Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
Al0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40317721 | 40321609 | ![]() | C_unshiu_00054 | 5765 | 8674 | 26S proteasome non-ATPase regulatory subunit 14 | SA-09 | 50.699 | |||||||||||
Fb0138 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38499024 | 38504883 | ![]() | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
Cp0419 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_5 | 28815314 | 28816638 | ![]() | C_unshiu_00758 | 794 | 4329 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-09 | 88.739 | SA-09 | 44.226 | ||||||||
Al0022 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25364317 | 25368608 | ![]() | C_unshiu_00009 | 346583 | 350755 | Mitochondrial-processing peptidase subunit alpha | SA-09 | 42.503 | |||||||||||
Ov0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1344192 | 1349935 | ![]() | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
Fb2159 | - | - | - | - | - | - | SI205,SI300 | ![]() ![]() | scaffold_3 | 39606431 | 39608387 | ![]() | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
Ov0525 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 15833142 | 15836770 | ![]() | C_unshiu_01875 | 35983 | 39196 | ADP/ATP translocase 1 | AGI-06 | 91.522 | SA-06 | 27.092 | ||||||||
Ov0401 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28736008 | 28740315 | No | KmG-08 | 58.635 | SA-06 | |||||||||||||
Mf0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2645845 | 2647776 | No | SA-05 | 30.880 | |||||||||||||||
Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | ![]() ![]() | scaffold_5 | 43060442 | 43066562 | ![]() | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
Fb0326 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 43051579 | 43053394 | ![]() | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
Bf0213 | - | - | - | - | - | - | SI097 | ![]() ![]() | scaffold_5 | 37693882 | 37699178 | ![]() | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
Tf0069 | - | - | - | - | - | - | SI199 | ![]() ![]() | scaffold_5 | 38566192 | 38571337 | ![]() | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
Ov0407 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37043417 | 37051080 | ![]() | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
Fb0153 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36347986 | 36350649 | ![]() | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36398988 | 36399239 | ![]() | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
Bf0218 | O | - | - | - | - | - | SI232 | ![]() ![]() | scaffold_5 | 36036990 | 36048487 | ![]() | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
Cp1162 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 35908181 | 35912917 | ![]() | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
Bf0016 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 35782419 | 35784765 | ![]() | C_unshiu_00255 | 146364 | 148653 | Protein CutA 1, chloroplastic | RP-09 | 67.943 | |||||||||||
Tf0151 | AAvailable marker | O | - | - | - | O | O | SI159,SI281 | ![]() ![]() | scaffold_5 | 35357333 | 35359897 | No | AGI-09 | 60.528 | RP-09 | 41.892 | |||||||||||
Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29463604 | 29466318 | ![]() | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | ![]() ![]() | scaffold_5 | 29400846 | 29403554 | ![]() | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
Ov0404 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_5 | 29768091 | 29769281 | ![]() | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
Tf0393 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_5 | 29413143 | 29414562 | ![]() | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | RP-09 | 29.347 | ||||||||||
If0216 | OOthers | O | - | - | - | - | - | SI174 | ![]() ![]() | scaffold_2 | 12876952 | 12881843 | ![]() | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
Bf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 24103753 | 24107361 | ![]() | C_unshiu_00011 | 511309 | 514460 | Protein ETHYLENE INSENSITIVE 3 | RP-09 | 27.641 | |||||||||||
Edp005 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21203994 | 21212595 | ![]() | C_unshiu_00020 | 742433 | 758888 | Retinoblastoma protein 2 | AGI-09 | 105.195 | RP-09 | 23.442 | ||||||||
Ov0509 | ULess informative for main cultivars | O | - | - | - | - | - | No | AGI-09 | 102.280 | RP-09 | 21.445 | ||||||||||||||||
Ov0111 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 8532280 | 8539677 | ![]() | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
Fb0373 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6404463 | 6435349 | ![]() | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
Ov0502 | - | - | - | - | - | - | ![]() | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
Mf0088 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 5104067 | 5106917 | ![]() | C_unshiu_00108 | 101283 | 105493 | 60S ribosomal protein L3 | RP-09 | |||||||||||
Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | ![]() ![]() | scaffold_8 | 8176371 | 8177435 | ![]() | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
Al0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19546541 | 19549348 | ![]() | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | RP-08 | 23.447 | |||||||||||
Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20424287 | 20425903 | ![]() | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
Fb0223 | - | - | - | - | - | - | SI240 | ![]() | C_unshiu_00303 | 108935 | 110191 | E3 ubiquitin-protein ligase ATL6 | RP-08 | 15.967 | ||||||||||||||
Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | ![]() ![]() | scaffold_8 | 22730839 | 22737522 | ![]() | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | ![]() ![]() | scaffold_8 | 23456630 | 23459052 | ![]() | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
Al0212 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5258045 | 5259521 | ![]() | C_unshiu_00288 | 142758 | 144183 | Mitochondrial uncoupling protein 3 | KmG-02 | 43.821 | JtR-02 | 30.507 | RP-08 | ||||||||
Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | ![]() ![]() | scaffold_4 | 2422861 | 2424838 | ![]() | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | ![]() ![]() | scaffold_4 | 115362 | 118025 | ![]() | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
Mf0034 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1559490 | 1563887 | ![]() | C_unshiu_00012 | 732963 | 736971 | DEAD-box ATP-dependent RNA helicase 27 | RP-07 | 73.631 | ||||||||||
Bf0021 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1058825 | 1062698 | ![]() | C_unshiu_00012 | 227838 | 231495 | Anthranilate synthase component I | RP-07 | 52.587 | |||||||||||
Al0505 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 947943 | 949892 | ![]() | C_unshiu_00012 | 117194 | 125051 | Plasma membrane intrinsic protein | RP-07 | 51.815 | |||||||||||
Bf0109 | - | - | - | - | - | - | SI233 | ![]() ![]() | scaffold_4 | 1970129 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | RP-07 | 51.394 | ||||||||||
Lp0112 | AAvailable marker | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3749809 | 3751724 | ![]() | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
Fb0322 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3249710 | 3254808 | ![]() | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
Mf0097 | AAvailable marker | O | O | - | O | O | O | SI235,SI365 | No | AGI-07 | 44.663 | KmG-07 | 50.959 | JtR-07 | 44.863 | NAT-07 | 3.290 | RP-07 | 46.168 | |||||||||
Fb0234 | - | - | - | - | - | - | SI250,SI265 | ![]() ![]() | scaffold_4 | 16176836 | 16178421 | ![]() | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
Al0206 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12309480 | 12311438 | ![]() | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | ![]() | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
Bf0031 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 4077557 | 4083819 | ![]() | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
Al0331 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 8406632 | 8407188 | ![]() | C_unshiu_00111 | 83531 | 84087 | Hypothetical protein | KmG-09 | 9.593 | JtR-07 | 52.611 | RP-07 | 19.079 | ||||||
Lp0232 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21120135 | 21127140 | ![]() | C_unshiu_00010 | 751317 | 757205 | CHASE-domain containing histidine kinase 1 | RP-07 | 19.079 | |||||||||||
Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | ![]() ![]() | scaffold_2 | 3067337 | 3069249 | ![]() | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
Fb0313 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29803196 | 29804310 | ![]() | C_unshiu_00570 | 69328 | 70168 | Mitochondrial import inner membrane translocase subunit tim23 | RP-07 | 9.871 | |||||||||||
Bf0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21861774 | 21865635 | ![]() | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
Ov0105 | MDisagree by Marco analysis | O | - | - | - | - | - | SI126,SI278 | ![]() ![]() | scaffold_4 | 23552856 | 23556415 | ![]() | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | NAT-07 | 36.023 | RP-07 | ||||||||
Al0633 | OOthers | O | - | - | - | - | O | SI123 | ![]() ![]() | scaffold_2 | 33837403 | 33842156 | ![]() | C_unshiu_00002 | 901824 | 911260 | Vascular plant one zinc finger protein isoform 1 | KmG-06 | 55.857 | JtR-06S | 59.645 | NAT-06S | 51.106 | RP-06.2 | 27.837 | |||
Fb0104 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35758546 | 35760859 | ![]() | C_unshiu_00337 | 135198 | 136991 | Tropinone reductase like | AGI-06 | 16.857 | RP-06.2 | 16.271 | ||||||||
Bf0193 | O | - | - | - | - | - | SI100,SI109 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
Mf0008 | OOthers | - | - | - | - | - | - | No | RP-06.2 | |||||||||||||||||||
Bf0147 | - | - | - | - | - | - | SI165 | ![]() ![]() | scaffold_2 | 5975367 | 5977280 | ![]() | C_unshiu_00260 | 124629 | 126502 | Flavonoid 3'-monooxygenase | RP-06.1 | 47.841 | ||||||||||
Bf0116 | - | - | - | - | - | - | SI260 | ![]() ![]() | scaffold_2 | 7662753 | 7667440 | ![]() | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
Al0224 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_2 | 26630154 | 26632900 | ![]() | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
Ov0422 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_2 | 11071587 | 11074479 | ![]() | C_unshiu_00184 | 295953 | 298736 | 14-3-3-like protein GF14 mu | RP-06.1 | 28.576 | ||||||||||
Al0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11604956 | 11606340 | ![]() | C_unshiu_00957 | 38508 | 39910 | Xyloglucan endotransglucosylase/hydrolase protein A | RP-06.1 | 28.573 | |||||||||||
Tf0173 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26097343 | 26099320 | ![]() | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
Lp0229 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24637053 | 24639946 | ![]() | C_unshiu_00136 | 221432 | 223640 | ARM repeat superfamily protein | RP-06.1 | 25.198 | |||||||||||
Fb1916 | - | - | - | - | - | - | SI336 | ![]() ![]() | scaffold_2 | 12043969 | 12046230 | ![]() | C_unshiu_00026 | 110679 | 112686 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 | RP-06.1 | 24.027 | ||||||||||
Af1026 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24690261 | 24692734 | ![]() | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
Bf0159 | - | - | - | - | - | - | SI074 | ![]() ![]() | scaffold_2 | 13502268 | 13505597 | ![]() | C_unshiu_01990 | 10471 | 13748 | DCD (Development and cell death) domain protein | RP-06.1 | 23.326 | ||||||||||
Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | ![]() ![]() | scaffold_2 | 14143537 | 14146003 | ![]() | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
Fb0296 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22689124 | 22695586 | ![]() | C_unshiu_01495 | 60336 | 62557 | Hypothetical protein | RP-06.1 | 10.382 | |||||||||||
Al0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16223771 | 16226683 | ![]() | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
Al0519 | DDominant marker | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 15833142 | 15836770 | No | RP-06.1 | |||||||||||||||
Al0309 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | ![]() | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43447942 | 43449920 | ![]() | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
Lp0133 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ![]() | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | ![]() ![]() | scaffold_3 | 46814909 | 46817474 | ![]() | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
Ov0501 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48089473 | 48091232 | ![]() | C_unshiu_00026 | 712172 | 713868 | Nepenthesin II | RP-05 | 61.026 | |||||||||||
Bf0030 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46452893 | 46453717 | ![]() | C_unshiu_00627 | 45215 | 45931 | Calvin cycle protein CP12 | RP-05 | 58.661 | |||||||||||
Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | ![]() ![]() | scaffold_3 | 13810497 | 13813004 | ![]() | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
Ov0112 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 33252463 | 33253730 | ![]() | C_unshiu_01571 | 43836 | 45084 | Sulfotransferase | KmG-05S | 42.335 | RP-05 | 53.076 | ||||||||
Fb1784 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 445469 | 446936 | ![]() | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | ![]() ![]() | scaffold_3 | 30648732 | 30651259 | ![]() | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ![]() | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
Wy0044.3 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49621665 | 49623875 | ![]() | C_unshiu_00126 | 300225 | 314275 | Hypothetical protein | RP-05 | 49.102 | |||||||||||
Lp0235 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9466071 | 9468445 | ![]() | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
Fb0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4873970 | 4878979 | ![]() | C_unshiu_00039 | 54980 | 59746 | Protein arginine N-methyltransferase 1 | RP-05 | 33.168 | |||||||||||
Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | ![]() ![]() | scaffold_3 | 6502231 | 6504139 | ![]() | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | ![]() | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
Lp0207 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6140332 | 6142252 | ![]() | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
Bf0138 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6072460 | 6076187 | ![]() | C_unshiu_00428 | 119232 | 121021 | Oxygen-evolving enhancer protein 2, chloroplastic | NAT-05 | 14.555 | RP-05 | 24.995 | ||||||||
Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
Bf0158 | - | O | - | O | - | - | SI376 | ![]() ![]() | scaffold_3 | 5253281 | 5254755 | ![]() | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
Bf0165 | - | - | - | - | - | - | SI280 | ![]() ![]() | scaffold_3 | 4903592 | 4905871 | ![]() | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
Af1011 | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25306829 | 25315243 | ![]() | C_unshiu_00009 | 289462 | 299397 | Hypothetical protein | RP-04 | 60.491 | |||||||||||
Ov0513 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ![]() | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | ![]() ![]() | scaffold_6 | 22616979 | 22619271 | ![]() | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
Bf0008 | - | - | - | - | - | - | SI309 | ![]() ![]() | scaffold_6 | 22467565 | 22470029 | ![]() | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ![]() | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44202968 | 44205663 | ![]() | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | ![]() ![]() | scaffold_6 | 19105139 | 19113780 | ![]() | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
Ov0408 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 18491789 | 18493623 | ![]() | C_unshiu_00248 | 247183 | 248778 | UDP-glycosyltransferase 71C4 | KmG-04 | 50.902 | RP-04 | 23.745 | ||||||||
Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | ![]() | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
Al0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17438270 | 17440122 | ![]() | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
Bf0189 | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | ![]() ![]() | scaffold_6 | 16909492 | 16912088 | ![]() | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
Lp0103 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16393309 | 16395378 | ![]() | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
Ov0419 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 16709179 | 16712039 | ![]() | C_unshiu_00008 | 178086 | 180944 | Pyruvate decarboxylase | RP-04 | 11.143 | ||||||||||
Bf0003 | ULess informative for main cultivars | O | - | - | - | - | - | SI354 | ![]() ![]() | scaffold_6 | 16246773 | 16250769 | ![]() | C_unshiu_00390 | 75799 | 78947 | Vacuolar cation/proton exchanger 3 | RP-04 | 10.253 | |||||||||
Bf0123 | - | - | - | - | - | - | SI141 | ![]() ![]() | scaffold_6 | 15803864 | 15809998 | ![]() | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
Mf0072 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
Bf0019 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 232123 | 235806 | ![]() | C_unshiu_00376 | 72474 | 76027 | Putative serine/threonine-protein kinase Cx32 | RP-04 | ||||||||||||
Bf0150 | - | - | - | - | - | - | SI316,SI370 | ![]() ![]() | scaffold_9 | 31018836 | 31027361 | ![]() | C_unshiu_00003 | 596288 | 610960 | Aldehyde dehydrogenase | AGI-03 | 77.920 | RP-03 | 77.748 | ||||||||
Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | ![]() ![]() | scaffold_9 | 30513333 | 30517676 | ![]() | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
Ov0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27640074 | 27641178 | ![]() | C_unshiu_00252 | 89281 | 90198 | 21 kDa protein | RP-03 | 56.919 | |||||||||||
Fb0180 | - | - | - | - | - | - | SI209 | ![]() ![]() | scaffold_9 | 27734482 | 27736035 | ![]() | C_unshiu_00252 | 12109 | 13626 | Hypothetical protein | RP-03 | 56.919 | ||||||||||
Mf0095 | OOthers | O | - | - | - | - | - | SI290 | ![]() ![]() | scaffold_9 | 21216748 | 21221111 | ![]() | C_unshiu_00160 | 290257 | 294371 | Transmembrane proteins 14C, putative isoform 1 | KmG-032 | JtR-031 | 11.958 | RP-03 | 43.323 | ||||||
Ov0013 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 18058387 | 18060752 | ![]() | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
Bf0229 | - | - | - | - | - | - | SI253 | ![]() ![]() | scaffold_9 | 17242218 | 17245901 | ![]() | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
Bf0221 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24195180 | 24198282 | ![]() | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
Bf0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25185200 | 25188839 | ![]() | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | ![]() ![]() | scaffold_9 | 25073693 | 25080376 | ![]() | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | ![]() ![]() | scaffold_9 | 7579900 | 7583093 | ![]() | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
Bf0125 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15764937 | 15766976 | ![]() | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | NAT-03 | 8.920 | RP-03 | 31.431 | |||||||||
Lp0041 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_9 | 6354796 | 6356630 | ![]() | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | KmG-032 | 17.549 | JtR-031 | 14.643 | RP-03 | 29.608 | ||||||
Fb0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3771162 | 3771725 | ![]() | C_unshiu_00254 | 237120 | 239518 | Heat shock 22 kDa protein | RP-03 | 21.444 | |||||||||||
Al0234 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1372972 | 1374927 | ![]() | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
Fb0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1169260 | 1172055 | ![]() | C_unshiu_00007 | 6589 | 14596 | Two-component response regulator ARR12-like protein | RP-03 | 1.143 | |||||||||||
Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
Fb0227 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2938059 | 2940407 | ![]() | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
Bf0204 | - | - | - | - | - | - | SI326 | ![]() ![]() | scaffold_7 | 3222483 | 3228894 | ![]() | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | RP-02.2 | 9.835 | ||||||||||
Bf0128 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3323269 | 3331038 | ![]() | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
Gn0068 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3222483 | 3228894 | ![]() | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | AGI-02 | 68.446 | RP-02.2 | 9.814 | |||||||||
Ov0116 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3193875 | 3196468 | ![]() | C_unshiu_00342 | 154980 | 164222 | Hypothetical protein | KmG-02 | 53.208 | JtR-02 | 27.051 | RP-02.2 | 5.192 | |||||||
Lp0126 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3946818 | 3949964 | ![]() | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | ![]() ![]() | scaffold_2 | 290799 | 294122 | ![]() | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
Lp0004 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15376818 | 15378771 | ![]() | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
Mf0090 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
Lp0140 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32629908 | 32634194 | ![]() | C_unshiu_00070 | 393864 | 397918 | Universal stress protein A-like protein | KmG-02 | 12.229 | JtR-02 | 2.765 | RP-02 | 8.172 | ||||||
Vt0032 | O | - | - | - | - | - | SI024 | ![]() ![]() | scaffold_7 | 17901487 | 17905433 | ![]() | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
Bf0033 | - | - | - | - | - | - | SI356,SI379 | ![]() ![]() | scaffold_1 | 27204998 | 27211059 | ![]() | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
Al0407 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 26576059 | 26578193 | ![]() | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | ![]() ![]() | scaffold_1 | 25592494 | 25593617 | ![]() | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
Fb0143 | - | - | - | - | - | - | SI361 | ![]() ![]() | scaffold_1 | 25283807 | 25291472 | ![]() | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
Bf0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21082902 | 21086082 | ![]() | C_unshiu_00487 | 113166 | 115416 | Thiazole biosynthetic enzyme | AGI-01 | 43.164 | RP-01 | 56.137 | |||||||||
Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | ![]() ![]() | scaffold_1 | 23776796 | 23782088 | ![]() | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
Bf0013 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23111733 | 23116067 | No | AGI-01 | RP-01 | 47.360 | ||||||||||||||
Bf0036 | AAvailable marker | O | O | - | O | O | O | ![]() ![]() | scaffold_1 | 22840947 | 22844111 | ![]() | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
Al0639 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 41703787 | 41708779 | ![]() | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
Lp0211 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ![]() | C_unshiu_00066 | 279404 | 280861 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 | AGI-01 | 30.175 | RP-01 | 24.533 | |||||||||
Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | ![]() ![]() | scaffold_1 | 4722889 | 4726339 | ![]() | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | ![]() ![]() | scaffold_1 | 1070373 | 1072218 | ![]() | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
Tf0226 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_1 | 526813 | 529150 | ![]() | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
Al0630 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_1 | 487184 | 489198 | ![]() | C_unshiu_00129 | 342865 | 344872 | Kelch repeat-containing F-box family protein | RP-01 | 1.092 | ||||||||||
Tf0176 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | RP-01 | ||||||||||||
Af1255 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28061221 | 28063450 | ||||||||||||||||||
Af1520 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7360380 | 7367946 | ||||||||||||||||||
Al0215 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21918726 | 21922966 | ![]() | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
Bf0180 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Cp1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1537835 | 1540818 | ||||||||||||||||||
Fb0346 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Ov0129 | Ov0129.k | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2717014 | 2719856 | |||||||||||||||||
Tf0166 | - | - | - | - | - | - | SI156 | ![]() ![]() | scaffold_5 | 19682579 | 19686163 | ![]() | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
Tf0442 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23158292 | 23161424 | ||||||||||||||||||
Af0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25190682 | 25192326 | ||||||||||||||||||
Af1256 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 940514 | 942972 | ||||||||||||||||||
Af1521 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9799746 | 9804461 | ||||||||||||||||||
Al0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7359982 | 7369305 | ||||||||||||||||||
Bf0182 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 17831333 | 17834889 | ![]() | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
Cp1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20024370 | 20027538 | ||||||||||||||||||
Fb0357 | O | - | - | - | - | - | SI384 | ![]() ![]() | scaffold_5 | 40550222 | 40554434 | ![]() | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
Lp0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ||||||||||||||||||
Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | ![]() ![]() | scaffold_4 | 17143350 | 17147918 | ![]() | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
Tf0443 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 5886744 | 5892919 | ||||||||||||||||||
Af0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9468245 | 9468907 | ||||||||||||||||||
Af1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25059045 | 25061910 | ||||||||||||||||||
Af1522 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1507804 | 1510299 | ||||||||||||||||||
Al0217 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI350 | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | No | KmG-05S | JtR-05 | 25.182 | ||||||||||||
Bf0183 | O | - | - | - | - | - | SI308 | ![]() ![]() | scaffold_9 | 5254416 | 5256826 | ![]() | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
Cp1067 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 188504 | 192741 | ||||||||||||||||||
Lp0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3323209 | 3331825 | ||||||||||||||||||
Ov0302 | Ov0301.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | ![]() ![]() | scaffold_1 | 24898769 | 24905716 | ![]() | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
Tf0444 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 10574673 | 10578797 | ||||||||||||||||||
Af0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11373565 | 11374539 | ||||||||||||||||||
Af1258 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24591409 | 24594117 | ||||||||||||||||||
Af1523 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6231492 | 6235447 | ||||||||||||||||||
Al0218.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | ||||||||||||||||||
Bf0184 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24893551 | 24898675 | ![]() | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
Cp1081 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7826603 | 7829404 | ||||||||||||||||||
Fb0365 | O | - | - | - | - | - | SI036,SI320 | ![]() ![]() | scaffold_7 | 20872462 | 20874659 | ![]() | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
Lp0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14967254 | 14971449 | ||||||||||||||||||
Ov0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25160851 | 25164999 | ||||||||||||||||||
Tf0169 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2284484 | 2302268 | ||||||||||||||||||
Tf0445 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6065092 | 6068908 | ||||||||||||||||||
Af0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8447414 | 8453714 | ![]() | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
Af1259 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15528851 | 15538252 | ||||||||||||||||||
Af1524 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9325319 | 9327565 | ||||||||||||||||||
Al0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 793820 | 798369 | ||||||||||||||||||
Cp1084 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
Fb0369 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7792188 | 7795727 | ![]() | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
Lp0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22362548 | 22366644 | ||||||||||||||||||
Ov0304 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6482366 | 6484923 | ||||||||||||||||||
Tf0170 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ||||||||||||||||||
Tf0446 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42990251 | 42995979 | ||||||||||||||||||
Af0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ||||||||||||||||||
Af1260 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38869666 | 38875561 | ||||||||||||||||||
Af1525 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Al0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3683537 | 3688814 | ||||||||||||||||||
Cp1085 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ![]() | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
Fb0372 | - | - | - | - | - | - | SI343,SI052 | ![]() ![]() | scaffold_5 | 35123213 | 35124730 | ![]() | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
Lp0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 329518 | 331024 | ||||||||||||||||||
Tf0171 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25466629 | 25472365 | ||||||||||||||||||
Tf0447 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Af0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36883103 | 36887975 | ||||||||||||||||||
Af1261 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20321003 | 20329872 | ||||||||||||||||||
Af1526 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38852547 | 38855263 | ||||||||||||||||||
Al0221 | - | - | - | - | - | - | ||||||||||||||||||||||
Bf0195 | - | - | - | - | - | - | SI369 | ![]() ![]() | scaffold_5 | 31069237 | 31075092 | ![]() | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
Cp1086 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ||||||||||||||||||
Lp0030 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23185703 | 23187916 | ||||||||||||||||||
Ov0306 | OOthers | - | - | - | - | - | - | SI382 | ![]() ![]() | scaffold_7 | 224443 | 227133 | No | AGI-02 | 79.663 | KmG-02 | 72.516 | JtR-02 | 8.671 | NAT-02S | 60.000 | |||||||
Tf0172 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9976621 | 9980176 | ![]() | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
Tf0448 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254049 | ||||||||||||||||||
Af0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17014582 | 17026325 | ||||||||||||||||||
Af1262 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28424576 | 28427136 | ||||||||||||||||||
Af1527 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17175041 | 17177917 | ||||||||||||||||||
Al0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30607996 | 30610863 | ||||||||||||||||||
Bf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5654376 | 5658039 | ||||||||||||||||||
Cp1093 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16696979 | 16699623 | ||||||||||||||||||
Fb0374 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6777322 | 6781162 | ||||||||||||||||||
Lp0031 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22261408 | 22266208 | ![]() | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
Ov0307 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4937047 | 4940138 | |||||||||||||||||
Tf0449 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28254307 | 28257305 | ![]() | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
Af0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32749064 | 32749699 | ||||||||||||||||||
Af1263 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28494348 | 28496251 | ||||||||||||||||||
Af1528 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1676368 | 1677018 | ||||||||||||||||||
Bf0200 | OOthers | - | - | - | - | - | - | SI335 | ![]() ![]() | scaffold_2 | 29022433 | 29030724 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8603450 | 8610239 | ![]() | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
Fb0389 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 25179668 | 25188103 | ![]() | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | ![]() | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
Ov0308 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16730150 | 16735004 | ||||||||||||||||||
Tf0175 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 5054551 | 5056146 | ||||||||||||||||||
Tf0450 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Af0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50406028 | 50412944 | ||||||||||||||||||
Af1264 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18539347 | 18543298 | ||||||||||||||||||
Af1529 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21228791 | 21231253 | ||||||||||||||||||
Bf0201 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29370560 | 29376244 | ||||||||||||||||||
Cp1113 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 987368 | 992630 | ||||||||||||||||||
Fb0423 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 867235 | 871452 | ||||||||||||||||||
Lp0033 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30923398 | 30926574 | ||||||||||||||||||
Ov0309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8078609 | 8083078 | ||||||||||||||||||
Tf0451 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Af0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40297492 | 40299711 | ||||||||||||||||||
Af1265 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22789104 | 22792252 | ||||||||||||||||||
Af1530 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Al0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41093725 | 41097411 | ![]() | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
Cp1114 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 870926 | 875408 | ||||||||||||||||||
Fb0478 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 14592248 | 14596429 | ![]() | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
Ov0310 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48463395 | 48465325 | ![]() | C_unshiu_00026 | 334715 | 336716 | Lanatoside 15-O-acetylesterase | KmG-01 | 21.291 | JtR-01S | 61.287 | |||||||||
Tf0177 | - | - | - | - | - | - | SI133 | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | ||||||||||||
Tf0452 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Af0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11357990 | 11362560 | ||||||||||||||||||
Af1266 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8400378 | 8404853 | ||||||||||||||||||
Af1531 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4984340 | 4987674 | ||||||||||||||||||
Al0226 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2571941 | 2573984 | ||||||||||||||||||
Bf0203 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42410482 | 42413511 | ||||||||||||||||||
Cp1115 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 729077 | 730936 | ||||||||||||||||||
Fb0708 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243737 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
Lp0035 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27259813 | 27263097 | ||||||||||||||||||
Ov0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 18341166 | 18342395 | ![]() | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
Tf0178 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7232959 | 7238380 | ||||||||||||||||||
Tf0454 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 16108723 | 16113463 | ![]() | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
Af0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2458793 | 2459573 | ||||||||||||||||||
Af1267 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1465301 | 1468225 | ||||||||||||||||||
Af1532 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3988366 | 3989679 | ||||||||||||||||||
Al0227 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42217935 | 42222257 | ||||||||||||||||||
Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39858531 | 39862402 | ![]() | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
Fb0722 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16098039 | 16100795 | ||||||||||||||||||
Lp0036 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12998055 | 13001834 | ||||||||||||||||||
Tf0181 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Tf0455 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9338651 | 9341271 | ![]() | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
Af0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 13416061 | 13417219 | ||||||||||||||||||
Af1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22523213 | 22529556 | ||||||||||||||||||
Af1533 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22118203 | 22120791 | ||||||||||||||||||
Al0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 26206063 | 26208427 | ![]() | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
Bf0205 | O | - | - | - | - | - | SI236 | ![]() ![]() | scaffold_7 | 3541924 | 3543863 | ![]() | C_unshiu_00301 | 55570 | 57462 | WRKY | ||||||||||||
Cp1144 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2649991 | 2655756 | ![]() | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
Fb0827 | O | - | - | - | - | - | SI215,SI301 | ![]() ![]() | scaffold_9 | 2353442 | 2357780 | ![]() | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
Lp0037 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18963487 | 18968140 | |||||||||||||||||
Ov0313 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41844984 | 41847835 | ![]() | C_unshiu_00009 | 1013478 | 1016014 | Diphthine synthase | KmG-09 | 79.072 | ||||||||||
Tf0183 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 30873886 | 30877367 | ||||||||||||||||||
Tf0456 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44858333 | 44862278 | ||||||||||||||||||
Af0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 253879 | 254627 | ||||||||||||||||||
Af1269 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27043124 | 27045483 | ||||||||||||||||||
Af1534 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 883603 | 885249 | ||||||||||||||||||
Al0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49675354 | 49684423 | ||||||||||||||||||
Bf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22005783 | 22011411 | ||||||||||||||||||
Fb0995 | OOthers | O | - | - | - | - | - | SI026 | ![]() ![]() | scaffold_7 | 1180019 | 1202408 | ![]() | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
Lp0038 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6686602 | 6688894 | ||||||||||||||||||
Tf0184 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45393857 | 45398298 | ![]() | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
Vs0001 | - | - | - | - | - | - | ||||||||||||||||||||||
Af0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44021779 | 44027536 | ![]() | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
Af1270 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17589895 | 17593051 | ||||||||||||||||||
Af1535 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23814115 | 23817728 | ||||||||||||||||||
Al0230 | - | - | - | - | - | - | ||||||||||||||||||||||
Bf0212 | - | - | - | - | - | - | SI332 | ![]() ![]() | scaffold_2 | 9206686 | 9211152 | ![]() | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
Cp1163 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16201971 | 16207283 | ||||||||||||||||||
Fb1121 | Fb1121.lg | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22635764 | 22640239 | |||||||||||||||||
Lp0039 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22309970 | 22314448 | ||||||||||||||||||
Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23430375 | 23436161 | ![]() | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
Tf0185 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | ![]() ![]() | scaffold_5 | 41184180 | 41190033 | ![]() | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
Af0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 25074163 | 25075916 | ![]() | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
Af1271 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13323583 | 13328683 | ||||||||||||||||||
Af1536 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6113049 | 6116055 | ||||||||||||||||||
Cp1177 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 4116356 | 4117315 | ||||||||||||||||||
Fb1134.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 9547707 | 9559498 | ![]() | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
Lp0040 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3674156 | 3676384 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | KmG-02 | 52.181 | JtR-02 | 25.334 | ||||||||
Ov0316 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | JtR-05 | 31.749 | |||||||||||
Tf0186 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5382490 | 5385009 | ||||||||||||||||||
Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | ![]() | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
Af0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 313112 | 317158 | ||||||||||||||||||
Af1272 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24796351 | 24800588 | ||||||||||||||||||
Af1537 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8417158 | 8419377 | ||||||||||||||||||
Al0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4997089 | 4999255 | ||||||||||||||||||
Bf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50793520 | 50795340 | ||||||||||||||||||
Cp1184 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 17809957 | 17817998 | ||||||||||||||||||
Fb1170 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23829862 | 23832918 | ||||||||||||||||||
Ov0317 | Ov0316.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | |||||||||||||||||
Tf0187 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Vs0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2078691 | 2083111 | ![]() | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
Af0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40691801 | 40694522 | ||||||||||||||||||
Af1273 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12214029 | 12215007 | ||||||||||||||||||
Af1538 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33921984 | 33926087 | ||||||||||||||||||
Bf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15058920 | 15066775 | ||||||||||||||||||
Cp1196 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19626061 | 19629792 | ||||||||||||||||||
Fb1227 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3367718 | 3376062 | ![]() | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
Lp0042 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21342050 | 21345004 | ||||||||||||||||||
Ov0318 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19405285 | 19407278 | ![]() | C_unshiu_00273 | 103250 | 105183 | 40S ribosomal protein S5 | ||||||||||||
Tf0188 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15774976 | 15777653 | ||||||||||||||||||
Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | ![]() ![]() | scaffold_2 | 33216839 | 33219042 | ![]() | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
Af1003 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15605852 | 15610028 | ![]() | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
Af1274 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3152548 | 3153983 | ||||||||||||||||||
Af1539 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10097308 | 10100347 | ||||||||||||||||||
Al0235 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ||||||||||||||||||
Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
Fb1430 | Fb1430.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1879675 | 1880523 | ![]() | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
Lp0043 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35334245 | 35336841 | |||||||||||||||||
Ov0319 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ![]() | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | KmG-032 | 19.158 | |||||||||||
Tf0189 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21379384 | 21385293 | ||||||||||||||||||
Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 19024295 | 19026021 | ![]() | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
Af1004 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24426760 | 24434342 | ||||||||||||||||||
Af1275 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 13035174 | 13037307 | ||||||||||||||||||
Af1540 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 477388 | 478920 | ||||||||||||||||||
Al0236 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32806565 | 32812384 | ||||||||||||||||||
Bf0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24851462 | 24854925 | ||||||||||||||||||
Cp1201 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19416844 | 19420948 | ||||||||||||||||||
Fb1505 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0044 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23618424 | 23622719 | ||||||||||||||||||
Tf0191 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5821401 | 5825173 | ||||||||||||||||||
Vs0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Af1005 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20715590 | 20719704 | ||||||||||||||||||
Af1276 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7080222 | 7081373 | ||||||||||||||||||
Af1541 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 10510018 | 10517939 | ||||||||||||||||||
Al0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5523075 | 5524475 | ||||||||||||||||||
Cp1213 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11598999 | 11601307 | ||||||||||||||||||
Fb1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50637673 | 50640392 | No | AGI-05 | 103.212 | |||||||||||||||
Lp0045 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0321 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42776479 | 42784038 | ||||||||||||||||||
Tf0193 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27167271 | 27171073 | ||||||||||||||||||
Vs0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 947943 | 949892 | ||||||||||||||||||
Af1006 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24661109 | 24664797 | ||||||||||||||||||
Af1277 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23811511 | 23814763 | ||||||||||||||||||
Af1542 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10424779 | 10427904 | ||||||||||||||||||
Al0238 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8494369 | 8496454 | ||||||||||||||||||
Bf0224 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22244924 | 22252231 | ||||||||||||||||||
Cp1216 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 12112790 | 12113903 | ![]() | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
Fb1611 | - | - | - | - | - | - | SI071 | ![]() ![]() | scaffold_2 | 27030188 | 27034752 | No | ||||||||||||||||
Lp0046 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24274031 | 24276658 | ||||||||||||||||||
Tf0194 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42996886 | 43001548 | ||||||||||||||||||
Vs0009 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12814731 | 12817148 | ||||||||||||||||||
Af1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6903804 | 6908960 | ||||||||||||||||||
Af1543 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42180650 | 42183843 | ||||||||||||||||||
Al0239 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16185818 | 16187223 | ![]() | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | ||||||||||||
Bf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 3460370 | 3462174 | ||||||||||||||||||
Cp1221 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 13627656 | 13629444 | ||||||||||||||||||
Fb1678 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6000266 | 6002833 | ![]() | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
Lp0047 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0323 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5549195 | 5553148 | ||||||||||||||||||
Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 67997 | 74191 | ![]() | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
Vs0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1008 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2470085 | 2471703 | ||||||||||||||||||
Af1279 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14510787 | 14516311 | ||||||||||||||||||
Af1544 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2622969 | 2624754 | ||||||||||||||||||
Al0240 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 8033465 | 8038415 | ![]() | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23654785 | 23658857 | ![]() | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
Cp1223 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50559205 | 50563745 | ||||||||||||||||||
Fb1685 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ||||||||||||||||||
Lp0048 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46374292 | 46377587 | ||||||||||||||||||
Ov0324 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_8 | 22575845 | 22578398 | ![]() | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
Tf0196 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7796591 | 7799786 | ![]() | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
Vs0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1009 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35818327 | 35822366 | ||||||||||||||||||
Af1281 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20366637 | 20367616 | ||||||||||||||||||
Af1545 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2153718 | 2155194 | ||||||||||||||||||
Al0241 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17857849 | 17860063 | ||||||||||||||||||
Cp1224 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ||||||||||||||||||
Fb1751 | - | - | - | - | - | - | SI264 | ![]() ![]() | scaffold_7 | 7977527 | 7984425 | ![]() | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
Lp0049 | Lp0049.k | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50736750 | 50739959 | |||||||||||||||||
Ov0325 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35180594 | 35182774 | ![]() | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
Tf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14804828 | 14808139 | ||||||||||||||||||
Vs0012 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | |||||||||||||||||||||
Af1010 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31656510 | 31666206 | ||||||||||||||||||
Af1282 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1546 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 12406078 | 12408794 | ||||||||||||||||||
Al0242 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3437577 | 3441367 | ||||||||||||||||||
Cp1225 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 17208075 | 17211871 | ||||||||||||||||||
Lp0101 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15991108 | 15996585 | ||||||||||||||||||
Ov0326 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21522433 | 21525218 | ||||||||||||||||||
Tf0198 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | ||||||||||||
Vs0013 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29757723 | 29762309 | ||||||||||||||||||
Af1547 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3864764 | 3867933 | ||||||||||||||||||
Al0243 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Cp1252 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 30617746 | 30629437 | ||||||||||||||||||
Tf0199 | - | - | - | - | - | - | SI023,SI157 | ![]() ![]() | scaffold_5 | 30994812 | 30999834 | ![]() | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
Af1012 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16270394 | 16272027 | ||||||||||||||||||
Af1285 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 12807597 | 12808725 | ||||||||||||||||||
Af1548 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25114213 | 25116604 | ||||||||||||||||||
Al0244 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9849133 | 9852098 | ||||||||||||||||||
Bf0401 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 37906090 | 37910975 | ||||||||||||||||||
Cp1254 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Fb2130 | - | - | - | - | - | - | SI069,SI117 | ![]() ![]() | scaffold_8 | 24341129 | 24344795 | ![]() | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
Ov0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 9847502 | 9854667 | ||||||||||||||||||
Tf0200 | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21095569 | 21102194 | ||||||||||||||||||
Vs0015 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
Af1013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48621909 | 48624876 | ||||||||||||||||||
Af1286 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1549 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2184513 | 2186967 | ||||||||||||||||||
Al0245 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25185200 | 25188839 | ||||||||||||||||||
Bf0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9137249 | 9144663 | ![]() | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
Cp1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5582927 | 5587253 | ||||||||||||||||||
Fb2156 | Fb2156.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ![]() | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
Lp0104 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27579627 | 27581411 | ||||||||||||||||||
Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ![]() | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
Tf0201 | O | - | - | - | - | - | SI195 | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
Af1014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43594638 | 43605172 | ||||||||||||||||||
Af1287 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39601128 | 39604586 | ||||||||||||||||||
Af1551 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6494973 | 6502196 | ||||||||||||||||||
Al0246 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44215333 | 44220917 | ||||||||||||||||||
Bf0403 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7983788 | 7991526 | ![]() | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | ![]() ![]() | scaffold_7 | 815904 | 817239 | ![]() | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
Tf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Vs0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6647158 | 6649599 | ||||||||||||||||||
Af1016 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2394471 | 2397293 | ||||||||||||||||||
Af1288 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35803512 | 35805985 | ||||||||||||||||||
Af1552 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30527060 | 30531535 | ||||||||||||||||||
Al0247 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2227827 | 2230752 | ![]() | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
Bf0404 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7327436 | 7329167 | ![]() | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
Gmom01 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33273053 | 33276013 | ||||||||||||||||||
Lp0106 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22868978 | 22880751 | ||||||||||||||||||
Ov0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18406856 | 18412391 | ||||||||||||||||||
Tf0203 | - | - | - | - | - | - | SI121 | ![]() ![]() | scaffold_2 | 10459593 | 10472483 | ![]() | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
Vs0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4612887 | 4617115 | ||||||||||||||||||
Af1017 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22671554 | 22672639 | No | AGI-03 | 46.274 | |||||||||||||||
Af1289 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 4289876 | 4293681 | ||||||||||||||||||
Af1553 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45812589 | 45815067 | ||||||||||||||||||
Al0248 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19779795 | 19784134 | ||||||||||||||||||
Bf0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2994525 | 3001770 | ||||||||||||||||||
Cp1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12263755 | 12266130 | ||||||||||||||||||
Gmom02 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4367068 | 4371625 | ||||||||||||||||||
Lp0107 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21916592 | 21922770 | ||||||||||||||||||
Ov0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5159995 | 5165972 | ||||||||||||||||||
Tf0204 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23589702 | 23593390 | ||||||||||||||||||
Vt0001 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35624935 | 35628855 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
Af1019 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 192512 | 196670 | ||||||||||||||||||
Af1290 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24413157 | 24415621 | ||||||||||||||||||
Af1554 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23753759 | 23756754 | ![]() | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
Al0249 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30490331 | 30496586 | ||||||||||||||||||
Bf0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15773091 | 15776242 | ||||||||||||||||||
Cp1279 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12900777 | 12903692 | ![]() | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
Gmom03 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1864604 | 1871328 | ![]() | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
Lp0108 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_7 | 5554619 | 5556993 | ![]() | C_unshiu_00761 | 18704 | 21072 | 40S ribosomal protein S6 | KmG-02 | 41.508 | JtR-02 | 18.351 | ||||||||
Tf0205 | OOthers | O | - | - | - | - | - | SI274 | ![]() ![]() | scaffold_9 | 16383851 | 16393557 | ![]() | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
Vt0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 20868750 | 20872170 | ||||||||||||||||||
Af1021 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40664635 | 40665640 | ||||||||||||||||||
Af1291 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4779400 | 4780310 | ||||||||||||||||||
Af1555 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24502070 | 24504031 | ||||||||||||||||||
Al0250 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24770754 | 24773948 | ||||||||||||||||||
Bf0407 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10729034 | 10731466 | ||||||||||||||||||
Cp1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34891100 | 34894176 | ||||||||||||||||||
Gmom04 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
Lp0109 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 17561127 | 17562695 | |||||||||||||||||
Tf0206 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23161294 | 23166939 | ||||||||||||||||||
Vt0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 8153660 | 8174407 | ![]() | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Af1022 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8486491 | 8488997 | ||||||||||||||||||
Af1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6677314 | 6680214 | ||||||||||||||||||
Af1556 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11107041 | 11109191 | ![]() | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
Al0251 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6695171 | 6697430 | ||||||||||||||||||
Bf0408 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4843157 | 4848614 | ||||||||||||||||||
Cp1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2246732 | 2249558 | ||||||||||||||||||
Gmom05 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 33722934 | 33727855 | ||||||||||||||||||
Lp0110 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24271753 | 24272644 | ||||||||||||||||||
Ov0409 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4736047 | 4740432 | ||||||||||||||||||
Tf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9008920 | 9021876 | ||||||||||||||||||
Vt0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9805899 | 9809222 | ||||||||||||||||||
Af1023 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2719654 | 2725331 | ||||||||||||||||||
Af1293 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 16597796 | 16602257 | ||||||||||||||||||
Af1558 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29608462 | 29612474 | ||||||||||||||||||
Al0252 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24689989 | 24692884 | ||||||||||||||||||
Bf0409 | - | - | - | - | - | - | ![]() | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
Cp1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 7407834 | 7414015 | ||||||||||||||||||
Gmom06 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2067586 | 2073007 | ||||||||||||||||||
Lp0111 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 36096009 | 36099799 | ||||||||||||||||||
Ov0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41005054 | 41009065 | ||||||||||||||||||
Tf0208 | - | - | - | - | - | - | SI181 | ![]() ![]() | scaffold_6 | 23593516 | 23595492 | ![]() | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
Vt0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36449346 | 36452178 | ||||||||||||||||||
Af1024 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35841859 | 35844177 | ||||||||||||||||||
Af1294 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ||||||||||||||||||
Af1559 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2211862 | 2215512 | ||||||||||||||||||
Al0256 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19538138 | 19541255 | ||||||||||||||||||
Bf0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32917826 | 32924241 | ||||||||||||||||||
Cp1308 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_6 | 6329421 | 6335005 | ![]() | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
Gmom07 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7248627 | 7253007 | ||||||||||||||||||
Ov0411 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23410636 | 23414246 | ||||||||||||||||||
Tf0209 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35642412 | 35646764 | ||||||||||||||||||
Vt0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24914885 | 24923422 | ||||||||||||||||||
Af1025 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48337105 | 48339028 | ||||||||||||||||||
Af1295 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3468083 | 3477274 | ||||||||||||||||||
Af1560 | - | - | - | - | - | - | ||||||||||||||||||||||
Al0257 | Al0257.k | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22407412 | 22409529 | |||||||||||||||||
Bf0411 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21869065 | 21874083 | ![]() | C_unshiu_00500 | 128482 | 133656 | Sulfotransferase | ||||||||||||
Cp1323 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17992563 | 17993671 | ||||||||||||||||||
Gmom08 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0113 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24480591 | 24484723 | ||||||||||||||||||
Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | ![]() ![]() | scaffold_2 | 31036088 | 31038222 | ![]() | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
Tf0210 | - | - | - | - | - | - | SI183 | ![]() ![]() | scaffold_9 | 11993282 | 11999324 | ![]() | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
Vt0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49821906 | 49825730 | ||||||||||||||||||
Af1296 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19133592 | 19137895 | ||||||||||||||||||
Af1561 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2420324 | 2423040 | ||||||||||||||||||
Al0301 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45906879 | 45907641 | ||||||||||||||||||
Bf0412 | - | - | - | - | - | - | No | AGI-08 | 29.534 | |||||||||||||||||||
Cp1330 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 14898168 | 14903449 | ||||||||||||||||||
Gmom09 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0114 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28623624 | 28626008 | ||||||||||||||||||
Ov0413 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ![]() | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
Tf0211 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28607325 | 28610917 | ||||||||||||||||||
Vt0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49256390 | 49259083 | ||||||||||||||||||
Af1027 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2946301 | 2950297 | ||||||||||||||||||
Af1297 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23311867 | 23313814 | ||||||||||||||||||
Af1562 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 548048 | 549062 | ||||||||||||||||||
Bf0413 | - | - | - | - | - | - | ![]() | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
Gmom11 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 680835 | 684433 | ||||||||||||||||||
Lp0115 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ||||||||||||||||||
Ov0414 | Ov0413.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | |||||||||||||||||
Tf0212 | - | - | - | - | - | - | SI196 | ![]() ![]() | scaffold_4 | 19816800 | 19825304 | ![]() | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
Vt0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24932481 | 24935909 | ![]() | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
Af1028 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42113621 | 42120391 | ||||||||||||||||||
Af1298 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2037273 | 2040825 | ||||||||||||||||||
Af1562b | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1530713 | 1532413 | ||||||||||||||||||
Al0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24431064 | 24433341 | ||||||||||||||||||
Bf0414 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7719550 | 7723396 | ||||||||||||||||||
Cp1336 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ||||||||||||||||||
Gmom12 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25604509 | 25605857 | ||||||||||||||||||
Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19397294 | 19398741 | ![]() | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
Ov0415 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2339077 | 2341173 | ||||||||||||||||||
Tf0213 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18839546 | 18848948 | ![]() | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
Vt0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48560245 | 48562027 | ||||||||||||||||||
Af1029 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2110308 | 2113166 | ||||||||||||||||||
Af1299 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27638163 | 27639131 | ||||||||||||||||||
Af1564 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26206635 | 26210648 | ||||||||||||||||||
Bf0415 | - | - | - | - | - | - | ![]() | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
Cp1340 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 125954 | 131376 | ||||||||||||||||||
Gmom13 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 13223034 | 13225922 | ![]() | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
Lp0117 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 28815314 | 28816638 | ||||||||||||||||||
Ov0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24807948 | 24823388 | ||||||||||||||||||
Tf0214 | - | - | - | - | - | - | SI020 | ![]() ![]() | scaffold_3 | 50133837 | 50139049 | ![]() | C_unshiu_00014 | 458017 | 462942 | Transcription factor UNE10 | ||||||||||||
Vt0011 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 12984411 | 12986574 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
Af1030 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3930788 | 3932748 | ||||||||||||||||||
Af1300 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8539647 | 8542949 | ||||||||||||||||||
Af1565 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21875022 | 21879839 | ||||||||||||||||||
Al0305 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47200055 | 47201893 | ||||||||||||||||||
Bf0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ||||||||||||||||||
Cp1352 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8198787 | 8204052 | ||||||||||||||||||
Gmom15 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
Ov0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 851900 | 857695 | ||||||||||||||||||
Tf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 43036925 | 43044008 | ||||||||||||||||||
Vt0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1806179 | 1809814 | ||||||||||||||||||
Af1031 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 718488 | 722516 | ![]() | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
Af1301 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 866845 | 870030 | ||||||||||||||||||
Af1566 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15346135 | 15348332 | ||||||||||||||||||
Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | ![]() | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
Bf0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 693215 | 695933 | ||||||||||||||||||
Cp1361 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 21714716 | 21717652 | ![]() | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
Gmom16 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | ![]() ![]() | scaffold_8 | 24315720 | 24317671 | ![]() | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
Ov0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11863906 | 11865549 | ||||||||||||||||||
Tf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29413143 | 29414562 | ||||||||||||||||||
Vt0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 13123280 | 13126173 | ||||||||||||||||||
Af1032 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8377489 | 8379348 | ||||||||||||||||||
Af1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14457766 | 14462726 | ||||||||||||||||||
Af1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22759341 | 22763218 | ||||||||||||||||||
Al0307 | Al0307.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | |||||||||||||||||
Bf0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38489257 | 38490776 | ||||||||||||||||||
Cp1362 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ||||||||||||||||||
Gmom17 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ||||||||||||||||||
Lp0120 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Tf0217 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34910794 | 34916593 | ||||||||||||||||||
Vt0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21102979 | 21105476 | ||||||||||||||||||
Af1033 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10456899 | 10459385 | ||||||||||||||||||
Af1303 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22810929 | 22812161 | ||||||||||||||||||
Af1568 | - | - | - | - | - | - | ![]() | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
Al0308 | - | - | - | - | - | - | SI045 | ![]() ![]() | scaffold_8 | 24521116 | 24524868 | ![]() | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
Bf0419 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 8696694 | 8697639 | ||||||||||||||||||
Cp1366 | AAvailable marker | - | - | - | - | - | O | |||||||||||||||||||||
Gmom19 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21450811 | 21454133 | ![]() | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
Lp0121 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 34829300 | 34831997 | ||||||||||||||||||
Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | ![]() | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
Tf0218 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31489811 | 31497594 | ||||||||||||||||||
Vt0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2441452 | 2443391 | ![]() | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
Af1034 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Af1304 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2210485 | 2215202 | ||||||||||||||||||
Af1569 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23192472 | 23198396 | ||||||||||||||||||
Bf1176 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24312108 | 24313141 | ||||||||||||||||||
Cp1369 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24737050 | 24741836 | ||||||||||||||||||
Gmom22 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
Ov0421 | Ov0420.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | |||||||||||||||||
Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
Vt0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17974828 | 17979364 | ||||||||||||||||||
Af1035 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23469184 | 23472872 | ||||||||||||||||||
Af1305 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19760077 | 19761961 | ||||||||||||||||||
Af1570 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4601588 | 4603705 | ||||||||||||||||||
Al0310 | Al0309.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | |||||||||||||||||
Bf1181 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1405 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Gmom23 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
Lp0123 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32889614 | 32896199 | ||||||||||||||||||
Tf0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23657256 | 23657810 | ||||||||||||||||||
Vt0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23705523 | 23709604 | ||||||||||||||||||
Af1036 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7016831 | 7019863 | ![]() | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
Af1306 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28968668 | 28973736 | ||||||||||||||||||
Af1571 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24533064 | 24536628 | ||||||||||||||||||
Al0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5456336 | 5459361 | ||||||||||||||||||
Bf1182.2 | - | - | - | - | - | - | No | AGI-03 | 56.391 | |||||||||||||||||||
Cp1407 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21243085 | 21244983 | ||||||||||||||||||
Gmom24 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
Lp0124 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10087523 | 10092758 | ||||||||||||||||||
Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42954362 | 42955051 | ![]() | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
Tf0221 | - | - | - | - | - | - | SI057,SI225 | ![]() ![]() | scaffold_7 | 490750 | 492882 | ![]() | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
Vt0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22471208 | 22474774 | ||||||||||||||||||
Af1037 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1969590 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
Af1307 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5310513 | 5314498 | ||||||||||||||||||
Af1572 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22084232 | 22091205 | ||||||||||||||||||
Al0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4144939 | 4148359 | ||||||||||||||||||
Bf1185 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40993520 | 40993992 | No | AGI-09 | ||||||||||||||||
Cp1412 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47217428 | 47221472 | ||||||||||||||||||
Gmom26 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 713868 | 716708 | ![]() | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
Lp0125 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 11150758 | 11155385 | ||||||||||||||||||
Ov0424 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23480483 | 23484398 | ||||||||||||||||||
Tf0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28782169 | 28786731 | ||||||||||||||||||
Vt0019 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41913536 | 41914321 | ||||||||||||||||||
Af1038 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1308 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13625504 | 13630800 | ||||||||||||||||||
Af1573 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11163359 | 11165487 | ||||||||||||||||||
Al0313 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 23966039 | 23969583 | ![]() | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
Bf1186 | - | - | - | - | - | - | SI245 | ![]() ![]() | scaffold_6 | 21912438 | 21917736 | ![]() | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
Cp1427 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45576863 | 45579197 | ![]() | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
Gmom27 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16046322 | 16048971 | ||||||||||||||||||
Tf0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23774309 | 23780334 | ||||||||||||||||||
Vt0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1970129 | 1972842 | ||||||||||||||||||
Af1039 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14381144 | 14384897 | ||||||||||||||||||
Af1309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50647753 | 50652010 | ||||||||||||||||||
Af1574 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14444651 | 14447199 | ||||||||||||||||||
Al0314 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2574769 | 2577568 | ||||||||||||||||||
Bf1192 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 10678653 | 10684627 | ![]() | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
Cp1428 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49195569 | 49198341 | ||||||||||||||||||
Gmom28 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12596113 | 12597155 | ||||||||||||||||||
Lp0127 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21374019 | 21379609 | ||||||||||||||||||
Ov0426 | Ov0425.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | |||||||||||||||||
Tf0224 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7785328 | 7796808 | ![]() | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
Vt0021 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2015894 | 2023323 | ||||||||||||||||||
Af1040 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ||||||||||||||||||
Af1310 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 14481402 | 14484929 | ||||||||||||||||||
Af1575 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17524835 | 17526697 | ![]() | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
Al0315 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 4905341 | 4909930 | ||||||||||||||||||
Bf1198 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1436 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48720837 | 48722931 | ||||||||||||||||||
Gmom29 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 12677414 | 12680761 | ![]() | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
Lp0128 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2848884 | 2853210 | ||||||||||||||||||
Ov0427 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | ![]() | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
Tf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 36211961 | 36216858 | ||||||||||||||||||
Vt0022 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24201196 | 24203794 | ||||||||||||||||||
Af1041 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40300306 | 40304768 | ||||||||||||||||||
Af1311 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2025698 | 2028188 | ||||||||||||||||||
Af1576 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41566338 | 41572373 | No | AGI-05 | 47.986 | |||||||||||||||
Al0316 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40918148 | 40922656 | ||||||||||||||||||
Bf1204 | - | - | - | - | - | - | SI364 | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
Cp1439 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47139756 | 47144124 | ||||||||||||||||||
Gmom31 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27783419 | 27789937 | ||||||||||||||||||
Lp0129 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ||||||||||||||||||
Ov0428 | Ov0427.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | |||||||||||||||||
Vt0023 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8712236 | 8714558 | ||||||||||||||||||
Af1042 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28786444 | 28788097 | No | AGI-06 | 55.700 | |||||||||||||||
Af1312 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29022433 | 29030537 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
Af1577 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ||||||||||||||||||
Al0317 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ![]() | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
Bf1207 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22912695 | 22913798 | ![]() | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
Cp1441 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37735873 | 37744747 | ||||||||||||||||||
Gn0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12840408 | 12842940 | ||||||||||||||||||
Lp0130 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 11512415 | 11514434 | ||||||||||||||||||
Ov0429 | Ov0429.k | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 290799 | 294122 | |||||||||||||||||
Tf0227 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 21666061 | 21671693 | ![]() | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
Vt0024 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21593473 | 21597037 | ||||||||||||||||||
Af1043 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20049936 | 20052008 | ![]() | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
Af1313 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31222299 | 31225439 | ||||||||||||||||||
Af1578 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48016069 | 48017656 | ||||||||||||||||||
Al0318 | Al0318.2 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ||||||||||||||||
Bf1208 | - | - | - | - | - | - | SI108 | No | ||||||||||||||||||||
Cp1474 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37517043 | 37521275 | ||||||||||||||||||
Gn0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ![]() | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
Lp0131 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 20390517 | 20391131 | ||||||||||||||||||
Tf0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6025802 | 6031497 | ||||||||||||||||||
Vt0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6764664 | 6770188 | ||||||||||||||||||
Af1044 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16378858 | 16383103 | ||||||||||||||||||
Af1314 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38283419 | 38284959 | ||||||||||||||||||
Af1579 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 75348 | 78181 | ||||||||||||||||||
Bf1243 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24657015 | 24660141 | ![]() | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
Cp1477 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36095844 | 36099890 | ![]() | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
Gn0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Lp0132 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5469050 | 5475142 | ||||||||||||||||||
Tf0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24248767 | 24251495 | ||||||||||||||||||
Vt0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44691395 | 44694360 | ||||||||||||||||||
Af1045 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 9197774 | 9204364 | ||||||||||||||||||
Af1315 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 203839 | 207450 | ||||||||||||||||||
Af1580 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35013848 | 35015439 | ![]() | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
Al0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | ![]() | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
Bf1253 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1483 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ![]() | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
Gn0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6011523 | 6014015 | ![]() | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
Ov0503 | AtAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | ![]() | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | NAT-05 | 19.042 | ||||||||||
Tf0230 | - | - | - | - | - | - | SI140 | ![]() ![]() | scaffold_1 | 23463843 | 23470911 | ![]() | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
Vt0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 303399 | 306794 | ||||||||||||||||||
Af1046 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ||||||||||||||||||
Af1316 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 685220 | 687072 | ||||||||||||||||||
Af1581 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 27092414 | 27093612 | ||||||||||||||||||
Al0320.2 | Al0320.em | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_3 | 541575 | 543121 | ![]() | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||
Cp0001 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47576415 | 47578036 | ||||||||||||||||||
Cp1487 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | ||||||||||||||||||
Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ![]() | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
Lp0134 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24480591 | 24484723 | ||||||||||||||||||
Ov0504 | Ov0503.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | |||||||||||||||||
Tf0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6760311 | 6763833 | ||||||||||||||||||
Vt0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18947498 | 18950949 | ![]() | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
Af1047 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 16357227 | 16363309 | ![]() | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
Af1317 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 35932198 | 35935023 | ||||||||||||||||||
Af1583 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29549722 | 29551403 | ||||||||||||||||||
Al0321.2 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | |||||||||||||||||
Cp0002 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47583337 | 47586652 | ||||||||||||||||||
Cp1488 | Cp1488.1 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | |||||||||||||||||
Gn0005.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ||||||||||||||||||
Lp0135 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39412819 | 39414334 | ![]() | C_unshiu_00457 | 27521 | 28982 | Xylem serinease 1-like protein | JtR-05 | 41.854 | |||||||||||
Ov0505 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 16626338 | 16629094 | ![]() | C_unshiu_00250 | 82573 | 84397 | Tyrosine decarboxylase | KmG-07 | 53.887 | JtR-07 | 48.672 | NAT-07 | 3.814 | ||||||
Tf0232 | - | - | - | - | - | - | SI258,SI261 | ![]() ![]() | scaffold_5 | 37066208 | 37070717 | ![]() | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
Vt0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2451345 | 2454325 | ![]() | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
Af1048 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 16357227 | 16363309 | ||||||||||||||||||
Af1318 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 12549543 | 12550712 | ||||||||||||||||||
Af1584 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 17424218 | 17426071 | ||||||||||||||||||
Al0322 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34801352 | 34804440 | ||||||||||||||||||
Cp0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 11826472 | 11830875 | ||||||||||||||||||
Cp1488.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ||||||||||||||||||
Gn0006 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0136 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10500879 | 10504450 | ||||||||||||||||||
Ov0506 | Ov0505.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16626338 | 16629094 | |||||||||||||||||
Tf0233 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6772264 | 6775904 | ||||||||||||||||||
Vt0030 | Vt0030.k | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11271705 | 11277014 | ![]() | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
Af1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42879563 | 42882316 | ||||||||||||||||||
Af1320 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 34602479 | 34604518 | ||||||||||||||||||
Af1585 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3462353 | 3463444 | ||||||||||||||||||
Al0323 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18188139 | 18189060 | |||||||||||||||||
Cp0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48753307 | 48755805 | ||||||||||||||||||
Cp1489 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6577360 | 6582553 | ||||||||||||||||||
Gn0007.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 17778571 | 17785482 | ||||||||||||||||||
Lp0137 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ||||||||||||||||||
Ov0507 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 642157 | 644823 | |||||||||||||||||
Tf0234 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23476661 | 23480861 | ||||||||||||||||||
Vt0031 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1051 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 35093132 | 35106001 | ||||||||||||||||||
Af1321 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16371168 | 16375666 | ![]() | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
Af1586 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23119502 | 23122347 | ![]() | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
Cp0006 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14610897 | 14614381 | ||||||||||||||||||
Cp1490 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6369398 | 6372018 | ||||||||||||||||||
Gn0008 | OOthers | - | - | - | - | - | - | SI176 | ![]() ![]() | scaffold_9 | 17789634 | 17793258 | ![]() | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
Lp0138 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2599957 | 2603377 | ||||||||||||||||||
Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | ![]() ![]() | scaffold_4 | 17057658 | 17074755 | ![]() | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
Af1052 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 12808154 | 12820311 | ![]() | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Af1322 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41715562 | 41717774 | ||||||||||||||||||
Af1587 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39483387 | 39486219 | ||||||||||||||||||
Al0325 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp0007 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46924692 | 46927004 | |||||||||||||||||
Cp1500 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7080249 | 7086989 | ![]() | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
Gn0009 | AAvailable marker | - | - | - | - | O | O | AGI-04 | 57.369 | KmG-04 | 27.843 | |||||||||||||||||
Lp0139 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1470163 | 1473304 | ||||||||||||||||||
Tf0236 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38595158 | 38602400 | ||||||||||||||||||
Vt0033 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23695881 | 23697100 | ||||||||||||||||||
Af1053 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29206818 | 29208977 | ||||||||||||||||||
Af1324 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38189669 | 38190638 | ||||||||||||||||||
Af1588 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6750503 | 6754741 | ||||||||||||||||||
Cp0009 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46143241 | 46147293 | ||||||||||||||||||
Cp1501 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24336809 | 24337802 | ||||||||||||||||||
Gn0010 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0510 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10016564 | 10019369 | ![]() | C_unshiu_00279 | 116848 | 119657 | Phenylalanine ammonia-lyase 1 | KmG-04 | 62.284 | JtR-04 | 3.789 | ||||||||
Tf0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29392885 | 29395387 | ||||||||||||||||||
Vt0034 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39630111 | 39635609 | ||||||||||||||||||
Af1054 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2033331 | 2036879 | ||||||||||||||||||
Af1325 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6287460 | 6289468 | ||||||||||||||||||
Af1589 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30995129 | 30999295 | ![]() | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
Al0327 | Al0326.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | |||||||||||||||||
Cp0010 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45604806 | 45609651 | ||||||||||||||||||
Cp1523 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 1356758 | 1359310 | ![]() | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
Gn0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24814539 | 24819264 | ![]() | C_unshiu_00341 | 85182 | 89905 | Sucrose synthase | KmG-01 | 21.459 | |||||||||||
Lp0141 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22386727 | 22388706 | ||||||||||||||||||
Ov0511 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6101482 | 6103243 | ||||||||||||||||||
Tf0238 | - | - | - | - | - | - | SI114 | ![]() ![]() | scaffold_7 | 551893 | 553909 | ![]() | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
Vt0035 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8510712 | 8514409 | ||||||||||||||||||
Af1055 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42297979 | 42300281 | ||||||||||||||||||
Af1326 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43258339 | 43260615 | ||||||||||||||||||
Af1590 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9348292 | 9351074 | ||||||||||||||||||
Al0328 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29952005 | 29956306 | ||||||||||||||||||
Cp0012 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44442841 | 44444278 | ||||||||||||||||||
Cp1529 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4840947 | 4846859 | ||||||||||||||||||
Gn0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46011238 | 46017249 | ![]() | C_unshiu_00139 | 135708 | 141900 | Sucrose synthase | KmG-05S | 78.527 | |||||||||||
Lp0142 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2976873 | 2978308 | ||||||||||||||||||
Ov0512 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27198508 | 27199642 | ![]() | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
Tf0240 | - | - | - | - | - | - | SI184 | ![]() ![]() | scaffold_3 | 42718991 | 42733040 | ![]() | C_unshiu_00386 | 164396 | 178993 | Myosin 2 | ||||||||||||
Wy0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3564877 | 3568051 | ||||||||||||||||||
Af1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26595972 | 26598955 | ![]() | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
Af1327 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29498595 | 29499368 | ||||||||||||||||||
Af1591 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23674833 | 23676979 | ||||||||||||||||||
Cp0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44834035 | 44836704 | ||||||||||||||||||
Cp1533 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4831751 | 4834270 | ![]() | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
Gn0014.2 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29488658 | 29491181 | ![]() | C_unshiu_00056 | 144107 | 146527 | Beta-carotene hydroxylase 1 | ||||||||||||
Lp0143 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6076949 | 6080875 | ![]() | C_unshiu_00159 | 339926 | 343475 | Translation elongation factor G | AGI-05 | 45.297 | JtR-05 | 18.056 | ||||||||
Tf0241 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22106872 | 22114471 | ![]() | C_unshiu_00481 | 121975 | 128680 | Zinc finger CCCH domain-containing protein 24 | AGI-08 | 27.618 | ||||||||||
Wy0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 18472967 | 18473951 | ||||||||||||||||||
Af1057 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 12677414 | 12680761 | ||||||||||||||||||
Af1328 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39834680 | 39837971 | ||||||||||||||||||
Af1592 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 37597624 | 37600961 | ||||||||||||||||||
Al0330 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7455492 | 7457451 | ||||||||||||||||||
Cp0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 17390389 | 17391229 | ||||||||||||||||||
Cp1556 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 21432494 | 21440948 | ![]() | C_unshiu_00175 | 91338 | 99600 | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic | AGI-05 | 40.337 | ||||||||||
Gn0016 | - | - | - | - | - | - | KmG-01 | 18.088 | ||||||||||||||||||||
Lp0144 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9452114 | 9461436 | ||||||||||||||||||
Ov0514 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7436355 | 7440439 | ||||||||||||||||||
Tf0242 | - | - | - | - | - | - |