Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Cp0336			-	-	-	-	-	-		Ciclev10004655m	scaffold_9	31244440	31250356	C_unshiu_00003:mRNA_113.1	C_unshiu_00003	809668	815079	ABC transporter D family member 2, chloroplastic	AGI-03	79.515
Tf0170			-	-	-	-	-	-		Ciclev10005681m	scaffold_9	31237089	31243866
Fb0708			-	-	-	-	-	-		Ciclev10005455m	scaffold_9	31237089	31243737	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	74.195			JtR-032	19.857
Tf0022		MDisagree by Marco analysis	O	-	-	-	-	-	SI116	Ciclev10005681m	scaffold_9	31237089	31243866	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	78.631
Tf0292		OOthers	O	-	-	-	-	-		Ciclev10006112m	scaffold_9	31139789	31143240	C_unshiu_00003:mRNA_98.2	C_unshiu_00003	698480	711976	Protein strawberry notch	AGI-03	77.793
Af1644			-	-	-	-	-	-		Ciclev10005467m	scaffold_9	31105158	31108119
Bf0150			-	-	-	-	-	-	SI316,SI370	Ciclev10004834m	scaffold_9	31018836	31027361	C_unshiu_00003:mRNA_85.1	C_unshiu_00003	596288	610960	Aldehyde dehydrogenase	AGI-03	77.920							RP-03	77.748
Af1589			-	-	-	-	-	-		Ciclev10005524m	scaffold_9	30995129	30999295	C_unshiu_00003:mRNA_80.1	C_unshiu_00003	574672	576940	Peroxisomal 2,4-dienoyl-CoA reductase	AGI-03	77.744
Tf0334			-	-	-	-	-	-	SI034	Ciclev10007003m	scaffold_9	30983347	30984159	C_unshiu_00003:mRNA_76.2	C_unshiu_00003	557862	561962	Nuclear transcription factor Y subunit C-9
Al0506			-	-	-	-	-	-		Ciclev10005101m	scaffold_9	30836435	30841216
Tf0361			-	-	-	-	-	-		Ciclev10005102m	scaffold_9	30778803	30783116
Af1552			-	-	-	-	-	-		Ciclev10005340m	scaffold_9	30527060	30531535
Af1064			-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Mf0101		OOthers	-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Ov0109		MDisagree by Marco analysis	O	-	-	-	-	-	SI172,SI202	Ciclev10004309m	scaffold_9	30513333	30517676	C_unshiu_00003:mRNA_13.1	C_unshiu_00003	122283	126575	Elongation factor 2	AGI-03	71.060			JtR-032	13.729			RP-03	71.532
Al0249			-	-	-	-	-	-		Ciclev10004782m	scaffold_9	30490331	30496586
Mf0063			-	-	-	-	-	-		Ciclev10006352m	scaffold_9	30456144	30458784
Lp0009		DDominant marker	-	-	-	-	-	-		Ciclev10005585m	scaffold_9	30171791	30177202	C_unshiu_00134:mRNA_8.1	C_unshiu_00134	71410	76705	Phosphatase 2C 76 isoform 1			KmG-05S	36.573	JtR-05	12.427
Tf0143			-	-	-	-	-	-	SI127	Ciclev10004758m	scaffold_9	30040457	30044615	C_unshiu_00134:mRNA_22.1	C_unshiu_00134	203848	206784	Sigma factor	AGI-03	68.846
Al0328			-	-	-	-	-	-		Ciclev10006155m	scaffold_9	29952005	29956306
Cp0234			-	-	-	-	-	-		Ciclev10004626m	scaffold_9	29874798	29879735
Lp0008			-	-	-	-	-	-		Ciclev10004626m	scaffold_9	29874798	29879735
Af1673			-	-	-	-	-	-		Ciclev10005691m	scaffold_9	29749063	29751434
Af1558			-	-	-	-	-	-		Ciclev10005504m	scaffold_9	29608462	29612474
Bf0004			-	-	-	-	-	-	SI273	Ciclev10005212m	scaffold_9	29563003	29568705	C_unshiu_00056:mRNA_33.1	C_unshiu_00056	220997	225323	Pentatricopeptide repeat superfamily protein, putative isoform 1	AGI-03	58.312
Af1583			-	-	-	-	-	-		Ciclev10006246m	scaffold_9	29549722	29551403
Af1513			-	-	-	-	-	-		Ciclev10006024m	scaffold_9	29523786	29526379	C_unshiu_00056:mRNA_24.1	C_unshiu_00056	181282	183151	40S ribosomal protein S10	AGI-03	63.545
Af1327			-	-	-	-	-	-		Ciclev10006293m	scaffold_9	29498595	29499368
Gn0014.2		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181	C_unshiu_00056:mRNA_20.1	C_unshiu_00056	144107	146527	Beta-carotene hydroxylase 1
Cp1612			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Af1371			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Gn0077			-	-	-	-	-	-		Ciclev10005481m	scaffold_9	29488658	29491181
Ks9010		AAvailable marker	-	-	-	-	O	O		Ciclev10007188m	scaffold_9	29460866	29463385	C_unshiu_00056:mRNA_15.1	C_unshiu_00056	116304	118823	Receptor-like protein kinase HERK 1	AGI-04	62.499	KmG-04	39.019
Af1344			-	-	-	-	-	-		Ciclev10006134m	scaffold_9	29408194	29411173
Tf0237			-	-	-	-	-	-		Ciclev10004502m	scaffold_9	29392885	29395387
Af1640			-	-	-	-	-	-		Ciclev10005272m	scaffold_9	29342369	29345806
Fb0329			-	-	-	-	-	-		Ciclev10004180m	scaffold_9	29237838	29242883	C_unshiu_00606:mRNA_2.1	C_unshiu_00606	13693	18703	Methyltransferase MT-A70 family protein isoform 1	AGI-03	60.686
Tf0008			-	-	-	-	-	-		Ciclev10006582m	scaffold_9	29169157	29173419
Af1179			-	-	-	-	-	-		Ciclev10006271m	scaffold_9	29136067	29137517
Af1638			-	-	-	-	-	-		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin	AGI-03	34.554
Ks9011		AAvailable marker	-	-	-	-	-	O		Ciclev10004755m	scaffold_9	28984972	28989373	C_unshiu_00045:mRNA_79.1	C_unshiu_00045	556440	562091	Tubulin					JtR-032
Al0628			-	-	-	-	-	-		Ciclev10004696m	scaffold_9	28974337	28977865	C_unshiu_00045:mRNA_76.1	C_unshiu_00045	547196	550605	O-glucosyltransferase rumi like			KmG-031	5.650
Af1361			-	-	-	-	-	-		Ciclev10005795m	scaffold_9	28903616	28907377
Tf0072			-	-	-	-	-	-		Ciclev10005403m	scaffold_9	28757274	28759075	C_unshiu_00045:mRNA_48.1	C_unshiu_00045	372168	373811	Heat stress transcription factor B-4	AGI-03	35.962
Ov0401		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10004762m	scaffold_9	28736008	28740315	No							KmG-08	58.635					SA-06
If0201			-	-	-	-	-	-		Ciclev10005030m	scaffold_9	28608335	28612490
Wy0050	Wy0050.k		-	-	-	-	-	-		Ciclev10005669m	scaffold_9	28556663	28560571
Af1263			-	-	-	-	-	-		Ciclev10005448m	scaffold_9	28494348	28496251
Tf0074			O	-	-	-	-	-		Ciclev10005366m	scaffold_9	28444512	28446074	C_unshiu_00045:mRNA_7.1	C_unshiu_00045	62608	63842	TCP family transcription factor	AGI-03	37.816
Mf0044			-	-	-	-	-	-		Ciclev10004832m	scaffold_9	28081760	28084212
Gn0079			-	-	-	-	-	-		Ciclev10004459m	scaffold_9	28065538	28070492
Af1255			-	-	-	-	-	-		Ciclev10006003m	scaffold_9	28061221	28063450
Mf0052			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032	C_unshiu_01194:mRNA_11.1	C_unshiu_01194	83573	84813	Envelope glycoprotein
Mf0052.2			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032
Af1343			-	-	-	-	-	-		Ciclev10006560m	scaffold_9	28035355	28036664
Al0418			-	-	-	-	-	-		Ciclev10004717m	scaffold_9	27765515	27767561
Fb0180			-	-	-	-	-	-	SI209	Ciclev10005370m	scaffold_9	27734482	27736035	C_unshiu_00252:mRNA_1.1	C_unshiu_00252	12109	13626	Hypothetical protein									RP-03	56.919
Ov0320			-	-	-	-	-	-		Ciclev10005968m	scaffold_9	27640074	27641178	C_unshiu_00252:mRNA_13.1	C_unshiu_00252	89281	90198	21 kDa protein									RP-03	56.919
Lp0035			-	-	-	-	-	-		Ciclev10005111m	scaffold_9	27259813	27263097
Ov0512		OOthers	O	-	-	-	-	-		Ciclev10006241m	scaffold_9	27198508	27199642	C_unshiu_00433:mRNA_19.1	C_unshiu_00433	116730	118286	Small heat shock protein	AGI-03	40.361	KmG-032	25.743	JtR-031		NAT-03
Af3218			-	-	-	-	-	-		Ciclev10005768m	scaffold_9	27154799	27158226
Bf0130			-	-	-	-	-	-	SI063,SI188	Ciclev10004858m	scaffold_9	26981498	26984277	C_unshiu_00095:mRNA_24.1	C_unshiu_00095	228406	230902	F-box family protein isoform 1	AGI-03	40.452
Tf0306			-	-	-	-	-	-		Ciclev10005750m	scaffold_9	26053930	26055086
Af1421			-	-	-	-	-	-		Ciclev10005570m	scaffold_9	26047509	26048622
Tf0038.2			-	-	-	-	-	-		Ciclev10004955m	scaffold_9	25922689	25932568
Cp1607			-	-	-	-	-	-		Ciclev10005637m	scaffold_9	25860665	25863110
Tf0219		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI076,SI267	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	49.250
Tf0396		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI035	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60
Tf0423			-	-	-	-	-	-		Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	50.361
Al0424			-	-	-	-	-	-		Ciclev10005576m	scaffold_9	25493378	25500370
Al0245			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839
Bf0020			-	-	-	-	-	-		Ciclev10005107m	scaffold_9	25185200	25188839	C_unshiu_00119:mRNA_25.1	C_unshiu_00119	238437	248656	Guanylate kinase	AGI-03	47.887							RP-03	37.189
Al0302		AAvailable marker	-	O	-	-	O	O	SI090,SI311	Ciclev10004372m	scaffold_9	25073693	25080376	C_unshiu_00119:mRNA_33.1	C_unshiu_00119	346131	352710	Putative seed imbibition protein	AGI-03	48.375	KmG-032	18.339	JtR-033		NAT-03	3.773	RP-03	36.113
Ov0416			-	-	-	-	-	-		Ciclev10004279m	scaffold_9	24807948	24823388
Af1338			-	-	-	-	-	-		Ciclev10004154m	scaffold_9	24666092	24671850
Af1006			-	-	-	-	-	-		Ciclev10005512m	scaffold_9	24661109	24664797
Vt0022			-	-	-	-	-	-		Ciclev10006852m	scaffold_9	24201196	24203794
Bf0221			-	-	-	-	-	-		Ciclev10005970m	scaffold_9	24195180	24198282	C_unshiu_00132:mRNA_22.1	C_unshiu_00132	211597	223530	Hypothetical protein	AGI-03	47.887							RP-03	37.193
Tf0234			-	-	-	-	-	-		Ciclev10005012m	scaffold_9	23476661	23480861
Fb0270			-	-	-	-	-	-		Ciclev10004347m	scaffold_9	23454445	23457114
Tf0064			-	-	-	-	-	-		Ciclev10005649m	scaffold_9	23409097	23411093
Tf0206			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Tf0384			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Af1586			-	-	-	-	-	-		Ciclev10005733m	scaffold_9	23119502	23122347	C_unshiu_00148:mRNA_17.1	C_unshiu_00148	145165	147922	Glycoprotein family protein	AGI-03	63.545
Mf0093			-	-	-	-	-	-		Ciclev10005964m	scaffold_9	22732690	22736939
Gn0067		OOthers	O	-	-	-	-	-	SI204,SI349	Ciclev10004730m	scaffold_9	22728310	22730086	C_unshiu_00295:mRNA_17.1	C_unshiu_00295	207257	208985	Lycopene beta-cyclase	AGI-03	46.274
Af1611			-	-	-	-	-	-		Ciclev10005702m	scaffold_9	22712688	22715627
Af1017			O	-	-	-	-	-		Ciclev10006402m	scaffold_9	22671554	22672639	No					AGI-03	46.274
Lp0039			-	-	-	-	-	-		Ciclev10004396m	scaffold_9	22309970	22314448
Vt0024			-	-	-	-	-	-		Ciclev10005069m	scaffold_9	21593473	21597037
Af1529			-	-	-	-	-	-		Ciclev10005711m	scaffold_9	21228791	21231253
Af1348			-	-	-	-	-	-		Ciclev10005778m	scaffold_9	21216748	21221111
Mf0095		OOthers	O	-	-	-	-	-	SI290	Ciclev10005778m	scaffold_9	21216748	21221111	C_unshiu_00160:mRNA_34.1	C_unshiu_00160	290257	294371	Transmembrane proteins 14C, putative isoform 1			KmG-032		JtR-031	11.958			RP-03	43.323
Cp1034		AtAvailable marker	-	-	-	-	O	O		Ciclev10005575m	scaffold_9	21107894	21109983	C_unshiu_00160:mRNA_22.1	C_unshiu_00160	182942	184946	Putative calcium-binding protein CML48	AGI-03	46.760
Lp0131			-	-	-	-	-	-		Ciclev10006247m	scaffold_9	20390517	20391131
Cp1772		OOthers	-	-	-	-	-	-		Ciclev10004137m	scaffold_9	20009769	20033079
Af1700			-	-	-	-	-	-		Ciclev10004322m	scaffold_9	18502293	18505531	C_unshiu_00138:mRNA_34.1	C_unshiu_00138	182719	186200	Putative receptor protein kinase TMK1	AGI-03	54.060
Cp1977		OOthers	-	-	-	-	-	-		Ciclev10004968m	scaffold_9	18174858	18179752
Ov0013		OOthers	-	-	-	-	-	-		Ciclev10005251m	scaffold_9	18058387	18060752	C_unshiu_00556:mRNA_14.1	C_unshiu_00556	103101	105466	Caffeic acid 3-O-methyltransferase	AGI-03	50.691	KmG-032	18.852	JtR-031	11.918			RP-03	38.986
Cp1184			-	-	-	-	-	-		Ciclev10005685m	scaffold_9	17809957	17817998
Gn0008		OOthers	-	-	-	-	-	-	SI176	Ciclev10005632m	scaffold_9	17789634	17793258	C_unshiu_00098:mRNA_1.1	C_unshiu_00098	5120	17442	Phytoene desaturase	AGI-03	46.274
Gn0007.2			-	-	-	-	-	-		Ciclev10007114m	scaffold_9	17778571	17785482
Fb0149			-	-	-	-	-	-		Ciclev10005274m	scaffold_9	17436969	17441987
Bf0229			-	-	-	-	-	-	SI253	Ciclev10004848m	scaffold_9	17242218	17245901	C_unshiu_00122:mRNA_16.1	C_unshiu_00122	118693	122329	Selenium binding protein	AGI-03	46.274							RP-03	37.885
Wy0036			-	-	-	-	-	-		Ciclev10004868m	scaffold_9	17114361	17116036
Lp0214			-	-	-	-	-	-		Ciclev10004881m	scaffold_9	17070431	17072209
Lp0013			-	-	-	-	-	-		Ciclev10004852m	scaffold_9	16971264	16973312	C_unshiu_00122:mRNA_43.1	C_unshiu_00122	389000	391027	Adenosylhomocysteinase			KmG-09	15.606
Tf0205		OOthers	O	-	-	-	-	-	SI274	Ciclev10005062m	scaffold_9	16383851	16393557	C_unshiu_00094:mRNA_29.1	C_unshiu_00094	262934	272307	UBX domain-containing protein 1	AGI-03	46.274
Tf0383			-	-	-	-	-	-		Ciclev10005062m	scaffold_9	16383851	16393557
Af1621			-	-	-	-	-	-		Ciclev10004420m	scaffold_9	15626737	15638532
Tf0117			-	-	-	-	-	-		Ciclev10005596m	scaffold_9	15107375	15113804	C_unshiu_00170:mRNA_11.1	C_unshiu_00170	91205	97326	Myb family transcription factor APL	AGI-03	46.274
Af1189			-	-	-	-	-	-		Ciclev10005793m	scaffold_9	14837074	14840606
Af1072			-	-	-	-	-	-		Ciclev10005792m	scaffold_9	13545137	13548134
Ov0104		AAvailable marker	O	-	-	-	O	O	SI216	Ciclev10004850m	scaffold_9	13440332	13442904	C_unshiu_02379:mRNA_2.1	C_unshiu_02379	22906	25482	Obtusifoliol 14-alpha demethylase	AGI-08	56.724			JtR-08	28.207
Gmom13			-	-	-	-	-	-		Ciclev10005787m	scaffold_9	13223034	13225922	C_unshiu_00620:mRNA_11.2	C_unshiu_00620	118042	120892	Ethylene-responsive transcription factor ERF114	AGI-08	56.724
Tf0121			-	-	-	-	-	-		Ciclev10005787m	scaffold_9	13223034	13225922
Tf0097			-	-	-	-	-	-		Ciclev10005329m	scaffold_9	13039313	13041944
Af1214			-	-	-	-	-	-		Ciclev10005447m	scaffold_9	12839345	12844087
Af1052			O	-	-	-	-	-		Ciclev10004444m	scaffold_9	12808154	12820311	C_unshiu_00508:mRNA_9.1	C_unshiu_00508	40385	58179	Hypothetical protein	AGI-08	56.724
Al0202			-	-	-	-	-	-		Ciclev10005495m	scaffold_9	12740846	12745213
Tf0210			-	-	-	-	-	-	SI183	Ciclev10004533m	scaffold_9	11993282	11999324	C_unshiu_00926:mRNA_13.1	C_unshiu_00926	108384	111875	Zinc finger protein NUTCRACKER	AGI-08	56.724
Cp0571			-	-	-	-	-	-		Ciclev10004533m	scaffold_9	11993282	11999324
Tf0388			O	-	-	-	-	-		Ciclev10004533m	scaffold_9	11993282	11999324
Lp0125			-	-	-	-	-	-		Ciclev10004499m	scaffold_9	11150758	11155385
Bf0119			O	-	-	-	-	-		Ciclev10005276m	scaffold_9	10744341	10746393
Gn0052			-	-	-	-	-	-		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein			KmG-032	15.450	JtR-031	12.830
Wy0032		OOthers	O	-	-	-	O	O		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein	AGI-03	46.121	KmG-032	14.572	JtR-031	12.840
Gn0097			-	-	-	-	-	-		Ciclev10005133m	scaffold_9	10246239	10248409	C_unshiu_00372:mRNA_8.1	C_unshiu_00372	77039	79209	Naringenin-chalcone synthase	AGI-02
Vt0004			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Ov0001			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Af1521			-	-	-	-	-	-		Ciclev10004680m	scaffold_9	9799746	9804461
Tf0037			-	-	-	-	-	-		Ciclev10005726m	scaffold_9	8466200	8470081
Fb0277			-	-	-	-	-	-		Ciclev10005726m	scaffold_9	8466200	8470081
Al0413		AAvailable marker	-	-	-	O	O	O	SI275,SI299	Ciclev10004620m	scaffold_9	7579900	7583093	C_unshiu_00063:mRNA_61.1	C_unshiu_00063	483279	486427	Chloroplast beta-amylase 3	AGI-03	46.197	KmG-032	19.570	JtR-031	10.395			RP-03	33.559
Ov0514			-	-	-	-	-	-		Ciclev10004975m	scaffold_9	7436355	7440439
Tf0178			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Wy0014			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Cp1500			-	-	-	-	-	-		Ciclev10004776m	scaffold_9	7080249	7086989	C_unshiu_00161:mRNA_19.1	C_unshiu_00161	150519	157206	3-isopropylmalate dehydratase large subunit	AGI-03	46.274
Af1498			-	-	-	-	-	-		Ciclev10006723m	scaffold_9	6766349	6768025	C_unshiu_00307:mRNA_26.2	C_unshiu_00307	212314	218407	Heterogeneous nuclear ribonucleoprotein 1	AGI-03	46.274
Af1449			-	-	-	-	-	-		Ciclev10006216m	scaffold_9	6697572	6699157
Lp0041		AAvailable marker	-	-	-	-	-	O		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28			KmG-032	17.549	JtR-031	14.643			RP-03	29.608
Af1456			-	-	-	-	-	-		Ciclev10006136m	scaffold_9	6354796	6356630	C_unshiu_00146:mRNA_22.1	C_unshiu_00146	205279	207014	50S ribosomal protein L28	AGI-03	46.298
Af1211			-	-	-	-	-	-		Ciclev10007095m	scaffold_9	6226731	6229337
Al0623			-	-	-	-	-	-		Ciclev10004560m	scaffold_9	5648639	5654374
Cp0018			-	-	-	-	-	-		Ciclev10005068m	scaffold_9	5605470	5610840	C_unshiu_00057:mRNA_49.1	C_unshiu_00057	415460	428173	Putative E3 ubiquitin-protein ligase HERC1	AGI-03	44.848
Ov0323			-	-	-	-	-	-		Ciclev10005490m	scaffold_9	5549195	5553148
Wy0020			-	-	-	-	-	-	SI007	Ciclev10005394m	scaffold_9	5549195	5553148	C_unshiu_00164:mRNA_5.1	C_unshiu_00164	17046	20923	Malate dehydrogenase	AGI-03	43.563
Af3822			-	-	-	-	-	-		Ciclev10004695m	scaffold_9	5494254	5497030	C_unshiu_00164:mRNA_13.1	C_unshiu_00164	74059	75936	Phosphate transporter	AGI-03	44.864
Af1307			-	-	-	-	-	-		Ciclev10005707m	scaffold_9	5310513	5314498
Tf0296			-	-	-	-	-	-		Ciclev10005872m	scaffold_9	5305586	5310022
Bf0183			O	-	-	-	-	-	SI308	Ciclev10005208m	scaffold_9	5254416	5256826	C_unshiu_01106:mRNA_9.1	C_unshiu_01106	77275	79234	Hypothetical protein
Al0622			-	-	-	-	-	-		Ciclev10006115m	scaffold_9	5152012	5155157
Wy0012			O	-	-	-	-	O		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor			KmG-032	11.250	JtR-031	4.898	NAT-03	11.970
Af1414			-	-	-	-	-	-		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor	AGI-03	50.895
Af1490			-	-	-	-	-	-		Ciclev10005113m	scaffold_9	4742709	4745030
Af1630			-	-	-	-	-	-		Ciclev10006127m	scaffold_9	4702402	4704790
Af1383			-	-	-	-	-	-		Ciclev10006002m	scaffold_9	4524401	4525971
Cp2060			-	-	-	-	-	-		Ciclev10005381m	scaffold_9	4503739	4508011
Af1244			-	-	-	-	-	-		Ciclev10006361m	scaffold_9	4448167	4450777
Fb0191			-	-	-	-	-	-		Ciclev10005974m	scaffold_9	4119936	4121030
Cp1177			-	-	-	-	-	-		Ciclev10006006m	scaffold_9	4116356	4117315
Bf0171			-	-	-	-	-	-	SI381	Ciclev10006006m	scaffold_9	4116356	4117315	C_unshiu_00101:mRNA_25.1	C_unshiu_00101	280469	282533	Early light-induced protein, chloroplastic	AGI-03	52.548
Af1451			-	-	-	-	-	-		Ciclev10005663m	scaffold_9	3961723	3964463
Al0333			-	-	-	-	-	-		Ciclev10004130m	scaffold_9	3954507	3961401
Af1547			-	-	-	-	-	-		Ciclev10005907m	scaffold_9	3864764	3867933
Fb0207			-	-	-	-	-	-		Ciclev10006449m	scaffold_9	3771162	3771725	C_unshiu_00254:mRNA_35.1	C_unshiu_00254	237120	239518	Heat shock 22 kDa protein									RP-03	21.444
Al0009			-	-	-	-	-	-		Ciclev10004753m	scaffold_9	3688973	3692790
Wy0001			-	-	-	-	-	-		Ciclev10004473m	scaffold_9	3564877	3568051
Fb1227			-	-	-	-	-	-		Ciclev10004375m	scaffold_9	3367718	3376062	C_unshiu_00051:mRNA_60.1	C_unshiu_00051	463042	471084	Chloride channel protein	AGI-03	19.631
Lp0202			O	-	-	-	-	-		Ciclev10006509m	scaffold_9	3131006	3134438	C_unshiu_00051:mRNA_31.2	C_unshiu_00051	239802	243699	NEDD8-activating enzyme E1 catalytic subunit	AGI-03	23.085
Cp1925		AAvailable marker	-	-	-	-	O	O		Ciclev10005182m	scaffold_9	3115971	3120271	C_unshiu_00051:mRNA_29.1	C_unshiu_00051	224928	229203	YjeF family domain-containing protein	AGI-03	24.457
Cp1924			-	-	-	-	-	-		Ciclev10005766m	scaffold_9	3112679	3115796
Af1027			O	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297
Cp1923		OOthers	-	-	-	-	-	-		Ciclev10005293m	scaffold_9	2946301	2950297	C_unshiu_00097:mRNA_22.1	C_unshiu_00097	195825	199499	UPF0613 protein PB24D3.06c	AGI-03	22.454
Al0415		AAvailable marker	-	-	-	-	O	O	SI120,SI310	Ciclev10004660m	scaffold_9	2732900	2738896	C_unshiu_00040:mRNA_76.1	C_unshiu_00040	632823	638463	Mitogen-activated protein kinase 14	AGI-03	24.885	KmG-031				NAT-03	41.576
Af1415			-	-	-	-	-	-		Ciclev10005717m	scaffold_9	2603134	2605405	C_unshiu_00366:mRNA_20.1	C_unshiu_00366	130993	132913	Transmembrane BAX inhibitor motif-containing protein 4	AGI-03	16.667
Lg2003			-	-	-	-	-	-		Ciclev10005717m	scaffold_9	2603134	2605405
Af1008			-	-	-	-	-	-		Ciclev10006973m	scaffold_9	2470085	2471703
Af0012			-	-	-	-	-	-		Ciclev10006108m	scaffold_9	2458793	2459573
Af0005			-	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181
Al0419		OOthers	O	-	-	-	-	-		Ciclev10005894m	scaffold_9	2452853	2455181	C_unshiu_00394:mRNA_25.1	C_unshiu_00394	150531	152208	Hypothetical protein	AGI-03	17.378	KmG-09	9.593	JtR-09S	7.976
Af1131			-	-	-	-	-	-		Ciclev10006197m	scaffold_9	2362829	2365557
Fb0827			O	-	-	-	-	-	SI215,SI301	Ciclev10004432m	scaffold_9	2353442	2357780	C_unshiu_00394:mRNA_9.1	C_unshiu_00394	41719	45690	Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase	AGI-03	19.017	KmG-031	16.544	JtR-034
Ov0415			-	-	-	-	-	-		Ciclev10007121m	scaffold_9	2339077	2341173
Cp1031		AAvailable marker	-	O	-	-	O	O		Ciclev10005224m	scaffold_9	2324313	2328666	C_unshiu_00394:mRNA_4.1	C_unshiu_00394	11970	16480	Putative E3 ubiquitin-protein ligase MARCH10	AGI-03	18.610
Tf0169			-	-	-	-	-	-		Ciclev10004115m	scaffold_9	2284484	2302268
Al0619			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313	C_unshiu_00311:mRNA_12.1	C_unshiu_00311	55933	60057	TLP domain class transcription factor	AGI-01	57.863	KmG-01	39.698
Tf0111			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Tf0425			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Af1559			-	-	-	-	-	-		Ciclev10005333m	scaffold_9	2211862	2215512
Af1177			-	-	-	-	-	-		Ciclev10005989m	scaffold_9	2168387	2170546	C_unshiu_00085:mRNA_13.1	C_unshiu_00085	78341	80308	CASP-like protein 1E1	AGI-03	18.579
Af1298			-	-	-	-	-	-		Ciclev10005845m	scaffold_9	2037273	2040825
Af1054			-	-	-	-	-	-		Ciclev10005132m	scaffold_9	2033331	2036879
Af1672			-	-	-	-	-	-		Ciclev10004406m	scaffold_9	1933927	1940744
Fb1430	Fb1430.lg		O	-	-	-	-	-		Ciclev10005994m	scaffold_9	1879675	1880523	C_unshiu_00102:mRNA_3.1	C_unshiu_00102	16507	17334	60S ribosome subunit biogenesis protein NIP7 homolog	AGI-03
Af1169			-	-	-	-	-	-		Ciclev10006148m	scaffold_9	1844420	1846037
Af1132			-	-	-	-	-	-		Ciclev10005061m	scaffold_9	1836250	1840208
Fb0331			-	-	-	-	-	-		Ciclev10004211m	scaffold_9	1799556	1809946
Af1069			-	-	-	-	-	-		Ciclev10005528m	scaffold_9	1787121	1788837
Mf0047		DDominant marker	-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081	C_unshiu_00036:mRNA_24.2	C_unshiu_00036	126753	128428	Late embryogenesis abundant protein Lea5-D	AGI-03	14.323	KmG-031	7.139			NAT-03	50.708
Lp0001			-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081
Af1248			-	-	-	-	-	-		Ciclev10007063m	scaffold_9	1638770	1641073
Al0234		OOthers	-	-	-	-	-	-		Ciclev10005909m	scaffold_9	1372972	1374927	C_unshiu_00369:mRNA_20.1	C_unshiu_00369	74034	74546	Ribosomal protein L19			KmG-031	6.974			NAT-03	47.094	RP-03	3.219
Cp1523		AAvailable marker	-	-	-	-	O	O		Ciclev10005519m	scaffold_9	1356758	1359310	C_unshiu_01431:mRNA_7.1	C_unshiu_01431	31518	37086	Hypothetical protein	AGI-03	12.606
Fb0146			-	-	-	-	-	-		Ciclev10005519m	scaffold_9	1356758	1359310
Tf0276			-	-	-	-	-	-		Ciclev10004999m	scaffold_9	1169260	1172055
Fb0231			-	-	-	-	-	-		Ciclev10004999m	scaffold_9	1169260	1172055	C_unshiu_00007:mRNA_2.1	C_unshiu_00007	6589	14596	Two-component response regulator ARR12-like protein									RP-03	1.143
Tf0437			-	-	-	-	-	-		Ciclev10004471m	scaffold_9	1148083	1152025
Tf0106			-	-	-	-	-	-		Ciclev10006161m	scaffold_9	1128046	1129318	C_unshiu_00007:mRNA_6.1	C_unshiu_00007	49599	50702	GATA transcription factor 15	AGI-03	7.674
Cp1113			-	-	-	-	-	-		Ciclev10004638m	scaffold_9	987368	992630
Tf0275		AAvailable marker	O	-	-	-	O	O		Ciclev10006256m	scaffold_9	955176	957425	C_unshiu_00249:mRNA_31.1	C_unshiu_00249	191274	194861	Transposon protein, putative, Mutator sub-class	AGI-03	11.501
Af1632			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Mf0027	Mf0026.2		-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Al0038			-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Af1534			-	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Lp0218			O	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Cp1114			-	-	-	-	-	-		Ciclev10004644m	scaffold_9	870926	875408
Cp1115			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Su0008			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Gmom26			-	-	-	-	-	-		Ciclev10005911m	scaffold_9	713868	716708	C_unshiu_00007:mRNA_76.1	C_unshiu_00007	473625	476336	Prefoldin subunit 3	AGI-03	10.918
Af1316			-	-	-	-	-	-		Ciclev10006289m	scaffold_9	685220	687072
Af1691			-	-	-	-	-	-		Ciclev10006090m	scaffold_9	627373	629617
Af1358			-	-	-	-	-	-		Ciclev10004514m	scaffold_9	566506	571956
Cp1951			-	-	-	-	-	-		Ciclev10004474m	scaffold_9	543444	546746
Cp0996		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI340	Ciclev10004474m	scaffold_9	543444	546746	C_unshiu_00007:mRNA_105.1	C_unshiu_00007	630727	633783	Neutral/alkaline invertase	AGI-03	9.366
Af1540			-	-	-	-	-	-		Ciclev10006242m	scaffold_9	477388	478920
Bf0005			-	-	-	-	-	-	SI194	Ciclev10005100m	scaffold_9	465444	468143	C_unshiu_00007:mRNA_115.1	C_unshiu_00007	710354	712926	Phosphatase 2C family protein	AGI-03	8.177
Af1183			-	-	-	-	-	-		Ciclev10005344m	scaffold_9	280915	283060
Tf0140			-	-	-	-	-	-		Ciclev10004457m	scaffold_9	225971	232459	C_unshiu_00007:mRNA_144.1	C_unshiu_00007	929895	935477	Squamosa promoter-binding-like protein 1	AGI-03	9.830
Af1019			-	-	-	-	-	-		Ciclev10005635m	scaffold_9	192512	196670
Af1579			-	-	-	-	-	-		Ciclev10006023m	scaffold_9	75348	78181
Cp0113			-	-	-	-	-	-		Ciclev10028057m	scaffold_8	25022548	25027972
Tf0346			-	-	-	-	-	-		Ciclev10028485m	scaffold_8	24987539	24993295
Tf0014.2			-	-	-	-	-	-		Ciclev10030185m	scaffold_8	24976315	24979483	C_unshiu_00271:mRNA_9.1	C_unshiu_00271	56325	61820	Transcription factor	AGI-08
Bf0219			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Cp0739			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Af1423			-	-	-	-	-	-		Ciclev10028376m	scaffold_8	24832653	24835113
Mf0079		AAvailable marker	O	-	-	-	O	O	SI067	Ciclev10028839m	scaffold_8	24721937	24724569	C_unshiu_00984:mRNA_8.1	C_unshiu_00984	55676	58212	Cinnamoyl CoA reductase	AGI-08	3.409	KmG-08				NAT-082
Al0252			-	-	-	-	-	-		Ciclev10028251m	scaffold_8	24689989	24692884
Cp2188		AAvailable marker	-	-	-	-	O	O		Ciclev10028997m	scaffold_8	24666729	24669708	C_unshiu_00021:mRNA_116.1	C_unshiu_00021	778469	782836	Phytol kinase	AGI-08	2.186
Ov0524			-	-	-	-	-	-		Ciclev10027930m	scaffold_8	24613597	24623540
Af1258			-	-	-	-	-	-		Ciclev10029223m	scaffold_8	24591409	24594117
Al0308			-	-	-	-	-	-	SI045	Ciclev10028262m	scaffold_8	24521116	24524868	C_unshiu_00021:mRNA_97.1	C_unshiu_00021	630527	634212	NAD(P)H dehydrogenase B2	AGI-05	56.788
Af1555			-	-	-	-	-	-		Ciclev10029189m	scaffold_8	24502070	24504031
Al0303			-	-	-	-	-	-		Ciclev10029291m	scaffold_8	24431064	24433341
Cp2190		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028681m	scaffold_8	24416582	24418982	C_unshiu_00021:mRNA_82.1	C_unshiu_00021	526890	529253	Kinase PfkB	AGI-08	13.780
Af1290			-	-	-	-	-	-		Ciclev10029472m	scaffold_8	24413157	24415621
Fb2130			-	-	-	-	-	-	SI069,SI117	Ciclev10030030m	scaffold_8	24341129	24344795	C_unshiu_00021:mRNA_68.1	C_unshiu_00021	452003	461315	Hypothetical protein	AGI-08	11.809	KmG-08	11.813
Lp0119		AAvailable marker	-	-	-	-	O	O	SI276	Ciclev10028631m	scaffold_8	24315720	24317671	C_unshiu_00021:mRNA_65.1	C_unshiu_00021	426040	431920	Hypothetical protein	AGI-08	8.544
Tf0229			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0408			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Af1252			-	-	-	-	-	-		Ciclev10027813m	scaffold_8	24202384	24209439
Af1154			-	-	-	-	-	-		Ciclev10029070m	scaffold_8	24143988	24146294
Af1204			-	-	-	-	-	-		Ciclev10029631m	scaffold_8	24097206	24099101
Al0610			-	-	-	-	-	-		Ciclev10028696m	scaffold_8	23885103	23890220
Tf0223			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0399			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0429			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Cp2194			-	-	-	-	-	-		Ciclev10028458m	scaffold_8	23768052	23771625
Fb0202			O	-	-	-	-	-		Ciclev10027835m	scaffold_8	23736197	23740543
Af1591			-	-	-	-	-	-		Ciclev10030412m	scaffold_8	23674833	23676979
Tf0204			-	-	-	-	-	-		Ciclev10027848m	scaffold_8	23589702	23593390
If0012			-	-	-	-	-	-		Ciclev10027933m	scaffold_8	23574080	23579813
Ov0424			-	-	-	-	-	-		Ciclev10029115m	scaffold_8	23480483	23484398
Af1193			-	-	-	-	-	-		Ciclev10028241m	scaffold_8	23456630	23459052
Fb0159		AAvailable marker	O	-	-	-	O	O	SI227	Ciclev10028241m	scaffold_8	23456630	23459052	C_unshiu_00375:mRNA_4.1	C_unshiu_00375	27952	30443	O-Glycosyl hydrolases family 17 protein	AGI-08	13.499	KmG-08	9.978					RP-08	2.327
Lp0201			-	-	-	-	-	-		Ciclev10028459m	scaffold_8	23365481	23369843
Af1468			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019
Cp0719			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019	C_unshiu_02393:mRNA_2.1	C_unshiu_02393	18637	23537	Inner membrane protein ALBINO3	AGI-08	12.793
Tf0442			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0312			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Cp2198			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Al0521			-	-	-	-	-	-		Ciclev10029787m	scaffold_8	23136753	23137537
Af1208			-	-	-	-	-	-		Ciclev10029134m	scaffold_8	23036291	23037524	C_unshiu_02220:mRNA_1.1	C_unshiu_02220	11982	13216	Tonoplast intrinsic protein	AGI-08	17.057
Bf0145			O	-	-	O	-	-	SI272,SI327,SI368	Ciclev10027909m	scaffold_8	22730839	22737522	C_unshiu_00158:mRNA_13.1	C_unshiu_00158	102548	109253	Pseudo-response regulator 37	AGI-08	20.703							RP-08	5.775
Ov0324		AAvailable marker	-	-	-	-	-	O		Ciclev10030198m	scaffold_8	22575845	22578398	C_unshiu_01619:mRNA_6.1	C_unshiu_01619	15139	24519	Hypothetical protein			KmG-08	23.615
Cp0822			-	-	-	-	-	-		Ciclev10028025m	scaffold_8	22475922	22481806
Af1169b			-	-	-	-	-	-		Ciclev10029381m	scaffold_8	22375153	22376849
Al0416		OOthers	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00639:mRNA_12.1	C_unshiu_00639	90698	99467	Elongation factor 1-alpha	AGI-08	23.023			JtR-07	60.405	NAT-082	21.126
Ov0018		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00082:mRNA_34.1	C_unshiu_00082	267163	269630	Elongation factor 1-alpha
Lp0031			-	-	-	-	-	-		Ciclev10027944m	scaffold_8	22261408	22266208	C_unshiu_00639:mRNA_5.1	C_unshiu_00639	45321	49901	N-terminal isoform 1	AGI-08	9.183
Tf0345			-	-	-	-	-	-	SI011	Ciclev10027918m	scaffold_8	22248129	22254029	C_unshiu_00639:mRNA_3.1	C_unshiu_00639	31842	37665	Auxin response factor
Tf0412			-	-	-	-	-	-		Ciclev10028306m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0150		AAvailable marker	O	O	-	O	O	O	SI262	Ciclev10028292m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0241		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10027798m	scaffold_8	22106872	22114471	C_unshiu_00481:mRNA_18.1	C_unshiu_00481	121975	128680	Zinc finger CCCH domain-containing protein 24	AGI-08	27.618
Af1572			-	-	-	-	-	-		Ciclev10027884m	scaffold_8	22084232	22091205
Gn0043		MDisagree by Marco analysis	-	-	-	O	-	-	SI323	Ciclev10027790m	scaffold_8	21953129	21960709	C_unshiu_02574:mRNA_1.1	C_unshiu_02574		2470	Class III homeodomain leucine zipper protein	AGI-08	30.721	KmG-08	27.458
Af1518			-	-	-	-	-	-		Ciclev10029379m	scaffold_8	21919215	21923184
Tf0029			-	-	-	-	-	-		Ciclev10027901m	scaffold_8	21887372	21893128	C_unshiu_00500:mRNA_16.1	C_unshiu_00500	147319	151840	Auxin response factor	AGI-08	27.318
Bf0411		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028317m	scaffold_8	21869065	21874083	C_unshiu_00500:mRNA_13.1	C_unshiu_00500	128482	133656	Sulfotransferase
Af1491b			-	-	-	-	-	-		Ciclev10029091m	scaffold_8	21777981	21780912
Lp0127			-	-	-	-	-	-		Ciclev10029357m	scaffold_8	21374019	21379609
Tf0096			O	-	-	-	-	-		Ciclev10028804m	scaffold_8	21369373	21370728	C_unshiu_00784:mRNA_1.1	C_unshiu_00784	297	1652	Transcription factor RAX3	AGI-08	34.042
Af1354			-	-	-	-	-	-		Ciclev10029831m	scaffold_8	21348947	21352692
Lp0042			-	-	-	-	-	-		Ciclev10028234m	scaffold_8	21342050	21345004
Bf0180			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Cp1254			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Vt0014			-	-	-	-	-	-		Ciclev10029694m	scaffold_8	21102979	21105476
Tf0200			O	-	-	-	-	-		Ciclev10030297m	scaffold_8	21095569	21102194
Af1515			-	-	-	-	-	-		Ciclev10027760m	scaffold_8	20838053	20844872	C_unshiu_00883:mRNA_4.1	C_unshiu_00883	60978	104832	Argonaute 1	AGI-08	40.438
Af1469			-	-	-	-	-	-		Ciclev10028130m	scaffold_8	20779069	20782853
Lp0016			-	-	-	-	-	-		Ciclev10028621m	scaffold_8	20607774	20611605
Af2786			-	-	-	-	-	-		Ciclev10029628m	scaffold_8	20547180	20549390
Al0324		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029315m	scaffold_8	20424287	20425903	C_unshiu_00320:mRNA_1.2	C_unshiu_00320	12758	14314	Hypothetical protein	AGI-08	41.127					NAT-082	31.019	RP-08	17.081
Af1281			-	-	-	-	-	-		Ciclev10029683m	scaffold_8	20366637	20367616
Ks9014			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
Cp0709			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
Ov0121		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase							NAT-081
Ov0125		AAvailable marker	-	-	-	-	O	O		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase	AGI-08	41.398
Af1261			-	-	-	-	-	-		Ciclev10027978m	scaffold_8	20321003	20329872
Cp0705			-	-	-	-	-	-		Ciclev10029127m	scaffold_8	20079720	20084101
Al0248			-	-	-	-	-	-		Ciclev10028483m	scaffold_8	19779795	19784134
Af1305			-	-	-	-	-	-		Ciclev10029439m	scaffold_8	19760077	19761961
Al0411		AAvailable marker	O	-	-	-	O	O		Ciclev10029439m	scaffold_8	19760077	19761961	C_unshiu_00011:mRNA_19.2	C_unshiu_00011	188649	189649	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-08	40.857
Mf0024	Mf0023.2		-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348
Cp0703			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin	AGI-08	43.089
Al0018			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin									RP-08	23.447
Al0256			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Af1501			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Lp0018			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Lp0116		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028879m	scaffold_8	19397294	19398741	C_unshiu_02034:mRNA_3.1	C_unshiu_02034	7573	8901	DUF3049 family protein					JtR-08	18.207	NAT-05	47.659
Tf0129			-	-	-	-	-	-		Ciclev10029032m	scaffold_8	19288177	19290093
Af1650			-	-	-	-	-	-		Ciclev10029248m	scaffold_8	19272551	19276355
Gn0060.2		OOthers	O	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508
Gn0100			-	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508	C_unshiu_00814:mRNA_2.1	C_unshiu_00814	13987	15768	Putative lycopene beta cyclase	AGI-08	44.669
Wy0039		AAvailable marker	-	-	-	-	O	O		Ciclev10028965m	scaffold_8	18824262	18825514	C_unshiu_00459:mRNA_4.1	C_unshiu_00459	34475	34918	Hypothetical protein	AGI-08	45.276			JtR-08	16.276
Af1454			-	-	-	-	-	-		Ciclev10029330m	scaffold_8	18813106	18814838
Af1487			-	-	-	-	-	-		Ciclev10028531m	scaffold_8	18155481	18157658	C_unshiu_00251:mRNA_22.1	C_unshiu_00251	205180	207288	DnaJ	AGI-08	47.330
Wy0019			-	-	-	-	-	-	SI031	Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2
Tf0290		AAvailable marker	O	-	-	-	O	O		Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2	AGI-08	57.802
Cp0696			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Af1200			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Tf0440			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Ov0413			-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like			KmG-07	34.263
Lp0115			-	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065
Ov0414	Ov0413.2		-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065
Al0632		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like	AGI-08	56.724			JtR-08	18.952
Ov0008			-	-	-	-	-	-		Ciclev10028019m	scaffold_8	17659925	17664551
Af1575			-	-	-	-	-	-		Ciclev10029551m	scaffold_8	17524835	17526697	C_unshiu_02252:mRNA_4.1	C_unshiu_02252	7997	9032	Photosystem II reaction center W protein	AGI-08	56.724
Af1486			-	-	-	-	-	-		Ciclev10029576m	scaffold_8	17510926	17513265	C_unshiu_00962:mRNA_1.1	C_unshiu_00962	434	2684	Prefoldin subunit 4	AGI-08	59.562
Cp0103			-	-	-	-	-	-		Ciclev10029116m	scaffold_8	16045535	16047020
Tf0013		OOthers	O	O	O	-	O	O	SI161,SI362	Ciclev10027769m	scaffold_8	13408610	13413938	C_unshiu_01226:mRNA_1.1	C_unshiu_01226	20559	25720	DNA replication licensing factor MCM2	AGI-08	56.123
Cp2237		AAvailable marker	-	-	-	-	O	O		Ciclev10028314m	scaffold_8	13190041	13194829	C_unshiu_01736:mRNA_2.1	C_unshiu_01736	18986	23543	Riboflavin biosynthesis protein ribBA, chloroplastic	AGI-08	55.965
Wy0015			O	-	-	-	-	-	SI041	Ciclev10028465m	scaffold_8	13101257	13103161	C_unshiu_02878:mRNA_1.1	C_unshiu_02878	9199	10715	UDP-glycosyltransferase 73C5	AGI-08	56.724
Af1275			-	-	-	-	-	-		Ciclev10028274m	scaffold_8	13035174	13037307
Af1117			-	-	-	-	-	-		Ciclev10028909m	scaffold_8	12563102	12564623
Gn0058			-	-	-	-	-	-		Ciclev10029531m	scaffold_8	11297754	11299510	C_unshiu_00424:mRNA_23.1	C_unshiu_00424	213541	217268	Hypothetical protein	AGI-08	59.107
Af1352			-	-	-	-	-	-		Ciclev10029282m	scaffold_8	11113259	11117344
Tf0444			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797
Tf0336			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797	C_unshiu_02599:mRNA_1.1	C_unshiu_02599	10362	14310	NAD(P)-linked oxidoreductase superfamily protein	AGI-08	54.304
Af1110			-	-	-	-	-	-		Ciclev10028599m	scaffold_8	9656865	9660001	C_unshiu_01425:mRNA_1.1	C_unshiu_01425	333	5522	N-carbamoylputrescine amidase	AGI-08	56.690
Wy0042	Wy0042.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326
Wy0045	Wy0045.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326	C_unshiu_02764:mRNA_1.1	C_unshiu_02764	1529	2654	Geraniol 10-hydroxylase-like protein	AGI-08	56.724
Bf0179			-	-	-	-	-	-		Ciclev10028278m	scaffold_8	9383280	9385123
Fb0221			-	-	-	-	-	-		Ciclev10029932m	scaffold_8	8756442	8760308
Ov0314		AAvailable marker	O	-	-	-	O	O	SI107	Ciclev10029386m	scaffold_8	8176371	8177435	C_unshiu_00728:mRNA_1.1	C_unshiu_00728	4070	4922	Mannan polymerase complex subunit mnn9	AGI-08	56.724	KmG-08	58.356	JtR-08	21.829			RP-08	41.217
Vt0003			-	-	-	-	-	-		Ciclev10027667m	scaffold_8	8153660	8174407	C_unshiu_00616:mRNA_3.1	C_unshiu_00616	10808	18470	Hypothetical protein	AGI-08	56.724
Al0240		AAvailable marker	-	-	-	-	O	O		Ciclev10028497m	scaffold_8	8033465	8038415	C_unshiu_00682:mRNA_9.1	C_unshiu_00682	59786	63447	Hypothetical protein	AGI-08	53.867
Tf0144			-	-	-	-	-	-	SI125,SI189,SI192	Ciclev10028782m	scaffold_8	8009000	8012045	C_unshiu_00682:mRNA_12.1	C_unshiu_00682	86334	89311	Transcription factor bHLH121	AGI-08	56.439
Af1398			-	-	-	-	-	-		Ciclev10030393m	scaffold_8	7899376	7902959	C_unshiu_00887:mRNA_6.1	C_unshiu_00887	49120	57547	Hypothetical protein	AGI-08	57.551
Af1402			-	-	-	-	-	-		Ciclev10029042m	scaffold_8	7891925	7895996
Af1156			-	-	-	-	-	-		Ciclev10028887m	scaffold_8	6901630	6904625
Fb0321		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10027873m	scaffold_8	6834487	6837762	C_unshiu_00918:mRNA_1.1	C_unshiu_00918	5010	7626	Arginine decarboxylase 1	AGI-08	56.405			JtR-08	25.280
Af1588			-	-	-	-	-	-		Ciclev10028841m	scaffold_8	6750503	6754741
Tf0325		OOthers	O	-	-	-	-	-		Ciclev10029355m	scaffold_8	6700441	6703748	C_unshiu_02974:mRNA_2.1	C_unshiu_02974	10142	13418	B-box type zinc finger family protein	AGI-08	57.386
Lp0038			-	-	-	-	-	-		Ciclev10029808m	scaffold_8	6686602	6688894
Tf0155			-	-	-	-	-	-		Ciclev10028860m	scaffold_8	6474195	6475882
Gn0086.9		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029066m	scaffold_8	6317205	6322458
Bf0115			O	-	-	-	-	-	SI054,SI295	Ciclev10029066m	scaffold_8	6317205	6322458	C_unshiu_00484:mRNA_11.3	C_unshiu_00484	48216	54250	Squalene synthase	AGI-08	58.587					NAT-081	17.717
Af1089			-	-	-	-	-	-		Ciclev10028589m	scaffold_8	6068944	6075685
Tf0445			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0355			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0228			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497
Tf0405			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497	C_unshiu_00220:mRNA_2.1	C_unshiu_00220	48148	53214	BEL1-like homeodomain protein 6	AGI-08	61.643
Tf0246			-	-	-	-	-	-		Ciclev10029834m	scaffold_8	5718913	5719431
Al0021			-	-	-	-	-	-		Ciclev10028327m	scaffold_8	5692075	5697304
Cp0655			-	-	-	-	-	-		Ciclev10028195m	scaffold_8	5496424	5502056
Al0012			-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0013	Al0012.2		-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Lp0228			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Af1118			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Al0315			-	-	-	-	-	-		Ciclev10028656m	scaffold_8	4905341	4909930
Ov0520		OOthers	O	-	-	-	-	-		Ciclev10029053m	scaffold_8	4712393	4713689	C_unshiu_00438:mRNA_3.1	C_unshiu_00438	34343	35619	BURP domain-containing protein	AGI-08	33.144			JtR-08	26.748
Cp1694			-	-	-	-	-	-		Ciclev10028384m	scaffold_8	4292180	4295696
Tf0316			-	-	-	-	-	-		Ciclev10028732m	scaffold_8	3894266	3897671
Af1416			-	-	-	-	-	-		Ciclev10029140m	scaffold_8	3738607	3741747	C_unshiu_00589:mRNA_10.1	C_unshiu_00589	131180	134227	Embryo defective 1273, putative isoform 1	AGI-08	68.834
Af1386			-	-	-	-	-	-		Ciclev10028011m	scaffold_8	3117337	3120914
Af1362			-	-	-	-	-	-		Ciclev10027931m	scaffold_8	2888992	2895645	C_unshiu_00152:mRNA_9.1	C_unshiu_00152	72564	86513	Hypothetical protein	AGI-08	80.366
Lp0128			-	-	-	-	-	-		Ciclev10027734m	scaffold_8	2848884	2853210
Lp0226			O	-	-	-	-	-	SI210	Ciclev10027999m	scaffold_8	2831832	2837109	C_unshiu_00152:mRNA_19.1	C_unshiu_00152	138714	144356	Embryonic polyadenylate-binding protein	AGI-08	73.527
Af1023			-	-	-	-	-	-		Ciclev10028042m	scaffold_8	2719654	2725331
Tf0250		AAvailable marker	O	-	-	-	O	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A	AGI-08	73.105
Tf0431		AAvailable marker	O	-	-	-	-	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A
Al0515		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI178	Ciclev10030023m	scaffold_8	2673135	2674232	C_unshiu_00152:mRNA_38.1	C_unshiu_00152	273851	275034	DNA-damage-repair/toleration protein DRT100	AGI-08	73.663			JtR-08	14.154	NAT-081	10.596
Cp1144		OOthers	-	-	-	-	-	-		Ciclev10028086m	scaffold_8	2649991	2655756	C_unshiu_00152:mRNA_43.1	C_unshiu_00152	288550	294174	Sodium:hydrogen antiporter 1 isoform 1	AGI-08	70.995
Lg2001			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562
Lg2002			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562	C_unshiu_00152:mRNA_44.1	C_unshiu_00152	294607	297615	Phosphoglycerate dehydrogenase	AGI-08	69.974
Cp0605			-	-	-	-	-	-		Ciclev10029105m	scaffold_8	2627683	2630058
Lg2004			-	-	-	-	-	-		Ciclev10028785m	scaffold_8	2599717	2602090	C_unshiu_00152:mRNA_53.1	C_unshiu_00152	347645	349890	Cinnamyl alcohol dehydrogenase	AGI-08	76.045
Al0517		AAvailable marker	-	-	-	-	O	O		Ciclev10028293m	scaffold_8	2572439	2574295	C_unshiu_00363:mRNA_1.1	C_unshiu_00363	5892	7583	Limonoid glucosyltransferase	AGI-08	74.016			JtR-08	15.435
Gn0033		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605	C_unshiu_00363:mRNA_2.1	C_unshiu_00363	14663	16198	Limonoid UDP-glucosyltransferase-like protein	AGI-08	73.527	KmG-08	86.664			NAT-082	86.620
Gn0033.2			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Gn0033.3			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Fb0246			-	-	-	-	-	-		Ciclev10029680m	scaffold_8	2403492	2406922	C_unshiu_00363:mRNA_27.1	C_unshiu_00363	170901	174318	Hypothetical protein	AGI-08	80.078
Af1686			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Al0035			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Cp0603		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10028998m	scaffold_8	2349655	2354496	C_unshiu_00363:mRNA_34.1	C_unshiu_00363	217631	222409	Hop-interacting protein THI043	AGI-08	75.684
Al0247		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10029281m	scaffold_8	2227827	2230752	C_unshiu_00024:mRNA_15.1	C_unshiu_00024	104182	106823	Somatic embryogenesis receptor kinase 1	AGI-08	77.316	KmG-08	91.101			NAT-082	73.850
Cp0297			-	-	-	-	-	-		Ciclev10028989m	scaffold_8	2135445	2138606	C_unshiu_00024:mRNA_26.2	C_unshiu_00024	197656	201866	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-08	78.209
Tf0295			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782
Edw002			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782	C_unshiu_00024:mRNA_48.2	C_unshiu_00024	335678	337129	LIM transcription factor	AGI-08	77.720
Tf0308			-	-	-	-	-	-		Ciclev10028926m	scaffold_8	1993659	1996827
Af1409			-	-	-	-	-	-		Ciclev10028349m	scaffold_8	1878986	1885505
Gn0049			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311	C_unshiu_00024:mRNA_95.1	C_unshiu_00024	699386	701126	DUF1005 family protein	AGI-08	77.688			JtR-08	17.757
Cp0301			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311
Af1697			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Cp0601			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Af1373			-	-	-	-	-	-		Ciclev10028814m	scaffold_8	1400755	1404988
Af1113			-	-	-	-	-	-		Ciclev10028842m	scaffold_8	1376123	1378446
Af1140			-	-	-	-	-	-		Ciclev10029224m	scaffold_8	1336907	1339200
Tf0299			-	-	-	-	-	-		Ciclev10028534m	scaffold_8	1316879	1320611
Af1225			-	-	-	-	-	-		Ciclev10027859m	scaffold_8	1094366	1097096
Tf0047			-	-	-	-	-	-		Ciclev10028908m	scaffold_8	1063711	1065289
Tf0356			-	-	-	-	-	-	SI134,SI160	Ciclev10029063m	scaffold_8	998289	1001763	C_unshiu_00041:mRNA_95.3	C_unshiu_00041	588335	591780	Basic-leucine zipper (BZIP) transcription factor family	AGI-08	83.743
Af1425			-	-	-	-	-	-		Ciclev10028562m	scaffold_8	994687	998018
Cp1697		AAvailable marker	-	-	-	-	O	O		Ciclev10028645m	scaffold_8	966124	968846	C_unshiu_00041:mRNA_89.1	C_unshiu_00041	555334	558046	Urease accessory protein UreH	AGI-02	73.770
Wy0038			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Ov0025			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Al0219			-	-	-	-	-	-		Ciclev10028236m	scaffold_8	793820	798369
Fb1784			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936	C_unshiu_02466:mRNA_2.1	C_unshiu_02466	2597	4055	Class I chitinase									RP-05	52.311
Ov0108			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936
Af1098			-	-	-	-	-	-		Ciclev10028668m	scaffold_8	356241	360220
Al0205			-	-	-	-	-	-		Ciclev10028714m	scaffold_8	324145	327011
Af0017			-	-	-	-	-	-		Ciclev10029358m	scaffold_8	313112	317158
Cp0451			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806
Bf0019			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806	C_unshiu_00376:mRNA_8.1	C_unshiu_00376	72474	76027	Putative serine/threonine-protein kinase Cx32									RP-04
Af1191			-	-	-	-	-	-		Ciclev10028098m	scaffold_8	180851	185769
Tf0195		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10030351m	scaffold_8	67997	74191	C_unshiu_01137:mRNA_4.1	C_unshiu_01137	30837	36569	AT-rich interactive domain-containing protein 3	AGI-08	87.683
Af1507b			-	-	-	-	-	-		Ciclev10025301m	scaffold_7	21098230	21102921
Af1620			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Cp2247			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Lp0019		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709	C_unshiu_00622:mRNA_2.1	C_unshiu_00622	28630	30583	50S ribosomal protein L29, chloroplastic			KmG-02	4.377	JtR-02	-6.938
Fb0365			O	-	-	-	-	-	SI036,SI320	Ciclev10026391m	scaffold_7	20872462	20874659	C_unshiu_00098:mRNA_41.1	C_unshiu_00098	264947	272086	Hypothetical protein	AGI-02	31.596	KmG-02		JtR-02	-4.953
Af1233			-	-	-	-	-	-		Ciclev10025897m	scaffold_7	20841942	20846077
Af1126			-	-	-	-	-	-		Ciclev10026538m	scaffold_7	20656099	20658251
Ov0004			-	-	-	-	-	-		Ciclev10025545m	scaffold_7	20360086	20363290	C_unshiu_00650:mRNA_9.1	C_unshiu_00650	86670	89289	Myo-inositol-1 phosphate synthase			KmG-02	17.680			NAT-02S
Ov0522			-	-	-	-	-	-		Ciclev10026806m	scaffold_7	20056475	20058190
Af1210			-	-	-	-	-	-		Ciclev10026807m	scaffold_7	20056475	20058190
Af1043			-	-	-	-	-	-		Ciclev10026060m	scaffold_7	20049936	20052008	C_unshiu_00519:mRNA_19.1	C_unshiu_00519	110187	111261	Ribonucleoside-diphosphate reductase subunit M2	AGI-02	44.231
Vs0006		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10025343m	scaffold_7	19024295	19026021	C_unshiu_00468:mRNA_22.1	C_unshiu_00468	132124	133922	Cytochrome P450 78A4	AGI-02	27.491			JtR-02	50.216	NAT-02S	3.328
Lp0037		OOthers	-	-	-	-	-	-		Ciclev10025045m	scaffold_7	18963487	18968140
Af1264			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Cp0058			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Vt0032			O	-	-	-	-	-	SI024	Ciclev10024737m	scaffold_7	17901487	17905433	C_unshiu_00382:mRNA_15.1	C_unshiu_00382	163577	167662	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	AGI-02	25.601							RP-02	6.081
Af1584			-	-	-	-	-	-		Ciclev10026332m	scaffold_7	17424218	17426071
Af1472			-	-	-	-	-	-		Ciclev10026852m	scaffold_7	17420861	17422787
Af1235			-	-	-	-	-	-		Ciclev10026233m	scaffold_7	17212895	17215557
Cp1225			-	-	-	-	-	-		Ciclev10025660m	scaffold_7	17208075	17211871
Al0329		AAvailable marker	O	-	-	-	O	O	SI185	Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.162	KmG-02	11.218	JtR-02	7.174	NAT-02S	5.552	RP-02	8.191
Mf0090		AAvailable marker	-	O	-	-	O	O		Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.869	KmG-02	11.182	JtR-02	3.182			RP-02	8.191
Af1012			-	-	-	-	-	-		Ciclev10026672m	scaffold_7	16270394	16272027
Tf0125			-	-	-	-	-	-		Ciclev10025501m	scaffold_7	16249523	16255343	C_unshiu_01042:mRNA_11.1	C_unshiu_01042	86577	91963	Ubiquitin-specific protease family C19 protein	AGI-02	21.337
Cp1163			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Cp0318			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Al0239		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative
Af3023			-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative	AGI-02	21.337
Tf0454		AAvailable marker	O	-	-	-	O	O		Ciclev10027306m	scaffold_7	16108723	16113463	C_unshiu_00371:mRNA_10.1	C_unshiu_00371	121418	127245	GATA transcription factor	AGI-02	21.099
Tf0030.2			-	-	-	-	-	-		Ciclev10027306m	scaffold_7	16108723	16113463
Af1516			-	-	-	-	-	-		Ciclev10025736m	scaffold_7	15872236	15875783
Bf0406			-	-	-	-	-	-		Ciclev10026290m	scaffold_7	15773091	15776242
Af1207			-	-	-	-	-	-		Ciclev10025335m	scaffold_7	15605065	15607345	C_unshiu_00628:mRNA_20.1	C_unshiu_00628	144683	146646	Flavonoid 3'-monooxygenase	AGI-02	21.344
Af1083			-	-	-	-	-	-		Ciclev10025156m	scaffold_7	15505556	15510930
Wy0007			-	-	-	-	-	-		Ciclev10025280m	scaffold_7	15456948	15460803
Cp0114			-	-	-	-	-	-		Ciclev10027515m	scaffold_7	15446269	15449214	C_unshiu_01960:mRNA_1.1	C_unshiu_01960	1400	4642	DS12 from 2D-PAGE of leaf protein, putative	AGI-02	21.337
Lp0004		OOthers	-	-	-	-	-	-		Ciclev10026144m	scaffold_7	15376818	15378771	C_unshiu_00703:mRNA_1.1	C_unshiu_00703	2793	4693	C6HC-type zinc finger RING/U-box protein	AGI-02	20.292	KmG-02	15.368					RP-02	11.119
Tf0201			O	-	-	-	-	-	SI195	Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1
Gmom23			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1			KmG-02	20.942
Gmom24			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1	AGI-02	19.971
Cp0313			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0379			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0126			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0415			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Al0037			-	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0037.2	Al0037.k		O	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Tf0027			-	-	-	-	-	-	SI046	Ciclev10026602m	scaffold_7	13911684	13912447	C_unshiu_00792:mRNA_11.1	C_unshiu_00792	92331	93069	Ethylene-responsive transcription factor ERF003	AGI-07	38.916
Fb0281			-	-	-	-	-	-		Ciclev10026802m	scaffold_7	13781544	13786811
Af1308			-	-	-	-	-	-		Ciclev10025747m	scaffold_7	13625504	13630800
Af1271			-	-	-	-	-	-		Ciclev10025653m	scaffold_7	13323583	13328683
Tf0046.2			-	-	-	-	-	-		Ciclev10026046m	scaffold_7	13308593	13311348
Al0401		OOthers	O	-	-	-	-	-		Ciclev10025346m	scaffold_7	13180567	13191638	C_unshiu_01698:mRNA_6.1	C_unshiu_01698	39336	40206	Hypothetical protein			KmG-02	26.204	JtR-02	-6.043	NAT-02S	22.960
Af1149			-	-	-	-	-	-		Ciclev10025360m	scaffold_7	12985954	12989228	C_unshiu_02261:mRNA_2.1	C_unshiu_02261	19156	21966	Glycerol kinase	AGI-05	21.630
Cp1791		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10027428m	scaffold_7	11604464	11607028	C_unshiu_00582:mRNA_4.1	C_unshiu_00582	10067	11470	NBS-LRR type disease resistance protein	AGI-02	12.969
Af0011			-	-	-	-	-	-		Ciclev10025929m	scaffold_7	11357990	11362560
Vt0030	Vt0030.k		O	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014	C_unshiu_01240:mRNA_4.1	C_unshiu_01240	27655	32960	Phospholipase D	AGI-02	12.615
Ks9006			-	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014
Af1514			-	-	-	-	-	-		Ciclev10026347m	scaffold_7	11203967	11205525
Af1573			-	-	-	-	-	-		Ciclev10026597m	scaffold_7	11163359	11165487
Af1556			-	-	-	-	-	-		Ciclev10026643m	scaffold_7	11107041	11109191	C_unshiu_01501:mRNA_6.1	C_unshiu_01501	57291	59154	Lactoylglutathione lyase/glyoxalase I family protein	AGI-02	11.728
Cte999			-	-	-	-	-	-		Ciclev10024858m	scaffold_7	11027712	11030551
Af1100			-	-	-	-	-	-		Ciclev10026703m	scaffold_7	10853487	10855215	C_unshiu_00451:mRNA_17.1	C_unshiu_00451	120744	122474	Ran BP2/NZF zinc finger-like superfamily protein isoform 1	AGI-02	13.326
Cp0556			-	-	-	-	-	-		Ciclev10025170m	scaffold_7	10484413	10489121
Cp0100			O	-	-	-	-	-		Ciclev10024866m	scaffold_7	10471136	10474241	C_unshiu_00924:mRNA_4.1	C_unshiu_00924	50269	52902	Tetratricopeptide repeat-like superfamily protein	AGI-02	14.111
Tf0172			O	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176	C_unshiu_00496:mRNA_5.1	C_unshiu_00496	48069	50951	Auxin-induced protein IAA6	AGI-02	10.638
Tf0024.2			-	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176
Af0002			-	-	-	-	-	-		Ciclev10026803m	scaffold_7	9468245	9468907
Lp0144			-	-	-	-	-	-		Ciclev10027174m	scaffold_7	9452114	9461436
Af1524			-	-	-	-	-	-		Ciclev10025757m	scaffold_7	9325319	9327565
Cp0321		AAvailable marker	-	-	-	-	-	O		Ciclev10026722m	scaffold_7	8898626	8899984	C_unshiu_00221:mRNA_33.1	C_unshiu_00221	211111	214358	Hypothetical protein
Af1465			-	-	-	-	-	-		Ciclev10026722m	scaffold_7	8898626	8899984
Af1460			-	-	-	-	-	-		Ciclev10025995m	scaffold_7	8712253	8715371
Al0638		OOthers	O	-	-	-	-	-		Ciclev10027380m	scaffold_7	8662041	8665543	C_unshiu_00221:mRNA_2.1	C_unshiu_00221	6658	10157	VHS domain-containing protein			KmG-07	23.435	JtR-07	17.224	NAT-07	24.049
Cp1111		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10024860m	scaffold_7	8603450	8610239	C_unshiu_00290:mRNA_28.1	C_unshiu_00290	241335	248051	Cell division protein ftsH, putative isoform 1	AGI-02	5.054
Bf0142			O	-	-	-	-	-		Ciclev10024891m	scaffold_7	8508837	8516759	C_unshiu_00290:mRNA_16.1	C_unshiu_00290	151884	158772	Class III homeodomain leucine zipper protein	AGI-02	5.104
Af0004			O	-	-	-	-	-		Ciclev10025125m	scaffold_7	8447414	8453714	C_unshiu_00290:mRNA_10.1	C_unshiu_00290	83615	110154	Hypothetical protein	AGI-02	2.847
Tf0067		OOthers	O	-	-	-	-	-	SI033,SI187	Ciclev10025950m	scaffold_7	8438702	8442381	C_unshiu_00290:mRNA_9.1	C_unshiu_00290	74194	77624	Transcription factor	AGI-02	5.104
Af1228			-	-	-	-	-	-		Ciclev10026542m	scaffold_7	8317978	8319191
Al0520			-	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Mf0100			O	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Af1194			-	-	-	-	-	-		Ciclev10026223m	scaffold_7	8255046	8256442
Ov0015		OOthers	O	-	-	-	-	-	SI304	Ciclev10026223m	scaffold_7	8255046	8256442	C_unshiu_02827:mRNA_2.1	C_unshiu_02827	15986	17224	Stem 28 kDa glycoprotein	AGI-02	34.494	KmG-02	35.126	JtR-02	19.319
Fb1751			-	-	-	-	-	-	SI264	Ciclev10025011m	scaffold_7	7977527	7984425	C_unshiu_00121:mRNA_40.1	C_unshiu_00121	250743	257054	Protein STRUBBELIG-RECEPTOR FAMILY 8
Af1148			-	-	-	-	-	-		Ciclev10025238m	scaffold_7	7904865	7908319
Cp1081			-	-	-	-	-	-		Ciclev10024992m	scaffold_7	7826603	7829404
Tf0196			-	-	-	-	-	-		Ciclev10025815m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein	AGI-02	4.033
Al0620		OOthers	-	-	-	-	-	-		Ciclev10025816m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein			KmG-02	36.964	JtR-02	17.013
Al0410			-	-	-	-	-	-		Ciclev10026113m	scaffold_7	7739782	7742295
Af3016			-	-	-	-	-	-		Ciclev10025718m	scaffold_7	7346031	7350895
Af1651			-	-	-	-	-	-		Ciclev10026767m	scaffold_7	7313006	7315653
Edp001			-	-	-	-	-	-		Ciclev10026603m	scaffold_7	7147319	7149017
Tf0319			-	-	-	-	-	-	SI152	Ciclev10026319m	scaffold_7	6872666	6877291	C_unshiu_00166:mRNA_10.1	C_unshiu_00166	78780	83374	Putative PHD finger protein ALFIN-LIKE 4-like	AGI-02	44.258
Vt0025			-	-	-	-	-	-		Ciclev10025308m	scaffold_7	6764664	6770188
Tf0231			-	-	-	-	-	-		Ciclev10026262m	scaffold_7	6760311	6763833
Ks9007			-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382
Al0210		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382	C_unshiu_00166:mRNA_28.1	C_unshiu_00166	205256	208771	Eukaryotic initiation factor 4A-10			KmG-02	34.998	JtR-02	15.126
Af1292			-	-	-	-	-	-		Ciclev10026736m	scaffold_7	6677314	6680214
Af1674			-	-	-	-	-	-		Ciclev10025184m	scaffold_7	6639833	6644164
Fb0233			O	-	-	-	-	-	SI025,SI079,SI169	Ciclev10025557m	scaffold_7	6535522	6540965	C_unshiu_00437:mRNA_15.1	C_unshiu_00437	131524	136642	WD-40 repeat-containing protein MSI4	AGI-02	47.382
Al0337			-	-	-	-	-	-		Ciclev10025556m	scaffold_7	6437406	6440864
Af1325			-	-	-	-	-	-		Ciclev10026096m	scaffold_7	6287460	6289468
Af1121			-	-	-	-	-	-		Ciclev10025591m	scaffold_7	6127464	6131417
Af1061			O	-	-	-	-	-		Ciclev10024969m	scaffold_7	6080410	6084393
Gn0004			-	-	-	-	-	-		Ciclev10026028m	scaffold_7	6011523	6014015	C_unshiu_00696:mRNA_14.1	C_unshiu_00696	122646	125456	Flavonol synthase	AGI-02	49.699	KmG-02	38.471	JtR-02	15.126
Af3785			-	-	-	-	-	-		Ciclev10025208m	scaffold_7	5932664	5935568
Cp0066			O	-	-	-	-	-		Ciclev10027599m	scaffold_7	5801208	5803835
Af1435			-	-	-	-	-	-		Ciclev10026292m	scaffold_7	5747604	5748976
Cp0661			-	-	-	-	-	-		Ciclev10025609m	scaffold_7	5668379	5673913
Bf0197			-	-	-	-	-	-		Ciclev10025476m	scaffold_7	5654376	5658039
Cp1736			-	-	-	-	-	-		Ciclev10026179m	scaffold_7	5640058	5643125	C_unshiu_00761:mRNA_15.2	C_unshiu_00761	89991	92755	Protein CbbY	AGI-02	50.716
Lp0002			-	-	-	-	-	-		Ciclev10026427m	scaffold_7	5575623	5577458
Lp0108		AAvailable marker	-	-	-	-	-	O		Ciclev10026340m	scaffold_7	5554619	5556993	C_unshiu_00761:mRNA_5.1	C_unshiu_00761	18704	21072	40S ribosomal protein S6			KmG-02	41.508	JtR-02	18.351
Al0237			-	-	-	-	-	-		Ciclev10026739m	scaffold_7	5523075	5524475
Af1483			-	-	-	-	-	-		Ciclev10026740m	scaffold_7	5523075	5524475
Cp1738		AAvailable marker	-	-	-	-	-	O	SI237,SI296	Ciclev10025941m	scaffold_7	5388458	5389981	C_unshiu_00303:mRNA_12.1	C_unshiu_00303	100918	102276	Putative clathrin assembly protein
Al0212			O	-	-	-	-	-		Ciclev10026128m	scaffold_7	5258045	5259521	C_unshiu_00288:mRNA_19.1	C_unshiu_00288	142758	144183	Mitochondrial uncoupling protein 3			KmG-02	43.821	JtR-02	30.507			RP-08
Tf0260			-	-	-	-	-	-		Ciclev10026457m	scaffold_7	5173846	5179864
Tf0434			-	-	-	-	-	-		Ciclev10026455m	scaffold_7	5173846	5179562
Ov0406			-	-	-	-	-	-		Ciclev10025329m	scaffold_7	5159995	5165972
Al0409		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI201,SI252	Ciclev10024949m	scaffold_7	5042508	5046271	No					AGI-02	50.758	KmG-02	44.930	JtR-02	29.462	NAT-02S	90.742
Cp1723			-	-	-	-	-	-		Ciclev10025728m	scaffold_7	5035429	5038431
Al0232			-	-	-	-	-	-		Ciclev10026186m	scaffold_7	4997089	4999255
Cp1671			-	-	-	-	-	-		Ciclev10025512m	scaffold_7	4882520	4888243
Bf0408			-	-	-	-	-	-		Ciclev10024877m	scaffold_7	4843157	4848614
Af1291			-	-	-	-	-	-		Ciclev10026757m	scaffold_7	4779400	4780310
Vs0018			-	-	-	-	-	-		Ciclev10026149m	scaffold_7	4612887	4617115
Al0621		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10025875m	scaffold_7	4575503	4577125	C_unshiu_00656:mRNA_8.1	C_unshiu_00656	32940	34329	Hypothetical protein	AGI-02	60.566	KmG-02	47.196	JtR-02	28.472
Tf0025.2			-	-	-	-	-	-		Ciclev10026197m	scaffold_7	4513037	4514995
Al0512			-	-	-	-	-	-		Ciclev10026719m	scaffold_7	4280712	4281481
Af1601			-	-	-	-	-	-		Ciclev10026686m	scaffold_7	4214423	4217517
Al0404			-	-	-	-	-	-		Ciclev10025902m	scaffold_7	4015735	4020920
Af1532			-	-	-	-	-	-		Ciclev10026374m	scaffold_7	3988366	3989679
Lp0126		AAvailable marker	O	-	-	-	O	O		Ciclev10025164m	scaffold_7	3946818	3949964	C_unshiu_00801:mRNA_10.1	C_unshiu_00801	97228	100216	Phototropic-responsive NPH3 family protein	AGI-02	65.295	KmG-02	54.892	JtR-02	26.278			RP-02.2
Cp1719			-	-	-	-	-	-		Ciclev10025341m	scaffold_7	3940274	3943841
Af1030			-	-	-	-	-	-		Ciclev10026876m	scaffold_7	3930788	3932748
Af1066			-	-	-	-	-	-		Ciclev10024951m	scaffold_7	3887010	3890047
Mf0094		AAvailable marker	-	-	-	-	O	O		Ciclev10026594m	scaffold_7	3721375	3722616	C_unshiu_00169:mRNA_29.1	C_unshiu_00169	217948	219072	Maternal effect embryo arrest protein	AGI-02	67.666	KmG-02	52.124	JtR-02	25.334
Lp0040		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor			KmG-02	52.181	JtR-02	25.334
Tf0259		AAvailable marker	O	-	-	-	O	O		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-02	67.666
Bf0205			O	-	-	-	-	-	SI236	Ciclev10025925m	scaffold_7	3541924	3543863	C_unshiu_00301:mRNA_11.1	C_unshiu_00301	55570	57462	WRKY
Tf0116			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0427			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Af1585			-	-	-	-	-	-		Ciclev10026687m	scaffold_7	3462353	3463444
Cp1688			-	-	-	-	-	-		Ciclev10026380m	scaffold_7	3456105	3460607
Af1379			-	-	-	-	-	-		Ciclev10026357m	scaffold_7	3456105	3460607	C_unshiu_00301:mRNA_21.2	C_unshiu_00301	134429	138770	CBS domain-containing protein CBSX1, chloroplastic	AGI-02	68.467
Tf0280			-	-	-	-	-	-	SI158,SI200	Ciclev10025566m	scaffold_7	3429964	3433239	C_unshiu_00301:mRNA_24.3	C_unshiu_00301	159835	163045	Floral homeotic protein APETALA 2	AGI-05	54.268
Tf0132			-	-	-	-	-	-		Ciclev10026056m	scaffold_7	3429964	3433239
Tf0120			-	-	-	-	-	-		Ciclev10024826m	scaffold_7	3376826	3385936
Bf0128			O	-	-	-	-	-		Ciclev10025298m	scaffold_7	3323269	3331038	C_unshiu_00051:mRNA_2.2	C_unshiu_00051	25872	40163	Hypothetical protein	AGI-02	70.082					NAT-02S	77.157	RP-02.2	9.835
Bf0204			-	-	-	-	-	-	SI326	Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic									RP-02.2	9.835
Gn0068			-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic	AGI-02	68.446							RP-02.2	9.814
Gn0068.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic
Gn0068.3	Gn0068.y	OOthers	-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894
Bf0405			-	-	-	-	-	-		Ciclev10024721m	scaffold_7	2994525	3001770
Fb0227			-	-	-	-	-	-		Ciclev10026002m	scaffold_7	2938059	2940407	C_unshiu_00084:mRNA_42.1	C_unshiu_00084	428180	435326	Phospholipase, patatin family	AGI-02	70.082							RP-02.2	12.696
Cp1715			-	-	-	-	-	-		Ciclev10025487m	scaffold_7	2713510	2717859
Af1694			-	-	-	-	-	-		Ciclev10025863m	scaffold_7	2703580	2705194
Af1544			-	-	-	-	-	-		Ciclev10026596m	scaffold_7	2622969	2624754
Cp1716		AAvailable marker	-	-	-	-	O	O		Ciclev10026303m	scaffold_7	2607670	2609433	C_unshiu_00025:mRNA_77.1	C_unshiu_00025	553145	554831	Thiol disulfide interchange protein	AGI-02	70.068
Fb0279			-	-	-	-	-	-		Ciclev10026511m	scaffold_7	2590903	2593347
Cp2263		AAvailable marker	-	-	-	-	O	O		Ciclev10026034m	scaffold_7	2586384	2588513	C_unshiu_00025:mRNA_69.1	C_unshiu_00025	530588	532071	Hypothetical protein	AGI-02	70.082
Tf0326		AAvailable marker	O	O	-	O	O	O	SI085	Ciclev10024695m	scaffold_7	2501520	2509737	C_unshiu_02417:mRNA_1.1	C_unshiu_02417	3692	11684	Histone-lysine N-methyltransferase SUVR5	AGI-02	69.928
Vt0015			-	-	-	-	-	-		Ciclev10025952m	scaffold_7	2441452	2443391	C_unshiu_00025:mRNA_49.1	C_unshiu_00025	381829	383760	Hexosyltransferase	AGI-02	70.082	KmG-02	67.054	JtR-02	21.082
Af1016			-	-	-	-	-	-		Ciclev10025840m	scaffold_7	2394471	2397293
Cp1085			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658	C_unshiu_00025:mRNA_42.1	C_unshiu_00025	337060	338142	Putative geranylgeranyl pyrophosphate synthase 3-like	AGI-02	70.082
Cp1086			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Af1463			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Wy0034			-	-	-	-	-	-	SI367	Ciclev10026310m	scaffold_7	2299638	2302863	C_unshiu_00025:mRNA_32.1	C_unshiu_00025	269762	270443	Flavoprotein wrbA
Tf0020			-	-	-	-	-	-	SI154	Ciclev10026414m	scaffold_7	2289455	2291216	C_unshiu_00025:mRNA_31.1	C_unshiu_00025	258446	260200	Homeobox leucine zipper protein	AGI-02	71.294
Tf0269			-	-	-	-	-	-		Ciclev10025970m	scaffold_7	2274068	2279911
Cp1292			-	-	-	-	-	-		Ciclev10025390m	scaffold_7	2246732	2249558
Tf0357			-	-	-	-	-	-	SI018	Ciclev10025390m	scaffold_7	2246732	2249558	C_unshiu_01055:mRNA_7.1	C_unshiu_01055	60614	63050	Zinc finger protein JACKDAW	AGI-02	71.294
Tf0358			-	-	-	-	-	-	SI098	Ciclev10025169m	scaffold_7	2049068	2051708	No
Cp2262		AAvailable marker	-	-	-	-	-	O		Ciclev10026121m	scaffold_7	1870933	1874304	C_unshiu_00289:mRNA_20.1	C_unshiu_00289	113542	116894	Galactose mutarotase-like superfamily protein
Cp2261			-	-	-	-	-	-		Ciclev10025819m	scaffold_7	1805676	1808859
Af2893			-	-	-	-	-	-		Ciclev10025356m	scaffold_7	1739443	1743149	C_unshiu_01334:mRNA_6.1	C_unshiu_01334	25863	29359	Putative mitochondrial chaperone BCS1-B	AGI-02	73.779
Af1619			-	-	-	-	-	-		Ciclev10026784m	scaffold_7	1608634	1610659	C_unshiu_00209:mRNA_18.2	C_unshiu_00209	147009	148975	Thioredoxin h	AGI-02	73.759
Af1562b			-	-	-	-	-	-		Ciclev10026749m	scaffold_7	1530713	1532413
Af1522			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Tf0002.2			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Cp1709		AAvailable marker	-	-	-	-	-	O		Ciclev10025382m	scaffold_7	1450748	1452915	C_unshiu_00624:mRNA_14.1	C_unshiu_00624	137579	139378	Cytochrome P450 84A1
Af1485a			-	-	-	-	-	-		Ciclev10026552m	scaffold_7	1381761	1382875
Lp0024		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI010,SI302	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q	AGI-02	74.555							RP-02.2	17.330
Lp0122		MDisagree by Marco analysis	O	-	-	-	-	-	SI170	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q							NAT-02S	69.942	RP-02.2	17.330
Wy0041			-	-	-	-	-	-		Ciclev10025903m	scaffold_7	1295839	1297378	C_unshiu_00218:mRNA_18.1	C_unshiu_00218	93074	94183	GDP-mannose 4,6 dehydratase 2	AGI-02	75.406
If0010		AAvailable marker	O	-	-	-	O	-		Ciclev10026308m	scaffold_7	1264965	1266960	C_unshiu_00218:mRNA_11.1	C_unshiu_00218	63403	65018	60S ribosomal protein L8	AGI-02	73.759	KmG-02	76.687	JtR-02	10.849	NAT-02S	71.041
Vs0007			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Gn0003			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Fb0995		OOthers	O	-	-	-	-	-	SI026	Ciclev10024677m	scaffold_7	1180019	1202408	C_unshiu_00544:mRNA_10.1	C_unshiu_00544	97318	121662	FAT domain-containing protein	AGI-02	74.555	KmG-02	82.954	JtR-02	10.215
Cp0135			-	-	-	-	-	-		Ciclev10027108m	scaffold_7	923672	926367
Af1301			-	-	-	-	-	-		Ciclev10025759m	scaffold_7	866845	870030
Lp0105		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI113,SI163,SI254	Ciclev10026412m	scaffold_7	815904	817239	C_unshiu_00353:mRNA_13.1	C_unshiu_00353	92033	93437	Hypothetical protein	AGI-02	75.939
Af1480			-	-	-	-	-	-		Ciclev10026531m	scaffold_7	782313	784526
Af1031			O	-	-	-	-	-		Ciclev10025711m	scaffold_7	718488	722516	C_unshiu_00353:mRNA_22.1	C_unshiu_00353	151145	154679	3-dehydroquinate synthase AroB	AGI-02	76.168
Gn0101			-	-	-	-	-	-		Ciclev10025706m	scaffold_7	662802	667420	C_unshiu_00353:mRNA_30.1	C_unshiu_00353	203269	207136	Protein MID1-COMPLEMENTING ACTIVITY 1	AGI-02	77.881
Tf0238			-	-	-	-	-	-	SI114	Ciclev10026387m	scaffold_7	551893	553909	C_unshiu_01559:mRNA_5.1	C_unshiu_01559	24035	34006	Receptor-like protein kinase THESEUS 1
Tf0221			-	-	-	-	-	-	SI057,SI225	Ciclev10025996m	scaffold_7	490750	492882	C_unshiu_00488:mRNA_7.1	C_unshiu_00488	44813	48259	Ankyrin repeat domain-containing protein, chloroplastic	AGI-02	81.212
Tf0398			-	-	-	-	-	-		Ciclev10025996m	scaffold_7	490750	492882
Af1230			-	-	-	-	-	-		Ciclev10026057m	scaffold_7	370952	372493
Cp1701			-	-	-	-	-	-		Ciclev10025659m	scaffold_7	303829	305426
Tf0026			O	-	-	-	-	-	SI111,SI288	Ciclev10025369m	scaffold_7	285299	292550	C_unshiu_00312:mRNA_28.1	C_unshiu_00312	151229	158232	Ubiquilin	AGI-02	78.531
Tf0448			-	-	-	-	-	-		Ciclev10026715m	scaffold_7	252320	254049
Al0525		OOthers	O	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023	C_unshiu_00312:mRNA_20.2	C_unshiu_00312	114652	116351	High mobility group (HMG)-box protein	AGI-01	38.939	KmG-01	41.081
Tf0160			-	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023
Ov0306		OOthers	-	-	-	-	-	-	SI382	Ciclev10026199m	scaffold_7	224443	227133	No					AGI-02	79.663	KmG-02	72.516	JtR-02	8.671	NAT-02S	60.000
Tf0362			-	-	-	-	-	-	SI062	Ciclev10026199m	scaffold_7	224443	227133	C_unshiu_02579:mRNA_3.1	C_unshiu_02579	13228	15002	WUSCHEL-related homeobox 13
Tf0139			-	-	-	-	-	-		Ciclev10026199m	scaffold_7	224443	227133
Af1315			-	-	-	-	-	-		Ciclev10025598m	scaffold_7	203839	207450
Al0627		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025602m	scaffold_7	128539	131642	C_unshiu_00706:mRNA_3.1	C_unshiu_00706	16590	18098	Trigalactosyldiacylglycerol 1 isoform 1	AGI-02	78.531
Tf0032		AAvailable marker	O	-	-	-	O	O		Ciclev10026014m	scaffold_7	94155	97631	C_unshiu_00706:mRNA_8.1	C_unshiu_00706	51525	54837	AT-hook motif nuclear-localized protein 10	AGI-02	78.531
Wy0023			-	-	-	-	-	-	SI037	Ciclev10025834m	scaffold_7	70855	73880	C_unshiu_00706:mRNA_12.1	C_unshiu_00706	76103	78923	Thioredoxin-disulfide reductase
Al0022			-	-	-	-	-	-		Ciclev10011465m	scaffold_6	25364317	25368608	C_unshiu_00009:mRNA_62.1	C_unshiu_00009	346583	350755	Mitochondrial-processing peptidase subunit alpha									SA-09	42.503
Lp0129			-	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949
Ov0513		OOthers	O	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00009:mRNA_59.1	C_unshiu_00009	325807	333424	Hypothetical protein	AGI-04	38.903	KmG-04	5.110					RP-04	60.491
Wy0040		AAvailable marker	O	-	-	-	-	O		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00001:mRNA_217.1	C_unshiu_00001	1378378	1380557	Hypothetical protein			KmG-04	12.855
Af1011			O	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243	C_unshiu_00009:mRNA_53.1	C_unshiu_00009	289462	299397	Hypothetical protein									RP-04	60.491
Tf0109.2			-	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243
Al0644			-	-	-	-	-	-		Ciclev10011184m	scaffold_6	25237872	25242427
Cp1887		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10010991m	scaffold_6	25193617	25201413	C_unshiu_00009:mRNA_34.1	C_unshiu_00009	183041	190334	ATP-dependent chaperone ClpB
Ov0303			-	-	-	-	-	-		Ciclev10011600m	scaffold_6	25160851	25164999
Af1410			-	-	-	-	-	-		Ciclev10012700m	scaffold_6	25131256	25133522
Af1646			-	-	-	-	-	-		Ciclev10012239m	scaffold_6	25121919	25125183
Af1548			-	-	-	-	-	-		Ciclev10012731m	scaffold_6	25114213	25116604
Bf0143			-	-	-	-	-	-		Ciclev10011434m	scaffold_6	25101237	25104868
Cp0955			-	-	-	-	-	-		Ciclev10011439m	scaffold_6	25101237	25104868
Af1443			-	-	-	-	-	-		Ciclev10011413m	scaffold_6	25048398	25053494	C_unshiu_00009:mRNA_3.1	C_unshiu_00009	15765	28846	Pentatricopeptide repeat-containing family protein	AGI-04	33.808
Tf0286		DDominant marker	O	-	-	-	-	-		Ciclev10011556m	scaffold_6	25001586	25004619	C_unshiu_01279:mRNA_6.1	C_unshiu_01279	43222	46082	Dof zinc finger protein DOF5.2	AGI-04	32.710
Vt0009			-	-	-	-	-	-		Ciclev10012382m	scaffold_6	24932481	24935909	C_unshiu_00135:mRNA_6.1	C_unshiu_00135	25891	28913	Major intrinsic protein (MIP) family transporter	AGI-04	38.770	KmG-04	14.707
Tf0050			-	-	-	-	-	-	SI104,SI346	Ciclev10012152m	scaffold_6	24874840	24876388	C_unshiu_00135:mRNA_12.1	C_unshiu_00135	84260	85810	Myb-related protein 306	AGI-04	36.106
Edb004			-	-	-	-	-	-		Ciclev10012152m	scaffold_6	24874840	24876388
Tf0364		AAvailable marker	O	-	-	-	O	O		Ciclev10011266m	scaffold_6	24606501	24612654	C_unshiu_00135:mRNA_49.1	C_unshiu_00135	338118	344273	FACT complex subunit SSRP1	AGI-04	37.102
Af1347			-	-	-	-	-	-		Ciclev10011781m	scaffold_6	24430779	24434240
Lp0046			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658
Af1462			-	-	-	-	-	-		Ciclev10012884m	scaffold_6	24274031	24276658	C_unshiu_00133:mRNA_50.1	C_unshiu_00133	274230	284897	Hypothetical protein	AGI-04	37.527
Af1382			-	-	-	-	-	-		Ciclev10012786m	scaffold_6	24264177	24265636
Al0004			-	-	-	-	-	-		Ciclev10011410m	scaffold_6	24157115	24161063
Gn0051		AAvailable marker	-	-	-	-	O	O	SI306,SI366	Ciclev10011780m	scaffold_6	24082263	24084635	C_unshiu_00133:mRNA_13.1	C_unshiu_00133	63870	65165	Protein UNUSUAL FLORAL ORGANS	AGI-04	39.510	KmG-04	0.447
Al0313		AAvailable marker	O	-	-	-	O	O		Ciclev10011272m	scaffold_6	23966039	23969583	C_unshiu_00133:mRNA_4.2	C_unshiu_00133	22485	26003	Putative phosphatidylinositol 4-kinase type 2-beta	AGI-04	38.152	KmG-04	9.748
Tf0254		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10010885m	scaffold_6	23916876	23939827	C_unshiu_00253:mRNA_3.1	C_unshiu_00253	14647	20586	Hypothetical protein	AGI-04	38.226
Tf0034			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Tf0044			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Af1240			-	-	-	-	-	-		Ciclev10011152m	scaffold_6	23748847	23753978
Tf0220			-	-	-	-	-	-		Ciclev10013334m	scaffold_6	23657256	23657810
Tf0397			-	-	-	-	-	-	SI008	Ciclev10013334m	scaffold_6	23657256	23657810	C_unshiu_00098:mRNA_65.1	C_unshiu_00098	441975	442704	Ocs element-binding factor 1	AGI-04	40.646
Tf0208			-	-	-	-	-	-	SI181	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein
Tf0386		AAvailable marker	O	O	O	-	O	O	SI044,SI095	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein	AGI-04	41.367
Cp2026		AAvailable marker	-	-	-	-	O	O		Ciclev10011534m	scaffold_6	23506491	23509585	C_unshiu_00098:mRNA_44.1	C_unshiu_00098	286004	289150	Tryptophan synthase, beta subunit	AGI-04	43.239
Af1639			-	-	-	-	-	-		Ciclev10012116m	scaffold_6	23462487	23466580	C_unshiu_00098:mRNA_36.1	C_unshiu_00098	239683	243712	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1	AGI-04	6.635
Ov0315		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10013467m	scaffold_6	23430375	23436161	C_unshiu_00098:mRNA_32.2	C_unshiu_00098	207615	213748	Putative nuclear matrix constituent protein 1-like protein			KmG-04	7.092
Af1519			-	-	-	-	-	-		Ciclev10012646m	scaffold_6	23416404	23418629
Ov0411			-	-	-	-	-	-		Ciclev10011259m	scaffold_6	23410636	23414246
Cp0085			O	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase	AGI-04	42.183
Al0020		OOthers	-	-	-	-	-	-		Ciclev10012552m	scaffold_6	23364303	23366061	C_unshiu_00098:mRNA_21.1	C_unshiu_00098	143026	144827	Allene oxide cyclase			KmG-04
Af1297			-	-	-	-	-	-		Ciclev10013207m	scaffold_6	23311867	23313814
Al0518			-	-	-	-	-	-		Ciclev10011450m	scaffold_6	23306386	23311678
Al0420			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23068026	23072168
Af1059			-	-	-	-	-	-		Ciclev10011827m	scaffold_6	23066384	23072168	C_unshiu_00038:mRNA_98.1	C_unshiu_00038	554982	560549	Plastidic glucose transporter 4	AGI-04	44.840
Lp0222			-	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Lp0236			O	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Af1600			-	-	-	-	-	-		Ciclev10013134m	scaffold_6	22758027	22760875	C_unshiu_00038:mRNA_51.4	C_unshiu_00038	305110	307864	Negatively light-regulated protein	AGI-04	5.122
Af1220			-	-	-	-	-	-		Ciclev10013088m	scaffold_6	22724682	22726973
Al0304		MDisagree by Marco analysis	-	-	-	-	-	-	SI259,SI293	Ciclev10013536m	scaffold_6	22616979	22619271	C_unshiu_00038:mRNA_27.1	C_unshiu_00038	174815	175255	Nutrient reservoir, putative	AGI-04	46.361	KmG-04	16.744			NAT-04		RP-04	54.617
Af1268			-	-	-	-	-	-		Ciclev10011546m	scaffold_6	22523213	22529556
Bf0008			-	-	-	-	-	-	SI309	Ciclev10012950m	scaffold_6	22467565	22470029	C_unshiu_00038:mRNA_5.1	C_unshiu_00038	40983	43503	Pollen-specific C2 domain containing protein	AGI-04	47.391							RP-04	50.862
Af1130			-	-	-	-	-	-		Ciclev10012011m	scaffold_6	22425094	22426402
Af1147			-	-	-	-	-	-		Ciclev10012837m	scaffold_6	22365433	22367412
Tf0056		AAvailable marker	O	-	-	-	O	O	SI061,SI137	Ciclev10012265m	scaffold_6	22305922	22308021	C_unshiu_00252:mRNA_6.1	C_unshiu_00252	48632	49537	Myb domain protein 42	AGI-04	49.225
Bf0224			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Af1428			-	-	-	-	-	-		Ciclev10012183m	scaffold_6	22244924	22252231
Cp0415			-	-	-	-	-	-		Ciclev10011681m	scaffold_6	22213544	22219300	C_unshiu_00074:mRNA_13.1	C_unshiu_00074	81301	86950	ATA15 protein	AGI-04	50.134
Af1508			-	-	-	-	-	-		Ciclev10011580m	scaffold_6	21983044	21991500	C_unshiu_00079:mRNA_48.1	C_unshiu_00079	328854	336213	Stomatal closure-related actin-binding protein 3	AGI-04	1.342
Bf1186			-	-	-	-	-	-	SI245	Ciclev10012047m	scaffold_6	21912438	21917736	C_unshiu_00079:mRNA_40.1	C_unshiu_00079	278696	283911	R3H domain-containing protein 2
Af1659			-	-	-	-	-	-		Ciclev10012047m	scaffold_6	21912438	21917736
Tf0021		AAvailable marker	-	-	-	-	-	O		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein
Af1499			-	-	-	-	-	-		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein	AGI-04
Cp1361		AAvailable marker	-	-	-	-	O	O		Ciclev10013042m	scaffold_6	21714716	21717652	C_unshiu_01167:mRNA_14.1	C_unshiu_01167	79036	81808	50S ribosomal 5 alpha, chloroplastic	AGI-04	52.740
Cp1362			-	-	-	-	-	-		Ciclev10011842m	scaffold_6	21598429	21600967
Ov0020		AAvailable marker	O	-	-	-	O	O	SI055,SI143,SI213	Ciclev10011842m	scaffold_6	21598429	21600967	C_unshiu_00037:mRNA_7.2	C_unshiu_00037	37719	40241	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase	AGI-04	55.145	KmG-04	22.465			NAT-04	3.806	RP-04	40.905
Lp0213			-	-	-	-	-	-		Ciclev10012814m	scaffold_6	21537952	21540938
Al0502			-	-	-	-	-	-		Ciclev10011657m	scaffold_6	21464335	21470434
Gmom19			-	-	-	-	-	-		Ciclev10011554m	scaffold_6	21450811	21454133	C_unshiu_00037:mRNA_27.1	C_unshiu_00037	166873	170276	Protein CCA1	AGI-04	54.804
Tf0104			-	-	-	-	-	-		Ciclev10011554m	scaffold_6	21450811	21454133
Tf0314			-	-	-	-	-	-		Ciclev10012525m	scaffold_6	21263744	21265650
Al0503			-	-	-	-	-	-		Ciclev10011469m	scaffold_6	21236903	21242261
Tf0373			-	-	-	-	-	-	SI088	Ciclev10011502m	scaffold_6	21229813	21233537	C_unshiu_00037:mRNA_60.1	C_unshiu_00037	387538	391239	Uridylate kinase, putative	AGI-04	61.716
Wy0029			-	-	-	-	-	-		Ciclev10012640m	scaffold_6	21145703	21148279	C_unshiu_00052:mRNA_26.1	C_unshiu_00052	161014	162179	Type II peroxiredoxin	AGI-04
Mf0092		AAvailable marker	-	-	-	-	O	O	SI138	Ciclev10012056m	scaffold_6	21137783	21142157	C_unshiu_00052:mRNA_27.2	C_unshiu_00052	168316	172622	Phosphopyruvate hydratase	AGI-04	59.190	KmG-04	30.795			NAT-04	11.576
Af2704			-	-	-	-	-	-		Ciclev10012216m	scaffold_6	21132427	21135018
Af1143			-	-	-	-	-	-		Ciclev10012182m	scaffold_6	21127984	21132025
Vs0010			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Vs0011			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Al0514		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme			KmG-04	32.217
Af1412			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
If0210			-	-	-	-	-	-	SI042	Ciclev10012145m	scaffold_6	21035910	21038368	C_unshiu_00052:mRNA_38.1	C_unshiu_00052	265461	267883	Fructose-bisphosphate aldolase, cytoplasmic isozyme	AGI-02	73.759
Tf0136			-	-	-	-	-	-		Ciclev10011338m	scaffold_6	21028837	21031557
Cp0815			-	-	-	-	-	-		Ciclev10012928m	scaffold_6	20956326	20958294
Lp0206			O	-	-	-	-	-		Ciclev10011764m	scaffold_6	20836509	20840107	C_unshiu_00052:mRNA_56.1	C_unshiu_00052	452105	455631	Monodehydroascorbate reductase	AGI-04	58.655
Af1332			-	-	-	-	-	-		Ciclev10013051m	scaffold_6	20834427	20836151	C_unshiu_00052:mRNA_57.1	C_unshiu_00052	455959	457684	60S acidic ribosomal protein	AGI-04
Af1005			-	-	-	-	-	-		Ciclev10012491m	scaffold_6	20715590	20719704
Cp0813			-	-	-	-	-	-	SI047	Ciclev10011980m	scaffold_6	20638049	20641557	C_unshiu_00046:mRNA_46.1	C_unshiu_00046	406041	409549	Alpha/beta fold hydrolase	AGI-04	58.655
Af1247			-	-	-	-	-	-		Ciclev10011980m	scaffold_6	20638049	20641557
Af1232			-	-	-	-	-	-		Ciclev10011608m	scaffold_6	20541096	20546049
If0011		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10013189m	scaffold_6	20522569	20523527	C_unshiu_00331:mRNA_8.1	C_unshiu_00331	122906	127189	PLASMODESMATA CALLOSE-BINDING PROTEIN 3
Af1426			-	-	-	-	-	-		Ciclev10013333m	scaffold_6	20497289	20501732
Cp1771			-	-	-	-	-	-		Ciclev10011285m	scaffold_6	20404516	20411982
Cp1798		AAvailable marker	-	-	-	-	O	O		Ciclev10012134m	scaffold_6	20319677	20323198	C_unshiu_00215:mRNA_34.1	C_unshiu_00215	205164	208490	Orange 2	AGI-04	60.291
Ov0022			-	-	-	-	-	-		Ciclev10011738m	scaffold_6	20161613	20163972
Bf0148			-	-	-	-	-	-		Ciclev10012535m	scaffold_6	20133118	20134805	No					AGI-04	62.325					NAT-04	12.575
Af1530			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Al0243			-	-	-	-	-	-		Ciclev10013041m	scaffold_6	20092033	20095946
Cp1056			-	-	-	-	-	-		Ciclev10012459m	scaffold_6	20024370	20027538
Wy0048	Wy0048.k		-	-	-	-	-	-		Ciclev10010999m	scaffold_6	19900235	19904192	C_unshiu_00043:mRNA_54.1	C_unshiu_00043	424252	427984	Putative receptor protein kinase TMK1	AGI-04	63.371					NAT-04	21.157
Tf0073			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Em0003			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299	C_unshiu_00043:mRNA_48.1	C_unshiu_00043	360776	363775	BEL1-like homeodomain protein 1	AGI-08	56.724
Tf0416			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Gn0066.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475	C_unshiu_00043:mRNA_12.1	C_unshiu_00043	90212	94791	Carotenoid isomerase	AGI-04
Af1457			-	-	-	-	-	-		Ciclev10011230m	scaffold_6	19578179	19583475
Ov0318		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012779m	scaffold_6	19405285	19407278	C_unshiu_00273:mRNA_20.1	C_unshiu_00273	103250	105183	40S ribosomal protein S5
Cp0895		AAvailable marker	-	-	-	-	O	O		Ciclev10011406m	scaffold_6	19241700	19246874	C_unshiu_00089:mRNA_3.1	C_unshiu_00089	9945	14749	ATP-dependent RNA helicase	AGI-04	67.375
Tf0075			-	-	-	-	-	-	SI059,SI248	Ciclev10010972m	scaffold_6	19142307	19156510	C_unshiu_00089:mRNA_11.1	C_unshiu_00089	108874	122025	Homoserine kinase	AGI-04	66.455
Ov0117		AAvailable marker	O	-	-	-	O	O	SI040	Ciclev10010926m	scaffold_6	19105139	19113780	C_unshiu_00089:mRNA_17.1	C_unshiu_00089	153791	161685	Hypothetical protein	AGI-04	66.455							RP-04	28.160
Af1093			-	-	-	-	-	-		Ciclev10011263m	scaffold_6	19055518	19058726
Edp004			-	-	-	-	-	-		Ciclev10013382m	scaffold_6	19046544	19048141
Wy0027			-	-	-	-	-	-		Ciclev10011949m	scaffold_6	18896261	18902614
Ov0107			-	-	-	-	-	-		Ciclev10011477m	scaffold_6	18855028	18858879
Gn0047			-	-	-	-	-	-		Ciclev10011938m	scaffold_6	18741181	18744166	C_unshiu_00139:mRNA_23.1	C_unshiu_00139	204645	207518	Squamosa promoter-binding-like protein 9			KmG-04	48.092
Af1119			-	-	-	-	-	-		Ciclev10012975m	scaffold_6	18723147	18725557
Gn0035			-	-	-	-	-	-		Ciclev10011766m	scaffold_6	18517611	18519337
Ov0408		AAvailable marker	-	-	-	-	-	O		Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_00248:mRNA_30.1	C_unshiu_00248	247183	248778	UDP-glycosyltransferase 71C4			KmG-04	50.902					RP-04	23.745
Wy0016			-	-	-	-	-	-	SI068	Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_01309:mRNA_6.1	C_unshiu_01309	21942	23382	UDP-glycosyltransferase 71B1			KmG-04	47.990
Ov0405			-	-	-	-	-	-		Ciclev10011509m	scaffold_6	18406856	18412391
Tf0006			-	-	-	-	-	-		Ciclev10011540m	scaffold_6	18299497	18301431
Af3392			-	-	-	-	-	-		Ciclev10013692m	scaffold_6	18248777	18250446
Al0323		OOthers	-	-	-	-	-	-		Ciclev10012875m	scaffold_6	18188139	18189060
Ov0017			-	-	-	-	-	-		Ciclev10011979m	scaffold_6	18167218	18172180
Cp1323			-	-	-	-	-	-		Ciclev10012716m	scaffold_6	17992563	17993671
Vt0016			-	-	-	-	-	-		Ciclev10011403m	scaffold_6	17974828	17979364
Af1670			-	-	-	-	-	-		Ciclev10011668m	scaffold_6	17867902	17874268
Al0241			-	-	-	-	-	-		Ciclev10012288m	scaffold_6	17857849	17860063
Ov0523			-	-	-	-	-	-		Ciclev10011639m	scaffold_6	17762614	17767198
Lp0210			-	-	-	-	-	-		Ciclev10012425m	scaffold_6	17651466	17653457
Cp0849			-	-	-	-	-	-	SI355	Ciclev10012425m	scaffold_6	17651466	17653457	C_unshiu_00090:mRNA_56.2	C_unshiu_00090	364770	367591	Non-green plastid inner envelope membrane protein
Tf0080			-	-	-	-	-	-		Ciclev10011039m	scaffold_6	17611201	17617794
Af1270			-	-	-	-	-	-		Ciclev10011405m	scaffold_6	17589895	17593051
Al0223			-	-	-	-	-	-		Ciclev10011771m	scaffold_6	17438270	17440122	C_unshiu_00008:mRNA_127.1	C_unshiu_00008	890026	891371	CBL-interacting serine/threonine-protein kinase 11									RP-04	17.965
Cp0787			-	-	-	-	-	-		Ciclev10011650m	scaffold_6	17402877	17405928
Cp0848			-	-	-	-	-	-		Ciclev10012679m	scaffold_6	17002904	17003946
Af1455			-	-	-	-	-	-		Ciclev10012934m	scaffold_6	16927888	16930377
Ov0305		MDisagree by Marco analysis	O	-	-	-	-	-	SI028,SI292	Ciclev10012499m	scaffold_6	16909492	16912088	C_unshiu_00008:mRNA_65.1	C_unshiu_00008	366943	369504	40S ribosomal protein S4	AGI-08	88.433	KmG-04	45.755					RP-04	15.410
Cp1745			-	-	-	-	-	-		Ciclev10011480m	scaffold_6	16903668	16906771
Af1510			-	-	-	-	-	-		Ciclev10010950m	scaffold_6	16871274	16876833
Ov0419		AAvailable marker	-	-	-	-	-	O		Ciclev10011593m	scaffold_6	16709179	16712039	C_unshiu_00008:mRNA_31.2	C_unshiu_00008	178086	180944	Pyruvate decarboxylase									RP-04	11.143
Wy0033			-	-	-	-	-	-		Ciclev10011317m	scaffold_6	16709179	16712039
Af1201			-	-	-	-	-	-		Ciclev10012248m	scaffold_6	16637520	16640347
Cp0844			-	-	-	-	-	-		Ciclev10012026m	scaffold_6	16429543	16431668
Tf0261			-	-	-	-	-	-		Ciclev10012615m	scaffold_6	16418285	16421471
Lp0103		OOthers	-	-	-	-	-	-		Ciclev10012274m	scaffold_6	16393309	16395378	C_unshiu_00332:mRNA_15.1	C_unshiu_00332	142648	144673	Pyridoxal biosynthesis lyase pdxS									RP-04	11.437
Af1044			-	-	-	-	-	-		Ciclev10013662m	scaffold_6	16378858	16383103
Sd0001			-	-	-	-	-	-		Ciclev10013084m	scaffold_6	16344482	16346981
Su0001			-	-	-	-	-	-		Ciclev10012726m	scaffold_6	16312840	16314254
Bf0003		ULess informative for main cultivars	O	-	-	-	-	-	SI354	Ciclev10011720m	scaffold_6	16246773	16250769	C_unshiu_00390:mRNA_6.1	C_unshiu_00390	75799	78947	Vacuolar cation/proton exchanger 3									RP-04	10.253
Mf0032		OOthers	-	-	-	-	-	-		Ciclev10013688m	scaffold_6	16004467	16005081
Tf0311		AAvailable marker	O	-	-	-	O	O		Ciclev10011596m	scaffold_6	15932016	15936176	C_unshiu_00779:mRNA_8.1	C_unshiu_00779	78105	81377	Auxin transporter-like protein 2	AGI-08	91.890
Cp1741			-	-	-	-	-	-		Ciclev10011473m	scaffold_6	15803864	15809998
Bf0123			-	-	-	-	-	-	SI141	Ciclev10011473m	scaffold_6	15803864	15809998	C_unshiu_00284:mRNA_13.1	C_unshiu_00284	114758	120828	Sulfoquinovosyldiacylglycerol 2	AGI-08	92.221							RP-04	10.226
Tf0188			-	-	-	-	-	-		Ciclev10012285m	scaffold_6	15774976	15777653
Cp0839			-	-	-	-	-	-		Ciclev10011239m	scaffold_6	15703559	15706187
Mf0051			-	-	-	-	-	-		Ciclev10012294m	scaffold_6	15434942	15438427
Af1566			-	-	-	-	-	-		Ciclev10011855m	scaffold_6	15346135	15348332
Wy0062	Wy0062.em		-	-	-	-	-	-		Ciclev10011305m	scaffold_6	15214969	15222324	C_unshiu_00034:mRNA_76.1	C_unshiu_00034	634791	641934	Peptidyl-prolyl cis-trans isomerase PASTICCINO1	AGI-02	78.531
If0206		DDominant marker	-	-	-	-	-	-	SI208	Ciclev10012955m	scaffold_6	15192652	15194091	C_unshiu_00034:mRNA_78.1	C_unshiu_00034	662958	664402	Universal stress protein A-like protein
Af1062			-	-	-	-	-	-		Ciclev10012766m	scaffold_6	14892939	14897320	C_unshiu_00102:mRNA_47.1	C_unshiu_00102	331172	333886	PRA1 family protein A1	AGI-08	93.624
Af1475			-	-	-	-	-	-		Ciclev10012178m	scaffold_6	14868821	14872700
Tf0197			-	-	-	-	-	-		Ciclev10012447m	scaffold_6	14804828	14808139
Tf0451			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Tf0181			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Al0501		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10012221m	scaffold_6	14625884	14628443	C_unshiu_00032:mRNA_48.1	C_unshiu_00032	462609	490932	Tropinone reductase I
Al0422		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662	C_unshiu_00032:mRNA_34.1	C_unshiu_00032	369423	370581	Subtilisin inhibitor 1, putative	AGI-08	93.695
Al0423	Al0422.2		-	-	-	-	-	-		Ciclev10013176m	scaffold_6	14495473	14496662
Af1574			-	-	-	-	-	-		Ciclev10011911m	scaffold_6	14444651	14447199
Af1618			-	-	-	-	-	-		Ciclev10013090m	scaffold_6	14397047	14399928
Af1333			-	-	-	-	-	-		Ciclev10012166m	scaffold_6	14281197	14286862
Af1627			-	-	-	-	-	-		Ciclev10012518m	scaffold_6	14194454	14196761
Tf0315		AAvailable marker	O	-	-	-	O	O		Ciclev10012089m	scaffold_6	14087181	14090115	C_unshiu_00287:mRNA_20.1	C_unshiu_00287	221944	222997	Phantastica	AGI-08	93.657
Bf1204			-	-	-	-	-	-	SI364	Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein
Mf0069			-	-	-	-	-	-		Ciclev10013297m	scaffold_6	13750671	13752605
Mf0072		AAvailable marker	-	-	-	-	O	O		Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein	AGI-04	91.104	KmG-04	58.483					RP-04	8.126
Af1346			-	-	-	-	-	-		Ciclev10013045m	scaffold_6	13547529	13550344
Af1345			-	-	-	-	-	-		Ciclev10013023m	scaffold_6	13082313	13084012	C_unshiu_01022:mRNA_2.1	C_unshiu_01022	8566	10161	Histone H2A	AGI-08	93.624
Cp1991			-	-	-	-	-	-		Ciclev10013023m	scaffold_6	13082313	13084012
Lp0036			-	-	-	-	-	-		Ciclev10012725m	scaffold_6	12998055	13001834
Gn0001			-	-	-	-	-	-		Ciclev10012905m	scaffold_6	12840408	12842940
Af1185			-	-	-	-	-	-		Ciclev10012743m	scaffold_6	12231037	12235473
Cp0825			-	-	-	-	-	-		Ciclev10013683m	scaffold_6	11898827	11905679
Cp0003			-	-	-	-	-	-		Ciclev10012377m	scaffold_6	11826472	11830875
Tf0062		Bno homozygous cultivar with minor allele	O	-	-	O	-	-	SI223	Ciclev10012377m	scaffold_6	11826472	11830875	C_unshiu_00207:mRNA_24.2	C_unshiu_00207	252955	255240	Transcription factor ASG4	AGI-08	93.624
Tf0142			-	-	-	-	-	-		Ciclev10012377m	scaffold_6	11826472	11830875
Al0421		OOthers	-	-	-	-	-	-		Ciclev10011875m	scaffold_6	11782952	11785527
Al0019			-	-	-	-	-	-		Ciclev10012798m	scaffold_6	11739634	11741636
Tf0271		Bno homozygous cultivar with minor allele	O	O	-	O	-	-		Ciclev10010976m	scaffold_6	11707953	11715646	C_unshiu_01619:mRNA_7.1	C_unshiu_01619	42347	50640	CCR4-NOT transcription complex subunit 4	AGI-08	95.613
Mf0076		AAvailable marker	-	-	-	-	O	O		Ciclev10012554m	scaffold_6	11704199	11706676	C_unshiu_00207:mRNA_15.1	C_unshiu_00207	132539	134984	Cytosolic ascorbate peroxidase	AGI-08	93.624
Tf0348			-	-	-	-	-	-	SI118	Ciclev10012920m	scaffold_6	11611994	11614367	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8	AGI-08	96.565
Al0643			-	-	-	-	-	-		Ciclev10012685m	scaffold_6	11126658	11131076	C_unshiu_02977:mRNA_1.1	C_unshiu_02977	1950	2673	Dolichyldiphosphatase 1	AGI-08	56.724
Al0642			-	-	-	-	-	-		Ciclev10012548m	scaffold_6	11100647	11103340
Bf0407			-	-	-	-	-	-		Ciclev10011592m	scaffold_6	10729034	10731466
Bf0112			-	-	-	-	-	-		Ciclev10011997m	scaffold_6	10485064	10488724
Al0011	Al0010.2		-	-	-	-	-	-		Ciclev10012654m	scaffold_6	10316999	10318328	C_unshiu_00806:mRNA_1.2	C_unshiu_00806	21305	22892	Polyubiquitin	AGI-03	46.768
Ov0510		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011175m	scaffold_6	10016564	10019369	C_unshiu_00279:mRNA_11.1	C_unshiu_00279	116848	119657	Phenylalanine ammonia-lyase 1			KmG-04	62.284	JtR-04	3.789
Ov0402			-	-	-	-	-	-		Ciclev10011849m	scaffold_6	9847502	9854667
Af1485b			-	-	-	-	-	-		Ciclev10012181m	scaffold_6	8936705	8942681
Bf0419			-	-	-	-	-	-		Ciclev10012995m	scaffold_6	8696694	8697639
Af1336			-	-	-	-	-	-		Ciclev10012322m	scaffold_6	8621439	8630049
Wy0059	Wy0059.em		-	-	-	-	-	-		Ciclev10012904m	scaffold_6	8562431	8564865	C_unshiu_00232:mRNA_33.1	C_unshiu_00232	292640	294683	DUF538 family protein	AGI-08	91.502
Cp0973		OOthers	-	-	-	-	-	-		Ciclev10013409m	scaffold_6	8193393	8195764	C_unshiu_00407:mRNA_4.1	C_unshiu_00407	55425	57717	Thioredoxin F-type, chloroplastic
Cp0974			-	-	-	-	-	-		Ciclev10011578m	scaffold_6	8029488	8035109	C_unshiu_00711:mRNA_6.1	C_unshiu_00711	128510	138133	Hypothetical protein	AGI-04	107.018
Cp1267		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011346m	scaffold_6	7983788	7991526	C_unshiu_02325:mRNA_1.1	C_unshiu_02325	1642	9359	Riboflavin biosynthesis protein RibD	AGI-08	94.382
Cp0975		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10012312m	scaffold_6	7924189	7928192	C_unshiu_00631:mRNA_15.1	C_unshiu_00631	149702	153660	Isopentenyl pyrophosphate isomerase	AGI-07	29.152
Tf0224		OOthers	O	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808	C_unshiu_00104:mRNA_54.1	C_unshiu_00104	400959	412354	Zinc finger CCCH domain-containing protein 32	AGI-04	99.859
Tf0401			-	-	-	-	-	-

Key word search

Target: Genome/map	Scaffold/LG