3400 ------TP Ciclev10002005mscaffold_54306809343070554
Af3466 ------
Af3471 ------TP Ciclev10002308mscaffold_51220183612206033
Af3599 ------TP Ciclev10008985mscaffold_12833081028332669
Af3712 ------
Af3785 ------TP Ciclev10025208mscaffold_759326645935568
Af3808 ------TP Ciclev10002466mscaffold_5176650180562
Af3822 ------TP Ciclev10004695mscaffold_954942545497030J C_unshiu_00164:mRNA_13.1C_unshiu_001647405975936Phosphate transporterAGI-0344.864
Al0001 ------J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0362.228JtR-03117.616
Al0003Al0003.2 ------TP Ciclev10024637mscaffold_34169705241697860J C_unshiu_01778:mRNA_2.1C_unshiu_017782736228139Dehydrin COR15AGI-0549.499
Al0004 ------TP Ciclev10011410mscaffold_62415711524161063
Al0005 ------TP Ciclev10016064mscaffold_23203236532035492
Al0006 ------TP Ciclev10030549mscaffold_428232002830227
Al0007 ------
Al0008 ------TP Ciclev10001908mscaffold_54031772140321609J C_unshiu_00054:mRNA_1.1C_unshiu_000545765867426S proteasome non-ATPase regulatory subunit 14SA-0950.699
Al0009 ------TP Ciclev10004753mscaffold_936889733692790
Al0011Al0010.2 ------TP Ciclev10012654mscaffold_61031699910318328J C_unshiu_00806:mRNA_1.2C_unshiu_008062130522892PolyubiquitinAGI-0346.768
Al0012 ------TP Ciclev10029110mscaffold_853247925326835
Al0013Al0012.2 ------TP Ciclev10029110mscaffold_853247925326835
Al0014 O-----SI058,SI153,SI312TP Ciclev10008225mscaffold_110703731072218J C_unshiu_00005:mRNA_43.1C_unshiu_00005281165283012CBL-interacting serine/threonine-protein kinase 20AGI-0197.525RP-013.295
Al0015 ------TP Ciclev10033914mscaffold_42507143125077010
Al0016 ------TP Ciclev10002413mscaffold_521895842190474
Al0017 ------
Al0018 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinRP-0823.447
Al0019 ------TP Ciclev10012798mscaffold_61173963411741636
Al0020 OOthers ------TP Ciclev10012552mscaffold_62336430323366061J C_unshiu_00098:mRNA_21.1C_unshiu_00098143026144827Allene oxide cyclaseKmG-04
Al0021 ------TP Ciclev10028327mscaffold_856920755697304
Al0022 ------TP Ciclev10011465mscaffold_62536431725368608J C_unshiu_00009:mRNA_62.1C_unshiu_00009346583350755Mitochondrial-processing peptidase subunit alphaSA-0942.503
Al0023 ------TP Ciclev10014721mscaffold_22747990727486732
Al0024.2 ------TP Ciclev10020911mscaffold_33786340737865625
Al0025 ------TP Ciclev10020434mscaffold_34858445548588112
Al0027 ------TP Ciclev10009909mscaffold_12478760024788444
Al0028 ------TP Ciclev10016123mscaffold_21160495611606340J C_unshiu_00957:mRNA_11.1C_unshiu_009573850839910Xyloglucan endotransglucosylase/hydrolase protein ARP-06.128.573
Al0029 Bno homozygous cultivar with minor allele O-----J C_unshiu_00305:mRNA_10.1C_unshiu_003056993873026Basic helix-loop-helix transcription factorAGI-0137.357JtR-01S50.000
Al0030 ------TP Ciclev10032368mscaffold_41842306318426424
Al0031 ------TP Ciclev10000645mscaffold_51353193713535930
Al0032 O-----TP Ciclev10020029mscaffold_35084105150845732
Al0034 ------TP Ciclev10032830mscaffold_41794454517945441
Al0035 ------TP Ciclev10028970mscaffold_823927632395622
Al0036 ------TP Ciclev10021716mscaffold_34157681341581730
Al0037 ------TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0037.2Al0037.k O-----TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0038 ------TP Ciclev10006081mscaffold_9900723902354
Al0039 ------J C_unshiu_00018:mRNA_107.1C_unshiu_00018723553725648Bifunctional protein FolDAGI-0595.305
Al0201 ULess informative for main cultivars ------TP Ciclev10014752mscaffold_23278083032782885J C_unshiu_00153:mRNA_49.1C_unshiu_00153346248348256Armadillo/beta-catenin-like repeat family protein, expressed
Al0202 ------TP Ciclev10005495mscaffold_91274084612745213
Al0203 ------TP Ciclev10000021mscaffold_53959330939602756
Al0204 ------TP Ciclev10008298mscaffold_1275263280936J C_unshiu_00003:mRNA_150.2C_unshiu_0000311278841133567Myosin heavy chain-like proteinJtR-09S5.527
Al0205 ------TP Ciclev10028714mscaffold_8324145327011
Al0206 AAvailable marker ----OOTP Ciclev10032727mscaffold_41230948012311438J C_unshiu_00365:mRNA_26.1C_unshiu_00365192643194502NADPH-dependent codeinone reductase-like proteinAGI-0738.565JtR-0752.611RP-0729.935
Al0207 OOthers ------TP Ciclev10020027mscaffold_343668024370111J C_unshiu_00186:mRNA_18.1C_unshiu_00186178635181547SNF1-related protein kinase regulatory subunit gamma-1AGI-0984.537JtR-09S9.929
Al0208 O-----TP Ciclev10001155mscaffold_54059727240598741
Al0209 HDisagree on Clementine haploid genotype ------TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical proteinKmG-0137.230JtR-01S88.382
Al0210 MDisagree by Marco analysis ------TP Ciclev10025724mscaffold_767471396750382J C_unshiu_00166:mRNA_28.1C_unshiu_00166205256208771Eukaryotic initiation factor 4A-10KmG-0234.998JtR-0215.126
Al0212 O-----TP Ciclev10026128mscaffold_752580455259521J C_unshiu_00288:mRNA_19.1C_unshiu_00288142758144183Mitochondrial uncoupling protein 3KmG-0243.821JtR-0230.507RP-08
Al0213 ------
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Al0221 ------
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Al0223 ------TP Ciclev10011771mscaffold_61743827017440122J C_unshiu_00008:mRNA_127.1C_unshiu_00008890026891371CBL-interacting serine/threonine-protein kinase 11RP-0417.965
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Al0225 ------TP Ciclev10001539mscaffold_54109372541097411J C_unshiu_01543:mRNA_6.1C_unshiu_015433410635343DNA glycosylase superfamily proteinKmG-019.277
Al0226 ------TP Ciclev10012002mscaffold_625719412573984
Al0227 ------TP Ciclev10001654mscaffold_54221793542222257
Al0228 ------TP Ciclev10009018mscaffold_12620606326208427J C_unshiu_00315:mRNA_25.1C_unshiu_00315212819220361Serine/threonine-protein kinase HT1JtR-0347.115
Al0229 ------TP Ciclev10018463mscaffold_34967535449684423
Al0230 ------
Al0231 ------TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609ShatterproofRP-06.17.272
Al0232 ------TP Ciclev10026186mscaffold_749970894999255
Al0234 OOthers ------TP Ciclev10005909mscaffold_913729721374927J C_unshiu_00369:mRNA_20.1C_unshiu_003697403474546Ribosomal protein L19KmG-0316.974NAT-0347.094RP-033.219
Al0235 ------TP Ciclev10009395mscaffold_12576157025764926
Al0236 ------TP Ciclev10014723mscaffold_23280656532812384
Al0237 ------TP Ciclev10026739mscaffold_755230755524475
Al0238 ------TP Ciclev10017077mscaffold_284943698496454
Al0239 Bno homozygous cultivar with minor allele ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putative
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Al0241 ------TP Ciclev10012288mscaffold_61785784917860063
Al0242 ------TP Ciclev10032030mscaffold_434375773441367
Al0243 ------TP Ciclev10013041mscaffold_62009203320095946
Al0244 ------TP Ciclev10015497mscaffold_298491339852098
Al0245 ------TP Ciclev10005107mscaffold_92518520025188839
Al0246 ------TP Ciclev10019351mscaffold_34421533344220917
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Al0248 ------TP Ciclev10028483mscaffold_81977979519784134
Al0249 ------TP Ciclev10004782mscaffold_93049033130496586
Al0250 ------TP Ciclev10031445mscaffold_42477075424773948
Al0251 ------TP Ciclev10021340mscaffold_366951716697430
Al0252 ------TP Ciclev10028251mscaffold_82468998924692884
Al0256 ------TP Ciclev10028637mscaffold_81953813819541255
Al0257Al0257.k ------TP Ciclev10008444mscaffold_12240741222409529
Al0301 ------TP Ciclev10022576mscaffold_34590687945907641
Al0302 AAvailable marker -O--OOSI090,SI311TP Ciclev10004372mscaffold_92507369325080376J C_unshiu_00119:mRNA_33.1C_unshiu_00119346131352710Putative seed imbibition proteinAGI-0348.375KmG-03218.339JtR-033NAT-033.773RP-0336.113
Al0303 ------TP Ciclev10029291mscaffold_82443106424433341
Al0304 MDisagree by Marco analysis ------SI259,SI293TP Ciclev10013536mscaffold_62261697922619271J C_unshiu_00038:mRNA_27.1C_unshiu_00038174815175255Nutrient reservoir, putativeAGI-0446.361KmG-0416.744NAT-04RP-0454.617
Al0305 ------TP Ciclev10021551mscaffold_34720005547201893
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Al0309 AAvailable marker O----OTP Ciclev10022019mscaffold_34490005944900865J C_unshiu_00069:mRNA_47.1C_unshiu_00069301188317479Hypothetical proteinKmG-05S73.967JtR-0538.749RP-0586.332
Al0310Al0309.2 ------TP Ciclev10022019mscaffold_34490005944900865
Al0311 ------TP Ciclev10020637mscaffold_354563365459361
Al0312 ------TP Ciclev10021037mscaffold_341449394148359
Al0313 AAvailable marker O---OOTP Ciclev10011272mscaffold_62396603923969583J C_unshiu_00133:mRNA_4.2C_unshiu_001332248526003Putative phosphatidylinositol 4-kinase type 2-betaAGI-0438.152KmG-049.748
Al0314 ------TP Ciclev10009591mscaffold_125747692577568
Al0315 ------TP Ciclev10028656mscaffold_849053414909930
Al0316 O-----TP Ciclev10021599mscaffold_34091814840922656
Al0317 ------TP Ciclev10021392mscaffold_330062183008357J C_unshiu_00092:mRNA_60.1C_unshiu_00092425854427887CASP-like protein 4A2KmG-05S16.871JtR-059.525
Al0318Al0318.2 AAvailable marker -----OTP Ciclev10021392mscaffold_330062183008357
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Al0320 ------TP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Al0320.2Al0320.em AAvailable marker -----OTP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Al0321.2 MDisagree by Marco analysis ------TP Ciclev10020878mscaffold_3541575543121
Al0322 ------TP Ciclev10002194mscaffold_53480135234804440
Al0323 OOthers ------TP Ciclev10012875mscaffold_61818813918189060
Al0324 MDisagree by Marco analysis ------TP Ciclev10029315mscaffold_82042428720425903J C_unshiu_00320:mRNA_1.2C_unshiu_003201275814314Hypothetical proteinAGI-0841.127NAT-08231.019RP-0817.081
Al0325 ------
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Al0327Al0326.2 ------TP Ciclev10022558mscaffold_364093116411254
Al0328 ------TP Ciclev10006155mscaffold_92995200529956306
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Al0330 ------TP Ciclev10009377mscaffold_174554927457451
Al0331 AAvailable marker -----OTP Ciclev10033190mscaffold_484066328407188J C_unshiu_00111:mRNA_9.1C_unshiu_001118353184087Hypothetical proteinKmG-099.593JtR-0752.611RP-0719.079
Al0332 ------TP Ciclev10032086mscaffold_41489572814896991
Al0333 ------TP Ciclev10004130mscaffold_939545073961401
Al0334 ------TP Ciclev10008488mscaffold_11811394918117209
Al0335 ------TP Ciclev10021844mscaffold_361312146135849
Al0336 ------TP Ciclev10001109mscaffold_53591738435925361
Al0337 ------TP Ciclev10025556mscaffold_764374066440864
Al0401 OOthers O-----TP Ciclev10025346mscaffold_71318056713191638J C_unshiu_01698:mRNA_6.1C_unshiu_016983933640206Hypothetical proteinKmG-0226.204JtR-02-6.043NAT-02S22.960
Al0402 AAvailable marker O---OOJ C_unshiu_00008:mRNA_88.1C_unshiu_00008564906567158Peptide upstream ORF protein, putativeAGI-0881.190KmG-0444.163NAT-0428.388
Al0403 ------TP Ciclev10007559mscaffold_12680278726810465
Al0404 ------TP Ciclev10025902mscaffold_740157354020920
Al0405 ------TP Ciclev10024622mscaffold_33002199830023908
Al0406 ------
Al0407 AAvailable marker O---OOTP Ciclev10009315mscaffold_12657605926578193J C_unshiu_00131:mRNA_17.1C_unshiu_0013112115212318360S ribosomal protein L7AGI-0131.240KmG-0115.673JtR-01S57.666RP-0179.425
Al0408 O-----TP Ciclev10031487mscaffold_42373775723740513J C_unshiu_00001:mRNA_109.1C_unshiu_00001727392729266F-box/kelch-repeat protein SKIP11AGI-0775.917KmG-0713.235JtR-071.788
Al0409 Bno homozygous cultivar with minor allele O-----SI201,SI252TP Ciclev10024949mscaffold_750425085046271NoAGI-0250.758KmG-0244.930JtR-0229.462NAT-02S90.742
Al0410 ------TP Ciclev10026113mscaffold_777397827742295
Al0411 AAvailable marker O---OOTP Ciclev10029439mscaffold_81976007719761961J C_unshiu_00011:mRNA_19.2C_unshiu_00011188649189649Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0840.857
Al0412 ------TP Ciclev10023374mscaffold_32561274125615635
Al0413 AAvailable marker ---OOOSI275,SI299TP Ciclev10004620mscaffold_975799007583093J C_unshiu_00063:mRNA_61.1C_unshiu_00063483279486427Chloroplast beta-amylase 3AGI-0346.197KmG-03219.570JtR-03110.395RP-0333.559
Al0414 ------TP Ciclev10014243mscaffold_23477523234780330
Al0415 AAvailable marker ----OOSI120,SI310TP Ciclev10004660mscaffold_927329002738896J C_unshiu_00040:mRNA_76.1C_unshiu_00040632823638463Mitogen-activated protein kinase 14AGI-0324.885KmG-031NAT-0341.576
Al0416 OOthers ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00639:mRNA_12.1C_unshiu_006399069899467Elongation factor 1-alphaAGI-0823.023JtR-0760.405NAT-08221.126
Al0417 MDisagree by Marco analysis O-----SI244,SI255TP Ciclev10015483mscaffold_23521269135214865J C_unshiu_00048:mRNA_50.1C_unshiu_00048328418330513Kelch repeat-containing F-box family proteinAGI-0620.297KmG-0662.256NAT-06S56.647
Al0418 ------TP Ciclev10004717mscaffold_92776551527767561
Al0419 OOthers O-----TP Ciclev10005894mscaffold_924528532455181J C_unshiu_00394:mRNA_25.1C_unshiu_00394150531152208Hypothetical proteinAGI-0317.378KmG-099.593JtR-09S7.976
Al0420 ------TP Ciclev10011827mscaffold_62306802623072168
Al0421 OOthers ------TP Ciclev10011875mscaffold_61178295211785527
Al0422 T3 or more alleleic model O-----TP Ciclev10013176mscaffold_61449547314496662J C_unshiu_00032:mRNA_34.1C_unshiu_00032369423370581Subtilisin inhibitor 1, putativeAGI-0893.695
Al0423Al0422.2 ------TP Ciclev10013176mscaffold_61449547314496662
Al0424 ------TP Ciclev10005576mscaffold_92549337825500370
Al0425 ------TP Ciclev10013630mscaffold_612907091292040
Al0426 ------TP Ciclev10007391mscaffold_111288971137063
Al0427Al0247.em ------TP Ciclev10016829mscaffold_22369588123697100
Al0501 Bno homozygous cultivar with minor allele ------TP Ciclev10012221mscaffold_61462588414628443J C_unshiu_00032:mRNA_48.1C_unshiu_00032462609490932Tropinone reductase I
Al0502 ------TP Ciclev10011657mscaffold_62146433521470434
Al0503 ------TP Ciclev10011469mscaffold_62123690321242261
Al0504 ------TP Ciclev10015664mscaffold_23527368835277908
Al0505 ------TP Ciclev10032306mscaffold_4947943949892J C_unshiu_00012:mRNA_14.1C_unshiu_00012117194125051Plasma membrane intrinsic proteinRP-0751.815
Al0506 ------TP Ciclev10005101mscaffold_93083643530841216
Al0507 ------TP Ciclev10002395mscaffold_51728972317290702
Al0508 ------TP Ciclev10017102mscaffold_23592018635922196
Al0509 ------TP Ciclev10001812mscaffold_53986276239864726
Al0510 ------TP Ciclev10008176mscaffold_12279292022795069
Al0511 ------TP Ciclev10020158mscaffold_32505342525057795
Al0512 ------TP Ciclev10026719mscaffold_742807124281481
Al0513 OOthers ------TP Ciclev10009222mscaffold_180461818049306J C_unshiu_00191:mRNA_21.1C_unshiu_00191243988246458Stem 28 kDa glycoproteinAGI-0160.031KmG-0141.591
Al0514 ULess informative for main cultivars ------TP Ciclev10012145mscaffold_62103591021038368J C_unshiu_00052:mRNA_38.1C_unshiu_00052265461267883Fructose-bisphosphate aldolase, cytoplasmic isozymeKmG-0432.217
Al0515 Bno homozygous cultivar with minor allele O-----SI178TP Ciclev10030023mscaffold_826731352674232J C_unshiu_00152:mRNA_38.1C_unshiu_00152273851275034DNA-damage-repair/toleration protein DRT100AGI-0873.663JtR-0814.154NAT-08110.596
Al0516 ------TP Ciclev10019134mscaffold_359810665985524
Al0517 AAvailable marker ----OOTP Ciclev10028293mscaffold_825724392574295J C_unshiu_00363:mRNA_1.1C_unshiu_0036358927583Limonoid glucosyltransferaseAGI-0874.016JtR-0815.435
Al0518 ------TP Ciclev10011450mscaffold_62330638623311678
Al0519 DDominant marker O-----TP Ciclev10015260mscaffold_21583314215836770NoRP-06.1
Al0520 ------TP Ciclev10026756mscaffold_783106158313304
Al0521 ------TP Ciclev10029787mscaffold_82313675323137537
Al0522 ------TP Ciclev10008765mscaffold_12108290221086082
Al0523 ------TP Ciclev10009349mscaffold_1177116180417