Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Fb0364		AAvailable marker	-	-	-	-	O	O	SI373	Ciclev10022215m	scaffold_3	13810497	13813004	C_unshiu_00542:mRNA_3.1	C_unshiu_00542	15940	18433	Nascent polypeptide-associated complex subunit alpha-like protein	AGI-05	41.306	KmG-05S	55.482	JtR-05	39.609			RP-05	56.834
Tf0168		AAvailable marker	O	O	-	O	O	O	SI175	Ciclev10007563m	scaffold_1	24898769	24905716	C_unshiu_00341:mRNA_22.1	C_unshiu_00341	170777	178753	AT-rich interactive domain-containing protein 4	AGI-01	25.752
Al0224		AAvailable marker	-	O	-	-	O	O		Ciclev10015872m	scaffold_2	26630154	26632900	C_unshiu_00262:mRNA_19.1	C_unshiu_00262	115955	118351	Probable xyloglucan endotransglucosylase/hydrolase protein 27	AGI-06	67.116	KmG-06	17.100	JtR-06S	3.805	NAT-06S	8.025	RP-06.1	28.576
Tf0454		AAvailable marker	O	-	-	-	O	O		Ciclev10027306m	scaffold_7	16108723	16113463	C_unshiu_00371:mRNA_10.1	C_unshiu_00371	121418	127245	GATA transcription factor	AGI-02	21.099
Cp1162		AAvailable marker	-	-	-	-	O	O		Ciclev10001345m	scaffold_5	35908181	35912917	C_unshiu_00255:mRNA_35.1	C_unshiu_00255	260170	264872	Phosphoribosylaminoimidazolesuccinocarboxamide synthase	AGI-09	53.232							RP-09	69.673
Ov0314		AAvailable marker	O	-	-	-	O	O	SI107	Ciclev10029386m	scaffold_8	8176371	8177435	C_unshiu_00728:mRNA_1.1	C_unshiu_00728	4070	4922	Mannan polymerase complex subunit mnn9	AGI-08	56.724	KmG-08	58.356	JtR-08	21.829			RP-08	41.217
Tf0184		AAvailable marker	O	-	-	-	O	O		Ciclev10019968m	scaffold_3	45393857	45398298	C_unshiu_00546:mRNA_8.1	C_unshiu_00546	75023	78260	Zinc finger CCCH domain-containing protein 3	AGI-05	57.948
Vs0003		AAvailable marker	-	-	-	-	O	O	SI077					C_unshiu_00009:mRNA_117.1	C_unshiu_00009	675718	677501	Cysteine proteinase RD19a	AGI-09	35.312	KmG-09	72.447			NAT-09	93.467
Lp0041		AAvailable marker	-	-	-	-	-	O		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28			KmG-032	17.549	JtR-031	14.643			RP-03	29.608
Cp1216		AAvailable marker	-	-	-	-	O	O		Ciclev10017113m	scaffold_2	12112790	12113903	C_unshiu_00026:mRNA_6.1	C_unshiu_00026	46658	47677	CCR protein	AGI-06	76.905
Al0240		AAvailable marker	-	-	-	-	O	O		Ciclev10028497m	scaffold_8	8033465	8038415	C_unshiu_00682:mRNA_9.1	C_unshiu_00682	59786	63447	Hypothetical protein	AGI-08	53.867
Ov0324		AAvailable marker	-	-	-	-	-	O		Ciclev10030198m	scaffold_8	22575845	22578398	C_unshiu_01619:mRNA_6.1	C_unshiu_01619	15139	24519	Hypothetical protein			KmG-08	23.615
Tf0198		AAvailable marker	O	-	-	-	-	O		Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7
Ov0403		AAvailable marker	O	-	-	-	O	O	SI136,SI298,SI325	Ciclev10016280m	scaffold_2	23891814	23893095	C_unshiu_00081:mRNA_50.1	C_unshiu_00081	296655	297936	Chlorophyll a/b binding protein	AGI-06	61.779	KmG-06	12.610	JtR-06S
Ov0404		AAvailable marker	-	-	-	-	-	O		Ciclev10002415m	scaffold_5	29768091	29769281	C_unshiu_00731:mRNA_6.3	C_unshiu_00731	26598	28767	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase			KmG-09	29.016	JtR-09S	31.495			RP-09	29.347
Vt0001		AAvailable marker	-	-	-	-	O	O		Ciclev10014290m	scaffold_2	35624935	35628855	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-06	16.327	KmG-06	68.041
Cp1279		AAvailable marker	-	-	-	-	O	O		Ciclev10031414m	scaffold_4	12900777	12903692	C_unshiu_00461:mRNA_17.1	C_unshiu_00461	144878	147555	Ornithine aminotransferase	AGI-07	40.184
Lp0108		AAvailable marker	-	-	-	-	-	O		Ciclev10026340m	scaffold_7	5554619	5556993	C_unshiu_00761:mRNA_5.1	C_unshiu_00761	18704	21072	40S ribosomal protein S6			KmG-02	41.508	JtR-02	18.351
Ov0407		AAvailable marker	-	-	-	-	O	O		Ciclev10000563m	scaffold_5	37043417	37051080	C_unshiu_00773:mRNA_1.1	C_unshiu_00773	7888	15416	OSBP(Oxysterol binding protein)-related protein 1C isoform 3	AGI-09	46.097	KmG-09	48.606	JtR-09S	66.176			RP-09	76.027
Ov0408		AAvailable marker	-	-	-	-	-	O		Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_00248:mRNA_30.1	C_unshiu_00248	247183	248778	UDP-glycosyltransferase 71C4			KmG-04	50.902					RP-04	23.745
Cp1308		AAvailable marker	-	O	-	-	O	O		Ciclev10011420m	scaffold_6	6329421	6335005	C_unshiu_00147:mRNA_29.1	C_unshiu_00147	247701	253232	Unspecific monooxygenase	AGI-04	101.201
Lp0112		AAvailable marker	O	-	-	-	-	-		Ciclev10032923m	scaffold_4	3749809	3751724	C_unshiu_00236:mRNA_28.1	C_unshiu_00236	161422	163318	ATP synthase subunit d, mitochondrial	AGI-07	19.603							RP-07	50.962
Al0302		AAvailable marker	-	O	-	-	O	O	SI090,SI311	Ciclev10004372m	scaffold_9	25073693	25080376	C_unshiu_00119:mRNA_33.1	C_unshiu_00119	346131	352710	Putative seed imbibition protein	AGI-03	48.375	KmG-032	18.339	JtR-033		NAT-03	3.773	RP-03	36.113
Vt0011		AAvailable marker	-	-	-	-	O	O		Ciclev10021162m	scaffold_3	12984411	12986574	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-05	41.306			JtR-05	37.780
Cp1361		AAvailable marker	-	-	-	-	O	O		Ciclev10013042m	scaffold_6	21714716	21717652	C_unshiu_01167:mRNA_14.1	C_unshiu_01167	79036	81808	50S ribosomal 5 alpha, chloroplastic	AGI-04	52.740
Lp0119		AAvailable marker	-	-	-	-	O	O	SI276	Ciclev10028631m	scaffold_8	24315720	24317671	C_unshiu_00021:mRNA_65.1	C_unshiu_00021	426040	431920	Hypothetical protein	AGI-08	8.544
Ov0419		AAvailable marker	-	-	-	-	-	O		Ciclev10011593m	scaffold_6	16709179	16712039	C_unshiu_00008:mRNA_31.2	C_unshiu_00008	178086	180944	Pyruvate decarboxylase									RP-04	11.143
Cp1366		AAvailable marker	-	-	-	-	-	O
Al0309		AAvailable marker	O	-	-	-	-	O		Ciclev10022019m	scaffold_3	44900059	44900865	C_unshiu_00069:mRNA_47.1	C_unshiu_00069	301188	317479	Hypothetical protein			KmG-05S	73.967	JtR-05	38.749			RP-05	86.332
Ov0422		AAvailable marker	-	-	-	-	-	O		Ciclev10016314m	scaffold_2	11071587	11074479	C_unshiu_00184:mRNA_33.1	C_unshiu_00184	295953	298736	14-3-3-like protein GF14 mu									RP-06.1	28.576
Al0313		AAvailable marker	O	-	-	-	O	O		Ciclev10011272m	scaffold_6	23966039	23969583	C_unshiu_00133:mRNA_4.2	C_unshiu_00133	22485	26003	Putative phosphatidylinositol 4-kinase type 2-beta	AGI-04	38.152	KmG-04	9.748
Cp1427		AAvailable marker	-	-	-	-	O	O		Ciclev10021746m	scaffold_3	45576863	45579197	C_unshiu_00326:mRNA_5.1	C_unshiu_00326	23073	25265	Bifunctional protein FolD	AGI-05	58.917
Lp0126		AAvailable marker	O	-	-	-	O	O		Ciclev10025164m	scaffold_7	3946818	3949964	C_unshiu_00801:mRNA_10.1	C_unshiu_00801	97228	100216	Phototropic-responsive NPH3 family protein	AGI-02	65.295	KmG-02	54.892	JtR-02	26.278			RP-02.2
Tf0226		AAvailable marker	O	-	-	-	-	O		Ciclev10008836m	scaffold_1	526813	529150	C_unshiu_00129:mRNA_32.1	C_unshiu_00129	303106	311407	Exocyst subunit EXO70 family protein									RP-01	1.100
Tf0227		AAvailable marker	O	-	-	-	O	O		Ciclev10031750m	scaffold_4	21666061	21671693	C_unshiu_00010:mRNA_30.1	C_unshiu_00010	183508	188843	Trihelix transcription factor GT-1	AGI-08	35.927
Al0318	Al0318.2	AAvailable marker	-	-	-	-	-	O		Ciclev10021392m	scaffold_3	3006218	3008357
Al0320.2	Al0320.em	AAvailable marker	-	-	-	-	-	O		Ciclev10020878m	scaffold_3	541575	543121	C_unshiu_01206:mRNA_1.1	C_unshiu_01206	4346	5819	Phosphoenolpyruvate carboxylase family protein					JtR-05	23.890
Ov0505		AAvailable marker	-	-	-	-	-	O		Ciclev10031252m	scaffold_4	16626338	16629094	C_unshiu_00250:mRNA_14.1	C_unshiu_00250	82573	84397	Tyrosine decarboxylase			KmG-07	53.887	JtR-07	48.672	NAT-07	3.814
Ov0507		AAvailable marker	-	-	-	-	-	O		Ciclev10031860m	scaffold_4	642157	644823
Gn0009		AAvailable marker	-	-	-	-	O	O											AGI-04	57.369	KmG-04	27.843
Al0326		AAvailable marker	-	-	-	O	O	-	SI065,SI344	Ciclev10022558m	scaffold_3	6409311	6411254	C_unshiu_00443:mRNA_7.1	C_unshiu_00443	62532	64193	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-05	42.609	KmG-05S	32.841	JtR-05	16.025			RP-05	27.235
Cp1523		AAvailable marker	-	-	-	-	O	O		Ciclev10005519m	scaffold_9	1356758	1359310	C_unshiu_01431:mRNA_7.1	C_unshiu_01431	31518	37086	Hypothetical protein	AGI-03	12.606
Al0329		AAvailable marker	O	-	-	-	O	O	SI185	Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.162	KmG-02	11.218	JtR-02	7.174	NAT-02S	5.552	RP-02	8.191
Wy0003		AAvailable marker	O	-	-	-	O	O		Ciclev10001202m	scaffold_5	37189653	37192231	C_unshiu_00144:mRNA_30.1	C_unshiu_00144	215223	217733	Aminotransferase	AGI-09	46.823	KmG-09	52.581			NAT-09	69.467
Al0331		AAvailable marker	-	-	-	-	-	O		Ciclev10033190m	scaffold_4	8406632	8407188	C_unshiu_00111:mRNA_9.1	C_unshiu_00111	83531	84087	Hypothetical protein			KmG-09	9.593	JtR-07	52.611			RP-07	19.079
Cp1584		AAvailable marker	-	-	-	-	-	O		Ciclev10031523m	scaffold_4	201556	204527	C_unshiu_00168:mRNA_36.1	C_unshiu_00168	285304	287905	Cell division cycle 20.1, cofactor of APC complex
Gn0021		AAvailable marker	-	-	-	-	O	O		Ciclev10000597m	scaffold_5	39630111	39635609	C_unshiu_01033:mRNA_10.1	C_unshiu_01033	47799	53166	Somatic embryogenesis receptor kinase 1	AGI-09	42.621	KmG-09	68.220	JtR-09S	97.453	NAT-09	83.381
Gn0029		AAvailable marker	-	-	-	-	-	O
Tf0250		AAvailable marker	O	-	-	-	O	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A	AGI-08	73.105
Al0402		AAvailable marker	O	-	-	-	O	O						C_unshiu_00008:mRNA_88.1	C_unshiu_00008	564906	567158	Peptide upstream ORF protein, putative	AGI-08	81.190	KmG-04	44.163			NAT-04	28.388
Cp1598		AAvailable marker	-	-	-	-	O	O		Ciclev10021001m	scaffold_3	3802387	3805494	C_unshiu_00849:mRNA_13.2	C_unshiu_00849	72935	75824	31 kDa ribonucleoprotein	AGI-05	12.715
Al0407		AAvailable marker	O	-	-	-	O	O		Ciclev10009315m	scaffold_1	26576059	26578193	C_unshiu_00131:mRNA_17.1	C_unshiu_00131	121152	123183	60S ribosomal protein L7	AGI-01	31.240	KmG-01	15.673	JtR-01S	57.666			RP-01	79.425
Cp1624		AAvailable marker	-	O	-	O	O	O	SI307	Ciclev10008537m	scaffold_1	18068297	18070262	C_unshiu_00187:mRNA_17.1	C_unshiu_00187	99220	100762	CBS domain-containing protein CBSX5	AGI-01	58.420	KmG-01	53.054
Cp1627		AAvailable marker	-	-	-	-	O	O		Ciclev10022024m	scaffold_3	13309398	13310636	C_unshiu_00431:mRNA_6.1	C_unshiu_00431	44507	45451	Chloroplast small heat shock protein	AGI-05	41.272
Wy0018		AAvailable marker	-	-	-	-	O	O		Ciclev10021374m	scaffold_3	5318874	5321054	C_unshiu_00442:mRNA_14.1	C_unshiu_00442	123398	125451	Homeobox-leucine zipper protein HAT3	AGI-05	29.033	KmG-05S	20.128	JtR-05	19.008
Gn0040		AAvailable marker	-	-	-	-	O	O	SI015,SI337	Ciclev10033176m	scaffold_4	16232756	16233365	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	43.542	KmG-07	56.094	JtR-07	48.672
Gn0041		AAvailable marker	-	-	-	-	-	O						C_unshiu_00123:mRNA_16.1	C_unshiu_00123	116817	119061	Homeobox-leucine zipper protein HAT5			KmG-05S	9.772	JtR-05	28.396
Tf0259		AAvailable marker	O	-	-	-	O	O		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-02	67.666
Al0411		AAvailable marker	O	-	-	-	O	O		Ciclev10029439m	scaffold_8	19760077	19761961	C_unshiu_00011:mRNA_19.2	C_unshiu_00011	188649	189649	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-08	40.857
Al0413		AAvailable marker	-	-	-	O	O	O	SI275,SI299	Ciclev10004620m	scaffold_9	7579900	7583093	C_unshiu_00063:mRNA_61.1	C_unshiu_00063	483279	486427	Chloroplast beta-amylase 3	AGI-03	46.197	KmG-032	19.570	JtR-031	10.395			RP-03	33.559
Al0415		AAvailable marker	-	-	-	-	O	O	SI120,SI310	Ciclev10004660m	scaffold_9	2732900	2738896	C_unshiu_00040:mRNA_76.1	C_unshiu_00040	632823	638463	Mitogen-activated protein kinase 14	AGI-03	24.885	KmG-031				NAT-03	41.576
Tf0264		AAvailable marker	O	-	-	-	O	O		Ciclev10015873m	scaffold_2	248256	250675	C_unshiu_00109:mRNA_29.1	C_unshiu_00109	175776	179005	GAN	AGI-06	103.728
Gn0048		AAvailable marker	-	O	-	-	O	O	SI289	Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7	AGI-07	74.225	KmG-07	7.964	JtR-07	4.200
Tf0001.2		AAvailable marker	O	O	O	-	O	O		Ciclev10020248m	scaffold_3	8647529	8652282	C_unshiu_00580:mRNA_10.1	C_unshiu_00580	75118	81473	Transcription factor BIM1	AGI-05	41.893
Cp1697		AAvailable marker	-	-	-	-	O	O		Ciclev10028645m	scaffold_8	966124	968846	C_unshiu_00041:mRNA_89.1	C_unshiu_00041	555334	558046	Urease accessory protein UreH	AGI-02	73.770
Tf0267		AAvailable marker	O	-	-	-	O	O		Ciclev10031834m	scaffold_4	12571526	12575185	C_unshiu_00847:mRNA_8.1	C_unshiu_00847	48651	52296	Squamosa promoter-binding-like protein 13	AGI-07	37.800
Tf0268		AAvailable marker	O	-	-	-	O	O		Ciclev10021157m	scaffold_3	10140904	10142752	C_unshiu_00149:mRNA_29.1	C_unshiu_00149	326478	328059	Transcription factor MYB21	AGI-05	43.800
Wy0028		AAvailable marker	-	-	-	-	O	O		Ciclev10007806m	scaffold_1	25001341	25004726	C_unshiu_00150:mRNA_3.1	C_unshiu_00150	18652	22079	Probable pectinesterase/pectinesterase inhibitor 61	AGI-01	26.171	KmG-01
Cp1709		AAvailable marker	-	-	-	-	-	O		Ciclev10025382m	scaffold_7	1450748	1452915	C_unshiu_00624:mRNA_14.1	C_unshiu_00624	137579	139378	Cytochrome P450 84A1
Gn0051		AAvailable marker	-	-	-	-	O	O	SI306,SI366	Ciclev10011780m	scaffold_6	24082263	24084635	C_unshiu_00133:mRNA_13.1	C_unshiu_00133	63870	65165	Protein UNUSUAL FLORAL ORGANS	AGI-04	39.510	KmG-04	0.447
Tf0005.2		AAvailable marker	O	-	-	-	-	O		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog
Wy0030		AAvailable marker	O	-	-	-	O	O		Ciclev10001854m	scaffold_5	36229310	36230518	C_unshiu_00619:mRNA_10.1	C_unshiu_00619	87213	88404	EXORDIUM like 2	AGI-09	53.205	KmG-09	44.154	JtR-09S	63.577	NAT-09	65.585
Cp1716		AAvailable marker	-	-	-	-	O	O		Ciclev10026303m	scaffold_7	2607670	2609433	C_unshiu_00025:mRNA_77.1	C_unshiu_00025	553145	554831	Thiol disulfide interchange protein	AGI-02	70.068
Tf0275		AAvailable marker	O	-	-	-	O	O		Ciclev10006256m	scaffold_9	955176	957425	C_unshiu_00249:mRNA_31.1	C_unshiu_00249	191274	194861	Transposon protein, putative, Mutator sub-class	AGI-03	11.501
Cp1738		AAvailable marker	-	-	-	-	-	O	SI237,SI296	Ciclev10025941m	scaffold_7	5388458	5389981	C_unshiu_00303:mRNA_12.1	C_unshiu_00303	100918	102276	Putative clathrin assembly protein
Tf0012		AAvailable marker	-	-	-	-	O	O		Ciclev10018673m	scaffold_3	37601493	37607586	C_unshiu_00502:mRNA_21.1	C_unshiu_00502	155419	162660	Protein NLP8	AGI-05	47.173
Wy0039		AAvailable marker	-	-	-	-	O	O		Ciclev10028965m	scaffold_8	18824262	18825514	C_unshiu_00459:mRNA_4.1	C_unshiu_00459	34475	34918	Hypothetical protein	AGI-08	45.276			JtR-08	16.276
Wy0040		AAvailable marker	O	-	-	-	-	O		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00001:mRNA_217.1	C_unshiu_00001	1378378	1380557	Hypothetical protein			KmG-04	12.855
Cp1798		AAvailable marker	-	-	-	-	O	O		Ciclev10012134m	scaffold_6	20319677	20323198	C_unshiu_00215:mRNA_34.1	C_unshiu_00215	205164	208490	Orange 2	AGI-04	60.291
Mf0003		AAvailable marker	-	-	-	-	-	O	SI228
Tf0021		AAvailable marker	-	-	-	-	-	O		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein
Tf0290		AAvailable marker	O	-	-	-	O	O		Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2	AGI-08	57.802
Tf0293		AAvailable marker	O	O	O	-	-	O		Ciclev10019219m	scaffold_3	49031441	49035202	C_unshiu_00018:mRNA_78.1	C_unshiu_00018	562898	566588	Putative anthocyanin regulator
Cp1880		AAvailable marker	-	-	-	-	-	O		Ciclev10016235m	scaffold_2	9351630	9354621	C_unshiu_00067:mRNA_9.1	C_unshiu_00067	71252	74672	Peptide deformylase
Gn0073		AAvailable marker	O	O	-	-	O	O		Ciclev10014770m	scaffold_2	35895662	35898841	C_unshiu_00077:mRNA_4.1	C_unshiu_00077	30410	32987	Tonoplast dicarboxylate transporter	AGI-06	12.402
Tf0294		AAvailable marker	O	-	-	-	O	O		Ciclev10021365m	scaffold_3	4794701	4799518	C_unshiu_00135:mRNA_58.2	C_unshiu_00135	398519	403121	Ureidoglycine aminohydrolase isoform 1	AGI-05	27.135
Cp1885		AAvailable marker	-	-	-	-	-	O		Ciclev10014471m	scaffold_2	11418331	11422116	C_unshiu_01218:mRNA_4.1	C_unshiu_01218	14084	22447	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Mf0012		AAvailable marker	-	-	-	-	-	O	SI131	Ciclev10019300m	scaffold_3	26517176	26525778	No
Al0517		AAvailable marker	-	-	-	-	O	O		Ciclev10028293m	scaffold_8	2572439	2574295	C_unshiu_00363:mRNA_1.1	C_unshiu_00363	5892	7583	Limonoid glucosyltransferase	AGI-08	74.016			JtR-08	15.435
Tf0300		AAvailable marker	O	O	-	-	O	O		Ciclev10022370m	scaffold_3	43862440	43863744	C_unshiu_01051:mRNA_10.1	C_unshiu_01051	83417	84406	Auxin-induced protein IAA4	AGI-05	54.726
Gn0082		AAvailable marker	-	-	-	-	-	O
Tf0032		AAvailable marker	O	-	-	-	O	O		Ciclev10026014m	scaffold_7	94155	97631	C_unshiu_00706:mRNA_8.1	C_unshiu_00706	51525	54837	AT-hook motif nuclear-localized protein 10	AGI-02	78.531
Wy0056	Wy0056.em	AAvailable marker	-	-	-	-	O	O		Ciclev10014198m	scaffold_2	31740431	31747095	C_unshiu_00027:mRNA_81.1	C_unshiu_00027	521555	527308	Auxin response factor	AGI-06	36.788
Al0524		AAvailable marker	O	O	-	-	O	O	SI043,SI341	Ciclev10031723m	scaffold_4	115362	118025	C_unshiu_02038:mRNA_4.1	C_unshiu_02038	34256	38775	Hypothetical protein	AGI-07	5.972			JtR-07	76.060			RP-07	74.381
Cp1925		AAvailable marker	-	-	-	-	O	O		Ciclev10005182m	scaffold_9	3115971	3120271	C_unshiu_00051:mRNA_29.1	C_unshiu_00051	224928	229203	YjeF family domain-containing protein	AGI-03	24.457
Tf0036		AAvailable marker	O	-	-	-	O	O		Ciclev10022032m	scaffold_3	43850269	43852816	C_unshiu_01051:mRNA_11.1	C_unshiu_01051	94369	96339	Auxin-responsive protein IAA14	AGI-05	53.260
Al0602		AAvailable marker	-	-	-	-	-	O		Ciclev10017248m	scaffold_2	27141148	27141869	C_unshiu_00017:mRNA_42.1	C_unshiu_00017	304994	305523	Hypothetical protein			KmG-06	18.450	JtR-06S	3.805
Mf0033		AAvailable marker	-	-	-	-	O	O		Ciclev10010044m	scaffold_1	6227617	6228389	C_unshiu_00075:mRNA_11.1	C_unshiu_00075	123779	124531	Hypothetical protein	AGI-01	62.570	KmG-01	46.353	JtR-01S	106.811	NAT-01S	77.905
Tf0311		AAvailable marker	O	-	-	-	O	O		Ciclev10011596m	scaffold_6	15932016	15936176	C_unshiu_00779:mRNA_8.1	C_unshiu_00779	78105	81377	Auxin transporter-like protein 2	AGI-08	91.890
Tf0042.2		AAvailable marker	O	-	-	-	-	O		Ciclev10016820m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein
Tf0315		AAvailable marker	O	-	-	-	O	O		Ciclev10012089m	scaffold_6	14087181	14090115	C_unshiu_00287:mRNA_20.1	C_unshiu_00287	221944	222997	Phantastica	AGI-08	93.657
Mf0039		AAvailable marker	O	-	-	-	O	O	SI016,SI147					C_unshiu_00343:mRNA_25.1	C_unshiu_00343	221381	224081	PLAC8 family protein	AGI-05	5.510	KmG-05S	5.643	JtR-05	10.014
Cp1998		AAvailable marker	-	-	-	-	-	O		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein
Mf0041		AAvailable marker	-	-	-	-	O	O		Ciclev10022012m	scaffold_3	45076821	45080633	C_unshiu_00069:mRNA_16.1	C_unshiu_00069	123654	127483	Histidine-containing phosphotransfer protein 1	AGI-05	56.534	KmG-05S	73.977	JtR-05	38.393
Tf0318		AAvailable marker	O	O	O	-	O	O		Ciclev10031873m	scaffold_4	13751433	13754767	C_unshiu_00240:mRNA_28.2	C_unshiu_00240	282002	285335	Transcription factor bHLH137	AGI-07	37.467
Cp2026		AAvailable marker	-	-	-	-	O	O		Ciclev10011534m	scaffold_6	23506491	23509585	C_unshiu_00098:mRNA_44.1	C_unshiu_00098	286004	289150	Tryptophan synthase, beta subunit	AGI-04	43.239
Al0617		AAvailable marker	O	-	-	-	O	O		Ciclev10033546m	scaffold_4	1021179	1023023	C_unshiu_00012:mRNA_24.1	C_unshiu_00012	188654	191971	Ubiquitin-binding WIYLD domain protein	AGI-07	8.553			JtR-07	74.121
Al0618		AAvailable marker	-	-	-	-	O	O		Ciclev10000916m	scaffold_5	40872793	40877775	C_unshiu_00123:mRNA_34.1	C_unshiu_00123	204269	222067	Phosphatase 2c, putative isoform 6	AGI-09	38.004	KmG-09	73.330
Tf0056		AAvailable marker	O	-	-	-	O	O	SI061,SI137	Ciclev10012265m	scaffold_6	22305922	22308021	C_unshiu_00252:mRNA_6.1	C_unshiu_00252	48632	49537	Myb domain protein 42	AGI-04	49.225
Tf0326		AAvailable marker	O	O	-	O	O	O	SI085	Ciclev10024695m	scaffold_7	2501520	2509737	C_unshiu_02417:mRNA_1.1	C_unshiu_02417	3692	11684	Histone-lysine N-methyltransferase SUVR5	AGI-02	69.928
Cp0321		AAvailable marker	-	-	-	-	-	O		Ciclev10026722m	scaffold_7	8898626	8899984	C_unshiu_00221:mRNA_33.1	C_unshiu_00221	211111	214358	Hypothetical protein
If0008		AAvailable marker	-	-	-	-	-	O		Ciclev10009315m	scaffold_1	26576059	26578193	No							KmG-01	15.635	JtR-01S	57.666
If0010		AAvailable marker	O	-	-	-	O	-		Ciclev10026308m	scaffold_7	1264965	1266960	C_unshiu_00218:mRNA_11.1	C_unshiu_00218	63403	65018	60S ribosomal protein L8	AGI-02	73.759	KmG-02	76.687	JtR-02	10.849	NAT-02S	71.041
Al0625		AAvailable marker	O	-	-	-	O	O	SI329					C_unshiu_00139:mRNA_45.1	C_unshiu_00139	346138	349862	Regulator of chromosome condensation family protein	AGI-04	66.455							RP-04	23.717
Cp0384		AAvailable marker	O	-	-	-	O	O		Ciclev10015162m	scaffold_2	35422598	35425980	C_unshiu_00048:mRNA_23.2	C_unshiu_00048	111764	114820	APS reductase	AGI-06	19.002
Tf0337		AAvailable marker	O	-	-	-	O	O		Ciclev10031846m	scaffold_4	19635415	19637061	C_unshiu_00099:mRNA_23.1	C_unshiu_00099	186480	188051	Ap2 erf and b3 domain-containing transcription factor rav2	AGI-07	54.869
Al0630		AAvailable marker	O	-	-	-	-	O		Ciclev10008681m	scaffold_1	487184	489198	C_unshiu_00129:mRNA_38.1	C_unshiu_00129	342865	344872	Kelch repeat-containing F-box family protein									RP-01	1.092
Cp0419		AAvailable marker	-	O	-	-	O	O		Ciclev10002215m	scaffold_5	28815314	28816638	C_unshiu_00758:mRNA_1.1	C_unshiu_00758	794	4329	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-09	88.739							SA-09	44.226
Cp0431		AAvailable marker	O	-	-	-	O	O		Ciclev10015731m	scaffold_2	27084177	27089027	C_unshiu_00017:mRNA_35.1	C_unshiu_00017	248152	252850	E3 ubiquitin protein ligase RIE1	AGI-06	60.660
If0208		AAvailable marker	-	O	-	O	O	O	SI083,SI317	Ciclev10001680m	scaffold_5	40628244	40630241	C_unshiu_00234:mRNA_9.1	C_unshiu_00234	94988	99176	TRNA-processing ribonuclease BN	AGI-09	39.296	KmG-09	72.036	JtR-09S	115.150	NAT-09	89.867
Cp2188		AAvailable marker	-	-	-	-	O	O		Ciclev10028997m	scaffold_8	24666729	24669708	C_unshiu_00021:mRNA_116.1	C_unshiu_00021	778469	782836	Phytol kinase	AGI-08	2.186
Al0635		AAvailable marker	-	-	-	-	O	O		Ciclev10015354m	scaffold_2	26435540	26438838	C_unshiu_00197:mRNA_27.1	C_unshiu_00197	251131	253300	GAGA-binding transcriptional activator	AGI-06	69.195	KmG-06	15.268	JtR-06S	1.903	NAT-06S	7.869
If0211		AAvailable marker	-	-	-	-	O	O	SI226					No					AGI-09	47.410	KmG-09	60.856
Cp0452		AAvailable marker	-	-	-	-	O	O		Ciclev10030661m	scaffold_4	23575399	23582495	C_unshiu_00001:mRNA_85.1	C_unshiu_00001	566935	573821	Alpha-amylase-like 3 isoform 1	AGI-07	75.350
Tf0344		AAvailable marker	O	-	-	-	O	O		Ciclev10016433m	scaffold_2	34624236	34631123	C_unshiu_00002:mRNA_17.1	C_unshiu_00002	124392	131264	Floral homeotic protein AGAMOUS	AGI-06	24.216
Al0636		AAvailable marker	O	-	-	O	O	O	SI313	Ciclev10007493m	scaffold_1	23776796	23782088	C_unshiu_00080:mRNA_56.1	C_unshiu_00080	464290	469444	WW domain-containing protein	AGI-01	27.489	KmG-01	25.751	JtR-01S	63.210	NAT-01S	12.652	RP-01	48.896
Al0637		AAvailable marker	O	-	-	-	-	O	SI353	Ciclev10019147m	scaffold_3	2939620	2941934	C_unshiu_00092:mRNA_51.1	C_unshiu_00092	363486	365791	Spotted leaf protein, putative
Cp2208		AAvailable marker	-	-	-	-	-	O		Ciclev10021564m	scaffold_3	7420176	7425027	C_unshiu_00995:mRNA_4.1	C_unshiu_00995	39031	43144	D-ribulose-5-phosphate-3-epimerase isoform 1
Cp2210		AAvailable marker	-	-	-	-	-	O		Ciclev10007886m	scaffold_1	8125279	8130885	C_unshiu_00744:mRNA_3.1	C_unshiu_00744	19836	25320	6-phosphofructokinase isoform 1
Al0639		AAvailable marker	O	-	-	-	O	O		Ciclev10001091m	scaffold_5	41703787	41708779	C_unshiu_00009:mRNA_141.1	C_unshiu_00009	874868	888901	IQ calmodulin-binding motif protein	AGI-01	70.494	KmG-01	48.992	JtR-01S	110.675	NAT-01S	94.639	RP-01	28.746
Mf0072		AAvailable marker	-	-	-	-	O	O		Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein	AGI-04	91.104	KmG-04	58.483					RP-04	8.126
Cp2229		AAvailable marker	-	-	-	-	O	O		Ciclev10022058m	scaffold_3	4117485	4120274	C_unshiu_00318:mRNA_6.1	C_unshiu_00318	44376	47085	Nucleoside diphosphate kinase	AGI-05	27.135
Cp2232		AAvailable marker	-	-	-	-	O	O		Ciclev10002687m	scaffold_5	17809523	17810742	C_unshiu_01815:mRNA_5.1	C_unshiu_01815	28593	29777	Photosystem I reaction center subunit N	AGI-02	22.436
Cp2237		AAvailable marker	-	-	-	-	O	O		Ciclev10028314m	scaffold_8	13190041	13194829	C_unshiu_01736:mRNA_2.1	C_unshiu_01736	18986	23543	Riboflavin biosynthesis protein ribBA, chloroplastic	AGI-08	55.965
If0220		AAvailable marker	-	-	-	-	-	O		Ciclev10001084m	scaffold_5	39480647	39484776	C_unshiu_00457:mRNA_15.1	C_unshiu_00457	99488	99913	Hypothetical protein
Mf0076		AAvailable marker	-	-	-	-	O	O		Ciclev10012554m	scaffold_6	11704199	11706676	C_unshiu_00207:mRNA_15.1	C_unshiu_00207	132539	134984	Cytosolic ascorbate peroxidase	AGI-08	93.624
Cp0506		AAvailable marker	O	-	-	-	O	O		Ciclev10001978m	scaffold_5	40832603	40834625	No					AGI-09	38.656
Cp2262		AAvailable marker	-	-	-	-	-	O		Ciclev10026121m	scaffold_7	1870933	1874304	C_unshiu_00289:mRNA_20.1	C_unshiu_00289	113542	116894	Galactose mutarotase-like superfamily protein
Cp2263		AAvailable marker	-	-	-	-	O	O		Ciclev10026034m	scaffold_7	2586384	2588513	C_unshiu_00025:mRNA_69.1	C_unshiu_00025	530588	532071	Hypothetical protein	AGI-02	70.082
If0223		AAvailable marker	-	-	-	-	O	O						No					AGI-02	76.168	KmG-07	43.554	JtR-02	13.208	NAT-02S	71.420
Mf0079		AAvailable marker	O	-	-	-	O	O	SI067	Ciclev10028839m	scaffold_8	24721937	24724569	C_unshiu_00984:mRNA_8.1	C_unshiu_00984	55676	58212	Cinnamoyl CoA reductase	AGI-08	3.409	KmG-08				NAT-082
Ks9003		AAvailable marker	-	-	-	-	-	O		Ciclev10014733m	scaffold_2	8436110	8440408	C_unshiu_00494:mRNA_1.1	C_unshiu_00494	7014	11146	Ascorbate oxidase			KmG-09	19.560	JtR-09S	5.836
Ks9005		AAvailable marker	O	-	-	-	O	O	SI342	Ciclev10015338m	scaffold_2	290799	294122	C_unshiu_00109:mRNA_36.1	C_unshiu_00109	219070	222359	TRNA-splicing ligase RtcB	AGI-02	13.646	KmG-02	23.647					RP-02	16.986
Cp0537		AAvailable marker	O	-	-	-	O	O		Ciclev10016779m	scaffold_2	34189216	34193815	C_unshiu_00002:mRNA_71.2	C_unshiu_00002	543564	547918	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	AGI-06	25.930
Tf0090		AAvailable marker	O	-	-	-	-	O		Ciclev10031135m	scaffold_4	16519046	16521918	C_unshiu_00086:mRNA_45.1	C_unshiu_00086	374812	377677	Transcription factor bHLH62
Mf0086		AAvailable marker	O	-	-	-	O	O	SI220,SI315	Ciclev10009756m	scaffold_1	25592494	25593617	C_unshiu_00066:mRNA_75.1	C_unshiu_00066	500992	501833	17.9 kDa class II heat shock protein	AGI-01	26.428	KmG-01	19.692	JtR-01S	57.666			RP-01	69.936
Tf0093.2		AAvailable marker	O	-	-	-	O	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4	AGI-09	86.512
Tf0364		AAvailable marker	O	-	-	-	O	O		Ciclev10011266m	scaffold_6	24606501	24612654	C_unshiu_00135:mRNA_49.1	C_unshiu_00135	338118	344273	FACT complex subunit SSRP1	AGI-04	37.102
Ks9010		AAvailable marker	-	-	-	-	O	O		Ciclev10007188m	scaffold_9	29460866	29463385	C_unshiu_00056:mRNA_15.1	C_unshiu_00056	116304	118823	Receptor-like protein kinase HERK 1	AGI-04	62.499	KmG-04	39.019
Ks9011		AAvailable marker	-	-	-	-	-	O		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin					JtR-032
Mf0090		AAvailable marker	-	O	-	-	O	O		Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.869	KmG-02	11.182	JtR-02	3.182			RP-02	8.191
Bf0011		AAvailable marker	O	-	-	-	O	O	SI218	Ciclev10008900m	scaffold_1	4722889	4726339	C_unshiu_00547:mRNA_9.1	C_unshiu_00547	54556	57654	NADH-cytochrome b5 reductase	AGI-01	67.331							RP-01	23.653
Mf0092		AAvailable marker	-	-	-	-	O	O	SI138	Ciclev10012056m	scaffold_6	21137783	21142157	C_unshiu_00052:mRNA_27.2	C_unshiu_00052	168316	172622	Phosphopyruvate hydratase	AGI-04	59.190	KmG-04	30.795			NAT-04	11.576
Tf0368		AAvailable marker	O	-	-	-	O	O	SI102	Ciclev10020717m	scaffold_3	40963774	40965744	C_unshiu_00735:mRNA_9.1	C_unshiu_00735	76673	78652	NAC transcription factor 29	AGI-05	48.590
Mf0094		AAvailable marker	-	-	-	-	O	O		Ciclev10026594m	scaffold_7	3721375	3722616	C_unshiu_00169:mRNA_29.1	C_unshiu_00169	217948	219072	Maternal effect embryo arrest protein	AGI-02	67.666	KmG-02	52.124	JtR-02	25.334
Cp0632		AAvailable marker	O	-	-	-	O	O		Ciclev10007941m	scaffold_1	27698934	27703620	C_unshiu_00237:mRNA_7.1	C_unshiu_00237	40930	45531	Protein translocase subunit SecY	AGI-08	56.724
Mf0097		AAvailable marker	O	O	-	O	O	O	SI235,SI365					No					AGI-07	44.663	KmG-07	50.959	JtR-07	44.863	NAT-07	3.290	RP-07	46.168
Edw001		AAvailable marker	-	-	-	-	-	O		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof
Cp0635		AAvailable marker	O	-	O	-	O	O						C_unshiu_00337:mRNA_4.1	C_unshiu_00337	11596	15307	50S ribosomal protein L4	AGI-06	17.029
Tf0376		AAvailable marker	O	-	-	-	O	O	SI072	Ciclev10022680m	scaffold_3	8528292	8529236	C_unshiu_00154:mRNA_1.1	C_unshiu_00154	9832	10761	CRT binding factor 3	AGI-05	41.853
Cp0671		AAvailable marker	-	-	-	-	O	O		Ciclev10009489m	scaffold_1	28353948	28356507	C_unshiu_00590:mRNA_26.1	C_unshiu_00590	165626	168046	UPF0133 protein	AGI-01	36.113
Ov0002		AAvailable marker	O	-	-	-	O	O	SI110,SI179	Ciclev10032770m	scaffold_4	2422861	2424838	C_unshiu_00979:mRNA_13.2	C_unshiu_00979	50508	52478	60S ribosomal protein L10	AGI-07	13.657			JtR-07	68.221			RP-07	82.035
Cp0675		AAvailable marker	O	-	-	-	O	O		Ciclev10030633m	scaffold_4	20294240	20301426	C_unshiu_00015:mRNA_33.1	C_unshiu_00015	302440	309360	DNA-directed RNA polymerase	AGI-07	59.793
Ov0005		AAvailable marker	-	-	-	-	O	O	SI243,SI331	Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_02126:mRNA_2.1	C_unshiu_02126	9391	13319	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	AGI-05	47.986
Tf0386		AAvailable marker	O	O	O	-	O	O	SI044,SI095	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein	AGI-04	41.367
Bf0036		AAvailable marker	O	O	-	O	O	O		Ciclev10008751m	scaffold_1	22840947	22844111	C_unshiu_00103:mRNA_45.1	C_unshiu_00103	244231	250643	GrpE protein homolog	AGI-01	29.144							RP-01	46.445
Tf0119		AAvailable marker	-	-	-	-	O	O		Ciclev10014416m	scaffold_2	35564238	35570619	C_unshiu_01497:mRNA_5.1	C_unshiu_01497	20297	33375	Hypothetical protein	AGI-06	19.002
Tf0393		AAvailable marker	O	-	-	-	-	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4									RP-09	29.347
Cp0741		AAvailable marker	O	-	-	-	O	O		Ciclev10008230m	scaffold_1	3746864	3749903	C_unshiu_00055:mRNA_22.1	C_unshiu_00055	168281	172005	Ferrochelatase	AGI-01	75.964
Fb0144		AAvailable marker	-	-	-	-	O	O	SI191	Ciclev10019665m	scaffold_3	50861813	50866146	C_unshiu_00206:mRNA_42.1	C_unshiu_00206	283219	294491	Hypothetical protein	AGI-05	107.806
Cp0781		AAvailable marker	-	-	-	-	O	O		Ciclev10021469m	scaffold_3	41043663	41046480	C_unshiu_00305:mRNA_28.1	C_unshiu_00305	251599	254198	Thioredoxin-like 7 family protein	AGI-05	50.294
Fb0159		AAvailable marker	O	-	-	-	O	O	SI227	Ciclev10028241m	scaffold_8	23456630	23459052	C_unshiu_00375:mRNA_4.1	C_unshiu_00375	27952	30443	O-Glycosyl hydrolases family 17 protein	AGI-08	13.499	KmG-08	9.978					RP-08	2.327
Ov0020		AAvailable marker	O	-	-	-	O	O	SI055,SI143,SI213	Ciclev10011842m	scaffold_6	21598429	21600967	C_unshiu_00037:mRNA_7.2	C_unshiu_00037	37719	40241	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase	AGI-04	55.145	KmG-04	22.465			NAT-04	3.806	RP-04	40.905
Tf0410		AAvailable marker	O	-	-	-	O	O		Ciclev10032838m	scaffold_4	213798	215848	C_unshiu_00168:mRNA_34.1	C_unshiu_00168	273522	275858	Pollen-specific protein SF3	AGI-07	6.146
Ov0104		AAvailable marker	O	-	-	-	O	O	SI216	Ciclev10004850m	scaffold_9	13440332	13442904	C_unshiu_02379:mRNA_2.1	C_unshiu_02379	22906	25482	Obtusifoliol 14-alpha demethylase	AGI-08	56.724			JtR-08	28.207
Bf0136		AAvailable marker	O	-	-	-	-	O
Cp0895		AAvailable marker	-	-	-	-	O	O		Ciclev10011406m	scaffold_6	19241700	19246874	C_unshiu_00089:mRNA_3.1	C_unshiu_00089	9945	14749	ATP-dependent RNA helicase	AGI-04	67.375
Tf0419		AAvailable marker	O	O	O	-	-	O		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY
Tf0420		AAvailable marker	O	O	O	-	O	O		Ciclev10022018m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Ov0111		AAvailable marker	-	-	-	-	O	O		Ciclev10000069m	scaffold_5	8532280	8539677	C_unshiu_00033:mRNA_6.1	C_unshiu_00033	57678	65071	TSA: Wollemia nobilis transcribed RNA sequence	AGI-09	85.810	KmG-09	11.923	JtR-09S	6.157			RP-09	20.238
Tf0148		AAvailable marker	O	-	-	-	O	O	SI119	Ciclev10032816m	scaffold_4	20998708	21001535	C_unshiu_00010:mRNA_116.1	C_unshiu_00010	869802	872410	Putative WRKY transcription factor 75	AGI-07	64.812
Tf0150		AAvailable marker	O	O	-	O	O	O	SI262	Ciclev10028292m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Ov0117		AAvailable marker	O	-	-	-	O	O	SI040	Ciclev10010926m	scaffold_6	19105139	19113780	C_unshiu_00089:mRNA_17.1	C_unshiu_00089	153791	161685	Hypothetical protein	AGI-04	66.455							RP-04	28.160
Tf0151		AAvailable marker	O	-	-	-	O	O	SI159,SI281	Ciclev10002917m	scaffold_5	35357333	35359897	No					AGI-09	60.528							RP-09	41.892
Ov0118		AAvailable marker	O	-	-	-	O	O	SI357	Ciclev10001621m	scaffold_5	34294853	34297359	C_unshiu_03047:mRNA_1.1	C_unshiu_03047	1418	3450	Dihydrodipicolinate synthase	AGI-04	34.838	KmG-09	36.138	JtR-09S	72.673	NAT-09	55.867
Tf0152		AAvailable marker	O	-	-	-	O	O		Ciclev10021000m	scaffold_3	2002427	2008126	C_unshiu_01105:mRNA_2.1	C_unshiu_01105	3681	8106	AT-hook motif nuclear localized protein 1	AGI-05	8.506
Tf0153		AAvailable marker	O	-	-	-	O	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta	AGI-05	41.267
Tf0431		AAvailable marker	O	-	-	-	-	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A
Fb0301		AAvailable marker	-	-	-	-	O	O	SI053	Ciclev10014804m	scaffold_2	14143537	14146003	C_unshiu_00466:mRNA_1.1	C_unshiu_00466	13811	16178	4-coumarate:coenzyme A ligase 4	AGI-06	92.727	KmG-06						RP-06.1	16.627
Tf0154		AAvailable marker	O	-	-	-	-	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta
Tf0432		AAvailable marker	O	-	-	-	O	O		Ciclev10016685m	scaffold_2	31420457	31425299	C_unshiu_00091:mRNA_39.1	C_unshiu_00091	370141	375026	Nuclear transcription factor Y subunit A-7	AGI-06	38.958
Al0206		AAvailable marker	-	-	-	-	O	O		Ciclev10032727m	scaffold_4	12309480	12311438	C_unshiu_00365:mRNA_26.1	C_unshiu_00365	192643	194502	NADPH-dependent codeinone reductase-like protein	AGI-07	38.565			JtR-07	52.611			RP-07	29.935
Ov0125		AAvailable marker	-	-	-	-	O	O		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase	AGI-08	41.398
Cp1031		AAvailable marker	-	O	-	-	O	O		Ciclev10005224m	scaffold_9	2324313	2328666	C_unshiu_00394:mRNA_4.1	C_unshiu_00394	11970	16480	Putative E3 ubiquitin-protein ligase MARCH10	AGI-03	18.610
Tf0163		AAvailable marker	O	-	-	-	O	O		Ciclev10010423m	scaffold_1	26740822	26744016	C_unshiu_00105:mRNA_35.1	C_unshiu_00105	316978	320206	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1	AGI-01	31.240
Fb0343		AAvailable marker	O	-	-	-	-	O		Ciclev10033061m	scaffold_4	25059045	25061910	C_unshiu_00001:mRNA_322.1	C_unshiu_00001	2042062	2044301	U6 snRNA-associated Sm-like protein LSm7			KmG-07
Tf0165		AAvailable marker	O	-	-	-	O	O		Ciclev10031793m	scaffold_4	19605473	19608059	C_unshiu_00099:mRNA_19.1	C_unshiu_00099	154500	156794	Two-component response regulator ARR18	AGI-07	55.503
Lp0133		AtAvailable marker	O	-	-	-	O	O		Ciclev10021187m	scaffold_3	39657613	39660222	C_unshiu_00037:mRNA_84.1	C_unshiu_00037	603033	605555	Class I chitinase	AGI-05	48.590	KmG-05S	60.040			NAT-05	26.483	RP-05	65.128
Ov0503		AtAvailable marker	O	-	-	-	-	O		Ciclev10020582m	scaffold_3	28382218	28386683	C_unshiu_00585:mRNA_5.1	C_unshiu_00585	31636	34824	60S ribosomal protein L5							NAT-05	19.042
Gn0031		AtAvailable marker	-	-	-	-	O	O											AGI-08	37.706
Tf0256		AtAvailable marker	O	-	-	-	O	O		Ciclev10021699m	scaffold_3	43420187	43422432	C_unshiu_00411:mRNA_13.1	C_unshiu_00411	116444	118424	Myb-related protein Myb4	AGI-05	52.314
Tf0343		AtAvailable marker	O	-	-	-	O	O		Ciclev10016587m	scaffold_2	29204680	29206501	C_unshiu_00022:mRNA_67.1	C_unshiu_00022	489282	490950	High mobility group B protein 7	AGI-06	44.393
Lp0021		AtAvailable marker	O	-	-	-	-	O		Ciclev10021502m	scaffold_3	1771668	1774647	C_unshiu_00534:mRNA_8.2	C_unshiu_00534	53508	55845	Aquaporin
Cp1034		AtAvailable marker	-	-	-	-	O	O		Ciclev10005575m	scaffold_9	21107894	21109983	C_unshiu_00160:mRNA_22.1	C_unshiu_00160	182942	184946	Putative calcium-binding protein CML48	AGI-03	46.760
Ov0301		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI078	Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	23.526	JtR-05	19.932			RP-05	21.590
Al0217		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI350	Ciclev10022061m	scaffold_3	1203357	1206483	No							KmG-05S		JtR-05	25.182
Lp0032		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI286					C_unshiu_00679:mRNA_13.1	C_unshiu_00679	124222	132199	CwfJ-like family protein, putative isoform 1
Lp0040		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor			KmG-02	52.181	JtR-02	25.334
Al0239		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative
Vs0012		Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Vs0014		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_00375:mRNA_10.1	C_unshiu_00375	50515	51680	Metallothionein
Vs0016		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_02110:mRNA_3.2	C_unshiu_02110	27660	28723	Metallothionein	AGI-05	25.980	KmG-08	17.483	JtR-08
Lp0105		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI113,SI163,SI254	Ciclev10026412m	scaffold_7	815904	817239	C_unshiu_00353:mRNA_13.1	C_unshiu_00353	92033	93437	Hypothetical protein	AGI-02	75.939
Lp0116		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028879m	scaffold_8	19397294	19398741	C_unshiu_02034:mRNA_3.1	C_unshiu_02034	7573	8901	DUF3049 family protein					JtR-08	18.207	NAT-05	47.659
Al0306		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI029	Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin					JtR-05	23.944
Tf0219		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI076,SI267	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	49.250
Ov0425		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI051,SI291,SI351,SI371	Ciclev10015385m	scaffold_2	4021167	4024377	C_unshiu_00992:mRNA_13.1	C_unshiu_00992	79008	82132	DnaJ	AGI-07	41.317							RP-07	25.534
Al0319		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10022720m	scaffold_3	43447942	43449920	C_unshiu_00411:mRNA_15.1	C_unshiu_00411	140821	145311	Actin-depolymerizing factor 2	AGI-03	46.274	KmG-05S	65.273	JtR-05	42.339			RP-05	72.912
Gn0014.2		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181	C_unshiu_00056:mRNA_20.1	C_unshiu_00056	144107	146527	Beta-carotene hydroxylase 1
Lp0143		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10019139m	scaffold_3	6076949	6080875	C_unshiu_00159:mRNA_40.1	C_unshiu_00159	339926	343475	Translation elongation factor G	AGI-05	45.297			JtR-05	18.056
Tf0241		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10027798m	scaffold_8	22106872	22114471	C_unshiu_00481:mRNA_18.1	C_unshiu_00481	121975	128680	Zinc finger CCCH domain-containing protein 24	AGI-08	27.618
Cp1556		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10018756m	scaffold_3	21432494	21440948	C_unshiu_00175:mRNA_9.1	C_unshiu_00175	91338	99600	Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic	AGI-05	40.337
Tf0254		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10010885m	scaffold_6	23916876	23939827	C_unshiu_00253:mRNA_3.1	C_unshiu_00253	14647	20586	Hypothetical protein	AGI-04	38.226
Al0409		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI201,SI252	Ciclev10024949m	scaffold_7	5042508	5046271	No					AGI-02	50.758	KmG-02	44.930	JtR-02	29.462	NAT-02S	90.742
Tf0271		Bno homozygous cultivar with minor allele	O	O	-	O	-	-		Ciclev10010976m	scaffold_6	11707953	11715646	C_unshiu_01619:mRNA_7.1	C_unshiu_01619	42347	50640	CCR4-NOT transcription complex subunit 4	AGI-08	95.613
Al0501		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10012221m	scaffold_6	14625884	14628443	C_unshiu_00032:mRNA_48.1	C_unshiu_00032	462609	490932	Tropinone reductase I
Cp0089		Bno homozygous cultivar with minor allele	O	-	O	-	-	-		Ciclev10032543m	scaffold_4	23858830	23861090	C_unshiu_00001:mRNA_128.1	C_unshiu_00001	852968	856494	CAAX amino terminal protease family protein	AGI-07	77.194
Cp0093		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10032427m	scaffold_4	23596434	23599906	C_unshiu_00001:mRNA_89.1	C_unshiu_00001	587949	598235	Putative WRKY transcription factor 72	AGI-07	74.537
Gn0065		Bno homozygous cultivar with minor allele	O	-	-	-	-	-						C_unshiu_00021:mRNA_4.1	C_unshiu_00021	34178	38574	Phytoene desaturase	AGI-09	79.316
Cp1791		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10027428m	scaffold_7	11604464	11607028	C_unshiu_00582:mRNA_4.1	C_unshiu_00582	10067	11470	NBS-LRR type disease resistance protein	AGI-02	12.969
Gn0071		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI363	Ciclev10031039m	scaffold_4	25506446	25511133	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-07	86.113
Mf0010		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI048,SI149	Ciclev10032902m	scaffold_4	19467669	19468803	C_unshiu_00099:mRNA_4.1	C_unshiu_00099	12446	13357	30S ribosomal protein 3, chloroplastic	AGI-07	55.503	KmG-07	42.271	JtR-07	35.215	NAT-07
Al0515		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI178	Ciclev10030023m	scaffold_8	2673135	2674232	C_unshiu_00152:mRNA_38.1	C_unshiu_00152	273851	275034	DNA-damage-repair/toleration protein DRT100	AGI-08	73.663			JtR-08	14.154	NAT-081	10.596
Mf0017		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin	AGI-05	44.674
Tf0307		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10009286m	scaffold_1	25395688	25397278	C_unshiu_00442:mRNA_24.1	C_unshiu_00442	209015	209831	Myb domain protein 5	AGI-01	23.266
Mf0029	Mf0028.2	Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Al0612		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10001524m	scaffold_5	29481817	29485113	C_unshiu_01370:mRNA_2.1	C_unshiu_01370	27014	30283	UDP-glucuronic acid decarboxylase 1			KmG-09	28.332	JtR-09S	32.873
If0003		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI130	Ciclev10015433m	scaffold_2	35470078	35472862	C_unshiu_00048:mRNA_13.1	C_unshiu_00048	64652	67377	Aminomethyltransferase	AGI-06	18.136			JtR-06S	67.371
Al0621		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10025875m	scaffold_7	4575503	4577125	C_unshiu_00656:mRNA_8.1	C_unshiu_00656	32940	34329	Hypothetical protein	AGI-02	60.566	KmG-02	47.196	JtR-02	28.472
If0011		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10013189m	scaffold_6	20522569	20523527	C_unshiu_00331:mRNA_8.1	C_unshiu_00331	122906	127189	PLASMODESMATA CALLOSE-BINDING PROTEIN 3
Tf0062		Bno homozygous cultivar with minor allele	O	-	-	O	-	-	SI223	Ciclev10012377m	scaffold_6	11826472	11830875	C_unshiu_00207:mRNA_24.2	C_unshiu_00207	252955	255240	Transcription factor ASG4	AGI-08	93.624
If0205		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI256					C_unshiu_00046:mRNA_66.1	C_unshiu_00046	551244	556744	Hypothetical protein	AGI-04	86.280	KmG-04	52.960
If0209		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						No
Cp2190		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028681m	scaffold_8	24416582	24418982	C_unshiu_00021:mRNA_82.1	C_unshiu_00021	526890	529253	Kinase PfkB	AGI-08	13.780
Mf0083		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10015092m	scaffold_2	33837403	33842156	No					AGI-06	39.963
Ov0006		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	25.587	JtR-08	27.669
Tf0396		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI035	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60
Tf0406		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10008206m	scaffold_1	23463843	23470911	C_unshiu_00338:mRNA_22.1	C_unshiu_00338	163174	169978	NAD-dependent protein deacetylase SRT1	AGI-01	28.515
Al0029		Bno homozygous cultivar with minor allele	O	-	-	-	-	-						C_unshiu_00305:mRNA_10.1	C_unshiu_00305	69938	73026	Basic helix-loop-helix transcription factor	AGI-01	37.357			JtR-01S	50.000
Cp0870		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI338	Ciclev10031974m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	5.180
Cp0996		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI340	Ciclev10004474m	scaffold_9	543444	546746	C_unshiu_00007:mRNA_105.1	C_unshiu_00007	630727	633783	Neutral/alkaline invertase	AGI-03	9.366
Cp1044		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10015927m	scaffold_2	4354278	4358516	C_unshiu_00062:mRNA_38.1	C_unshiu_00062	326045	332995	Iron-sulfur cluster formation ABC transporter ATP-binding subunit	AGI-07	39.420
Wy0005		DDominant marker	O	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028	No					AGI-05	83.570	KmG-05S	122.932
Gn0028		DDominant marker	-	-	-	-	-	-															JtR-01S	10.669
Tf0286		DDominant marker	O	-	-	-	-	-		Ciclev10011556m	scaffold_6	25001586	25004619	C_unshiu_01279:mRNA_6.1	C_unshiu_01279	43222	46082	Dof zinc finger protein DOF5.2	AGI-04	32.710
Al0519		DDominant marker	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	No													RP-06.1
Gn0084		DDominant marker	-	-	-	-	-	-		Ciclev10010857m	scaffold_1	28321342	28323314
Mf0047		DDominant marker	-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081	C_unshiu_00036:mRNA_24.2	C_unshiu_00036	126753	128428	Late embryogenesis abundant protein Lea5-D	AGI-03	14.323	KmG-031	7.139			NAT-03	50.708
Mf0055		DDominant marker	-	-	-	-	O	O		Ciclev10022212m	scaffold_3	45551345	45552620	C_unshiu_01674:mRNA_4.1	C_unshiu_01674	17777	28549	Hypothetical protein	AGI-05	57.948	KmG-05S	75.866	JtR-05	38.749	NAT-05	39.573
If0206		DDominant marker	-	-	-	-	-	-	SI208	Ciclev10012955m	scaffold_6	15192652	15194091	C_unshiu_00034:mRNA_78.1	C_unshiu_00034	662958	664402	Universal stress protein A-like protein
Bf0028		DDominant marker	O	-	-	O	-	-	SI001	Ciclev10014319m	scaffold_2	35354776	35363026	C_unshiu_00048:mRNA_32.1	C_unshiu_00048	179733	188796	Soluble starch synthase III-1	AGI-06	17.966
Lp0009		DDominant marker	-	-	-	-	-	-		Ciclev10005585m	scaffold_9	30171791	30177202	C_unshiu_00134:mRNA_8.1	C_unshiu_00134	71410	76705	Phosphatase 2C 76 isoform 1			KmG-05S	36.573	JtR-05	12.427
Lp0024		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI010,SI302	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q	AGI-02	74.555							RP-02.2	17.330
Gn0027		HDisagree on Clementine haploid genotype	-	-	-	-	-	-											AGI-05	43.412
Wy0008		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10009193m	scaffold_1	9297360	9299641	No					AGI-01	57.863	KmG-01	43.003	JtR-01S	99.300
Cp0047		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10021599m	scaffold_3	40918148	40922656	C_unshiu_00735:mRNA_16.1	C_unshiu_00735	120088	124350	Hypothetical protein	AGI-05	48.590
Wy0026		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10010857m	scaffold_1	28321342	28323314	C_unshiu_02224:mRNA_5.1	C_unshiu_02224	30176	31684	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase	AGI-01	35.518
Gn0066.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475	C_unshiu_00043:mRNA_12.1	C_unshiu_00043	90212	94791	Carotenoid isomerase	AGI-04
Gn0068.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic
Al0627		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025602m	scaffold_7	128539	131642	C_unshiu_00706:mRNA_3.1	C_unshiu_00706	16590	18098	Trigalactosyldiacylglycerol 1 isoform 1	AGI-02	78.531
If0207		HDisagree on Clementine haploid genotype	-	-	-	-	-	-						C_unshiu_01172:mRNA_2.1	C_unshiu_01172	28413	28712	Hypothetical protein	AGI-07	45.716
Al0632		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like	AGI-08	56.724			JtR-08	18.952
Mf0073		HDisagree on Clementine haploid genotype	-	-	-	-	-	-						C_unshiu_00069:mRNA_5.1	C_unshiu_00069	25589	28375	Hypothetical protein					JtR-05	38.749	NAT-05	44.567
Edp005		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10000211m	scaffold_5	21203994	21212595	C_unshiu_00020:mRNA_80.1	C_unshiu_00020	742433	758888	Retinoblastoma protein 2	AGI-09	105.195							RP-09	23.442
Tf0149		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI128,SI269	Ciclev10002290m	scaffold_5	29400846	29403554	C_unshiu_00110:mRNA_26.1	C_unshiu_00110	160409	163111	Auxin-responsive protein IAA16	AGI-09	85.976							RP-09	32.826
Ov0121		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase							NAT-081
Al0209		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295	C_unshiu_00548:mRNA_21.1	C_unshiu_00548	168151	169460	Hypothetical protein			KmG-01	37.230	JtR-01S	88.382
Ov0305		MDisagree by Marco analysis	O	-	-	-	-	-	SI028,SI292	Ciclev10012499m	scaffold_6	16909492	16912088	C_unshiu_00008:mRNA_65.1	C_unshiu_00008	366943	369504	40S ribosomal protein S4	AGI-08	88.433	KmG-04	45.755					RP-04	15.410
Cp1111		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10024860m	scaffold_7	8603450	8610239	C_unshiu_00290:mRNA_28.1	C_unshiu_00290	241335	248051	Cell division protein ftsH, putative isoform 1	AGI-02	5.054
Cp1143		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10000651m	scaffold_5	39858531	39862402	C_unshiu_00096:mRNA_9.1	C_unshiu_00096	70713	73505	Phosphoglycerate dehydrogenase	AGI-09	42.158
Vs0002		MDisagree by Marco analysis	-	-	-	-	-	-	SI103,SI115	Ciclev10000046m	scaffold_5	41184180	41190033	C_unshiu_00127:mRNA_46.1	C_unshiu_00127	341430	344325	Hypothetical protein	AGI-09	36.685	KmG-09	73.930	JtR-07	68.221
Cp1200		MDisagree by Marco analysis	O	-	-	-	-	-						C_unshiu_00810:mRNA_8.1	C_unshiu_00810	99220	102123	Myrcene synthase, chloroplastic	AGI-08	38.604
Tf0195		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10030351m	scaffold_8	67997	74191	C_unshiu_01137:mRNA_4.1	C_unshiu_01137	30837	36569	AT-rich interactive domain-containing protein 3	AGI-08	87.683
Bf0226		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10008869m	scaffold_1	23654785	23658857	C_unshiu_00175:mRNA_30.1	C_unshiu_00175	321759	325671	SEC14 cytosolic factor	AGI-08	63.341
Bf0233		MDisagree by Marco analysis	O	-	-	-	-	-	SI359	Ciclev10019826m	scaffold_3	6502231	6504139	C_unshiu_00521:mRNA_1.1	C_unshiu_00521	2449	4274	Cytochrome P450 76C2	AGI-05	42.581							RP-05	27.235
Lp0102		MDisagree by Marco analysis	O	-	-	-	-	-	SI080,SI319,SI360,SI378	Ciclev10020840m	scaffold_3	30648732	30651259	C_unshiu_00759:mRNA_1.1	C_unshiu_00759	917	3353	Senescence-related gene 1	AGI-05	42.737	KmG-05S	41.895	JtR-05	28.682	NAT-05	37.917	RP-05	51.879
Ov0401		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10004762m	scaffold_9	28736008	28740315	No							KmG-08	58.635					SA-06
Cp1267		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011346m	scaffold_6	7983788	7991526	C_unshiu_02325:mRNA_1.1	C_unshiu_02325	1642	9359	Riboflavin biosynthesis protein RibD	AGI-08	94.382
Bf0411		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028317m	scaffold_8	21869065	21874083	C_unshiu_00500:mRNA_13.1	C_unshiu_00500	128482	133656	Sulfotransferase
Cp1334		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_01048:mRNA_12.1	C_unshiu_01048	87386	90179	Phosphoribosylformylglycinamidine cyclo-ligase	AGI-03	46.968
Al0304		MDisagree by Marco analysis	-	-	-	-	-	-	SI259,SI293	Ciclev10013536m	scaffold_6	22616979	22619271	C_unshiu_00038:mRNA_27.1	C_unshiu_00038	174815	175255	Nutrient reservoir, putative	AGI-04	46.361	KmG-04	16.744			NAT-04		RP-04	54.617
Lp0118		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_00008:mRNA_8.1	C_unshiu_00008	46363	54318	Protein trichome birefringence-like 33	AGI-02	73.759	KmG-02	75.522	JtR-02	24.745
Ov0420		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10019489m	scaffold_3	24840386	24845254	C_unshiu_00286:mRNA_25.1	C_unshiu_00286	176709	181573	Methylenetetrahydrofolate reductase (NAD(P)H)	AGI-05	41.306			JtR-05	41.208
Lp0122		MDisagree by Marco analysis	O	-	-	-	-	-	SI170	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q							NAT-02S	69.942	RP-02.2	17.330
Gn0005		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515	C_unshiu_00337:mRNA_13.1	C_unshiu_00337	68883	71725	Fibrillin	AGI-06	16.857	KmG-06	63.840			NAT-06S	59.976
Al0321.2		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10020878m	scaffold_3	541575	543121
Al0324		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029315m	scaffold_8	20424287	20425903	C_unshiu_00320:mRNA_1.2	C_unshiu_00320	12758	14314	Hypothetical protein	AGI-08	41.127					NAT-082	31.019	RP-08	17.081
Tf0235		MDisagree by Marco analysis	O	-	-	O	-	-		Ciclev10030472m	scaffold_4	17057658	17074755	C_unshiu_00225:mRNA_13.1	C_unshiu_00225	75706	96678	TATA-binding protein-associated factor 172	AGI-07	43.879
Lp0140		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10016399m	scaffold_2	32629908	32634194	C_unshiu_00070:mRNA_52.1	C_unshiu_00070	393864	397918	Universal stress protein A-like protein			KmG-02	12.229	JtR-02	2.765			RP-02	8.172
Ov0510		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011175m	scaffold_6	10016564	10019369	C_unshiu_00279:mRNA_11.1	C_unshiu_00279	116848	119657	Phenylalanine ammonia-lyase 1			KmG-04	62.284	JtR-04	3.789
Cp1585		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021651m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein
Gn0030		MDisagree by Marco analysis	-	-	-	-	-	-											AGI-08	37.823	KmG-08	37.758			NAT-082	30.069
Gn0033		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605	C_unshiu_00363:mRNA_2.1	C_unshiu_00363	14663	16198	Limonoid UDP-glucosyltransferase-like protein	AGI-08	73.527	KmG-08	86.664			NAT-082	86.620
Gn0043		MDisagree by Marco analysis	-	-	-	O	-	-	SI323	Ciclev10027790m	scaffold_8	21953129	21960709	C_unshiu_02574:mRNA_1.1	C_unshiu_02574		2470	Class III homeodomain leucine zipper protein	AGI-08	30.721	KmG-08	27.458
Al0417		MDisagree by Marco analysis	O	-	-	-	-	-	SI244,SI255	Ciclev10015483m	scaffold_2	35212691	35214865	C_unshiu_00048:mRNA_50.1	C_unshiu_00048	328418	330513	Kelch repeat-containing F-box family protein	AGI-06	20.297	KmG-06	62.256			NAT-06S	56.647
Gn0061.2		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10031014m	scaffold_4	25500601	25505812	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-06	20.248
Cp0106		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10020606m	scaffold_3	11867765	11869679	C_unshiu_00741:mRNA_6.1	C_unshiu_00741	44989	55203	Wall associated kinase-like 6, putative	AGI-03	40.566
Tf0022		MDisagree by Marco analysis	O	-	-	-	-	-	SI116	Ciclev10005681m	scaffold_9	31237089	31243866	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	78.631
Cp1887		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10010991m	scaffold_6	25193617	25201413	C_unshiu_00009:mRNA_34.1	C_unshiu_00009	183041	190334	ATP-dependent chaperone ClpB
Gn0078		MDisagree by Marco analysis	-	-	-	-	-	-															JtR-033
Gn0086.9		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029066m	scaffold_8	6317205	6322458
Cp1996		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10002770m	scaffold_5	29463604	29466318	C_unshiu_01370:mRNA_6.1	C_unshiu_01370	46574	49106	Sec-independent protein translocase protein TatA	AGI-09	86.532							RP-09	33.820
If0002		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10016861m	scaffold_2	35546692	35549207	C_unshiu_01497:mRNA_3.1	C_unshiu_01497	10215	14601	YggS family pyridoxal phosphate enzyme	AGI-06	19.002	KmG-06	62.901
If0203		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10022993m	scaffold_3	42229224	42231230	C_unshiu_00322:mRNA_21.1	C_unshiu_00322	121122	123131	Small ubiquitin-related modifier	AGI-05	51.293	KmG-05S	67.257	JtR-05	43.446
Cp2158		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10007944m	scaffold_1	22847397	22852110	C_unshiu_00103:mRNA_47.1	C_unshiu_00103	254015	258614	Trigger factor type chaperone family protein	AGI-01	24.422
Mf0070		MDisagree by Marco analysis	O	-	-	-	-	-	SI017	Ciclev10017346m	scaffold_2	3067337	3069249	C_unshiu_00246:mRNA_8.1	C_unshiu_00246	68251	69988	Hypothetical protein	AGI-07	36.616			JtR-07	52.611			RP-07	19.079
Tf0079		MDisagree by Marco analysis	O	-	-	O	-	-	SI270,SI294	Ciclev10021287m	scaffold_3	7047024	7049430	C_unshiu_00425:mRNA_7.1	C_unshiu_00425	35608	38027	Heat stress transcription factor B-4	AGI-05	45.092
If0219		MDisagree by Marco analysis	-	-	-	-	-	-						C_unshiu_00318:mRNA_17.1	C_unshiu_00318	110550	117056	Esterase					JtR-05	13.922	NAT-05	28.283
Tf0353		MDisagree by Marco analysis	O	-	-	-	-	-	SI087	Ciclev10018691m	scaffold_3	34696661	34702240	C_unshiu_00669:mRNA_17.2	C_unshiu_00669	126539	133312	Cell division cycle 5-like protein	AGI-08	53.069
Al0647		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10016069m	scaffold_2	32640743	32643349	C_unshiu_00070:mRNA_53.1	C_unshiu_00070	403765	406305	Nitric oxide synthase-interacting protein homolog	AGI-06		KmG-06	46.877
Mf0080		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663	C_unshiu_00217:mRNA_35.1	C_unshiu_00217	286418	288656	Transmembrane BAX inhibitor motif-containing protein 4	AGI-05	55.049	KmG-05S	64.740	JtR-05	38.503			RP-04	37.046
Tf0088		MDisagree by Marco analysis	O	-	-	-	-	-	SI066	Ciclev10001291m	scaffold_5	41275201	41278829	C_unshiu_00127:mRNA_34.1	C_unshiu_00127	251592	254627	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1	AGI-09	35.763
Cp0603		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10028998m	scaffold_8	2349655	2354496	C_unshiu_00363:mRNA_34.1	C_unshiu_00363	217631	222409	Hop-interacting protein THI043	AGI-08	75.684
Bf0029		MDisagree by Marco analysis	-	-	-	O	-	-	SI193,SI283					C_unshiu_00564:mRNA_19.1	C_unshiu_00564	138967	142178	Limonene synthase	AGI-09	84.912	KmG-09	24.379	JtR-09S	5.526
Ov0105		MDisagree by Marco analysis	O	-	-	-	-	-	SI126,SI278	Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant							NAT-07	36.023	RP-07
Bf0138		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10019462m	scaffold_3	6072460	6076187	C_unshiu_00428:mRNA_16.2	C_unshiu_00428	119232	121021	Oxygen-evolving enhancer protein 2, chloroplastic							NAT-05	14.555	RP-05	24.995
Ov0109		MDisagree by Marco analysis	O	-	-	-	-	-	SI172,SI202	Ciclev10004309m	scaffold_9	30513333	30517676	C_unshiu_00003:mRNA_13.1	C_unshiu_00003	122283	126575	Elongation factor 2	AGI-03	71.060			JtR-032	13.729			RP-03	71.532
Cp0975		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10012312m	scaffold_6	7924189	7928192	C_unshiu_00631:mRNA_15.1	C_unshiu_00631	149702	153660	Isopentenyl pyrophosphate isomerase	AGI-07	29.152
Fb0321		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10027873m	scaffold_8	6834487	6837762	C_unshiu_00918:mRNA_1.1	C_unshiu_00918	5010	7626	Arginine decarboxylase 1	AGI-08	56.405			JtR-08	25.280
Lp0019		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709	C_unshiu_00622:mRNA_2.1	C_unshiu_00622	28630	30583	50S ribosomal protein L29, chloroplastic			KmG-02	4.377	JtR-02	-6.938
Al0210		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382	C_unshiu_00166:mRNA_28.1	C_unshiu_00166	205256	208771	Eukaryotic initiation factor 4A-10			KmG-02	34.998	JtR-02	15.126
Ov0126		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10022482m	scaffold_3	46814909	46817474
Al0215		OOthers	-	-	-	-	-	-		Ciclev10007304m	scaffold_1	21918726	21922966	C_unshiu_00595:mRNA_18.1	C_unshiu_00595	85575	88636	Disease resistance protein	AGI-01	38.255
Cp1084		OOthers	-	-	-	-	-	-						C_unshiu_01090:mRNA_3.1	C_unshiu_01090	23084	26817	Sesquiterpene synthase	AGI-08	44.577
Ov0306		OOthers	-	-	-	-	-	-	SI382	Ciclev10026199m	scaffold_7	224443	227133	No					AGI-02	79.663	KmG-02	72.516	JtR-02	8.671	NAT-02S	60.000
Ov0307		OOthers	-	-	-	-	-	-		Ciclev10015790m	scaffold_2	4937047	4940138
Tf0449		OOthers	O	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305	C_unshiu_01997:mRNA_4.1	C_unshiu_01997	32539	35330	Translation initiation factor IF-3	AGI-01	0.404
Bf0200		OOthers	-	-	-	-	-	-	SI335	Ciclev10014367m	scaffold_2	29022433	29030724	C_unshiu_00022:mRNA_44.1	C_unshiu_00022	308324	316293	Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Tf0455		OOthers	O	-	-	-	-	-		Ciclev10017004m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein	AGI-06	114.172
Cp1144		OOthers	-	-	-	-	-	-		Ciclev10028086m	scaffold_8	2649991	2655756	C_unshiu_00152:mRNA_43.1	C_unshiu_00152	288550	294174	Sodium:hydrogen antiporter 1 isoform 1	AGI-08	70.995
Lp0037		OOthers	-	-	-	-	-	-		Ciclev10025045m	scaffold_7	18963487	18968140
Ov0313		OOthers	-	-	-	-	-	-		Ciclev10002372m	scaffold_5	41844984	41847835	C_unshiu_00009:mRNA_157.1	C_unshiu_00009	1013478	1016014	Diphthine synthase			KmG-09	79.072
Fb0995		OOthers	O	-	-	-	-	-	SI026	Ciclev10024677m	scaffold_7	1180019	1202408	C_unshiu_00544:mRNA_10.1	C_unshiu_00544	97318	121662	FAT domain-containing protein	AGI-02	74.555	KmG-02	82.954	JtR-02	10.215
Al0234		OOthers	-	-	-	-	-	-		Ciclev10005909m	scaffold_9	1372972	1374927	C_unshiu_00369:mRNA_20.1	C_unshiu_00369	74034	74546	Ribosomal protein L19			KmG-031	6.974			NAT-03	47.094	RP-03	3.219
Vs0005		OOthers	O	-	-	-	-	-	SI022,SI075	Ciclev10016009m	scaffold_2	33216839	33219042	C_unshiu_00002:mRNA_211.1	C_unshiu_00002	1511809	1513915	Epoxide hydrolase 2	AGI-06	31.521	KmG-02	59.329	JtR-06S	50.000	NAT-06S	50.000
Lp0043		OOthers	-	-	-	-	-	-		Ciclev10015870m	scaffold_2	35334245	35336841
Lp0103		OOthers	-	-	-	-	-	-		Ciclev10012274m	scaffold_6	16393309	16395378	C_unshiu_00332:mRNA_15.1	C_unshiu_00332	142648	144673	Pyridoxal biosynthesis lyase pdxS									RP-04	11.437
Vs0015		OOthers	-	-	-	-	-	-						C_unshiu_00001:mRNA_84.1	C_unshiu_00001	561308	564986	Mitochondrial outer membrane protein porin of 34 kDa	AGI-09	115.452	KmG-09	34.185	JtR-09S	15.823
Tf0205		OOthers	O	-	-	-	-	-	SI274	Ciclev10005062m	scaffold_9	16383851	16393557	C_unshiu_00094:mRNA_29.1	C_unshiu_00094	262934	272307	UBX domain-containing protein 1	AGI-03	46.274
Lp0109		OOthers	O	-	-	-	-	-		Ciclev10020902m	scaffold_3	17561127	17562695
Ov0412		OOthers	-	-	-	-	O	O	SI050,SI222	Ciclev10015053m	scaffold_2	31036088	31038222	C_unshiu_00143:mRNA_11.1	C_unshiu_00143	67475	69537	SEC14 cytosolic factor family protein	AGI-06	42.110	KmG-06	39.373	JtR-06S	15.372
Tf0213		OOthers	O	-	-	-	-	-		Ciclev10030571m	scaffold_4	18839546	18848948	C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative	AGI-07	48.581
Tf0224		OOthers	O	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808	C_unshiu_00104:mRNA_54.1	C_unshiu_00104	400959	412354	Zinc finger CCCH domain-containing protein 32	AGI-04	99.859
Al0323		OOthers	-	-	-	-	-	-		Ciclev10012875m	scaffold_6	18188139	18189060
Gn0008		OOthers	-	-	-	-	-	-	SI176	Ciclev10005632m	scaffold_9	17789634	17793258	C_unshiu_00098:mRNA_1.1	C_unshiu_00098	5120	17442	Phytoene desaturase	AGI-03	46.274
Ov0512		OOthers	O	-	-	-	-	-		Ciclev10006241m	scaffold_9	27198508	27199642	C_unshiu_00433:mRNA_19.1	C_unshiu_00433	116730	118286	Small heat shock protein	AGI-03	40.361	KmG-032	25.743	JtR-031		NAT-03
Ov0513		OOthers	O	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00009:mRNA_59.1	C_unshiu_00009	325807	333424	Hypothetical protein	AGI-04	38.903	KmG-04	5.110					RP-04	60.491
Ov0520		OOthers	O	-	-	-	-	-		Ciclev10029053m	scaffold_8	4712393	4713689	C_unshiu_00438:mRNA_3.1	C_unshiu_00438	34343	35619	BURP domain-containing protein	AGI-08	33.144			JtR-08	26.748
Al0401		OOthers	O	-	-	-	-	-		Ciclev10025346m	scaffold_7	13180567	13191638	C_unshiu_01698:mRNA_6.1	C_unshiu_01698	39336	40206	Hypothetical protein			KmG-02	26.204	JtR-02	-6.043	NAT-02S	22.960
Wy0011		OOthers	O	-	-	-	-	-	SI091	Ciclev10032364m	scaffold_4	24417602	24419019	C_unshiu_00001:mRNA_226.1	C_unshiu_00001	1429943	1431279	Enoyl CoA hydratase/isomerase	AGI-07	86.288
Ov0526		OOthers	-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218	C_unshiu_00201:mRNA_11.2	C_unshiu_00201	136005	138785	Aspartic proteinase nepenthesin-1			KmG-09		JtR-09S	0.758	NAT-09
Cp0052		OOthers	O	-	-	-	-	-						C_unshiu_01597:mRNA_11.1	C_unshiu_01597	29471	42354	Glucose-6-phosphate dehydrogenase 4	AGI-08	96.035
Al0416		OOthers	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00639:mRNA_12.1	C_unshiu_00639	90698	99467	Elongation factor 1-alpha	AGI-08	23.023			JtR-07	60.405	NAT-082	21.126
Al0419		OOthers	O	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181	C_unshiu_00394:mRNA_25.1	C_unshiu_00394	150531	152208	Hypothetical protein	AGI-03	17.378	KmG-09	9.593	JtR-09S	7.976
Tf0003.2		OOthers	O	-	-	-	-	-		Ciclev10002471m	scaffold_5	37808878	37811097	C_unshiu_00238:mRNA_14.1	C_unshiu_00238	116142	129209	Hypothetical protein	AGI-09	44.054
Al0421		OOthers	-	-	-	-	-	-		Ciclev10011875m	scaffold_6	11782952	11785527
Wy0032		OOthers	O	-	-	-	O	O		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein	AGI-03	46.121	KmG-032	14.572	JtR-031	12.840
Gn0060.2		OOthers	O	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508
Cp0086		OOthers	O	-	-	-	-	-		Ciclev10032381m	scaffold_4	24154856	24157188
Tf0011.2		OOthers	O	-	-	-	-	-		Ciclev10018614m	scaffold_3	11078798	11089090	C_unshiu_02207:mRNA_3.1	C_unshiu_02207	9802	19021	Hypothetical protein	AGI-05	42.191
Tf0277		OOthers	O	-	-	-	-	-		Ciclev10019282m	scaffold_3	181596	185335
Gn0062.2		OOthers	-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Gn0063		OOthers	O	-	-	-	-	-		Ciclev10019925m	scaffold_3	40937725	40942854	C_unshiu_00735:mRNA_14.1	C_unshiu_00735	99621	103733	Violaxanthin de-epoxidase	AGI-08	60.140	KmG-07	31.750
Tf0013		OOthers	O	O	O	-	O	O	SI161,SI362	Ciclev10027769m	scaffold_8	13408610	13413938	C_unshiu_01226:mRNA_1.1	C_unshiu_01226	20559	25720	DNA replication licensing factor MCM2	AGI-08	56.123
Cp1772		OOthers	-	-	-	-	-	-		Ciclev10004137m	scaffold_9	20009769	20033079
Mf0001		OOthers	-	-	-	-	-	-
Gn0067		OOthers	O	-	-	-	-	-	SI204,SI349	Ciclev10004730m	scaffold_9	22728310	22730086	C_unshiu_00295:mRNA_17.1	C_unshiu_00295	207257	208985	Lycopene beta-cyclase	AGI-03	46.274
Cp1815		OOthers	-	-	-	-	-	-		Ciclev10022373m	scaffold_3	8256398	8257886	C_unshiu_00154:mRNA_28.1	C_unshiu_00154	274299	275412	Wiskott-Aldrich syndrome protein family member 2	AGI-05	51.501
Gn0068.3	Gn0068.y	OOthers	-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894
Mf0008		OOthers	-	-	-	-	-	-						No													RP-06.2
Al0513		OOthers	-	-	-	-	-	-		Ciclev10009222m	scaffold_1	8046181	8049306	C_unshiu_00191:mRNA_21.1	C_unshiu_00191	243988	246458	Stem 28 kDa glycoprotein	AGI-01	60.031	KmG-01	41.591
Tf0292		OOthers	O	-	-	-	-	-		Ciclev10006112m	scaffold_9	31139789	31143240	C_unshiu_00003:mRNA_98.2	C_unshiu_00003	698480	711976	Protein strawberry notch	AGI-03	77.793
Cp0190		OOthers	-	-	-	-	-	-		Ciclev10023646m	scaffold_3	18648426	18650443	C_unshiu_00618:mRNA_5.1	C_unshiu_00618	20273	22297	UPF0426 protein, chloroplastic	AGI-06	27.617
Cp0214		OOthers	-	-	-	-	-	-		Ciclev10016075m	scaffold_2	29732249	29735969	C_unshiu_00073:mRNA_25.1	C_unshiu_00073	178507	182191	MOSC domain-containing protein 2, mitochondrial	AGI-06	46.660
Cp1923		OOthers	-	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297	C_unshiu_00097:mRNA_22.1	C_unshiu_00097	195825	199499	UPF0613 protein PB24D3.06c	AGI-03	22.454
Al0525		OOthers	O	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023	C_unshiu_00312:mRNA_20.2	C_unshiu_00312	114652	116351	High mobility group (HMG)-box protein	AGI-01	38.939	KmG-01	41.081
Mf0032		OOthers	-	-	-	-	-	-		Ciclev10013688m	scaffold_6	16004467	16005081
Al0605		OOthers	-	-	-	-	-	-		Ciclev10022151m	scaffold_3	41434064	41437122	C_unshiu_00194:mRNA_5.1	C_unshiu_00194	38569	41571	Eukaryotic translation initiation factor 4E	AGI-05	48.750	KmG-05S	65.384
Cp1977		OOthers	-	-	-	-	-	-		Ciclev10004968m	scaffold_9	18174858	18179752
Mf0034		OOthers	O	-	-	-	-	-		Ciclev10031304m	scaffold_4	1559490	1563887	C_unshiu_00012:mRNA_100.1	C_unshiu_00012	732963	736971	DEAD-box ATP-dependent RNA helicase 27									RP-07	73.631
If0005		OOthers	-	-	-	-	-	-		Ciclev10032438m	scaffold_4	20629463	20633356	C_unshiu_00015:mRNA_81.1	C_unshiu_00015	667011	671011	Glucosamine/galactosamine-6-phosphate isomerase family protein					JtR-07	25.458	NAT-07	15.764
Tf0325		OOthers	O	-	-	-	-	-		Ciclev10029355m	scaffold_8	6700441	6703748	C_unshiu_02974:mRNA_2.1	C_unshiu_02974	10142	13418	B-box type zinc finger family protein	AGI-08	57.386
Al0620		OOthers	-	-	-	-	-	-		Ciclev10025816m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein			KmG-02	36.964	JtR-02	17.013
Mf0057		OOthers	-	-	-	-	-	-		Ciclev10002349m	scaffold_5	42489684	42491501	No
Tf0067		OOthers	O	-	-	-	-	-	SI033,SI187	Ciclev10025950m	scaffold_7	8438702	8442381	C_unshiu_00290:mRNA_9.1	C_unshiu_00290	74194	77624	Transcription factor	AGI-02	5.104
Al0633		OOthers	O	-	-	-	-	O	SI123	Ciclev10015092m	scaffold_2	33837403	33842156	C_unshiu_00002:mRNA_126.1	C_unshiu_00002	901824	911260	Vascular plant one zinc finger protein isoform 1			KmG-06	55.857	JtR-06S	59.645	NAT-06S	51.106	RP-06.2	27.837
Tf0070		OOthers	O	-	-	-	-	-	SI277	Ciclev10002250m	scaffold_5	39748754	39753073	C_unshiu_01089:mRNA_6.1	C_unshiu_01089	22643	26826	Basic helix-loop-helix family protein	AGI-09	45.029
Al0634		OOthers	-	-	-	-	-	-		Ciclev10002460m	scaffold_5	29400846	29403554
Cp0450		OOthers	-	-	-	-	-	-		Ciclev10001900m	scaffold_5	37478179	37482337
Mf0067		OOthers	-	-	-	-	-	-		Ciclev10008855m	scaffold_1	7264569	7269002	C_unshiu_00837:mRNA_9.1	C_unshiu_00837	91807	96079	Protein phosphatase 1 regulatory subunit pprA			KmG-032	18.460	JtR-031	13.247
Al0638		OOthers	O	-	-	-	-	-		Ciclev10027380m	scaffold_7	8662041	8665543	C_unshiu_00221:mRNA_2.1	C_unshiu_00221	6658	10157	VHS domain-containing protein			KmG-07	23.435	JtR-07	17.224	NAT-07	24.049
Cp2223		OOthers	-	-	-	-	-	-		Ciclev10022371m	scaffold_3	3483334	3485637	C_unshiu_00933:mRNA_9.1	C_unshiu_00933	86958	89273	Protein LATERAL ORGAN BOUNDARIES	AGI-05	25.049
If0216		OOthers	O	-	-	-	-	-	SI174	Ciclev10015257m	scaffold_2	12876952	12881843	C_unshiu_01838:mRNA_2.1	C_unshiu_01838	23594	31186	Hypothetical protein	AGI-09	74.076	KmG-01	26.420	JtR-01S	66.382			RP-09	29.224
Tf0350		OOthers	O	-	-	-	-	-	SI132	Ciclev10019034m	scaffold_3	8914744	8921411	C_unshiu_00695:mRNA_7.1	C_unshiu_00695	71483	77987	Acetyl-coenzyme A synthetase	AGI-05	43.295
Mf0081.2	Mf0080.2	OOthers	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663
Mf0084		OOthers	-	-	-	-	-	-	SI383	Ciclev10012898m	scaffold_6	40381	43868	C_unshiu_01371:mRNA_1.1	C_unshiu_01371	17746	21242	ADP-ribosylation factor A1F	AGI-04	114.409	KmG-04	66.806	JtR-04	11.413
Mf0088		OOthers	O	-	-	-	-	-		Ciclev10001453m	scaffold_5	5104067	5106917	C_unshiu_00108:mRNA_11.1	C_unshiu_00108	101283	105493	60S ribosomal protein L3									RP-09
Edb003		OOthers	-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971	C_unshiu_01260:mRNA_4.1	C_unshiu_01260	30136	32342	Putative WRKY transcription factor 28	AGI-07	41.830
Mf0095		OOthers	O	-	-	-	-	-	SI290	Ciclev10005778m	scaffold_9	21216748	21221111	C_unshiu_00160:mRNA_34.1	C_unshiu_00160	290257	294371	Transmembrane proteins 14C, putative isoform 1			KmG-032		JtR-031	11.958			RP-03	43.323
Mf0096		OOthers	-	-	-	-	-	-	SI249,SI333	Ciclev10018252m	scaffold_2	27774863	27778271	C_unshiu_00745:mRNA_6.1	C_unshiu_00745	48150	62370	Hypothetical protein	AGI-06	60.007	KmG-06	22.141	JtR-06S	5.708	NAT-06S	10.082
Mf0099		OOthers	-	-	-	-	-	-						No							KmG-06	6.822	JtR-06S		NAT-06S
Mf0101		OOthers	-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Fb0103		OOthers	O	-	-	-	-	-	SI155	Ciclev10008255m	scaffold_1	22758712	22761740	C_unshiu_00103:mRNA_27.1	C_unshiu_00103	160138	163082	GDP-L-galactose phosphorylase	AGI-01	30.703			JtR-01S	6.418
Fb0104		OOthers	O	-	-	-	-	-		Ciclev10016358m	scaffold_2	35758546	35760859	C_unshiu_00337:mRNA_24.1	C_unshiu_00337	135198	136991	Tropinone reductase like	AGI-06	16.857							RP-06.2	16.271
Cp0717		OOthers	-	-	-	-	-	-		Ciclev10020167m	scaffold_3	45807729	45812484
Ov0013		OOthers	-	-	-	-	-	-		Ciclev10005251m	scaffold_9	18058387	18060752	C_unshiu_00556:mRNA_14.1	C_unshiu_00556	103101	105466	Caffeic acid 3-O-methyltransferase	AGI-03	50.691	KmG-032	18.852	JtR-031	11.918			RP-03	38.986
Ov0015		OOthers	O	-	-	-	-	-	SI304	Ciclev10026223m	scaffold_7	8255046	8256442	C_unshiu_02827:mRNA_2.1	C_unshiu_02827	15986	17224	Stem 28 kDa glycoprotein	AGI-02	34.494	KmG-02	35.126	JtR-02	19.319
Al0020		OOthers	-	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase			KmG-04
Tf0411		OOthers	O	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265	C_unshiu_00523:mRNA_15.1	C_unshiu_00523	100297	104594	Putative transcription factor PosF21	AGI-05	48.613
Lp0004		OOthers	-	-	-	-	-	-		Ciclev10026144m	scaffold_7	15376818	15378771	C_unshiu_00703:mRNA_1.1	C_unshiu_00703	2793	4693	C6HC-type zinc finger RING/U-box protein	AGI-02	20.292	KmG-02	15.368					RP-02	11.119
Cp0921		OOthers	-	-	-	-	-	-		Ciclev10022149m	scaffold_3	25448858	25451858
Ov0112		OOthers	-	-	-	-	-	-		Ciclev10021050m	scaffold_3	33252463	33253730	C_unshiu_01571:mRNA_4.1	C_unshiu_01571	43836	45084	Sulfotransferase			KmG-05S	42.335					RP-05	53.076
Tf0146		OOthers	-	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265
Cp0933		OOthers	-	-	-	-	-	-		Ciclev10019734m	scaffold_3	49821906	49825730	C_unshiu_00014:mRNA_26.1	C_unshiu_00014	159299	162719	Hypothetical protein	AGI-03	47.283
Cp0973		OOthers	-	-	-	-	-	-		Ciclev10013409m	scaffold_6	8193393	8195764	C_unshiu_00407:mRNA_4.1	C_unshiu_00407	55425	57717	Thioredoxin F-type, chloroplastic
Ov0122		OOthers	-	-	-	-	-	-		Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_01535:mRNA_2.2	C_unshiu_01535	14018	19080	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase			KmG-05S	65.738	JtR-05	41.268
Al0207		OOthers	-	-	-	-	-	-		Ciclev10020027m	scaffold_3	4366802	4370111	C_unshiu_00186:mRNA_18.1	C_unshiu_00186	178635	181547	SNF1-related protein kinase regulatory subunit gamma-1	AGI-09	84.537			JtR-09S	9.929
Lp0023		OOthers	-	-	-	-	-	-
Ov0128		OOthers	-	-	-	-	-	-		Ciclev10015870m	scaffold_2	35334245	35336841
Al0247		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10029281m	scaffold_8	2227827	2230752	C_unshiu_00024:mRNA_15.1	C_unshiu_00024	104182	106823	Somatic embryogenesis receptor kinase 1	AGI-08	77.316	KmG-08	91.101			NAT-082	73.850
Ov0423		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10023016m	scaffold_3	42954362	42955051	C_unshiu_00152:mRNA_28.1	C_unshiu_00152	189707	190632	Hypothetical protein	AGI-05	55.522
Al0422		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662	C_unshiu_00032:mRNA_34.1	C_unshiu_00032	369423	370581	Subtilisin inhibitor 1, putative	AGI-08	93.695
Mf0058		T3 or more alleleic model	-	-	-	-	-	-		Ciclev10022378m	scaffold_3	46818817	46822856	C_unshiu_00053:mRNA_58.1	C_unshiu_00053	481338	485184	Nitrogen regulatory protein P-II	AGI-08	57.196			JtR-05	39.516
Lp0034		ULess informative for main cultivars	O	-	-	-	-	-						C_unshiu_00087:mRNA_54.1	C_unshiu_00087	395005	398280	Peroxisomal membrane protein 13
Ov0315		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10013467m	scaffold_6	23430375	23436161	C_unshiu_00098:mRNA_32.2	C_unshiu_00098	207615	213748	Putative nuclear matrix constituent protein 1-like protein			KmG-04	7.092
Ov0318		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012779m	scaffold_6	19405285	19407278	C_unshiu_00273:mRNA_20.1	C_unshiu_00273	103250	105183	40S ribosomal protein S5
Vs0006		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10025343m	scaffold_7	19024295	19026021	C_unshiu_00468:mRNA_22.1	C_unshiu_00468	132124	133922	Cytochrome P450 78A4	AGI-02	27.491			JtR-02	50.216	NAT-02S	3.328
Ov0322		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10003485m	scaffold_5	36398988	36399239	C_unshiu_00241:mRNA_9.1	C_unshiu_00241	39546	40639	Microsomal signal peptidase 12 kDa protein	AGI-09	50.810	KmG-09	42.179	JtR-09S	62.873			RP-09	70.369
Cp0007		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10022090m	scaffold_3	46924692	46927004
Ov0509		ULess informative for main cultivars	O	-	-	-	-	-						No					AGI-09	102.280							RP-09	21.445
Ov0525		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	C_unshiu_01875:mRNA_4.1	C_unshiu_01875	35983	39196	ADP/ATP translocase 1	AGI-06	91.522							SA-06	27.092
Wy0035		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10014857m	scaffold_2	31148849	31150616	C_unshiu_00292:mRNA_13.1	C_unshiu_00292	110620	112650	FAD-binding Berberine family protein	AGI-06	36.863
Gn0064		ULess informative for main cultivars	O	-	-	-	-	-	SI144,SI380	Ciclev10019364m	scaffold_3	29351854	29354190	C_unshiu_00549:mRNA_6.1	C_unshiu_00549	39588	41921	9-cis-epoxycarotenoid dioxygenase 1	AGI-05	42.191							RP-05	51.531
Gn0069		ULess informative for main cultivars	O	-	-	-	-	-	SI086,SI375	Ciclev10008410m	scaffold_1	10946316	10949617	C_unshiu_00201:mRNA_19.1	C_unshiu_00201	212151	227232	Lycopene epsilon cyclase	AGI-01	57.863
Mf0007		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10008907m	scaffold_1	17471330	17472833	C_unshiu_00044:mRNA_52.1	C_unshiu_00044	424343	425685	NADPH-dependent codeinone reductase-like protein
Al0514		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme			KmG-04	32.217
Mf0015		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10000510m	scaffold_5	35125019	35129817	No
Cp0221		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10016539m	scaffold_2	30648531	30649856	C_unshiu_00125:mRNA_61.1	C_unshiu_00125	360098	361069	Photosystem I reaction center subunit III
Bf0003		ULess informative for main cultivars	O	-	-	-	-	-	SI354	Ciclev10011720m	scaffold_6	16246773	16250769	C_unshiu_00390:mRNA_6.1	C_unshiu_00390	75799	78947	Vacuolar cation/proton exchanger 3									RP-04	10.253
Ov0018		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00082:mRNA_34.1	C_unshiu_00082	267163	269630	Elongation factor 1-alpha
Al0201		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10014752m	scaffold_2	32780830	32782885	C_unshiu_00153:mRNA_49.1	C_unshiu_00153	346248	348256	Armadillo/beta-catenin-like repeat family protein, expressed
Bf0164		ULess informative for main cultivars	O	-	-	-	-	-	SI263	Ciclev10000615m	scaffold_5	43060442	43066562	C_unshiu_00370:mRNA_39.2	C_unshiu_00370	217887	223455	Pyrophosphate-dependent phosphofructokinase alpha subunit	AGI-09	21.471					NAT-09	111.981	RP-09	94.065
Af1255			-	-	-	-	-	-		Ciclev10006003m	scaffold_9	28061221	28063450
Af1520			-	-	-	-	-	-		Ciclev10015124m	scaffold_2	7360380	7367946
Bf0180			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Cp1050			-	-	-	-	-	-		Ciclev10032471m	scaffold_4	1537835	1540818
Fb0346			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Ov0129	Ov0129.k		-	-	-	-	-	-		Ciclev10030928m	scaffold_4	2717014	2719856
Tf0166			-	-	-	-	-	-	SI156	Ciclev10000524m	scaffold_5	19682579	19686163	C_unshiu_00050:mRNA_13.1	C_unshiu_00050	140837	153470	Hypothetical protein	AGI-09	101.351
Tf0442			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Af0001			-	-	-	-	-	-		Ciclev10033102m	scaffold_4	25190682	25192326
Af1256			-	-	-	-	-	-		Ciclev10008233m	scaffold_1	940514	942972
Af1521			-	-	-	-	-	-		Ciclev10004680m	scaffold_9	9799746	9804461
Al0216			-	-	-	-	-	-		Ciclev10007632m	scaffold_1	7359982	7369305
Bf0182			O	-	-	-	-	-		Ciclev10009454m	scaffold_1	17831333	17834889	C_unshiu_00429:mRNA_12.1	C_unshiu_00429	90883	94296	3-deoxy-D-manno-octulosonate cytidylyltransferase	AGI-01	47.439
Cp1056			-	-	-	-	-	-		Ciclev10012459m	scaffold_6	20024370	20027538
Fb0357			O	-	-	-	-	-	SI384	Ciclev10001633m	scaffold_5	40550222	40554434	C_unshiu_00889:mRNA_6.1	C_unshiu_00889	44175	51825	Hypothetical protein	AGI-09	39.104
Lp0025			-	-	-	-	-	-		Ciclev10009567m	scaffold_1	25816949	25818472
Tf0167			-	-	-	-	-	-	SI230,SI241,SI247	Ciclev10030998m	scaffold_4	17143350	17147918	C_unshiu_00478:mRNA_2.1	C_unshiu_00478	19232	27824	Sigma factor	AGI-07	46.244
Tf0443			-	-	-	-	-	-		Ciclev10012193m	scaffold_6	5886744	5892919
Af0002			-	-	-	-	-	-		Ciclev10026803m	scaffold_7	9468245	9468907
Af1257			-	-	-	-	-	-		Ciclev10033061m	scaffold_4	25059045	25061910
Af1522			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Bf0183			O	-	-	-	-	-	SI308	Ciclev10005208m	scaffold_9	5254416	5256826	C_unshiu_01106:mRNA_9.1	C_unshiu_01106	77275	79234	Hypothetical protein
Cp1067			-	-	-	-	-	-		Ciclev10014572m	scaffold_2	188504	192741
Lp0026			-	-	-	-	-	-		Ciclev10030880m	scaffold_4	3323209	3331825
Ov0302	Ov0301.2		-	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor
Tf0444			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797
Af0003			-	-	-	-	-	-		Ciclev10017107m	scaffold_2	11373565	11374539
Af1258			-	-	-	-	-	-		Ciclev10029223m	scaffold_8	24591409	24594117
Af1523			-	-	-	-	-	-		Ciclev10031240m	scaffold_4	6231492	6235447
Al0218.2			-	-	-	-	-	-		Ciclev10022061m	scaffold_3	1203357	1206483
Bf0184			O	-	-	-	-	-		Ciclev10021248m	scaffold_3	24893551	24898675	C_unshiu_00286:mRNA_27.1	C_unshiu_00286	216376	220366	Cysteine protease ATG4B	AGI-05	41.306
Cp1081			-	-	-	-	-	-		Ciclev10024992m	scaffold_7	7826603	7829404
Fb0365			O	-	-	-	-	-	SI036,SI320	Ciclev10026391m	scaffold_7	20872462	20874659	C_unshiu_00098:mRNA_41.1	C_unshiu_00098	264947	272086	Hypothetical protein	AGI-02	31.596	KmG-02		JtR-02	-4.953
Lp0027			-	-	-	-	-	-		Ciclev10032174m	scaffold_4	14967254	14971449
Ov0303			-	-	-	-	-	-		Ciclev10011600m	scaffold_6	25160851	25164999
Tf0169			-	-	-	-	-	-		Ciclev10004115m	scaffold_9	2284484	2302268
Tf0445			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Af0004			O	-	-	-	-	-		Ciclev10025125m	scaffold_7	8447414	8453714	C_unshiu_00290:mRNA_10.1	C_unshiu_00290	83615	110154	Hypothetical protein	AGI-02	2.847
Af1259			-	-	-	-	-	-		Ciclev10030701m	scaffold_4	15528851	15538252
Af1524			-	-	-	-	-	-		Ciclev10025757m	scaffold_7	9325319	9327565
Al0219			-	-	-	-	-	-		Ciclev10028236m	scaffold_8	793820	798369
Bf0189			-	-	-	-	-	-						C_unshiu_00008:mRNA_66.1	C_unshiu_00008	372226	374586	Ferritin									RP-04	15.774
Fb0369			-	-	-	-	-	-		Ciclev10019885m	scaffold_3	7792188	7795727	C_unshiu_01545:mRNA_3.1	C_unshiu_01545	37559	39424	AT-rich interactive domain-containing protein 2	AGI-05	44.172	KmG-05S	30.809	JtR-05	16.246
Lp0028			-	-	-	-	-	-		Ciclev10014842m	scaffold_2	22362548	22366644
Ov0304			-	-	-	-	-	-		Ciclev10000702m	scaffold_5	6482366	6484923
Tf0170			-	-	-	-	-	-		Ciclev10005681m	scaffold_9	31237089	31243866
Tf0446			-	-	-	-	-	-		Ciclev10020000m	scaffold_3	42990251	42995979
Af0005			-	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181
Af1260			-	-	-	-	-	-		Ciclev10001188m	scaffold_5	38869666	38875561
Af1525			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Al0220			-	-	-	-	-	-		Ciclev10008097m	scaffold_1	3683537	3688814
Bf0193			O	-	-	-	-	-	SI100,SI109	Ciclev10014811m	scaffold_2	35970577	35973973	C_unshiu_00077:mRNA_15.2	C_unshiu_00077	102078	105358	Scarecrow-like transcription factor PAT1									RP-06.2	14.065
Cp1085			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658	C_unshiu_00025:mRNA_42.1	C_unshiu_00025	337060	338142	Putative geranylgeranyl pyrophosphate synthase 3-like	AGI-02	70.082
Fb0372			-	-	-	-	-	-	SI343,SI052	Ciclev10002666m	scaffold_5	35123213	35124730	C_unshiu_00042:mRNA_34.1	C_unshiu_00042	237022	238272	Ubiquitin-fold modifier-conjugating enzyme 1	AGI-09	59.896
Lp0029			-	-	-	-	-	-		Ciclev10003645m	scaffold_5	329518	331024
Tf0171			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0447			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Af0006			-	-	-	-	-	-		Ciclev10001011m	scaffold_5	36883103	36887975
Af1261			-	-	-	-	-	-		Ciclev10027978m	scaffold_8	20321003	20329872
Af1526			-	-	-	-	-	-		Ciclev10001454m	scaffold_5	38852547	38855263
Al0221			-	-	-	-	-	-
Bf0195			-	-	-	-	-	-	SI369	Ciclev10000780m	scaffold_5	31069237	31075092	C_unshiu_00422:mRNA_5.1	C_unshiu_00422	35322	40511	Sodium/hydrogen exchanger 2	AGI-09	74.076
Cp1086			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Fb0373			O	-	-	-	-	-		Ciclev10000030m	scaffold_5	6404463	6435349	C_unshiu_00034:mRNA_15.1	C_unshiu_00034	150102	178260	ATP-dependent RNA helicase DHX29	AGI-09	85.810	KmG-09	22.909	JtR-09S	7.995			RP-09	0.104
Lp0030			-	-	-	-	-	-		Ciclev10031831m	scaffold_4	23185703	23187916
Tf0172			O	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176	C_unshiu_00496:mRNA_5.1	C_unshiu_00496	48069	50951	Auxin-induced protein IAA6	AGI-02	10.638
Tf0448			-	-	-	-	-	-		Ciclev10026715m	scaffold_7	252320	254049
Af0007			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Af1262			-	-	-	-	-	-		Ciclev10009571m	scaffold_1	28424576	28427136
Af1527			-	-	-	-	-	-		Ciclev10033122m	scaffold_4	17175041	17177917
Al0222			-	-	-	-	-	-		Ciclev10015548m	scaffold_2	30607996	30610863
Bf0197			-	-	-	-	-	-		Ciclev10025476m	scaffold_7	5654376	5658039
Cp1093			-	-	-	-	-	-		Ciclev10009636m	scaffold_1	16696979	16699623
Fb0374			-	-	-	-	-	-		Ciclev10002014m	scaffold_5	6777322	6781162
Lp0031			-	-	-	-	-	-		Ciclev10027944m	scaffold_8	22261408	22266208	C_unshiu_00639:mRNA_5.1	C_unshiu_00639	45321	49901	N-terminal isoform 1	AGI-08	9.183
Tf0173			O	-	-	-	-	-		Ciclev10015413m	scaffold_2	26097343	26099320	C_unshiu_00259:mRNA_35.1	C_unshiu_00259	219790	227265	Hypothetical protein									RP-06.1	28.110
Af0008			-	-	-	-	-	-		Ciclev10017323m	scaffold_2	32749064	32749699
Af1263			-	-	-	-	-	-		Ciclev10005448m	scaffold_9	28494348	28496251
Af1528			-	-	-	-	-	-		Ciclev10009892m	scaffold_1	1676368	1677018
Al0223			-	-	-	-	-	-		Ciclev10011771m	scaffold_6	17438270	17440122	C_unshiu_00008:mRNA_127.1	C_unshiu_00008	890026	891371	CBL-interacting serine/threonine-protein kinase 11									RP-04	17.965
Fb0389			-	-	-	-	-	-		Ciclev10014121m	scaffold_2	25179668	25188103	C_unshiu_00087:mRNA_31.1	C_unshiu_00087	209767	218135	Putative pesticidal crystal cry8Ba-like	AGI-08	56.850
Ov0308			-	-	-	-	-	-		Ciclev10032476m	scaffold_4	16730150	16735004
Tf0175			-	-	-	-	-	-		Ciclev10010825m	scaffold_1	5054551	5056146
Tf0450			-	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Af0009			-	-	-	-	-	-		Ciclev10024461m	scaffold_3	50406028	50412944
Af1264			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Af1529			-	-	-	-	-	-		Ciclev10005711m	scaffold_9	21228791	21231253
Bf0201			-	-	-	-	-	-		Ciclev10015180m	scaffold_2	29370560	29376244
Cp1113			-	-	-	-	-	-		Ciclev10004638m	scaffold_9	987368	992630
Fb0423			O	-	-	-	-	-		Ciclev10020919m	scaffold_3	867235	871452
Lp0033			-	-	-	-	-	-		Ciclev10016127m	scaffold_2	30923398	30926574
Ov0309			-	-	-	-	-	-		Ciclev10022230m	scaffold_3	8078609	8083078
Tf0176			-	-	-	-	-	-		Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein									RP-01
Tf0451			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Af0010			-	-	-	-	-	-		Ciclev10004080m	scaffold_5	40297492	40299711
Af1265			-	-	-	-	-	-		Ciclev10031646m	scaffold_4	22789104	22792252
Af1530			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Al0225			-	-	-	-	-	-		Ciclev10001539m	scaffold_5	41093725	41097411	C_unshiu_01543:mRNA_6.1	C_unshiu_01543	34106	35343	DNA glycosylase superfamily protein			KmG-01	9.277
Bf0202			-	-	-	-	-	-		Ciclev10000607m	scaffold_5	24103753	24107361	C_unshiu_00011:mRNA_55.1	C_unshiu_00011	511309	514460	Protein ETHYLENE INSENSITIVE 3									RP-09	27.641
Cp1114			-	-	-	-	-	-		Ciclev10004644m	scaffold_9	870926	875408
Fb0478			-	-	-	-	-	-		Ciclev10008010m	scaffold_1	14592248	14596429	C_unshiu_00071:mRNA_18.1	C_unshiu_00071	196512	200666	Beta-glucosidase 44	AGI-01	61.025
Ov0310			-	-	-	-	-	-		Ciclev10023404m	scaffold_3	48463395	48465325	C_unshiu_00026:mRNA_46.1	C_unshiu_00026	334715	336716	Lanatoside 15-O-acetylesterase			KmG-01	21.291	JtR-01S	61.287
Tf0177			-	-	-	-	-	-	SI133	Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein
Tf0452			-	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Af0011			-	-	-	-	-	-		Ciclev10025929m	scaffold_7	11357990	11362560
Af1266			-	-	-	-	-	-		Ciclev10032367m	scaffold_4	8400378	8404853
Af1531			-	-	-	-	-	-		Ciclev10008796m	scaffold_1	4984340	4987674
Al0226			-	-	-	-	-	-		Ciclev10012002m	scaffold_6	2571941	2573984
Bf0203			-	-	-	-	-	-		Ciclev10022162m	scaffold_3	42410482	42413511
Cp1115			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Fb0708			-	-	-	-	-	-		Ciclev10005455m	scaffold_9	31237089	31243737	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	74.195			JtR-032	19.857
Lp0035			-	-	-	-	-	-		Ciclev10005111m	scaffold_9	27259813	27263097
Ov0311			-	-	-	-	-	-		Ciclev10022001m	scaffold_3	18341166	18342395	C_unshiu_00417:mRNA_9.1	C_unshiu_00417	93426	94543	Kunitz trypsin inhibitor			KmG-04	10.598			NAT-09	82.730
Tf0178			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Af0012			-	-	-	-	-	-		Ciclev10006108m	scaffold_9	2458793	2459573
Af1267			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Af1532			-	-	-	-	-	-		Ciclev10026374m	scaffold_7	3988366	3989679
Al0227			-	-	-	-	-	-		Ciclev10001654m	scaffold_5	42217935	42222257
Bf0204			-	-	-	-	-	-	SI326	Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic									RP-02.2	9.835
Fb0722			-	-	-	-	-	-		Ciclev10008390m	scaffold_1	16098039	16100795
Lp0036			-	-	-	-	-	-		Ciclev10012725m	scaffold_6	12998055	13001834
Ov0312			-	-	-	-	-	-		Ciclev10018858m	scaffold_3	1344192	1349935	C_unshiu_00541:mRNA_19.1	C_unshiu_00541	170170	175878	Spastin									SA-09	8.022
Tf0181			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Af0013			-	-	-	-	-	-		Ciclev10023060m	scaffold_3	13416061	13417219
Af1268			-	-	-	-	-	-		Ciclev10011546m	scaffold_6	22523213	22529556
Af1533			-	-	-	-	-	-		Ciclev10009600m	scaffold_1	22118203	22120791
Al0228			-	-	-	-	-	-		Ciclev10009018m	scaffold_1	26206063	26208427	C_unshiu_00315:mRNA_25.1	C_unshiu_00315	212819	220361	Serine/threonine-protein kinase HT1					JtR-034	7.115
Bf0205			O	-	-	-	-	-	SI236	Ciclev10025925m	scaffold_7	3541924	3543863	C_unshiu_00301:mRNA_11.1	C_unshiu_00301	55570	57462	WRKY
Fb0827			O	-	-	-	-	-	SI215,SI301	Ciclev10004432m	scaffold_9	2353442	2357780	C_unshiu_00394:mRNA_9.1	C_unshiu_00394	41719	45690	Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase	AGI-03	19.017	KmG-031	16.544	JtR-034
Tf0183			-	-	-	-	-	-		Ciclev10021488m	scaffold_3	30873886	30877367
Tf0456			-	-	-	-	-	-		Ciclev10020156m	scaffold_3	44858333	44862278
Af0014			-	-	-	-	-	-		Ciclev10023139m	scaffold_3	253879	254627
Af1269			-	-	-	-	-	-		Ciclev10009375m	scaffold_1	27043124	27045483
Af1534			-	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Al0229			-	-	-	-	-	-		Ciclev10018463m	scaffold_3	49675354	49684423
Bf0207			-	-	-	-	-	-		Ciclev10014190m	scaffold_2	22005783	22011411
Lp0038			-	-	-	-	-	-		Ciclev10029808m	scaffold_8	6686602	6688894
Vs0001			-	-	-	-	-	-
Af0015			-	-	-	-	-	-		Ciclev10019449m	scaffold_3	44021779	44027536	C_unshiu_00217:mRNA_10.1	C_unshiu_00217	86393	91294	Hypothetical protein	AGI-05	54.268
Af1270			-	-	-	-	-	-		Ciclev10011405m	scaffold_6	17589895	17593051
Af1535			-	-	-	-	-	-		Ciclev10007633m	scaffold_1	23814115	23817728
Al0230			-	-	-	-	-	-
Bf0212			-	-	-	-	-	-	SI332	Ciclev10016442m	scaffold_2	9206686	9211152	C_unshiu_00004:mRNA_52.2	C_unshiu_00004	401860	406444	Carbonate dehydratase	AGI-06	117.593
Cp1163			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Fb1121	Fb1121.lg		-	-	-	-	-	-		Ciclev10014991m	scaffold_2	22635764	22640239
Lp0039			-	-	-	-	-	-		Ciclev10004396m	scaffold_9	22309970	22314448
Tf0185			O	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Af0016			-	-	-	-	-	-		Ciclev10022861m	scaffold_3	25074163	25075916	C_unshiu_00117:mRNA_7.1	C_unshiu_00117	38949	40765	Hypothetical protein	AGI-05	41.306
Af1271			-	-	-	-	-	-		Ciclev10025653m	scaffold_7	13323583	13328683
Af1536			-	-	-	-	-	-		Ciclev10021945m	scaffold_3	6113049	6116055
Al0231			-	-	-	-	-	-		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof									RP-06.1	7.272
Bf0213			-	-	-	-	-	-	SI097	Ciclev10000820m	scaffold_5	37693882	37699178	C_unshiu_00238:mRNA_2.1	C_unshiu_00238	14475	19398	DnaJ domain protein									RP-09	77.126
Cp1177			-	-	-	-	-	-		Ciclev10006006m	scaffold_9	4116356	4117315
Fb1134.2			-	-	-	-	-	-		Ciclev10030474m	scaffold_4	9547707	9559498	C_unshiu_00140:mRNA_14.1	C_unshiu_00140	164689	176715	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5	AGI-07	38.546
Ov0316			-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43					JtR-05	31.749
Tf0186			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Af0017			-	-	-	-	-	-		Ciclev10029358m	scaffold_8	313112	317158
Af1272			-	-	-	-	-	-		Ciclev10019689m	scaffold_3	24796351	24800588
Af1537			-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377
Al0232			-	-	-	-	-	-		Ciclev10026186m	scaffold_7	4997089	4999255
Bf0215			-	-	-	-	-	-		Ciclev10022088m	scaffold_3	50793520	50795340
Cp1184			-	-	-	-	-	-		Ciclev10005685m	scaffold_9	17809957	17817998
Fb1170			-	-	-	-	-	-		Ciclev10014845m	scaffold_2	23829862	23832918
Ov0317	Ov0316.2		-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516
Tf0187			-	-	-	-	-	-		Ciclev10013228m	scaffold_6	1950121	1950908
Vs0004			-	-	-	-	-	-		Ciclev10021761m	scaffold_3	2078691	2083111	C_unshiu_00490:mRNA_23.1	C_unshiu_00490	182148	190847	Nucleosome assembly protein			KmG-06	51.244
Af0018			-	-	-	-	-	-		Ciclev10000947m	scaffold_5	40691801	40694522
Af1273			-	-	-	-	-	-		Ciclev10024624m	scaffold_3	12214029	12215007
Af1538			-	-	-	-	-	-		Ciclev10002528m	scaffold_5	33921984	33926087
Bf0216			-	-	-	-	-	-		Ciclev10031058m	scaffold_4	15058920	15066775
Cp1196			-	-	-	-	-	-		Ciclev10031889m	scaffold_4	19626061	19629792
Fb1227			-	-	-	-	-	-		Ciclev10004375m	scaffold_9	3367718	3376062	C_unshiu_00051:mRNA_60.1	C_unshiu_00051	463042	471084	Chloride channel protein	AGI-03	19.631
Lp0042			-	-	-	-	-	-		Ciclev10028234m	scaffold_8	21342050	21345004
Tf0188			-	-	-	-	-	-		Ciclev10012285m	scaffold_6	15774976	15777653
Af1003			O	-	-	-	-	-		Ciclev10001093m	scaffold_5	15605852	15610028	C_unshiu_00533:mRNA_20.1	C_unshiu_00533	131430	141111	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	AGI-02	22.436
Af1274			-	-	-	-	-	-		Ciclev10009370m	scaffold_1	3152548	3153983
Af1539			-	-	-	-	-	-		Ciclev10016688m	scaffold_2	10097308	10100347
Al0235			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926
Bf0218			O	-	-	-	-	-	SI232	Ciclev10000452m	scaffold_5	36036990	36048487	C_unshiu_00406:mRNA_20.1	C_unshiu_00406	134274	145322	Isoamylase	AGI-09	53.205	KmG-09	37.847					RP-09	70.349
Fb1430	Fb1430.lg		O	-	-	-	-	-		Ciclev10005994m	scaffold_9	1879675	1880523	C_unshiu_00102:mRNA_3.1	C_unshiu_00102	16507	17334	60S ribosome subunit biogenesis protein NIP7 homolog	AGI-03
Ov0319			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein			KmG-032	19.158
Tf0189			-	-	-	-	-	-		Ciclev10001738m	scaffold_5	21379384	21385293
Af1004			-	-	-	-	-	-		Ciclev10008926m	scaffold_1	24426760	24434342
Af1275			-	-	-	-	-	-		Ciclev10028274m	scaffold_8	13035174	13037307
Af1540			-	-	-	-	-	-		Ciclev10006242m	scaffold_9	477388	478920
Al0236			-	-	-	-	-	-		Ciclev10014723m	scaffold_2	32806565	32812384
Bf0219			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Cp1201			-	-	-	-	-	-		Ciclev10031397m	scaffold_4	19416844	19420948
Fb1505			-	-	-	-	-	-
Lp0044			-	-	-	-	-	-		Ciclev10032981m	scaffold_4	23618424	23622719
Ov0320			-	-	-	-	-	-		Ciclev10005968m	scaffold_9	27640074	27641178	C_unshiu_00252:mRNA_13.1	C_unshiu_00252	89281	90198	21 kDa protein									RP-03	56.919
Tf0191			-	-	-	-	-	-		Ciclev10015847m	scaffold_2	5821401	5825173
Vs0007			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Af1005			-	-	-	-	-	-		Ciclev10012491m	scaffold_6	20715590	20719704
Af1276			-	-	-	-	-	-		Ciclev10022100m	scaffold_3	7080222	7081373
Af1541			-	-	-	-	-	-		Ciclev10031567m	scaffold_4	10510018	10517939
Al0237			-	-	-	-	-	-		Ciclev10026739m	scaffold_7	5523075	5524475
Bf0221			-	-	-	-	-	-		Ciclev10005970m	scaffold_9	24195180	24198282	C_unshiu_00132:mRNA_22.1	C_unshiu_00132	211597	223530	Hypothetical protein	AGI-03	47.887							RP-03	37.193
Cp1213			-	-	-	-	-	-		Ciclev10015476m	scaffold_2	11598999	11601307
Fb1567			-	-	-	-	-	-		Ciclev10022690m	scaffold_3	50637673	50640392	No					AGI-05	103.212
Lp0045			-	-	-	-	-	-
Ov0321			-	-	-	-	-	-		Ciclev10018918m	scaffold_3	42776479	42784038
Tf0193			-	-	-	-	-	-		Ciclev10007849m	scaffold_1	27167271	27171073
Vs0008			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892
Af1006			-	-	-	-	-	-		Ciclev10005512m	scaffold_9	24661109	24664797
Af1277			-	-	-	-	-	-		Ciclev10030804m	scaffold_4	23811511	23814763
Af1542			-	-	-	-	-	-		Ciclev10015820m	scaffold_2	10424779	10427904
Al0238			-	-	-	-	-	-		Ciclev10017077m	scaffold_2	8494369	8496454
Bf0224			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Fb1611			-	-	-	-	-	-	SI071	Ciclev10014570m	scaffold_2	27030188	27034752	No
Lp0046			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658
Tf0194			-	-	-	-	-	-		Ciclev10018639m	scaffold_3	42996886	43001548
Vs0009			-	-	-	-	-	-
Af1007			-	-	-	-	-	-		Ciclev10021398m	scaffold_3	12814731	12817148
Af1278			-	-	-	-	-	-		Ciclev10009508m	scaffold_1	6903804	6908960
Af1543			-	-	-	-	-	-		Ciclev10022165m	scaffold_3	42180650	42183843
Bf0225			-	-	-	-	-	-		Ciclev10016071m	scaffold_2	3460370	3462174
Cp1221			-	-	-	-	-	-		Ciclev10016867m	scaffold_2	13627656	13629444
Fb1678			O	-	-	-	-	-		Ciclev10022198m	scaffold_3	6000266	6002833	C_unshiu_00997:mRNA_6.2	C_unshiu_00997	44420	46811	Putative axial regulator YABBY 2	AGI-05	45.297
Lp0047			-	-	-	-	-	-
Ov0323			-	-	-	-	-	-		Ciclev10005490m	scaffold_9	5549195	5553148
Vs0010			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Af1008			-	-	-	-	-	-		Ciclev10006973m	scaffold_9	2470085	2471703
Af1279			-	-	-	-	-	-		Ciclev10031302m	scaffold_4	14510787	14516311
Af1544			-	-	-	-	-	-		Ciclev10026596m	scaffold_7	2622969	2624754
Cp1223			-	-	-	-	-	-		Ciclev10019033m	scaffold_3	50559205	50563745
Fb1685			-	-	-	-	-	-		Ciclev10015934m	scaffold_2	35693249	35696515
Lp0048			-	-	-	-	-	-		Ciclev10022383m	scaffold_3	46374292	46377587
Tf0196			-	-	-	-	-	-		Ciclev10025815m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein	AGI-02	4.033
Vs0011			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Af1009			-	-	-	-	-	-		Ciclev10015365m	scaffold_2	35818327	35822366
Af1281			-	-	-	-	-	-		Ciclev10029683m	scaffold_8	20366637	20367616
Af1545			-	-	-	-	-	-		Ciclev10032524m	scaffold_4	2153718	2155194
Al0241			-	-	-	-	-	-		Ciclev10012288m	scaffold_6	17857849	17860063
Bf0229			-	-	-	-	-	-	SI253	Ciclev10004848m	scaffold_9	17242218	17245901	C_unshiu_00122:mRNA_16.1	C_unshiu_00122	118693	122329	Selenium binding protein	AGI-03	46.274							RP-03	37.885
Cp1224			-	-	-	-	-	-		Ciclev10016280m	scaffold_2	23891814	23893095
Fb1751			-	-	-	-	-	-	SI264	Ciclev10025011m	scaffold_7	7977527	7984425	C_unshiu_00121:mRNA_40.1	C_unshiu_00121	250743	257054	Protein STRUBBELIG-RECEPTOR FAMILY 8
Lp0049	Lp0049.k		-	-	-	-	-	-		Ciclev10021491m	scaffold_3	50736750	50739959
Ov0325			-	-	-	-	-	-		Ciclev10016692m	scaffold_2	35180594	35182774	C_unshiu_00048:mRNA_54.1	C_unshiu_00048	359734	361893	SGS domain-containing protein							NAT-082	48.374
Tf0197			-	-	-	-	-	-		Ciclev10012447m	scaffold_6	14804828	14808139
Af1010			-	-	-	-	-	-		Ciclev10014106m	scaffold_2	31656510	31666206
Af1282			-	-	-	-	-	-
Af1546			-	-	-	-	-	-		Ciclev10016821m	scaffold_2	12406078	12408794
Al0242			-	-	-	-	-	-		Ciclev10032030m	scaffold_4	3437577	3441367
Bf0232			-	-	-	-	-	-		Ciclev10031191m	scaffold_4	21861774	21865635	C_unshiu_01346:mRNA_3.1	C_unshiu_01346	18206	22054	T-complex protein 1 subunit delta	AGI-07	67.250							RP-07	6.705
Cp1225			-	-	-	-	-	-		Ciclev10025660m	scaffold_7	17208075	17211871
Fb1784			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936	C_unshiu_02466:mRNA_2.1	C_unshiu_02466	2597	4055	Class I chitinase									RP-05	52.311
Lp0101			-	-	-	-	-	-		Ciclev10002394m	scaffold_5	15991108	15996585
Ov0326			-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218
Vs0013			-	-	-	-	-	-
Af1011			O	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243	C_unshiu_00009:mRNA_53.1	C_unshiu_00009	289462	299397	Hypothetical protein									RP-04	60.491
Af1283			-	-	-	-	-	-		Ciclev10016366m	scaffold_2	29757723	29762309
Af1547			-	-	-	-	-	-		Ciclev10005907m	scaffold_9	3864764	3867933
Al0243			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Cp1252			-	-	-	-	-	-		Ciclev10000164m	scaffold_5	30617746	30629437
Fb1916			-	-	-	-	-	-	SI336	Ciclev10016275m	scaffold_2	12043969	12046230	C_unshiu_00026:mRNA_12.1	C_unshiu_00026	110679	112686	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4									RP-06.1	24.027
Tf0199			-	-	-	-	-	-	SI023,SI157	Ciclev10000697m	scaffold_5	30994812	30999834	C_unshiu_00422:mRNA_12.1	C_unshiu_00422	116754	121159	Serine/threonine-protein kinase isoform 2
Af1012			-	-	-	-	-	-		Ciclev10026672m	scaffold_7	16270394	16272027
Af1285			-	-	-	-	-	-		Ciclev10010796m	scaffold_1	12807597	12808725
Af1548			-	-	-	-	-	-		Ciclev10012731m	scaffold_6	25114213	25116604
Al0244			-	-	-	-	-	-		Ciclev10015497m	scaffold_2	9849133	9852098
Bf0401			-	-	-	-	-	-		Ciclev10019609m	scaffold_3	37906090	37910975
Cp1254			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Fb2130			-	-	-	-	-	-	SI069,SI117	Ciclev10030030m	scaffold_8	24341129	24344795	C_unshiu_00021:mRNA_68.1	C_unshiu_00021	452003	461315	Hypothetical protein	AGI-08	11.809	KmG-08	11.813
Ov0402			-	-	-	-	-	-		Ciclev10011849m	scaffold_6	9847502	9854667
Tf0200			O	-	-	-	-	-		Ciclev10030297m	scaffold_8	21095569	21102194
Af1013			-	-	-	-	-	-		Ciclev10022053m	scaffold_3	48621909	48624876
Af1286			-	-	-	-	-	-
Af1549			-	-	-	-	-	-		Ciclev10009920m	scaffold_1	2184513	2186967
Al0245			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839
Bf0402			-	-	-	-	-	-		Ciclev10020232m	scaffold_3	9137249	9144663	C_unshiu_00058:mRNA_19.1	C_unshiu_00058	104866	110977	TRNA-specific adenosine deaminase-like protein 3	AGI-05	43.970
Cp1257			-	-	-	-	-	-		Ciclev10014209m	scaffold_2	5582927	5587253
Fb2156	Fb2156.lg		O	-	-	-	-	-		Ciclev10000537m	scaffold_5	39992234	39996269	C_unshiu_00096:mRNA_31.1	C_unshiu_00096	198494	202358	Poly(A) binding protein 6, putative isoform 1	AGI-09	41.254
Lp0104			-	-	-	-	-	-		Ciclev10017466m	scaffold_2	27579627	27581411
Tf0201			O	-	-	-	-	-	SI195	Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1
Af1014			-	-	-	-	-	-		Ciclev10018683m	scaffold_3	43594638	43605172
Af1287			-	-	-	-	-	-		Ciclev10022137m	scaffold_3	39601128	39604586
Af1551			-	-	-	-	-	-		Ciclev10008489m	scaffold_1	6494973	6502196
Al0246			-	-	-	-	-	-		Ciclev10019351m	scaffold_3	44215333	44220917
Bf0403			-	-	-	-	-	-
Fb2159			-	-	-	-	-	-	SI205,SI300	Ciclev10021136m	scaffold_3	39606431	39608387	C_unshiu_00037:mRNA_76.1	C_unshiu_00037	551437	553057	Pirin family protein	AGI-05	49.856	KmG-05S	68.781	JtR-05	41.770			SA-09
Tf0202			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Vs0017			-	-	-	-	-	-		Ciclev10009470m	scaffold_1	6647158	6649599
Af1016			-	-	-	-	-	-		Ciclev10025840m	scaffold_7	2394471	2397293
Af1288			-	-	-	-	-	-		Ciclev10016357m	scaffold_2	35803512	35805985
Af1552			-	-	-	-	-	-		Ciclev10005340m	scaffold_9	30527060	30531535
Bf0404			-	-	-	-	-	-
Cp1268			-	-	-	-	-	-		Ciclev10021861m	scaffold_3	7327436	7329167	C_unshiu_00199:mRNA_13.1	C_unshiu_00199	87134	88461	Light-harvesting complex I protein subunit a4	AGI-05	44.864
Gmom01			-	-	-	-	-	-		Ciclev10000531m	scaffold_5	33273053	33276013
Lp0106			-	-	-	-	-	-		Ciclev10030683m	scaffold_4	22868978	22880751
Ov0405			-	-	-	-	-	-		Ciclev10011509m	scaffold_6	18406856	18412391
Tf0203			-	-	-	-	-	-	SI121	Ciclev10014039m	scaffold_2	10459593	10472483	C_unshiu_00403:mRNA_13.1	C_unshiu_00403	88988	102135	Homeodomain transcriptional regulator
Vs0018			-	-	-	-	-	-		Ciclev10026149m	scaffold_7	4612887	4617115
Af1017			O	-	-	-	-	-		Ciclev10006402m	scaffold_9	22671554	22672639	No					AGI-03	46.274
Af1289			-	-	-	-	-	-		Ciclev10001940m	scaffold_5	4289876	4293681
Af1553			-	-	-	-	-	-		Ciclev10023028m	scaffold_3	45812589	45815067
Al0248			-	-	-	-	-	-		Ciclev10028483m	scaffold_8	19779795	19784134
Bf0405			-	-	-	-	-	-		Ciclev10024721m	scaffold_7	2994525	3001770
Cp1278			-	-	-	-	-	-		Ciclev10030907m	scaffold_4	12263755	12266130
Gmom02			-	-	-	-	-	-		Ciclev10015097m	scaffold_2	4367068	4371625
Lp0107			-	-	-	-	-	-		Ciclev10030913m	scaffold_4	21916592	21922770
Ov0406			-	-	-	-	-	-		Ciclev10025329m	scaffold_7	5159995	5165972
Tf0204			-	-	-	-	-	-		Ciclev10027848m	scaffold_8	23589702	23593390
Af1019			-	-	-	-	-	-		Ciclev10005635m	scaffold_9	192512	196670
Af1290			-	-	-	-	-	-		Ciclev10029472m	scaffold_8	24413157	24415621
Af1554			-	-	-	-	-	-		Ciclev10009386m	scaffold_1	23753759	23756754	C_unshiu_00080:mRNA_59.1	C_unshiu_00080	491826	492778	Protein CWC15	AGI-01	28.775
Al0249			-	-	-	-	-	-		Ciclev10004782m	scaffold_9	30490331	30496586
Bf0406			-	-	-	-	-	-		Ciclev10026290m	scaffold_7	15773091	15776242
Gmom03			-	-	-	-	-	-		Ciclev10019436m	scaffold_3	1864604	1871328	C_unshiu_01325:mRNA_3.1	C_unshiu_01325	7876	14474	Bromo-adjacent-like (BAH) domain protein	AGI-05	7.888
Vt0002			-	-	-	-	-	-		Ciclev10032270m	scaffold_4	20868750	20872170
Af1021			-	-	-	-	-	-		Ciclev10022113m	scaffold_3	40664635	40665640
Af1291			-	-	-	-	-	-		Ciclev10026757m	scaffold_7	4779400	4780310
Af1555			-	-	-	-	-	-		Ciclev10029189m	scaffold_8	24502070	24504031
Al0250			-	-	-	-	-	-		Ciclev10031445m	scaffold_4	24770754	24773948
Bf0407			-	-	-	-	-	-		Ciclev10011592m	scaffold_6	10729034	10731466
Cp1283			-	-	-	-	-	-		Ciclev10001817m	scaffold_5	34891100	34894176
Gmom04			-	-	-	-	-	-		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY	AGI-05	73.504
Tf0206			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Vt0003			-	-	-	-	-	-		Ciclev10027667m	scaffold_8	8153660	8174407	C_unshiu_00616:mRNA_3.1	C_unshiu_00616	10808	18470	Hypothetical protein	AGI-08	56.724
Af1022			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Af1292			-	-	-	-	-	-		Ciclev10026736m	scaffold_7	6677314	6680214
Af1556			-	-	-	-	-	-		Ciclev10026643m	scaffold_7	11107041	11109191	C_unshiu_01501:mRNA_6.1	C_unshiu_01501	57291	59154	Lactoylglutathione lyase/glyoxalase I family protein	AGI-02	11.728
Al0251			-	-	-	-	-	-		Ciclev10021340m	scaffold_3	6695171	6697430
Bf0408			-	-	-	-	-	-		Ciclev10024877m	scaffold_7	4843157	4848614
Cp1292			-	-	-	-	-	-		Ciclev10025390m	scaffold_7	2246732	2249558
Gmom05			-	-	-	-	-	-		Ciclev10024623m	scaffold_3	33722934	33727855
Lp0110			-	-	-	-	-	-		Ciclev10009769m	scaffold_1	24271753	24272644
Ov0409			-	-	-	-	-	-		Ciclev10022219m	scaffold_3	4736047	4740432
Tf0207			-	-	-	-	-	-		Ciclev10014026m	scaffold_2	9008920	9021876
Vt0004			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Af1023			-	-	-	-	-	-		Ciclev10028042m	scaffold_8	2719654	2725331
Af1293			-	-	-	-	-	-		Ciclev10014998m	scaffold_2	16597796	16602257
Af1558			-	-	-	-	-	-		Ciclev10005504m	scaffold_9	29608462	29612474
Al0252			-	-	-	-	-	-		Ciclev10028251m	scaffold_8	24689989	24692884
Bf0409			-	-	-	-	-	-						C_unshiu_00616:mRNA_6.1	C_unshiu_00616	72171	79153	Disease resistance protein (CC-NBS-LRR class) family protein	AGI-08	57.386
Cp1302			-	-	-	-	-	-		Ciclev10031853m	scaffold_4	7407834	7414015
Gmom06			-	-	-	-	-	-		Ciclev10012088m	scaffold_6	2067586	2073007
Lp0111			-	-	-	-	-	-		Ciclev10022339m	scaffold_3	36096009	36099799
Ov0410			-	-	-	-	-	-		Ciclev10001911m	scaffold_5	41005054	41009065
Tf0208			-	-	-	-	-	-	SI181	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein
Vt0005			-	-	-	-	-	-		Ciclev10001888m	scaffold_5	36449346	36452178
Af1024			-	-	-	-	-	-		Ciclev10016735m	scaffold_2	35841859	35844177
Af1294			-	-	-	-	-	-		Ciclev10018252m	scaffold_2	27774863	27778271
Af1559			-	-	-	-	-	-		Ciclev10005333m	scaffold_9	2211862	2215512
Al0256			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Bf0410			-	-	-	-	-	-		Ciclev10003680m	scaffold_5	32917826	32924241
Gmom07			-	-	-	-	-	-		Ciclev10021492m	scaffold_3	7248627	7253007
Ov0411			-	-	-	-	-	-		Ciclev10011259m	scaffold_6	23410636	23414246
Tf0209			-	-	-	-	-	-		Ciclev10015591m	scaffold_2	35642412	35646764
Vt0006			-	-	-	-	-	-		Ciclev10010149m	scaffold_1	24914885	24923422
Af1025			-	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028
Af1295			-	-	-	-	-	-		Ciclev10030829m	scaffold_4	3468083	3477274
Af1560			-	-	-	-	-	-
Al0257	Al0257.k		-	-	-	-	-	-		Ciclev10008444m	scaffold_1	22407412	22409529
Cp1323			-	-	-	-	-	-		Ciclev10012716m	scaffold_6	17992563	17993671
Gmom08			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Lp0113			-	-	-	-	-	-		Ciclev10007510m	scaffold_1	24480591	24484723
Tf0210			-	-	-	-	-	-	SI183	Ciclev10004533m	scaffold_9	11993282	11999324	C_unshiu_00926:mRNA_13.1	C_unshiu_00926	108384	111875	Zinc finger protein NUTCRACKER	AGI-08	56.724
Vt0007			-	-	-	-	-	-		Ciclev10019734m	scaffold_3	49821906	49825730
Af1026			O	-	-	-	-	-		Ciclev10016450m	scaffold_2	24690261	24692734	C_unshiu_00136:mRNA_33.1	C_unshiu_00136	278221	280719	Period circadian protein, putative isoform 1									RP-06.1	24.027
Af1296			-	-	-	-	-	-		Ciclev10031556m	scaffold_4	19133592	19137895
Af1561			-	-	-	-	-	-		Ciclev10009643m	scaffold_1	2420324	2423040
Al0301			-	-	-	-	-	-		Ciclev10022576m	scaffold_3	45906879	45907641
Bf0412			-	-	-	-	-	-						No					AGI-08	29.534
Cp1330			-	-	-	-	-	-		Ciclev10019667m	scaffold_3	14898168	14903449
Gmom09			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Lp0114			-	-	-	-	-	-		Ciclev10008315m	scaffold_1	28623624	28626008
Ov0413			-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like			KmG-07	34.263
Tf0211			-	-	-	-	-	-

Key word search

Target: Genome/map	Scaffold/LG