Citrus CAPS Marker Database

National Agriculture and Food Research Organization
Key word search
  
Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Bf0117 ------TP Ciclev10013983mscaffold_124904223
Af2143 ------TP Ciclev10010213mscaffold_1149283154945
Al0523 ------TP Ciclev10009349mscaffold_1177116180417
Af1752 ------TP Ciclev10009349mscaffold_1177116180417
Af1171 ------TP Ciclev10008298mscaffold_1275263280936
Al0204 ------TP Ciclev10008298mscaffold_1275263280936J C_unshiu_00003:mRNA_150.2C_unshiu_0000311278841133567Myosin heavy chain-like proteinJtR-09S5.527
Cp1938 ------TP Ciclev10009324mscaffold_1329071331103
Af1406 ------TP Ciclev10009324mscaffold_1329071331103
Tf0176 ------TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical proteinRP-01
Tf0177 ------SI133TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical protein
Af3288 ------TP Ciclev10008476mscaffold_1385469388179
Af3188 ------TP Ciclev10007898mscaffold_1448785452457
Af1142 ------TP Ciclev10008681mscaffold_1487184489198
Al0630 AAvailable marker O----OTP Ciclev10008681mscaffold_1487184489198J C_unshiu_00129:mRNA_38.1C_unshiu_00129342865344872Kelch repeat-containing F-box family proteinRP-011.092
Tf0226 AAvailable marker O----OTP Ciclev10008836mscaffold_1526813529150J C_unshiu_00129:mRNA_32.1C_unshiu_00129303106311407Exocyst subunit EXO70 family proteinRP-011.100
Tf0407 ------TP Ciclev10008836mscaffold_1526813529150
Bf0417 ------TP Ciclev10009842mscaffold_1693215695933
Tf0102 ------TP Ciclev10008813mscaffold_1734373736031
Cp0427 ------TP Ciclev10009075mscaffold_1738477743395
Ov0417 ------TP Ciclev10007609mscaffold_1851900857695
Tf0400 ------TP Ciclev10007357mscaffold_1928640936397
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1392 ------TP Ciclev10008930mscaffold_110511551052947
Al0014 O-----SI058,SI153,SI312TP Ciclev10008225mscaffold_110703731072218J C_unshiu_00005:mRNA_43.1C_unshiu_00005281165283012CBL-interacting serine/threonine-protein kinase 20AGI-0197.525RP-013.295
Al0426 ------TP Ciclev10007391mscaffold_111288971137063
Cp1666 ------TP Ciclev10008009mscaffold_111491501151996
Af1157 ------TP Ciclev10009325mscaffold_112345551235706
Af1241 ------TP Ciclev10008227mscaffold_114018421406346
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Af1123 ------TP Ciclev10009597mscaffold_116878941690412
Cp1670 ------TP Ciclev10009435mscaffold_117091311710064
Af1481 ------TP Ciclev10009202mscaffold_117970601800274
Vt0012 ------TP Ciclev10007708mscaffold_118061791809814
Vt0021 ------TP Ciclev10007296mscaffold_120158942023323
Af1311 ------TP Ciclev10009720mscaffold_120256982028188
Tf0341 ------TP Ciclev10009720mscaffold_120256982028188
Af1137 ------TP Ciclev10009474mscaffold_120386812041094
Ov0427 ------TP Ciclev10009427mscaffold_121566792158871J C_unshiu_00553:mRNA_14.1C_unshiu_00553110847134434Hypothetical proteinKmG-05S36.268
Ov0428Ov0427.2 ------TP Ciclev10009427mscaffold_121566792158871
Af1549 ------TP Ciclev10009920mscaffold_121845132186967
Sd0005 ------TP Ciclev10008384mscaffold_123447902346942
Af1561 ------TP Ciclev10009643mscaffold_124203242423040
Af1369 ------TP Ciclev10008015mscaffold_125519202555129
Al0314 ------TP Ciclev10009591mscaffold_125747692577568
Lp0138 ------TP Ciclev10008908mscaffold_125999572603377
Af1213 ------TP Ciclev10010027mscaffold_128219222823925
Af1461 ------TP Ciclev10007728mscaffold_128515212854493
Af1360 ------TP Ciclev10008482mscaffold_130615493065503
Af1274 ------TP Ciclev10009370mscaffold_131525483153983
Af1079 ------TP Ciclev10009570mscaffold_132551403258139
Tf0092 ------SI099TP Ciclev10007435mscaffold_132856013291534J C_unshiu_00006:mRNA_60.1C_unshiu_00006496127502071Class III HD-Zip family protein
Af2042 ------TP Ciclev10008181mscaffold_135214853525524
Af1175 ------TP Ciclev10009729mscaffold_136475393651252
Af1444 ------TP Ciclev10009174mscaffold_136651413672863
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Cp0741 AAvailable marker O---OOTP Ciclev10008230mscaffold_137468643749903J C_unshiu_00055:mRNA_22.1C_unshiu_00055168281172005FerrochelataseAGI-0175.964
Af1476 ------TP Ciclev10009256mscaffold_138629133866838
Af1402b ------TP Ciclev10007310mscaffold_139410933948163
Gmom08 ------TP Ciclev10008617mscaffold_141439484146608
Gmom09 ------TP Ciclev10008617mscaffold_141439484146608
Tf0118 ------TP Ciclev10008617mscaffold_141439484146608
Al0616 ------TP Ciclev10007561mscaffold_143438124351112
Af1413 ------TP Ciclev10009114mscaffold_145220224524821
Cp0699 ------TP Ciclev10009114mscaffold_145220224524821
Af1478 ------TP Ciclev10009725mscaffold_145341614535260
Lp0205 ------TP Ciclev10008932mscaffold_145416764543982
Af1570 ------TP Ciclev10009899mscaffold_146015884603705
Af1107 ------TP Ciclev10009146mscaffold_146069124610637
Bf0011 AAvailable marker O---OOSI218TP Ciclev10008900mscaffold_147228894726339J C_unshiu_00547:mRNA_9.1C_unshiu_005475455657654NADH-cytochrome b5 reductaseAGI-0167.331RP-0123.653
Fb0225 ------TP Ciclev10008570mscaffold_148739704878979J C_unshiu_00039:mRNA_6.1C_unshiu_000395498059746Protein arginine N-methyltransferase 1RP-0533.168
Af1531 ------TP Ciclev10008796mscaffold_149843404987674
Tf0175 ------TP Ciclev10010825mscaffold_150545515056146
Cp0045 ------TP Ciclev10008435mscaffold_151940855198860
Cp1931 ------TP Ciclev10008910mscaffold_153536945358135
Cp0716 ------TP Ciclev10009855mscaffold_154351655436509
Cp1935 ------TP Ciclev10007732mscaffold_155188215522727
Af1081 ------TP Ciclev10010514mscaffold_156502175655629
Mf0033 AAvailable marker ----OOTP Ciclev10010044mscaffold_162276176228389J C_unshiu_00075:mRNA_11.1C_unshiu_00075123779124531Hypothetical proteinAGI-0162.570KmG-0146.353JtR-01S106.811NAT-01S77.905
Mf0050 ------TP Ciclev10010044mscaffold_162276176228389
Tf0263 ------SI013TP Ciclev10008768mscaffold_163580306359568J C_unshiu_00075:mRNA_22.1C_unshiu_00075227733229211Heat shock transcription factor A7a1
Af1551 ------TP Ciclev10008489mscaffold_164949736502196
Mf0074 ------TP Ciclev10008734mscaffold_166179216622625
Bf0022 ------TP Ciclev10008584mscaffold_166283886634237
Vs0017 ------TP Ciclev10009470mscaffold_166471586649599
Tf0233 ------TP Ciclev10008804mscaffold_167722646775904
Af1278 ------TP Ciclev10009508mscaffold_169038046908960
Mf0067 OOthers ------TP Ciclev10008855mscaffold_172645697269002J C_unshiu_00837:mRNA_9.1C_unshiu_008379180796079Protein phosphatase 1 regulatory subunit pprAKmG-03218.460JtR-03113.247
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Bf0025 ------TP Ciclev10008159mscaffold_174027307407596
Al0330 ------TP Ciclev10009377mscaffold_174554927457451
Cp0277 ------TP Ciclev10008086mscaffold_177769707783395
Al0513 OOthers ------TP Ciclev10009222mscaffold_180461818049306J C_unshiu_00191:mRNA_21.1C_unshiu_00191243988246458Stem 28 kDa glycoproteinAGI-0160.031KmG-0141.591
Af1108 ------TP Ciclev10009222mscaffold_180461818049306
Af1181 ------TP Ciclev10009123mscaffold_180635308066056
Cp2210 AAvailable marker -----OTP Ciclev10007886mscaffold_181252798130885J C_unshiu_00744:mRNA_3.1C_unshiu_0074419836253206-phosphofructokinase isoform 1
Af1032 O-----TP Ciclev10009868mscaffold_183774898379348
Af1537 ------TP Ciclev10009797mscaffold_184171588419377
Ov0026Ov0026.k ------TP Ciclev10009797mscaffold_184171588419377
Ov0027Ov0027.em ------TP Ciclev10009797mscaffold_184171588419377J C_unshiu_00584:mRNA_9.1C_unshiu_00584740897626660S ribosomal protein L28AGI-0351.749
Af1300 ------TP Ciclev10008203mscaffold_185396478542949
Af1370 ------TP Ciclev10009015mscaffold_188228348826308J C_unshiu_00579:mRNA_6.1C_unshiu_005794650750108Plasma membraneAGI-0156.590
Wy0008 HDisagree on Clementine haploid genotype O-----TP Ciclev10009193mscaffold_192973609299641NoAGI-0157.863KmG-0143.003JtR-01S99.300
Af1512 ------TP Ciclev10008994mscaffold_193007829304559
Af1078 ------TP Ciclev10007573mscaffold_194288419434694
Bf1192 ------TP Ciclev10008160mscaffold_11067865310684627J C_unshiu_00242:mRNA_11.1C_unshiu_00242100038105603Casein kinase I-like proteinAGI-0157.863
Gn0069 ULess informative for main cultivars O-----SI086,SI375TP Ciclev10008410mscaffold_11094631610949617J C_unshiu_00201:mRNA_19.1C_unshiu_00201212151227232Lycopene epsilon cyclaseAGI-0157.863
Af1065 ------TP Ciclev10009538mscaffold_11100875911012720
Af1120 ------TP Ciclev10008829mscaffold_11123248211237918
Lp0130 ------TP Ciclev10008029mscaffold_11151241511514434
Cp1644 ------TP Ciclev10008029mscaffold_11151241511514434
Cp0475 ------TP Ciclev10008029mscaffold_11151241511514434
Af1285 ------TP Ciclev10010796mscaffold_11280759712808725
Tf0059 ------SI101TP Ciclev10007297mscaffold_11288372212897805J C_unshiu_00450:mRNA_3.1C_unshiu_004503695658462AGC family Serine/Threonine kinase family proteinAGI-0156.416
Tf0414 ------TP Ciclev10007297mscaffold_11288372212897805
Af1459 ------TP Ciclev10009503mscaffold_11297260512977393
Ov0115 ------TP Ciclev10008504mscaffold_11306320113068419
Vt0013 ------TP Ciclev10008981mscaffold_11312328013126173
Al0603 ------TP Ciclev10007714mscaffold_11332581313336158
Af1353 ------TP Ciclev10009740mscaffold_11402655714027565
Fb0478 ------TP Ciclev10008010mscaffold_11459224814596429J C_unshiu_00071:mRNA_18.1C_unshiu_00071196512200666Beta-glucosidase 44AGI-0161.025
Fb0275 O-----TP Ciclev10008562mscaffold_11588311815887517J C_unshiu_00288:mRNA_9.1C_unshiu_002885591060461Malate dehydrogenaseAGI-0155.687
Fb0722 ------TP Ciclev10008390mscaffold_11609803916100795
Af1321 ------TP Ciclev10009751mscaffold_11637116816375666J C_unshiu_00108:mRNA_25.1C_unshiu_00108320409344557Hypothetical proteinAGI-0634.500
Af1197 ------TP Ciclev10009151mscaffold_11646794216471056
Cp1093 ------TP Ciclev10009636mscaffold_11669697916699623
Ov0518 ------TP Ciclev10009133mscaffold_11718503217187893
Af1070 O-----TP Ciclev10008140mscaffold_11730856617311235
Mf0007 ULess informative for main cultivars ------TP Ciclev10008907mscaffold_11747133017472833J C_unshiu_00044:mRNA_52.1C_unshiu_00044424343425685NADPH-dependent codeinone reductase-like protein
Mf0006 ------TP Ciclev10010036mscaffold_11755479017556053
Bf0182 O-----TP Ciclev10009454mscaffold_11783133317834889J C_unshiu_00429:mRNA_12.1C_unshiu_0042990883942963-deoxy-D-manno-octulosonate cytidylyltransferaseAGI-0147.439
Cp1624 AAvailable marker -O-OOOSI307TP Ciclev10008537mscaffold_11806829718070262J C_unshiu_00187:mRNA_17.1C_unshiu_0018799220100762CBS domain-containing protein CBSX5AGI-0158.420KmG-0153.054
Al0334 ------TP Ciclev10008488mscaffold_11811394918117209
Cp0016 ------TP Ciclev10008520mscaffold_11811726418119451
Af1622 ------TP Ciclev10008520mscaffold_11811726418119451J C_unshiu_00187:mRNA_23.3C_unshiu_00187141733143877Protochlorophyllide reductase, chloroplasticAGI-0154.754
Wy0057Wy0057.em ------TP Ciclev10008812mscaffold_11827081818273015
Tf0066 ------SI221TP Ciclev10008812mscaffold_11827081818273015J C_unshiu_00187:mRNA_34.1C_unshiu_00187287391289585NAC domain-containing protein 72AGI-0158.420
Tf0245 ------SI021TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical protein
Al0526Al0526.em ------TP Ciclev10008628mscaffold_11829859918300295
Tf0359 ------TP Ciclev10008628mscaffold_11829859918300295
Al0209 HDisagree on Clementine haploid genotype ------TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical proteinKmG-0137.230JtR-01S88.382
Af1424 ------TP Ciclev10008953mscaffold_11868887318690138J C_unshiu_00137:mRNA_44.1C_unshiu_00137354434355481CFE proteinAGI-0143.613
Af1637 ------TP Ciclev10008007mscaffold_11889616418901623
Tf0327 ------TP Ciclev10009213mscaffold_11905629119058412
Af1234 ------TP Ciclev10007572mscaffold_11997533219979144
Cp0067 O-----TP Ciclev10009235mscaffold_12005692620059223
Lp0230 O-----TP Ciclev10009651mscaffold_12009457520097443
Al0631 ------TP Ciclev10008689mscaffold_12009629720101958
Cp2154 ------SI164TP Ciclev10009584mscaffold_12046286020465557J C_unshiu_00670:mRNA_8.1C_unshiu_00670445024712150S ribosomal protein L24, chloroplastic
Tf0247 ------TP Ciclev10009354mscaffold_12055079220553673
Tf0041 ------TP Ciclev10009354mscaffold_12055079220553673
Tf0058 ------SI257TP Ciclev10009065mscaffold_12088510220889283J C_unshiu_00395:mRNA_8.2C_unshiu_003955097854866Fertilization-independent endosperm proteinAGI-0146.623
Al0522 ------TP Ciclev10008765mscaffold_12108290221086082
Bf0026 ------TP Ciclev10008765mscaffold_12108290221086082J C_unshiu_00487:mRNA_12.1C_unshiu_00487113166115416Thiazole biosynthetic enzymeAGI-0143.164RP-0156.137
If0214 ------TP Ciclev10009906mscaffold_12146473221466099
Af1565 ------TP Ciclev10008210mscaffold_12187502221879839
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Tf0255 ------TP Ciclev10009486mscaffold_12211180822116666
Af1533 ------TP Ciclev10009600mscaffold_12211820322120791
Ov0110 ------TP Ciclev10009770mscaffold_12211820322120791
Al0257Al0257.k ------TP Ciclev10008444mscaffold_12240741222409529
Af1146 ------TP Ciclev10008189mscaffold_12259367122599178
Cp1852 ------TP Ciclev10010530mscaffold_12271166822715696J C_unshiu_00103:mRNA_19.2C_unshiu_00103116559121057Cell differentiation protein rcd1AGI-029.592
Fb0103 OOthers O-----SI155TP Ciclev10008255mscaffold_12275871222761740J C_unshiu_00103:mRNA_27.1C_unshiu_00103160138163082GDP-L-galactose phosphorylaseAGI-0130.703JtR-01S6.418
Al0510 ------TP Ciclev10008176mscaffold_12279292022795069
Af1303 ------TP Ciclev10009361mscaffold_12281092922812161
Af1356 ------TP Ciclev10009976mscaffold_12283750022839817
Bf0036 AAvailable marker OO-OOOTP Ciclev10008751mscaffold_12284094722844111J C_unshiu_00103:mRNA_45.1C_unshiu_00103244231250643GrpE protein homologAGI-0129.144RP-0146.445
Mf0045 ------TP Ciclev10009632mscaffold_12284424122846485
Mf0046 ------TP Ciclev10009632mscaffold_12284424122846485
Cp2158 MDisagree by Marco analysis ------TP Ciclev10007944mscaffold_12284739722852110J C_unshiu_00103:mRNA_47.1C_unshiu_00103254015258614Trigger factor type chaperone family proteinAGI-0124.422
Bf0141 ------TP Ciclev10009364mscaffold_12289347622896534
Bf1207 ------TP Ciclev10010835mscaffold_12291269522913798J C_unshiu_00103:mRNA_59.1C_unshiu_00103319187320041Hypothetical proteinAGI-01
Cp2193 ------TP Ciclev10009415mscaffold_12299942423001838
Bf0013 O-----TP Ciclev10008507mscaffold_12311173323116067NoAGI-01RP-0147.360
Su0002 ------TP Ciclev10007245mscaffold_12323631223242718
Tf0230 ------SI140TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1
Tf0406 Bno homozygous cultivar with minor allele O-----TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1AGI-0128.515
Fb0237 ------TP Ciclev10007227mscaffold_12348720023497316J C_unshiu_00338:mRNA_20.1C_unshiu_00338134033144369Hypothetical proteinAGI-0128.325
Bf0226 MDisagree by Marco analysis O-----TP Ciclev10008869mscaffold_12365478523658857J C_unshiu_00175:mRNA_30.1C_unshiu_00175321759325671SEC14 cytosolic factorAGI-0863.341
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Al0636 AAvailable marker O--OOOSI313TP Ciclev10007493mscaffold_12377679623782088J C_unshiu_00080:mRNA_56.1C_unshiu_00080464290469444WW domain-containing proteinAGI-0127.489KmG-0125.751JtR-01S63.210NAT-01S12.652RP-0148.896
Af1535 ------TP Ciclev10007633mscaffold_12381411523817728
Cp1614 ------TP Ciclev10008763mscaffold_12387679123880665
Af1467 ------TP Ciclev10008651mscaffold_12417163224175378J C_unshiu_00047:mRNA_19.1C_unshiu_00047116658120038Putative amino acid permease 7AGI-0129.784
Lp0110 ------TP Ciclev10009769mscaffold_12427175324272644
Tf0049 ------SI328TP Ciclev10008919mscaffold_12427399324277800J C_unshiu_00047:mRNA_33.1C_unshiu_00047212549221653WD domain protein-likeAGI-0126.841
Tf0274 ------TP Ciclev10008979mscaffold_12435487724358736
Af1004 ------TP Ciclev10008926mscaffold_12442676024434342
Lp0113 ------TP Ciclev10007510mscaffold_12448059124484723
Lp0134 ------TP Ciclev10007510mscaffold_12448059124484723
Lp0204 ------TP Ciclev10008687mscaffold_12452340024526186
Af1571 ------TP Ciclev10010323mscaffold_12453306424536628
Ks9001 ------TP Ciclev10008207mscaffold_12454810924552107J C_unshiu_00047:mRNA_72.1C_unshiu_00047475125488565Inter-alpha-trypsin inhibitor heavy chain-related isoform 1AGI-0127.192JtR-01S61.287
Af1173 ------TP Ciclev10009205mscaffold_12459159824593689
Af1695 ------TP Ciclev10008653mscaffold_12461912624621953
Al0027 ------TP Ciclev10009909mscaffold_12478760024788444
Gn0011 ------TP Ciclev10007488mscaffold_12481453924819264J C_unshiu_00341:mRNA_12.1C_unshiu_003418518289905Sucrose synthaseKmG-0121.459
Tf0168 AAvailable marker OO-OOOSI175TP Ciclev10007563mscaffold_12489876924905716J C_unshiu_00341:mRNA_22.1C_unshiu_00341170777178753AT-rich interactive domain-containing protein 4AGI-0125.752
Vt0006 ------TP Ciclev10010149mscaffold_12491488524923422
Af1624 ------TP Ciclev10007512mscaffold_12492441624934675
Wy0028 AAvailable marker ----OOTP Ciclev10007806mscaffold_12500134125004726J C_unshiu_00150:mRNA_3.1C_unshiu_001501865222079Probable pectinesterase/pectinesterase inhibitor 61AGI-0126.171KmG-01
Af1350 ------TP Ciclev10008817mscaffold_12501774825021583
Af2318 ------TP Ciclev10008753mscaffold_12522797825233897
Af1883 ------TP Ciclev10008999mscaffold_12525575825259340
Fb0143 ------SI361TP Ciclev10007397mscaffold_12528380725291472J C_unshiu_00150:mRNA_43.1C_unshiu_00150325164333089LRR receptor-like serine/threonine-protein kinase ERL1AGI-0126.176RP-0164.368
Af3215 ------TP Ciclev10009264mscaffold_12532207825323384
Af2001 ------TP Ciclev10007327mscaffold_12533768725347002
Gn0042 ------TP Ciclev10009742mscaffold_12537017625371445J C_unshiu_00498:mRNA_21.1C_unshiu_00498140388142383DeficiensJtR-086.490
Tf0307 Bno homozygous cultivar with minor allele O-----TP Ciclev10009286mscaffold_12539568825397278J C_unshiu_00442:mRNA_24.1C_unshiu_00442209015209831Myb domain protein 5AGI-0123.266
Mf0025 ------TP Ciclev10009756mscaffold_12559249425593617
Mf0086 AAvailable marker O---OOSI220,SI315TP Ciclev10009756mscaffold_12559249425593617J C_unshiu_00066:mRNA_75.1C_unshiu_0006650099250183317.9 kDa class II heat shock proteinAGI-0126.428KmG-0119.692JtR-01S57.666RP-0169.936
Gmom12 ------TP Ciclev10009761mscaffold_12560450925605857
Af1084 ------TP Ciclev10008467mscaffold_12571686225720071J C_unshiu_00066:mRNA_57.1C_unshiu_00066369928382143Hypothetical proteinAGI-0124.643
Al0235 ------TP Ciclev10009395mscaffold_12576157025764926
Ov0319 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinKmG-03219.158
Af1094 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinAGI-0130.175
Cp1998 AAvailable marker -----OTP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue protein
Cp1941 ------TP Ciclev10007519mscaffold_12579869025801889
Lp0025 ------TP Ciclev10009567mscaffold_12581694925818472
Lp0211 O-----TP Ciclev10009567mscaffold_12581694925818472J C_unshiu_00066:mRNA_48.1C_unshiu_00066279404280861Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1AGI-0130.175RP-0124.533
Gn0017 ------TP Ciclev10007311mscaffold_12588082425887976J C_unshiu_00005:mRNA_103.1C_unshiu_00005841899847089Sucrose phosphate synthaseAGI-0130.293KmG-0117.862
Af1359 ------TP Ciclev10007524mscaffold_12598780325992258
Lp0237Lp0237.k ------TP Ciclev10007524mscaffold_12598780325992258J C_unshiu_00066:mRNA_23.1C_unshiu_00066112710117006Pyrophosphate-energized vacuolar membrane proton pumpAGI-0129.815KmG-0113.444JtR-01S57.629NAT-01S8.967
Af1364 ------TP Ciclev10007962mscaffold_12602627826032641
Al0228 ------TP Ciclev10009018mscaffold_12620606326208427J C_unshiu_00315:mRNA_25.1C_unshiu_00315212819220361Serine/threonine-protein kinase HT1JtR-0347.115
Af1218 ------TP Ciclev10009894mscaffold_12623740526239791
Al0407 AAvailable marker O---OOTP Ciclev10009315mscaffold_12657605926578193J C_unshiu_00131:mRNA_17.1C_unshiu_0013112115212318360S ribosomal protein L7AGI-0131.240KmG-0115.673JtR-01S57.666RP-0179.425
If0008 AAvailable marker -----OTP Ciclev10009315mscaffold_12657605926578193NoKmG-0115.635JtR-01S57.666
Tf0163 AAvailable marker O---OOTP Ciclev10010423mscaffold_12674082226744016J C_unshiu_00105:mRNA_35.1C_unshiu_00105316978320206RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1AGI-0131.240
Mf0062 ------TP Ciclev10009010mscaffold_12677339626776856
Al0403 ------TP Ciclev10007559mscaffold_12680278726810465
Tf0033 ------TP Ciclev10008659mscaffold_12687207126875269
Tf0033.2 ------TP Ciclev10008659mscaffold_12687207126875269
Cp2073 ------TP Ciclev10008749mscaffold_12687250026875269
Af1269 ------TP Ciclev10009375mscaffold_12704312427045483
Af1223 ------TP Ciclev10009839mscaffold_12711141227114276J C_unshiu_00347:mRNA_8.1C_unshiu_003476655579401Flavin-binding kelch domain F box proteinAGI-0997.668
Tf0193 ------TP Ciclev10007849mscaffold_12716727127171073
Bf0033 ------SI356,SI379TP Ciclev10007537mscaffold_12720499827211059J C_unshiu_00347:mRNA_22.1C_unshiu_00347166830172467NADPH--hemoprotein reductaseAGI-0132.408RP-0185.146
Tf0124 ------TP Ciclev10007717mscaffold_12745735827462893J C_unshiu_00237:mRNA_37.1C_unshiu_00237259818273281Dethiobiotin synthaseAGI-0134.062
Tf0305 ------TP Ciclev10008366mscaffold_12755489727556656
Cp2176 ------TP Ciclev10008323mscaffold_12764063627648110
Cp0632 AAvailable marker O---OOTP Ciclev10007941mscaffold_12769893427703620J C_unshiu_00237:mRNA_7.1C_unshiu_002374093045531Protein translocase subunit SecYAGI-0856.724
Gmom31 ------TP Ciclev10008052mscaffold_12778341927789937
Af1503 ------TP Ciclev10009155mscaffold_12794366327947071
Af1407 ------TP Ciclev10008782mscaffold_12822063728224080
Tf0449 OOthers O-----TP Ciclev10009165mscaffold_12825430728257305J C_unshiu_01997:mRNA_4.1C_unshiu_019973253935330Translation initiation factor IF-3AGI-010.404
Af1372 ------TP Ciclev10009165mscaffold_12825430728257305
Tf0161 ------TP Ciclev10009165mscaffold_12825430728257305
Cp0672 ------TP Ciclev10007769mscaffold_12826220228267878J C_unshiu_00005:mRNA_26.1C_unshiu_00005170218174432Putative eukaryotic translation initiation factor 4 gammaAGI-01101.472
Wy0026 HDisagree on Clementine haploid genotype ------TP Ciclev10010857mscaffold_12832134228323314J C_unshiu_02224:mRNA_5.1C_unshiu_022243017631684Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseAGI-0135.518
Gn0084 DDominant marker ------TP Ciclev10010857mscaffold_12832134228323314
Af3599 ------TP Ciclev10008985mscaffold_12833081028332669
Cp0671 AAvailable marker ----OOTP Ciclev10009489mscaffold_12835394828356507J C_unshiu_00590:mRNA_26.1C_unshiu_00590165626168046UPF0133 proteinAGI-0136.113
Cp2180 ------TP Ciclev10008335mscaffold_12838566028388620
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Lp0227 ------TP Ciclev10009468mscaffold_12842942828433154
Tf0077 O-----SI135TP Ciclev10008135mscaffold_12843397228437921J C_unshiu_00590:mRNA_15.1C_unshiu_005908643090131WRKYAGI-0134.814
Tf0211 ------TP Ciclev10008192mscaffold_12860732528610917
Af1071 ------TP Ciclev10008192mscaffold_12860732528610917
Tf0389 ------TP Ciclev10008192mscaffold_12860732528610917
Lp0114 ------TP Ciclev10008315mscaffold_12862362428626008
Tf0222 ------TP Ciclev10008882mscaffold_12878216928786731
Tf0291 ------TP Ciclev10008882mscaffold_12878216928786731
Cp1067 ------TP Ciclev10014572mscaffold_2188504192741
Tf0264 AAvailable marker O---OOTP Ciclev10015873mscaffold_2248256250675J C_unshiu_00109:mRNA_29.1C_unshiu_00109175776179005GANAGI-06103.728
Ov0429Ov0429.k ------TP Ciclev10015338mscaffold_2290799294122
Wy0049Wy0049.k ------TP Ciclev10015338mscaffold_2290799294122
Ks9005 AAvailable marker O---OOSI342TP Ciclev10015338mscaffold_2290799294122J C_unshiu_00109:mRNA_36.1C_unshiu_00109219070222359TRNA-splicing ligase RtcBAGI-0213.646KmG-0223.647RP-0216.986
Af1429 ------TP Ciclev10016644mscaffold_2390474395075
Af1617 ------TP Ciclev10014836mscaffold_2434537439663
Af1683 ------TP Ciclev10016632mscaffold_2475374478428
Fb0304 ------TP Ciclev10016371mscaffold_2479437484203
Af1692 ------TP Ciclev10014767mscaffold_2691427698055
Mf0070 MDisagree by Marco analysis O-----SI017TP Ciclev10017346mscaffold_230673373069249J C_unshiu_00246:mRNA_8.1C_unshiu_002466825169988Hypothetical proteinAGI-0736.616JtR-0752.611RP-0719.079
Bf0225 ------TP Ciclev10016071mscaffold_234603703462174
If0202 ------TP Ciclev10016037mscaffold_237773973781539
Ov0425 Bno homozygous cultivar with minor allele ------SI051,SI291,SI351,SI371TP Ciclev10015385mscaffold_240211674024377J C_unshiu_00992:mRNA_13.1C_unshiu_009927900882132DnaJAGI-0741.317RP-0725.534
Ov0426Ov0425.2 ------TP Ciclev10015385mscaffold_240211674024377
Lp0007 ------TP Ciclev10015385mscaffold_240211674024377
Cp1044 Bno homozygous cultivar with minor allele ------TP Ciclev10015927mscaffold_243542784358516J C_unshiu_00062:mRNA_38.1C_unshiu_00062326045332995Iron-sulfur cluster formation ABC transporter ATP-binding subunitAGI-0739.420
Gmom02 ------TP Ciclev10015097mscaffold_243670684371625
Al0646 ------TP Ciclev10015589mscaffold_244611514463605
Af1161 ------TP Ciclev10017060mscaffold_244955964498439
Af1668 ------TP Ciclev10016828mscaffold_246604244661352
Ov0307 OOthers ------TP Ciclev10015790mscaffold_249370474940138
Cp0592 ------TP Ciclev10015082mscaffold_251678535171721
Lp0132 ------TP Ciclev10014204mscaffold_254690505475142
Ov0120 ------TP Ciclev10014574mscaffold_255335915538729
Cp1257 ------TP Ciclev10014209mscaffold_255829275587253
Tf0191 ------TP Ciclev10015847mscaffold_258214015825173
Af1436 ------TP Ciclev10014858mscaffold_259753675977280
Bf0147 ------SI165TP Ciclev10014858mscaffold_259753675977280J C_unshiu_00260:mRNA_18.1C_unshiu_00260124629126502Flavonoid 3'-monooxygenaseRP-06.147.841
If0001 ------TP Ciclev10015414mscaffold_263194466320851
Af1636 ------TP Ciclev10016216mscaffold_266118136619116J C_unshiu_00072:mRNA_53.1C_unshiu_00072416072423443Zinc transporter ZTP29AGI-06150.228
Bf0161 ------SI089,SI348TP Ciclev10015189mscaffold_266580036660691J C_unshiu_00072:mRNA_47.1C_unshiu_00072364436365812Sequence-specific DNA binding transcription factorsAGI-06144.849
Cp1851 ------TP Ciclev10014769mscaffold_268407436844063
Af1450 ------TP Ciclev10014769mscaffold_268407436844063
Af1698 ------TP Ciclev10016574mscaffold_268801116883726
Tf0018.2 ------TP Ciclev10015806mscaffold_269009926905827
Tf0052 ------TP Ciclev10015808mscaffold_269013506905827
Cp1779 ------TP Ciclev10014382mscaffold_269270816932080
Af1699 ------TP Ciclev10014381mscaffold_269270816932080
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Cp0046 ------TP Ciclev10014361mscaffold_274293107438670
Bf0116 ------SI260TP Ciclev10015490mscaffold_276627537667440J C_unshiu_00729:mRNA_11.1C_unshiu_007298141586474Aminotransferase 2AGI-06133.800RP-06.128.601
Bf0414 ------TP Ciclev10014446mscaffold_277195507723396
Af1418 ------TP Ciclev10017186mscaffold_280608508062464
Ks9004 ------TP Ciclev10016351mscaffold_284066458407971
Tf0063 ------TP Ciclev10014617mscaffold_284187898421898
Ks9003 AAvailable marker -----OTP Ciclev10014733mscaffold_284361108440408J C_unshiu_00494:mRNA_1.1C_unshiu_00494701411146Ascorbate oxidaseKmG-0919.560JtR-09S5.836
Cp1945 ------TP Ciclev10014186mscaffold_284582098466681
Al0238 ------TP Ciclev10017077mscaffold_284943698496454
Vt0035 ------TP Ciclev10016383mscaffold_285107128514409
Cp0701 ------TP Ciclev10015579mscaffold_285394108545538
Vt0023 ------TP Ciclev10016079mscaffold_287122368714558
Af1129 ------TP Ciclev10014531mscaffold_287273468730038
Tf0207 ------TP Ciclev10014026mscaffold_290089209021876
Tf0385 ------TP Ciclev10014026mscaffold_290089209021876
Af1660 ------TP Ciclev10015583mscaffold_291648049166682
Bf0212 ------SI332TP Ciclev10016442mscaffold_292066869211152J C_unshiu_00004:mRNA_52.2C_unshiu_00004401860406444Carbonate dehydrataseAGI-06117.593
Cp0962 ------TP Ciclev10016442mscaffold_292066869211152
Tf0455 OOthers O-----TP Ciclev10017004mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical proteinAGI-06114.172
Tf0042.2 AAvailable marker O----OTP Ciclev10016820mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical protein
Af1590 ------TP Ciclev10017502mscaffold_293482929351074
Cp1880 AAvailable marker -----OTP Ciclev10016235mscaffold_293516309354621J C_unshiu_00067:mRNA_9.1C_unshiu_000677125274672Peptide deformylase
Af1507a ------TP Ciclev10017265mscaffold_294545179456360
Gn0085 ------TP Ciclev10014816mscaffold_294571929463218
Cp0458 ------TP Ciclev10014634mscaffold_297445749752276
Al0244 ------TP Ciclev10015497mscaffold_298491339852098
Cp0077 O-----TP Ciclev10015497mscaffold_298491339852098J C_unshiu_00049:mRNA_29.1C_unshiu_00049210181212829Altered inheritance of mitochondria protein 32AGI-0854.867
Lp0124 ------TP Ciclev10015245mscaffold_21008752310092758
Af1539 ------TP Ciclev10016688mscaffold_21009730810100347
Af1542 ------TP Ciclev10015820mscaffold_21042477910427904
Af1033 O-----TP Ciclev10016063mscaffold_21045689910459385
Su0003 ------TP Ciclev10016063mscaffold_21045689910459385
Tf0203 ------SI121TP Ciclev10014039mscaffold_21045959310472483J C_unshiu_00403:mRNA_13.1C_unshiu_0040388988102135Homeodomain transcriptional regulator
Tf0381 ------TP Ciclev10014039mscaffold_21045959310472483
Lp0136 ------TP Ciclev10014127mscaffold_21050087910504450
Af1095 ------TP Ciclev10014502mscaffold_21069542410700095
Af1363 ------TP Ciclev10015634mscaffold_21093151510935724
Ov0422 AAvailable marker -----OTP Ciclev10016314mscaffold_21107158711074479J C_unshiu_00184:mRNA_33.1C_unshiu_0018429595329873614-3-3-like protein GF14 muRP-06.128.576
Cp0747 ------TP Ciclev10015418mscaffold_21108496011088767J C_unshiu_00184:mRNA_32.1C_unshiu_00184282295285277ATP synthase protein IAGI-0985.816
Fb0124 ------SI167,SI212TP Ciclev10014164mscaffold_21108880811095416J C_unshiu_00184:mRNA_31.1C_unshiu_00184275231281575Phosphoenolpyruvate carboxylase
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Cp0900 ------TP Ciclev10017707mscaffold_21138191711385787
Af1103 ------TP Ciclev10018380mscaffold_21139330311394035
Cp0028 O-----TP Ciclev10014471mscaffold_21141833111422116
Cp1885 AAvailable marker -----OTP Ciclev10014471mscaffold_21141833111422116J C_unshiu_01218:mRNA_4.1C_unshiu_012181408422447ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Af1404 ------TP Ciclev10014471mscaffold_21141833111422116
Cp0745 ------TP Ciclev10014471mscaffold_21141833111422116
Em0004Fb1532.em ------TP Ciclev10015815mscaffold_21158569911587422J C_unshiu_01211:mRNA_9.1C_unshiu_012116775669149Transparent testa glabra 1AGI-0211.835
Cp1213 ------TP Ciclev10015476mscaffold_21159899911601307
Cp0080 O-----TP Ciclev10015476mscaffold_21159899911601307
Al0028 ------TP Ciclev10016123mscaffold_21160495611606340J C_unshiu_00957:mRNA_11.1C_unshiu_009573850839910Xyloglucan endotransglucosylase/hydrolase protein ARP-06.128.573
Ov0418 ------TP Ciclev10015900mscaffold_21186390611865549
Ov0021 ------TP Ciclev10015535mscaffold_21186390611865549
Fb1916 ------SI336TP Ciclev10016275mscaffold_21204396912046230J C_unshiu_00026:mRNA_12.1C_unshiu_00026110679112686Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4RP-06.124.027
Cp1216 AAvailable marker ----OOTP Ciclev10017113mscaffold_21211279012113903J C_unshiu_00026:mRNA_6.1C_unshiu_000264665847677CCR proteinAGI-0676.905
Bf0001 ------TP Ciclev10016890mscaffold_21228139512282562
Af1074 ------TP Ciclev10015644mscaffold_21230876112314225
Af1546 ------TP Ciclev10016821mscaffold_21240607812408794
Af1318 ------TP Ciclev10016868mscaffold_21254954312550712
If0216 OOthers O-----SI174TP Ciclev10015257mscaffold_21287695212881843J C_unshiu_01838:mRNA_2.1C_unshiu_018382359431186Hypothetical proteinAGI-0974.076KmG-0126.420JtR-01S66.382RP-0929.224
Af1602 ------TP Ciclev10017370mscaffold_21335008213351899
Cp2043 ------TP Ciclev10016825mscaffold_21344181313443080
Af1229 ------TP Ciclev10016825mscaffold_21344181313443080
Af1597 ------TP Ciclev10016480mscaffold_21348200513485923
Bf0159 ------SI074TP Ciclev10016059mscaffold_21350226813505597J C_unshiu_01990:mRNA_1.1C_unshiu_019901047113748DCD (Development and cell death) domain proteinRP-06.123.326
Cp1221 ------TP Ciclev10016867mscaffold_21362765613629444
Fb0301 AAvailable marker ----OOSI053TP Ciclev10014804mscaffold_21414353714146003J C_unshiu_00466:mRNA_1.1C_unshiu_0046613811161784-coumarate:coenzyme A ligase 4AGI-0692.727KmG-06RP-06.116.627
Cp1875 ------TP Ciclev10014955mscaffold_21414839214153974
Af1310 ------TP Ciclev10016380mscaffold_21448140214484929
Af1677 ------TP Ciclev10015358mscaffold_21548543715488234
Ov0525 ULess informative for main cultivars O-----TP Ciclev10015260mscaffold_21583314215836770J C_unshiu_01875:mRNA_4.1C_unshiu_018753598339196ADP/ATP translocase 1AGI-0691.522SA-0627.092
Al0519 DDominant marker O-----TP Ciclev10015260mscaffold_21583314215836770NoRP-06.1
Ov0003 ------TP Ciclev10015260mscaffold_21583314215836770
Af1293 ------TP Ciclev10014998mscaffold_21659779616602257
Cp0015 ------TP Ciclev10016927mscaffold_21739038917391229
Tf0378 ------TP Ciclev10014909mscaffold_21902838919031661
Cp2151 ------TP Ciclev10016218mscaffold_21991857419923588
Af1153 ------TP Ciclev10015940mscaffold_22012417020127095
Af1682 ------TP Ciclev10016706mscaffold_22015346020156597
Af1671 ------TP Ciclev10016129mscaffold_22105708021059316
Bf0207 ------TP Ciclev10014190mscaffold_22200578322011411
Cp0021 O-----TP Ciclev10015229mscaffold_22230529722307562
Lp0028 ------TP Ciclev10014842mscaffold_22236254822366644
Lp0141 ------TP Ciclev10016648mscaffold_22238672722388706
Cp1617 ------TP Ciclev10015460mscaffold_22243668522438478
Vt0018 ------TP Ciclev10016206mscaffold_22247120822474774
Bf0122 ------TP Ciclev10016206mscaffold_22247120822474774
Al0615 ------TP Ciclev10014304mscaffold_22260737522611126
Fb1121Fb1121.lg ------TP Ciclev10014991mscaffold_22263576422640239
Fb0296 ------TP Ciclev10014378mscaffold_22268912422695586J C_unshiu_01495:mRNA_8.1C_unshiu_014956033662557Hypothetical proteinRP-06.110.382
Af1567 ------TP Ciclev10016663mscaffold_22275934122763218
Af1111 ------TP Ciclev10015086mscaffold_22302119323023457J C_unshiu_00172:mRNA_31.1C_unshiu_00172270783273047Glucan endo-1,3-beta-glucosidase 13AGI-0683.445
Af1411 ------TP Ciclev10016646mscaffold_22307319123078049
Af1681 ------TP Ciclev10015215mscaffold_22316367323168238
Tf0101 ------TP Ciclev10015215mscaffold_22316367323168238
Af1502 ------TP Ciclev10015770mscaffold_22324392623246266
Vt0033 ------TP Ciclev10016829mscaffold_22369588123697100
Al0427Al0247.em ------TP Ciclev10016829mscaffold_22369588123697100
Tf0114 ------TP Ciclev10015049mscaffold_22382632323829613
Fb1170 ------TP Ciclev10014845mscaffold_22382986223832918
Af1097 ------TP Ciclev10014845mscaffold_22382986223832918
Cp2092 ------TP Ciclev10014794mscaffold_22385901623862998
Cp1224 ------TP Ciclev10016280mscaffold_22389181423893095
Ov0403 AAvailable marker O---OOSI136,SI298,SI325TP Ciclev10016280mscaffold_22389181423893095J C_unshiu_00081:mRNA_50.1C_unshiu_00081296655297936Chlorophyll a/b binding proteinAGI-0661.779KmG-0612.610JtR-06S
Gn0083 ------TP Ciclev10016280mscaffold_22389181423893095
Cp0589 ------TP Ciclev10016280mscaffold_22389181423893095
Cp1501 ------TP Ciclev10017197mscaffold_22433680924337802
Cp0591 ------TP Ciclev10017197mscaffold_22433680924337802
Af1609 ------TP Ciclev10014451mscaffold_22453304424538470
Af1145 ------TP Ciclev10018013mscaffold_22456585724567752
Lp0229 O-----TP Ciclev10015636mscaffold_22463705324639946J C_unshiu_00136:mRNA_24.1C_unshiu_00136221432223640ARM repeat superfamily proteinRP-06.125.198
Tf0134 ------TP Ciclev10015364mscaffold_22466710224672331
Af1026 O-----TP Ciclev10016450mscaffold_22469026124692734J C_unshiu_00136:mRNA_33.1C_unshiu_00136278221280719Period circadian protein, putative isoform 1RP-06.124.027
Cp0026 ------TP Ciclev10014741mscaffold_22493868624943643J C_unshiu_00472:mRNA_8.1C_unshiu_004728527889618Putative ADP-glucose pyrophosphorylase small subunitAGI-0672.449
Fb0389 ------TP Ciclev10014121mscaffold_22517966825188103J C_unshiu_00087:mRNA_31.1C_unshiu_00087209767218135Putative pesticidal crystal cry8Ba-likeAGI-0856.850
Cp1011 ------TP Ciclev10016354mscaffold_22534643925350875J C_unshiu_00087:mRNA_55.1C_unshiu_00087398683402763ZZ-type zinc finger-containing 3AGI-09115.692
Bf0167 ------TP Ciclev10014944mscaffold_22601158626016025
Tf0173 O-----TP Ciclev10015413mscaffold_22609734326099320J C_unshiu_00259:mRNA_35.1C_unshiu_00259219790227265Hypothetical proteinRP-06.128.110
Af1564 ------TP Ciclev10015917mscaffold_22620663526210648
Al0635 AAvailable marker ----OOTP Ciclev10015354mscaffold_22643554026438838J C_unshiu_00197:mRNA_27.1C_unshiu_00197251131253300GAGA-binding transcriptional activatorAGI-0669.195KmG-0615.268JtR-06S1.903NAT-06S7.869
Al0635.2Al0635.k ------TP Ciclev10015354mscaffold_22643554026438838
Af1441 ------TP Ciclev10015354mscaffold_22643554026438838
Af1056 ------TP Ciclev10015905mscaffold_22659597226598955J C_unshiu_00262:mRNA_14.1C_unshiu_002628457387520Purple acid phosphatase 3AGI-0666.320
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Af1616 ------TP Ciclev10014317mscaffold_22681759326820324
Af1236 ------TP Ciclev10015450mscaffold_22685238126857537
Tf0366 ------TP Ciclev10015541mscaffold_22689033526894409
Fb1611 ------SI071TP Ciclev10014570mscaffold_22703018827034752No
Cp0431 AAvailable marker O---OOTP Ciclev10015731mscaffold_22708417727089027J C_unshiu_00017:mRNA_35.1C_unshiu_00017248152252850E3 ubiquitin protein ligase RIE1AGI-0660.660
Al0602 AAvailable marker -----OTP Ciclev10017248mscaffold_22714114827141869J C_unshiu_00017:mRNA_42.1C_unshiu_00017304994305523Hypothetical proteinKmG-0618.450JtR-06S3.805
Lp0203 ------TP Ciclev10015577mscaffold_22716728927171203
Mf0064 ------TP Ciclev10015846mscaffold_22734458727346090
Al0023 ------TP Ciclev10014721mscaffold_22747990727486732
Af1335 ------TP Ciclev10016822mscaffold_22754966027551146
Cp0459 ------TP Ciclev10016822mscaffold_22754966027551146J C_unshiu_00017:mRNA_86.1C_unshiu_00017707192708314NADH dehydrogenase-like complex LAGI-0674.140
Lp0104 ------TP Ciclev10017466mscaffold_22757962727581411
Wy0053Wy0053.k ------TP Ciclev10017466mscaffold_22757962727581411
Af1299 ------TP Ciclev10017055mscaffold_22763816327639131
Af1593 ------TP Ciclev10015971mscaffold_22773839727741912J C_unshiu_00745:mRNA_8.1C_unshiu_007458226585742Prolactin regulatory element-binding protein, putativeAGI-0661.501
Af1294 ------TP Ciclev10018252mscaffold_22777486327778271
Mf0096 OOthers ------SI249,SI333TP Ciclev10018252mscaffold_22777486327778271J C_unshiu_00745:mRNA_6.1C_unshiu_007454815062370Hypothetical proteinAGI-0660.007KmG-0622.141JtR-06S5.708NAT-06S10.082
Af1244b ------TP Ciclev10016184mscaffold_22777924727785501
Wy0037 ------TP Ciclev10016309mscaffold_22804659228048907
Cp0564 ------TP Ciclev10015744mscaffold_22818935028194237
Cp0566 ------TP Ciclev10014450mscaffold_22873294128736344
Af1689 ------TP Ciclev10015519mscaffold_22876164928766750
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Af1306 ------TP Ciclev10014843mscaffold_22896866828973736
Bf0200 OOthers ------SI335TP Ciclev10014367mscaffold_22902243329030724J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Af1312 ------TP Ciclev10014367mscaffold_22902243329030537J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1AGI-0637.883
Tf0035 ------TP Ciclev10016461mscaffold_22904775829049298
Wy0058Wy0058.em ------TP Ciclev10016274mscaffold_22914050929143804J C_unshiu_00022:mRNA_58.1C_unshiu_00022424974428249Plastid ribosomal protein L15
Ov0119 ------TP Ciclev10016788mscaffold_22917277229175757
Tf0343 AtAvailable marker O---OOTP Ciclev10016587mscaffold_22920468029206501J C_unshiu_00022:mRNA_67.1C_unshiu_00022489282490950High mobility group B protein 7AGI-0644.393
Af1053 O-----TP Ciclev10014664mscaffold_22920681829208977
Af1491a ------TP Ciclev10017207mscaffold_22925805229260162
Af1174 ------TP Ciclev10014963mscaffold_22931417629319032
Bf0201 ------TP Ciclev10015180mscaffold_22937056029376244
Cp0758 ------TP Ciclev10015073mscaffold_22945263929459747
Af1494 ------TP Ciclev10017510mscaffold_22964450729646280
Cp0214 OOthers ------TP Ciclev10016075mscaffold_22973224929735969J C_unshiu_00073:mRNA_25.1C_unshiu_00073178507182191MOSC domain-containing protein 2, mitochondrialAGI-0646.660
Af1283 ------TP Ciclev10016366mscaffold_22975772329762309
Cp1629 ------TP Ciclev10016703mscaffold_22978314829785224
Af1446 ------TP Ciclev10016974mscaffold_23043579030437278
If0009 ------TP Ciclev10017109mscaffold_23059933530602528
Bf0160 ------TP Ciclev10016613mscaffold_23059933530602528
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Cp0221 ULess informative for main cultivars ------TP Ciclev10016539mscaffold_23064853130649856J C_unshiu_00125:mRNA_61.1C_unshiu_00125360098361069Photosystem I reaction center subunit III
Bf0124 ------TP Ciclev10014143mscaffold_23066012430670009
Tf0374 ------TP Ciclev10016964mscaffold_23088646930892663
Tf0409 ------TP Ciclev10016959mscaffold_23088646930892663
Lp0033 ------TP Ciclev10016127mscaffold_23092339830926574
Ov0412 OOthers ----OOSI050,SI222TP Ciclev10015053mscaffold_23103608831038222J C_unshiu_00143:mRNA_11.1C_unshiu_001436747569537SEC14 cytosolic factor family proteinAGI-0642.110KmG-0639.373JtR-06S15.372
Cp1567 ------TP Ciclev10014857mscaffold_23114884931150616
Wy0035 ULess informative for main cultivars O-----TP Ciclev10014857mscaffold_23114884931150616J C_unshiu_00292:mRNA_13.1C_unshiu_00292110620112650FAD-binding Berberine family proteinAGI-0636.863
Af1313 ------TP Ciclev10014748mscaffold_23122229931225439
Tf0253 ------TP Ciclev10016685mscaffold_23142045731425299
Tf0432 AAvailable marker O---OOTP Ciclev10016685mscaffold_23142045731425299J C_unshiu_00091:mRNA_39.1C_unshiu_00091370141375026Nuclear transcription factor Y subunit A-7AGI-0638.958
Tf0218 ------TP Ciclev10014499mscaffold_23148981131497594
Tf0395 ------TP Ciclev10014499mscaffold_23148981131497594
Af1010 ------TP Ciclev10014106mscaffold_23165651031666206
Tf0452 ------TP Ciclev10014198mscaffold_23174043131747095
Tf0185 O-----TP Ciclev10014198mscaffold_23174043131747095
Wy0056Wy0056.em AAvailable marker ----OOTP Ciclev10014198mscaffold_23174043131747095J C_unshiu_00027:mRNA_81.1C_unshiu_00027521555527308Auxin response factorAGI-0636.788
Cp0207 ------TP Ciclev10015296mscaffold_23185169831857541
Em0001 ------TP Ciclev10016968mscaffold_23192734231929229J C_unshiu_00027:mRNA_54.1C_unshiu_0002734506734672750S ribosomal protein L14, chloroplasticAGI-0635.643
Al0005 ------TP Ciclev10016064mscaffold_23203236532035492
Af1693 ------TP Ciclev10016657mscaffold_23206914932072079J C_unshiu_00027:mRNA_31.2C_unshiu_00027205885208484DERLIN-2.2 isoform 1AGI-0635.794
Cp0381 ------TP Ciclev10015511mscaffold_23215529532158290
Af1104 ------TP Ciclev10015941mscaffold_23215529832158290
Lp0140 MDisagree by Marco analysis O-----TP Ciclev10016399mscaffold_23262990832634194J C_unshiu_00070:mRNA_52.1C_unshiu_00070393864397918Universal stress protein A-like proteinKmG-0212.229JtR-022.765RP-028.172
Al0647 MDisagree by Marco analysis O-----TP Ciclev10016069mscaffold_23264074332643349J C_unshiu_00070:mRNA_53.1C_unshiu_00070403765406305Nitric oxide synthase-interacting protein homologAGI-06KmG-0646.877
Gn0045 ------TP Ciclev10016917mscaffold_23272060932721917
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Al0201 ULess informative for main cultivars ------TP Ciclev10014752mscaffold_23278083032782885J C_unshiu_00153:mRNA_49.1C_unshiu_00153346248348256Armadillo/beta-catenin-like repeat family protein, expressed
Al0236 ------TP Ciclev10014723mscaffold_23280656532812384
Af1445 ------TP Ciclev10016776mscaffold_23288045632882923
Lp0221 ------TP Ciclev10015663mscaffold_23296036232966170
Af1127 ------TP Ciclev10016337mscaffold_23299856033003916
Tf0004 ------SI219,SI330TP Ciclev10014045mscaffold_23307482133084014J C_unshiu_00153:mRNA_7.1C_unshiu_001536640675053Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2AGI-0632.312
Cp1572 ------TP Ciclev10014734mscaffold_23319888033205481
Vs0005 OOthers O-----SI022,SI075TP Ciclev10016009mscaffold_23321683933219042J C_unshiu_00002:mRNA_211.1C_unshiu_0000215118091513915Epoxide hydrolase 2AGI-0631.521KmG-0259.329JtR-06S50.000NAT-06S50.000
Cp0042 O-----TP Ciclev10018175mscaffold_23340922233411202
Af1477 ------TP Ciclev10016057mscaffold_23356148733563802
Cp0784 ------TP Ciclev10016057mscaffold_23356148733563802
Tf0273 ------TP Ciclev10015710mscaffold_23359364233595988
Al0641 ------TP Ciclev10017193mscaffold_23362449233626591
Af1249 ------TP Ciclev10017171mscaffold_23366001133663665
Al0633 OOthers O----OSI123TP Ciclev10015092mscaffold_23383740333842156J C_unshiu_00002:mRNA_126.1C_unshiu_00002901824911260Vascular plant one zinc finger protein isoform 1KmG-0655.857JtR-06S59.645NAT-06S51.106RP-06.227.837
Mf0083 Bno homozygous cultivar with minor allele ------TP Ciclev10015092mscaffold_23383740333842156NoAGI-0639.963
Cp0537 AAvailable marker O---OOTP Ciclev10016779mscaffold_23418921634193815J C_unshiu_00002:mRNA_71.2C_unshiu_00002543564547918Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10AGI-0625.930
Tf0095 O-----TP Ciclev10016229mscaffold_23441215234415059
Af1320 ------TP Ciclev10018023mscaffold_23460247934604518
Af1631 ------TP Ciclev10015794mscaffold_23460919634614203
Tf0344 AAvailable marker O---OOTP Ciclev10016433mscaffold_23462423634631123J C_unshiu_00002:mRNA_17.1C_unshiu_00002124392131264Floral homeotic protein AGAMOUSAGI-0624.216
Af1380 ------TP Ciclev10017148mscaffold_23476429434766390
Al0414 ------TP Ciclev10014243mscaffold_23477523234780330
Af1440 ------TP Ciclev10014238mscaffold_23481707534823291
Lp0121 ------TP Ciclev10017090mscaffold_23482930034831997
Lp0020 ------TP Ciclev10017167mscaffold_23484195234844319
Af1351 ------TP Ciclev10016286mscaffold_23491821734919258
Cp2079 ------TP Ciclev10015139mscaffold_23499344234996954
Af1580 ------TP Ciclev10016368mscaffold_23501384835015439J C_unshiu_00048:mRNA_76.1C_unshiu_00048512885514767NAD(P)-binding Rossmann-fold superfamily protein isoform 2AGI-0620.932
Ov0325 ------TP Ciclev10016692mscaffold_23518059435182774J C_unshiu_00048:mRNA_54.1C_unshiu_00048359734361893SGS domain-containing proteinNAT-08248.374
Mf0048 ------TP Ciclev10014833mscaffold_23520497035210387
Al0417 MDisagree by Marco analysis O-----SI244,SI255TP Ciclev10015483mscaffold_23521269135214865J C_unshiu_00048:mRNA_50.1C_unshiu_00048328418330513Kelch repeat-containing F-box family proteinAGI-0620.297KmG-0662.256NAT-06S56.647
Bf0110 ------SI297TP Ciclev10014639mscaffold_23523551735237892J C_unshiu_00048:mRNA_48.1C_unshiu_000483064123086209-cis-epoxycarotenoid dioxygenase 1
Al0504 ------TP Ciclev10015664mscaffold_23527368835277908
Af1378 ------TP Ciclev10016040mscaffold_23527368835277907
Lp0043 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Ov0128 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Cp0101 ------TP Ciclev10015680mscaffold_23534906335350706
Bf0028 DDominant marker O--O--SI001TP Ciclev10014319mscaffold_23535477635363026J C_unshiu_00048:mRNA_32.1C_unshiu_00048179733188796Soluble starch synthase III-1AGI-0617.966
Cp0384 AAvailable marker O---OOTP Ciclev10015162mscaffold_23542259835425980J C_unshiu_00048:mRNA_23.2C_unshiu_00048111764114820APS reductaseAGI-0619.002
Cp0070 O-----TP Ciclev10014440mscaffold_23542910335435228
Af1340 ------TP Ciclev10015433mscaffold_23547007835472862
If0003 Bno homozygous cultivar with minor allele ------SI130TP Ciclev10015433mscaffold_23547007835472862J C_unshiu_00048:mRNA_13.1C_unshiu_000486465267377AminomethyltransferaseAGI-0618.136JtR-06S67.371
Tf0060 ------TP Ciclev10014642mscaffold_23551379635516719
If0002 MDisagree by Marco analysis ------TP Ciclev10016861mscaffold_23554669235549207J C_unshiu_01497:mRNA_3.1C_unshiu_014971021514601YggS family pyridoxal phosphate enzymeAGI-0619.002KmG-0662.901
Tf0119 AAvailable marker ----OOTP Ciclev10014416mscaffold_23556423835570619J C_unshiu_01497:mRNA_5.1C_unshiu_014972029733375Hypothetical proteinAGI-0619.002
Vt0001 AAvailable marker ----OOTP Ciclev10014290mscaffold_23562493535628855J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0616.327KmG-0668.041
Tf0209 ------TP Ciclev10015591mscaffold_23564241235646764
Tf0387 ------TP Ciclev10015591mscaffold_23564241235646764
Af1395 ------TP Ciclev10016067mscaffold_23565684535659383
Cp0071 ------TP Ciclev10014760mscaffold_23568153835687125
Fb1685 ------TP Ciclev10015934mscaffold_23569324935696515
Gn0005 MDisagree by Marco analysis ------TP Ciclev10015934mscaffold_23569324935696515J C_unshiu_00337:mRNA_13.1C_unshiu_003376888371725FibrillinAGI-0616.857KmG-0663.840NAT-06S59.976
Gn0005.2 ------TP Ciclev10015934mscaffold_23569324935696515
Af1642 ------TP Ciclev10015934mscaffold_23569324935696515
Cp1577 ------TP Ciclev10015546mscaffold_23573248635736448
Fb0104 OOthers O-----TP Ciclev10016358mscaffold_23575854635760859J C_unshiu_00337:mRNA_24.1C_unshiu_00337135198136991Tropinone reductase likeAGI-0616.857RP-06.216.271
Af1288 ------TP Ciclev10016357mscaffold_23580351235805985
Af1009 ------TP Ciclev10015365mscaffold_23581832735822366
Af1155 ------TP Ciclev10016372mscaffold_23583683035839763
Af1024 ------TP Ciclev10016735mscaffold_23584185935844177
Gn0073 AAvailable marker OO--OOTP Ciclev10014770mscaffold_23589566235898841J C_unshiu_00077:mRNA_4.1C_unshiu_000773041032987Tonoplast dicarboxylate transporterAGI-0612.402
Al0508 ------TP Ciclev10017102mscaffold_23592018635922196
Af1222 ------TP Ciclev10018015mscaffold_23593458935935920
Bf0193 O-----SI100,SI109TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1RP-06.214.065
Tf0330 ------SI064,SI139TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1AGI-0613.470
Af1176 ------TP Ciclev10017100mscaffold_23598034135983262
Af1489 ------TP Ciclev10016302mscaffold_23607850136081245
Al0607 ------TP Ciclev10016035mscaffold_23616329036165355
Tf0225 ------TP Ciclev10015893mscaffold_23621196136216858
Tf0402 ------TP Ciclev10015893mscaffold_23621196136216858J C_unshiu_00077:mRNA_57.1C_unshiu_00077335424340163MYB-CC type transfactorAGI-069.560
Tf0086 ------TP Ciclev10018915mscaffold_36215767039
Tf0277 OOthers O-----TP Ciclev10019282mscaffold_3181596185335
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
If0218 ------TP Ciclev10022441mscaffold_3449407451690
Al0320 ------TP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Al0320.2Al0320.em AAvailable marker -----OTP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Cp1487 ------TP Ciclev10020878mscaffold_3541575543121
Al0321.2 MDisagree by Marco analysis ------TP Ciclev10020878mscaffold_3541575543121
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Af1114 ------TP Ciclev10022658mscaffold_3602713605468
Af1073 O-----TP Ciclev10021041mscaffold_3632882635612
Gmom11 ------TP Ciclev10019184mscaffold_3680835684433
Wy0100 ------TP Ciclev10018814mscaffold_3688264692703
Cp0403 ------TP Ciclev10022161mscaffold_3749176751194
Cp2048 ------TP Ciclev10024054mscaffold_3807021808331
Fb0423 O-----TP Ciclev10020919mscaffold_3867235871452
Fb0130 ------TP Ciclev10021969mscaffold_3894965897547
Tf0289 ------SI207TP Ciclev10020486mscaffold_3915818919213J C_unshiu_01070:mRNA_6.1C_unshiu_010704354546732Putative E3 ubiquitin-protein ligase UBR7
Tf0439 ------TP Ciclev10020486mscaffold_3915818919213
Af1090 ------TP Ciclev10019200mscaffold_3951691958430
Ov0102 ------TP Ciclev10019301mscaffold_3972289976751
Tf0010 ------TP Ciclev10021038mscaffold_310542571056078J C_unshiu_00609:mRNA_18.1C_unshiu_006097788379313Putative WRKY transcription factor 41AGI-05
Cp0401 ------TP Ciclev10022489mscaffold_310561161057706
Af1237 ------TP Ciclev10021146mscaffold_310580121060668
Tf0127 ------TP Ciclev10023918mscaffold_310844671086978
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Af1209 ------TP Ciclev10022439mscaffold_312811191281817
Tf0091 ------TP Ciclev10019140mscaffold_313011921305787
Ov0312 ------TP Ciclev10018858mscaffold_313441921349935J C_unshiu_00541:mRNA_19.1C_unshiu_00541170170175878SpastinSA-098.022
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Cp2046 ------TP Ciclev10023047mscaffold_314653011468225
Lp0139 ------TP Ciclev10021991mscaffold_314701631473304
Bf0156 ------TP Ciclev10021991mscaffold_314701631473304
Cp0243 ------TP Ciclev10019694mscaffold_315826751586208
Tf0141 ------TP Ciclev10019130mscaffold_315939791598159
Tf0342 ------SI151TP Ciclev10019088mscaffold_316494101655963J C_unshiu_00343:mRNA_23.1C_unshiu_00343203038209504DNA repair helicaseAGI-055.510
Lp0021 AtAvailable marker O----OTP Ciclev10021502mscaffold_317716681774647J C_unshiu_00534:mRNA_8.2C_unshiu_005345350855845Aquaporin
Gmom03 ------TP Ciclev10019436mscaffold_318646041871328J C_unshiu_01325:mRNA_3.1C_unshiu_01325787614474Bromo-adjacent-like (BAH) domain proteinAGI-057.888
Cp1586 ------TP Ciclev10019696mscaffold_318811561887598
Fb0346 ------TP Ciclev10021000mscaffold_320024272008126
Tf0447 ------TP Ciclev10021000mscaffold_320024272008126
Cp1405 ------TP Ciclev10021000mscaffold_320024272008126
Tf0152 AAvailable marker O---OOTP Ciclev10021000mscaffold_320024272008126J C_unshiu_01105:mRNA_2.1C_unshiu_0110536818106AT-hook motif nuclear localized protein 1AGI-058.506
Vs0004 ------TP Ciclev10021761mscaffold_320786912083111J C_unshiu_00490:mRNA_23.1C_unshiu_00490182148190847Nucleosome assembly proteinKmG-0651.244
Tf0317 ------SI145TP Ciclev10021941mscaffold_321068102109266J C_unshiu_00490:mRNA_19.1C_unshiu_00490159122161521Transcription factor bHLH47
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1304 ------TP Ciclev10019494mscaffold_322104852215202
Cp0500 ------TP Ciclev10022359mscaffold_322923992293655
Af1198 ------TP Ciclev10021819mscaffold_323196752322962
Tf0328 ------SI039,SI180TP Ciclev10021606mscaffold_325307082533942J C_unshiu_00509:mRNA_27.1C_unshiu_00509178211181426Transcription factor bHLH79
Mf0020 ------TP Ciclev10023252mscaffold_326458452647776NoSA-0530.880
Mf0068 ------TP Ciclev10023101mscaffold_327181862719011
Af1159 ------TP Ciclev10022925mscaffold_327744652775592
Af1675 ------TP Ciclev10024649mscaffold_327933652795811
Af1466 ------TP Ciclev10022406mscaffold_328037852805325
Ov0012 ------TP Ciclev10019638mscaffold_329331212937460J C_unshiu_00092:mRNA_50.1C_unshiu_00092356984361021Aldehyde dehydrogenaseKmG-05S100.000
Al0637 AAvailable marker O----OSI353TP Ciclev10019147mscaffold_329396202941934J C_unshiu_00092:mRNA_51.1C_unshiu_00092363486365791Spotted leaf protein, putative
Al0317 ------TP Ciclev10021392mscaffold_330062183008357J C_unshiu_00092:mRNA_60.1C_unshiu_00092425854427887CASP-like protein 4A2KmG-05S16.871JtR-059.525
Al0318Al0318.2 AAvailable marker -----OTP Ciclev10021392mscaffold_330062183008357
Af1666 ------TP Ciclev10019037mscaffold_330242953028262
Cp0965 ------TP Ciclev10020405mscaffold_332012063204377
Af1253 ------TP Ciclev10020405mscaffold_332012063204377J C_unshiu_00163:mRNA_29.1C_unshiu_00163211551214568Phosphate/phosphoenolpyruvate translocatorAGI-0524.709
Cp1912 ------TP Ciclev10020299mscaffold_332418623247042
Af1158 ------TP Ciclev10020023mscaffold_332418623247042
Cp2223 OOthers ------TP Ciclev10022371mscaffold_334833343485637J C_unshiu_00933:mRNA_9.1C_unshiu_009338695889273Protein LATERAL ORGAN BOUNDARIESAGI-0525.049
Bf0174 O-----SI282TP Ciclev10019861mscaffold_335515423555978J C_unshiu_00120:mRNA_17.1C_unshiu_00120130029134158Atp-dependent RNA helicaseAGI-0525.049
Af1367 ------TP Ciclev10022240mscaffold_336434423647377
Af1357 ------TP Ciclev10019924mscaffold_336502943652372
Cp1598 AAvailable marker ----OOTP Ciclev10021001mscaffold_338023873805494J C_unshiu_00849:mRNA_13.2C_unshiu_00849729357582431 kDa ribonucleoproteinAGI-0512.715
Af1643 ------TP Ciclev10021001mscaffold_338023873805494
Cp2112 ------TP Ciclev10019054mscaffold_339154553918620
Lp0215 ------TP Ciclev10019069mscaffold_339196563924283
Ov0316 ------TP Ciclev10020995mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43JtR-0531.749
Ov0317Ov0316.2 ------TP Ciclev10020995mscaffold_339630243966516
Af1633 ------TP Ciclev10020304mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0767.201
Tf0051 ------SI027,SI214TP Ciclev10021952mscaffold_339640363966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0525.590
Cp2229 AAvailable marker ----OOTP Ciclev10022058mscaffold_341174854120274J C_unshiu_00318:mRNA_6.1C_unshiu_003184437647085Nucleoside diphosphate kinaseAGI-0527.135
Al0312 ------TP Ciclev10021037mscaffold_341449394148359
Af1679 ------TP Ciclev10021896mscaffold_342601264262819J C_unshiu_00186:mRNA_34.1C_unshiu_00186288266290432Adenylate kinaseAGI-0529.035
Al0207 OOthers ------TP Ciclev10020027mscaffold_343668024370111J C_unshiu_00186:mRNA_18.1C_unshiu_00186178635181547SNF1-related protein kinase regulatory subunit gamma-1AGI-0984.537JtR-09S9.929
Af1594 ------TP Ciclev10018838mscaffold_344011594407506
Af1453 ------TP Ciclev10023068mscaffold_346632114664667J C_unshiu_01589:mRNA_7.1C_unshiu_015892906337936Hypothetical proteinAGI-0527.956
Ov0409 ------TP Ciclev10022219mscaffold_347360474740432
Tf0294 AAvailable marker O---OOTP Ciclev10021365mscaffold_347947014799518J C_unshiu_00135:mRNA_58.2C_unshiu_00135398519403121Ureidoglycine aminohydrolase isoform 1AGI-0527.135
Cp1533 ------TP Ciclev10021868mscaffold_348317514834270J C_unshiu_00768:mRNA_14.1C_unshiu_00768110682113065Lil3 proteinAGI-0529.039
Tf0331 ------TP Ciclev10021868mscaffold_348317514834270
Cp1529 ------TP Ciclev10021432mscaffold_348409474846859
Tf0158 ------TP Ciclev10019607mscaffold_348831244889593
Wy0006 O-----TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1KmG-05S19.072JtR-0519.698NAT-0521.803
Bf0165 ------SI280TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1AGI-0529.035NAT-0523.083RP-0519.690
Af1396 ------TP Ciclev10022545mscaffold_349206624923421J C_unshiu_00520:mRNA_16.2C_unshiu_00520166824167867Ribosomal protein L19 family proteinAGI-0528.041
Af1488 ------TP Ciclev10020747mscaffold_349598264964659
Edw004 ------TP Ciclev10021285mscaffold_352532815254755
Bf0158 -O-O--SI376TP Ciclev10021285mscaffold_352532815254755J C_unshiu_00795:mRNA_3.1C_unshiu_007952253423534Ethylene responsive element binding factor, putativeAGI-0529.035NAT-0521.258RP-0520.825
Wy0018 AAvailable marker ----OOTP Ciclev10021374mscaffold_353188745321054J C_unshiu_00442:mRNA_14.1C_unshiu_00442123398125451Homeobox-leucine zipper protein HAT3AGI-0529.033KmG-05S20.128JtR-0519.008
Tf0262 ------TP Ciclev10021374mscaffold_353188745321054
Tf0301 ------SI182TP Ciclev10021374mscaffold_353188745321054J C_unshiu_00442:mRNA_14.1C_unshiu_00442123398125451Homeobox-leucine zipper protein HAT3
Tf0436 ------TP Ciclev10021374mscaffold_353188745321054
Ov0301 Bno homozygous cultivar with minor allele ------SI078TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S23.526JtR-0519.932RP-0521.590
Ov0302Ov0301.2 ------TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factor
Tf0017 ------SI285TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorAGI-0528.617
Ov0006 Bno homozygous cultivar with minor allele O-----TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S25.587JtR-0827.669
Ov0007.2 ------TP Ciclev10021068mscaffold_353601135362918
Tf0186 ------TP Ciclev10024602mscaffold_353824905385009
Gn0050 ------TP Ciclev10024602mscaffold_353824905385009J C_unshiu_00014:mRNA_87.1C_unshiu_00014637698638678CRT binding factor 3AGI-0529.035KmG-05S21.884JtR-0519.008
Wy0046Wy0046.k ------TP Ciclev10024602mscaffold_353824905385009
Al0311 ------TP Ciclev10020637mscaffold_354563365459361
Af1452 ------TP Ciclev10018443mscaffold_355184575529974J C_unshiu_00900:mRNA_3.1C_unshiu_009002018630140Pheromone-processing carboxypeptidase kex1AGI-0529.863
Wy0054Wy0054.em ------TP Ciclev10018486mscaffold_355851425593506
Af1188 ------TP Ciclev10021960mscaffold_356066015609366
Su0004 ------TP Ciclev10022825mscaffold_358294595830556
Cp0073 O-----TP Ciclev10020501mscaffold_359722885978062J C_unshiu_00997:mRNA_9.1C_unshiu_009976925775059TransaldolaseAGI-0534.924
Al0516 ------TP Ciclev10019134mscaffold_359810665985524
Af1164 ------TP Ciclev10019787mscaffold_359810665985524
Ov0103 ------TP Ciclev10019410mscaffold_359912815995312
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Af1099 ------TP Ciclev10019462mscaffold_360724606076187
Bf0138 MDisagree by Marco analysis O-----TP Ciclev10019462mscaffold_360724606076187J C_unshiu_00428:mRNA_16.2C_unshiu_00428119232121021Oxygen-evolving enhancer protein 2, chloroplasticNAT-0514.555RP-0524.995
Lp0143 Bno homozygous cultivar with minor allele ------TP Ciclev10019139mscaffold_360769496080875J C_unshiu_00159:mRNA_40.1C_unshiu_00159339926343475Translation elongation factor GAGI-0545.297JtR-0518.056
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Al0335 ------TP Ciclev10021844mscaffold_361312146135849
Lp0207 O-----TP Ciclev10021695mscaffold_361403326142252J C_unshiu_01103:mRNA_8.1C_unshiu_011036753169104Protein ODORANT1AGI-0545.374RP-0525.010
Cp0076 O-----TP Ciclev10021577mscaffold_363291336332201J C_unshiu_01248:mRNA_3.1C_unshiu_012483903142057ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0535.411
Af1221 ------TP Ciclev10022216mscaffold_363291336332201
Cp1490 ------TP Ciclev10021970mscaffold_363693986372018
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Al0327Al0326.2 ------TP Ciclev10022558mscaffold_364093116411254
Bf0233 MDisagree by Marco analysis O-----SI359TP Ciclev10019826mscaffold_365022316504139J C_unshiu_00521:mRNA_1.1C_unshiu_0052124494274Cytochrome P450 76C2AGI-0542.581RP-0527.235
If0222 ------TP Ciclev10021958mscaffold_365418686545524
Cp1489 ------TP Ciclev10021127mscaffold_365773606582553
Af1577 ------TP Ciclev10021651mscaffold_366029946605239
Cp1488Cp1488.1 ------TP Ciclev10021651mscaffold_366029946605239
Cp1488.2 ------TP Ciclev10021651mscaffold_366029946605239
Cp1585 MDisagree by Marco analysis ------TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green protein
Tf0083 ------SI129TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Tf0282 ------TP Ciclev10021334mscaffold_366549976660313
Al0251 ------TP Ciclev10021340mscaffold_366951716697430
Mf0091 ------TP Ciclev10019105mscaffold_367484066756264
Tf0108 ------TP Ciclev10021923mscaffold_368284816829499
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Tf0079 MDisagree by Marco analysis O--O--SI270,SI294TP Ciclev10021287mscaffold_370470247049430J C_unshiu_00425:mRNA_7.1C_unshiu_004253560838027Heat stress transcription factor B-4AGI-0545.092
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Cp1817 ------TP Ciclev10018833mscaffold_371636977167661
Edp003 ------TP Ciclev10020967mscaffold_371977127199779
Tf0115 ------TP Ciclev10020967mscaffold_371977127199779
Gmom07 ------TP Ciclev10021492mscaffold_372486277253007
Tf0099.2 ------TP Ciclev10019949mscaffold_372866617290182
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Mf0017 Bno homozygous cultivar with minor allele ------TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinAGI-0544.674
Cp2208 AAvailable marker -----OTP Ciclev10021564mscaffold_374201767425027J C_unshiu_00995:mRNA_4.1C_unshiu_009953903143144D-ribulose-5-phosphate-3-epimerase isoform 1
Af1160 ------TP Ciclev10022213mscaffold_374253537428313
Fb0369 ------TP Ciclev10019885mscaffold_377921887795727J C_unshiu_01545:mRNA_3.1C_unshiu_015453755939424AT-rich interactive domain-containing protein 2AGI-0544.172KmG-05S30.809JtR-0516.246
Ov0309 ------TP Ciclev10022230mscaffold_380786098083078
Bf0177 ------SI060TP Ciclev10022075mscaffold_381866898189902J C_unshiu_00154:mRNA_43.2C_unshiu_00154341574344576Phosphoserine phosphataseAGI-0544.047
Cp1815 OOthers ------TP Ciclev10022373mscaffold_382563988257886J C_unshiu_00154:mRNA_28.1C_unshiu_00154274299275412Wiskott-Aldrich syndrome protein family member 2AGI-0551.501
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Edp002 ------TP Ciclev10022479mscaffold_384864918488997
Tf0145 ------SI092TP Ciclev10022479mscaffold_384864918488997J C_unshiu_00154:mRNA_7.1C_unshiu_001544913160112Floral homeotic protein APETALA 1
Tf0376 AAvailable marker O---OOSI072TP Ciclev10022680mscaffold_385282928529236J C_unshiu_00154:mRNA_1.1C_unshiu_00154983210761CRT binding factor 3AGI-0541.853
Bf0103 ------TP Ciclev10021205mscaffold_385562418560871
Cp0835 ------TP Ciclev10019790mscaffold_386404208644420
Tf0001.2 AAvailable marker OOO-OOTP Ciclev10020248mscaffold_386475298652282J C_unshiu_00580:mRNA_10.1C_unshiu_005807511881473Transcription factor BIM1AGI-0541.893
Tf0078.2 ------TP Ciclev10020248mscaffold_386475298652282
Cp0125 ------TP Ciclev10018700mscaffold_387186538721659
Af1101 ------TP Ciclev10022644mscaffold_388436448845811
Cp1958 ------TP Ciclev10021818mscaffold_389104548913829
Tf0350 OOthers O-----SI132TP Ciclev10019034mscaffold_389147448921411J C_unshiu_00695:mRNA_7.1C_unshiu_006957148377987Acetyl-coenzyme A synthetaseAGI-0543.295
Af1506 ------TP Ciclev10019034mscaffold_389147448921411
Af1595 ------TP Ciclev10022641mscaffold_390401819045543
Bf0402 ------TP Ciclev10020232mscaffold_391372499144663J C_unshiu_00058:mRNA_19.1C_unshiu_00058104866110977TRNA-specific adenosine deaminase-like protein 3AGI-0543.970
Wy0010 ------TP Ciclev10019848mscaffold_394660719468445
Lp0235 O-----TP Ciclev10019848mscaffold_394660719468445J C_unshiu_00227:mRNA_19.1C_unshiu_00227186549194369Nepenthesin IIAGI-0543.412RP-0544.731
Af1471 ------TP Ciclev10022208mscaffold_397477759750640
Tf0268 AAvailable marker O---OOTP Ciclev10021157mscaffold_31014090410142752J C_unshiu_00149:mRNA_29.1C_unshiu_00149326478328059Transcription factor MYB21AGI-0543.800
Tf0278 ------TP Ciclev10021157mscaffold_31014090410142752
Edb005 ------TP Ciclev10021157mscaffold_31014090410142752
Cp0540 ------TP Ciclev10020181mscaffold_31042731310435293J C_unshiu_02340:mRNA_1.1C_unshiu_0234020058306DNA repair protein reca, putativeAGI-0542.191
Tf0011.2 OOthers O-----TP Ciclev10018614mscaffold_31107879811089090J C_unshiu_02207:mRNA_3.1C_unshiu_02207980219021Hypothetical proteinAGI-0542.191
Cp0106 MDisagree by Marco analysis ------TP Ciclev10020606mscaffold_31186776511869679J C_unshiu_00741:mRNA_6.1C_unshiu_007414498955203Wall associated kinase-like 6, putativeAGI-0340.566
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Af1390 ------TP Ciclev10021895mscaffold_31225417712259003
Cp2145 ------TP Ciclev10021983mscaffold_31241333712415802
Af1007 ------TP Ciclev10021398mscaffold_31281473112817148
Cp1628 ------TP Ciclev10021963mscaffold_31282291112825620J C_unshiu_02666:mRNA_2.1C_unshiu_026661010412687Rhodanese/cell cycle control phosphatase superfamily proteinAGI-0541.272
Af1684 ------TP Ciclev10022811mscaffold_31290146312904143
Cp2147 ------TP Ciclev10019578mscaffold_31294548112949086
Vt0011 AAvailable marker ----OOTP Ciclev10021162mscaffold_31298441112986574J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0541.306JtR-0537.780
Tf0375 ------TP Ciclev10022365mscaffold_31303465413036082J C_unshiu_00020:mRNA_62.1C_unshiu_00020527751528816Homeobox leucine zipper proteinAGI-0540.558
Af1431 ------TP Ciclev10019463mscaffold_31314518813150117
Cp1627 AAvailable marker ----OOTP Ciclev10022024mscaffold_31330939813310636J C_unshiu_00431:mRNA_6.1C_unshiu_004314450745451Chloroplast small heat shock proteinAGI-0541.272
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Tf0135 ------TP Ciclev10019781mscaffold_31397737713980070
Ov0515 ------TP Ciclev10020337mscaffold_31487842714882285J C_unshiu_01955:mRNA_4.1C_unshiu_019552197026584DUF760 family proteinKmG-0140.558
Cp0280 ------TP Ciclev10020337mscaffold_31487842714882285
Cp1330 ------TP Ciclev10019667mscaffold_31489816814903449
Cp0319 ------TP Ciclev10021170mscaffold_31499357914994805
Cte998 ------TP Ciclev10020767mscaffold_31607861916080683
Af1047 ------TP Ciclev10019002mscaffold_31635722716363309J C_unshiu_01252:mRNA_3.1C_unshiu_012526066966705NADH dehydrogenase subunit 11AGI-0541.306
Af1048 ------TP Ciclev10019002mscaffold_31635722716363309
Ov0019 ------TP Ciclev10019002mscaffold_31635722716363309
Af1500 ------TP Ciclev10022594mscaffold_31695742716959735
Tf0153 AAvailable marker O---OOTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit betaAGI-0541.267
Tf0154 AAvailable marker O----OTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit beta
Lp0109 OOthers O-----TP Ciclev10020902mscaffold_31756112717562695
Ov0311 ------TP Ciclev10022001mscaffold_31834116618342395J C_unshiu_00417:mRNA_9.1C_unshiu_004179342694543Kunitz trypsin inhibitorKmG-0410.598NAT-0982.730
Wy0002 ------TP Ciclev10022129mscaffold_31847296718473951
Af1635 ------TP Ciclev10020874mscaffold_31851746918520307
Cp0190 OOthers ------TP Ciclev10023646mscaffold_31864842618650443J C_unshiu_00618:mRNA_5.1C_unshiu_006182027322297UPF0426 protein, chloroplasticAGI-0627.617
Cp2088 ------TP Ciclev10021333mscaffold_31924478319251332
Tf0028 ------SI377TP Ciclev10022572mscaffold_31978071119782241J C_unshiu_00443:mRNA_20.1C_unshiu_00443195567202424MADS-box transcription factor
Tf0128.2 ------TP Ciclev10023354mscaffold_31993649919941380
Af1115 ------TP Ciclev10020832mscaffold_32057778620583404
Cp0464 ------TP Ciclev10021386mscaffold_32075071220753437
Bf0416 ------TP Ciclev10020574mscaffold_32076297420770394
Cp1483 ------TP Ciclev10020574mscaffold_32076297420770394J C_unshiu_00692:mRNA_14.1C_unshiu_00692122321129331Abhydrolase domain-containing protein 11AGI-0541.162
Cp0832 ------TP Ciclev10021626mscaffold_32093193920936268
Cp1556 Bno homozygous cultivar with minor allele ------TP Ciclev10018756mscaffold_32143249421440948J C_unshiu_00175:mRNA_9.1C_unshiu_001759133899600Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplasticAGI-0540.337
Cp0160 ------TP Ciclev10019883mscaffold_32194055121944032J C_unshiu_00272:mRNA_20.1C_unshiu_00272187755191248EndoglucanaseAGI-0541.267
Tf0007 ------TP Ciclev10018564mscaffold_32272121722725936
Af1058 ------TP Ciclev10018655mscaffold_32300102623009675
Af1337 ------TP Ciclev10024178mscaffold_32341957423420180
Tf0122 ------TP Ciclev10020009mscaffold_32462062324627357J C_unshiu_02869:mRNA_1.1C_unshiu_02869188510204Hypothetical proteinAGI-0541.306
Cp0278 ------TP Ciclev10022561mscaffold_32475079424752907J C_unshiu_00286:mRNA_8.1C_unshiu_002867306881236Hypothetical proteinAGI-04122.142
Af1272 ------TP Ciclev10019689mscaffold_32479635124800588
Af1087 O-----TP Ciclev10019689mscaffold_32479635124800588J C_unshiu_00286:mRNA_17.1C_unshiu_00286132648135466Glycine hydroxymethyltransferaseAGI-0541.306
Ov0420 MDisagree by Marco analysis ------TP Ciclev10019489mscaffold_32484038624845254J C_unshiu_00286:mRNA_25.1C_unshiu_00286176709181573Methylenetetrahydrofolate reductase (NAD(P)H)AGI-0541.306JtR-0541.208
Ov0421Ov0420.2 ------TP Ciclev10019489mscaffold_32484038624845254
Bf0184 O-----TP Ciclev10021248mscaffold_32489355124898675J C_unshiu_00286:mRNA_27.1C_unshiu_00286216376220366Cysteine protease ATG4BAGI-0541.306
Af1606 ------TP Ciclev10021248mscaffold_32489355124898675
Al0511 ------TP Ciclev10020158mscaffold_32505342525057795
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Cp0921 OOthers ------TP Ciclev10022149mscaffold_32544885825451858
Cp0920 ------TP Ciclev10020914mscaffold_32545206225455844
Al0412 ------TP Ciclev10023374mscaffold_32561274125615635
Af1605 ------TP Ciclev10021314mscaffold_32629794926304739
Mf0012 AAvailable marker -----OSI131TP Ciclev10019300mscaffold_32651717626525778No
Tf0071 ------SI084,SI146TP Ciclev10022102mscaffold_32661074726612959J C_unshiu_00167:mRNA_6.1C_unshiu_001675730062494HAUS augmin-like complex subunitAGI-0346.274
Af1581 ------TP Ciclev10024663mscaffold_32709241427093612
Mf0085 ------TP Ciclev10018526mscaffold_32829314228298913
Ov0503 AtAvailable marker O----OTP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5NAT-0519.042
Ov0504Ov0503.2 ------TP Ciclev10020582mscaffold_32838221828386683
Gn0056 ------TP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5AGI-0539.424
Af1168 ------TP Ciclev10022842mscaffold_32838962528390574
Tf0053 ------SI305TP Ciclev10022321mscaffold_32915342529156189J C_unshiu_01169:mRNA_3.1C_unshiu_011693914141442Peptide methionine sulfoxide reductase B5AGI-0542.265
Af1342 ------TP Ciclev10020692mscaffold_32929211129295993
Af1040 ------TP Ciclev10019364mscaffold_32935185429354190
Gn0064 ULess informative for main cultivars O-----SI144,SI380TP Ciclev10019364mscaffold_32935185429354190J C_unshiu_00549:mRNA_6.1C_unshiu_0054939588419219-cis-epoxycarotenoid dioxygenase 1AGI-0542.191RP-0551.531
Wy0063Wy0063.em ------TP Ciclev10021336mscaffold_32939509429402560J C_unshiu_00549:mRNA_8.1C_unshiu_005498314990542Splicing regulatory glutamine/lysine-rich protein 1AGI-0133.445
Wy0064Wy0064.em ------TP Ciclev10021336mscaffold_32939509429402560J C_unshiu_00549:mRNA_8.1C_unshiu_005498314990542Splicing regulatory glutamine/lysine-rich protein 1
Al0405 ------TP Ciclev10024622mscaffold_33002199830023908
Af1400 ------TP Ciclev10024198mscaffold_33004214030047495
Af2871 ------TP Ciclev10019876mscaffold_33006633930070903
Cp0532 ------TP Ciclev10020319mscaffold_33039381130398972J C_unshiu_00501:mRNA_15.1C_unshiu_00501133280137847Solanesyl diphosphate synthaseAGI-0542.168
Lp0102 MDisagree by Marco analysis O-----SI080,SI319,SI360,SI378TP Ciclev10020840mscaffold_33064873230651259J C_unshiu_00759:mRNA_1.1C_unshiu_007599173353Senescence-related gene 1AGI-0542.737KmG-05S41.895JtR-0528.682NAT-0537.917RP-0551.879
Af1641 ------TP Ciclev10021239mscaffold_33072184230725003
Af1612 ------TP Ciclev10018748mscaffold_33078411930796076
Tf0183 ------TP Ciclev10021488mscaffold_33087388630877367
Af1654 ------TP Ciclev10020789mscaffold_33113356631137650
Mf0087 ------TP Ciclev10023194mscaffold_33206343032064847
Af1184 ------TP Ciclev10019895mscaffold_33210577432108155
Tf0089 ------TP Ciclev10020367mscaffold_33289585432900578
Tf0421 ------TP Ciclev10020367mscaffold_33289585432900578
Tf0352 ------TP Ciclev10022757mscaffold_33290402332906262
Af1496 ------TP Ciclev10022757mscaffold_33290402332906262
Mf0065 ------TP Ciclev10021816mscaffold_33292566432929662
Ov0112 OOthers ------TP Ciclev10021050mscaffold_33325246333253730J C_unshiu_01571:mRNA_4.1C_unshiu_015714383645084SulfotransferaseKmG-05S42.335RP-0553.076
Ov0113Ov0112.2 ------TP Ciclev10021050mscaffold_33325246333253730
Tf0133.2 ------TP Ciclev10018575mscaffold_33334969033357142
Gmom05 ------TP Ciclev10024623mscaffold_33372293433727855
Cp0748 ------TP Ciclev10022288mscaffold_33467345134674900J C_unshiu_00669:mRNA_14.1C_unshiu_00669103814104779Light-dependent short hypocotyls proteinAGI-0133.562
Tf0353 MDisagree by Marco analysis O-----SI087TP Ciclev10018691mscaffold_33469666134702240J C_unshiu_00669:mRNA_17.2C_unshiu_00669126539133312Cell division cycle 5-like proteinAGI-0853.069
Lp0301.2 ------TP Ciclev10020671mscaffold_33532197135324490
Gn0072.2 ------TP Ciclev10020671mscaffold_33532197135324490
Gn0072.3 ------TP Ciclev10020671mscaffold_33532197135324490
Ov0516 ------TP Ciclev10020524mscaffold_33533219135335063
Af1317 ------TP Ciclev10022803mscaffold_33593219835935023
Lp0225 ------TP Ciclev10020487mscaffold_33594391535948556
Lp0111 ------TP Ciclev10022339mscaffold_33609600936099799
Af1151 ------TP Ciclev10022903mscaffold_33660819736611090
Af1427 ------TP Ciclev10021942mscaffold_33696302636965935
Af1192 ------TP Ciclev10022723mscaffold_33709478537098257
Af1592 ------TP Ciclev10021425mscaffold_33759762437600961
Tf0012 AAvailable marker ----OOTP Ciclev10018673mscaffold_33760149337607586J C_unshiu_00502:mRNA_21.1C_unshiu_00502155419162660Protein NLP8AGI-0547.173
Al0024.2 ------TP Ciclev10020911mscaffold_33786340737865625
Bf0401 ------TP Ciclev10019609mscaffold_33790609037910975
Cp0646 ------TP Ciclev10020263mscaffold_33811119138116265
Bf0121 ------TP Ciclev10020263mscaffold_33811119138116265
Tf0411 OOthers O-----TP Ciclev10020263mscaffold_33811119138116265J C_unshiu_00523:mRNA_15.1C_unshiu_00523100297104594Putative transcription factor PosF21AGI-0548.613
Tf0146 OOthers ------TP Ciclev10020263mscaffold_33811119138116265
Tf0081 ------SI038,SI324TP Ciclev10021980mscaffold_33821446838216861J C_unshiu_00575:mRNA_8.1C_unshiu_005754769351431Leucine-rich repeat disease resistance protein-likeAGI-0548.590
Wy0013 ------TP Ciclev10021105mscaffold_33822922138232245
Af1374 ------TP Ciclev10022450mscaffold_33909228539094629
Af1165 ------TP Ciclev10021620mscaffold_33933173139333098
Af1587 ------TP Ciclev10022920mscaffold_33948338739486219
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Fb2159 ------SI205,SI300TP Ciclev10021136mscaffold_33960643139608387J C_unshiu_00037:mRNA_76.1C_unshiu_00037551437553057Pirin family proteinAGI-0549.856KmG-05S68.781JtR-0541.770SA-09
Lp0133 AtAvailable marker O---OOTP Ciclev10021187mscaffold_33965761339660222J C_unshiu_00037:mRNA_84.1C_unshiu_00037603033605555Class I chitinaseAGI-0548.590KmG-05S60.040NAT-0526.483RP-0565.128
Lp0137 ------TP Ciclev10021187mscaffold_33965761339660222
Af1328 ------TP Ciclev10022653mscaffold_33983468039837971
Af1685 ------TP Ciclev10023782mscaffold_34008698540089114J C_unshiu_00335:mRNA_9.1C_unshiu_003357616477436Hypothetical proteinAGI-0556.481
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Af1662 ------