| Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
| Cp1011 | - | - | - | - | - | - |   Ciclev10016354m | scaffold_2 | 25346439 | 25350875 |  C_unshiu_00087:mRNA_55.1 | C_unshiu_00087 | 398683 | 402763 | ZZ-type zinc finger-containing 3 | AGI-09 | 115.692 | |||||||||||
| Vs0015 | OOthers | - | - | - | - | - | - | C_unshiu_00001:mRNA_84.1 | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
| Tf0304 | - | - | - | - | - | - | Ciclev10000491m | scaffold_5 | 953167 | 960232 | C_unshiu_00033:mRNA_32.1 | C_unshiu_00033 | 311804 | 317751 | Auxin response factor | AGI-09 | 113.306 | |||||||||||
| Edp005 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10000211m | scaffold_5 | 21203994 | 21212595 | C_unshiu_00020:mRNA_80.1 | C_unshiu_00020 | 742433 | 758888 | Retinoblastoma protein 2 | AGI-09 | 105.195 | RP-09 | 23.442 | ||||||||
| Tf0130 | - | - | - | - | - | - | Ciclev10001027m | scaffold_5 | 19740133 | 19745806 | C_unshiu_00050:mRNA_15.1 | C_unshiu_00050 | 195528 | 200204 | Transcription factor GAMYB | AGI-09 | 103.217 | |||||||||||
| Ov0509 | ULess informative for main cultivars | O | - | - | - | - | - | No | AGI-09 | 102.280 | RP-09 | 21.445 | ||||||||||||||||
| Tf0371 | - | - | - | - | - | - | Ciclev10002081m | scaffold_5 | 20377552 | 20384333 | C_unshiu_00913:mRNA_4.1 | C_unshiu_00913 | 37450 | 43326 | Hypothetical protein | AGI-09 | 102.280 | |||||||||||
| Tf0166 | - | - | - | - | - | - | SI156 | Ciclev10000524m | scaffold_5 | 19682579 | 19686163 | C_unshiu_00050:mRNA_13.1 | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
| Af1223 | - | - | - | - | - | - | Ciclev10009839m | scaffold_1 | 27111412 | 27114276 | C_unshiu_00347:mRNA_8.1 | C_unshiu_00347 | 66555 | 79401 | Flavin-binding kelch domain F box protein | AGI-09 | 97.668 | |||||||||||
| Tf0103 | - | - | - | - | - | - | Ciclev10002094m | scaffold_5 | 354416 | 357301 | C_unshiu_01920:mRNA_2.1 | C_unshiu_01920 | 10140 | 12134 | Putative NAC domain-containing protein 94 | AGI-09 | 93.685 | |||||||||||
| Af1437 | - | - | - | - | - | - | Ciclev10002114m | scaffold_5 | 1474396 | 1479079 | C_unshiu_00060:mRNA_37.1 | C_unshiu_00060 | 309328 | 313345 | Short-chain alcohol dehydrogenase | AGI-09 | 92.804 | |||||||||||
| Af1645 | - | - | - | - | - | - | Ciclev10000427m | scaffold_5 | 2472805 | 2477375 | C_unshiu_00127:mRNA_11.1 | C_unshiu_00127 | 52207 | 62775 | Class I (E and Q) tRNA synthetase | AGI-09 | 90.878 | |||||||||||
| Cp0419 | AAvailable marker | - | O | - | - | O | O | Ciclev10002215m | scaffold_5 | 28815314 | 28816638 | C_unshiu_00758:mRNA_1.1 | C_unshiu_00758 | 794 | 4329 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-09 | 88.739 | SA-09 | 44.226 | ||||||||
| Bf0413 | - | - | - | - | - | - | C_unshiu_00293:mRNA_16.1 | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
| Cp0065 | O | - | - | - | - | - | Ciclev10002793m | scaffold_5 | 8435123 | 8435971 | C_unshiu_01044:mRNA_2.1 | C_unshiu_01044 | 7117 | 7963 | Ferredoxin | AGI-09 | 86.996 | |||||||||||
| Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10002770m | scaffold_5 | 29463604 | 29466318 | C_unshiu_01370:mRNA_6.1 | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
| Tf0093.2 | AAvailable marker | O | - | - | - | O | O | Ciclev10002569m | scaffold_5 | 29413143 | 29414562 | C_unshiu_00110:mRNA_25.1 | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | AGI-09 | 86.512 | ||||||||||
| Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | Ciclev10002290m | scaffold_5 | 29400846 | 29403554 | C_unshiu_00110:mRNA_26.1 | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
| Cp0747 | - | - | - | - | - | - | Ciclev10015418m | scaffold_2 | 11084960 | 11088767 | C_unshiu_00184:mRNA_32.1 | C_unshiu_00184 | 282295 | 285277 | ATP synthase protein I | AGI-09 | 85.816 | |||||||||||
| Fb0373 | O | - | - | - | - | - | Ciclev10000030m | scaffold_5 | 6404463 | 6435349 | C_unshiu_00034:mRNA_15.1 | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
| Af1116 | - | - | - | - | - | - | Ciclev10001154m | scaffold_5 | 6749024 | 6753178 | C_unshiu_00100:mRNA_44.1 | C_unshiu_00100 | 361556 | 365479 | Magnesium transporter MRS2-like protein | AGI-09 | 85.810 | |||||||||||
| Fb0110 | O | - | - | - | - | - | SI246 | Ciclev10000900m | scaffold_5 | 8512380 | 8517835 | C_unshiu_00033:mRNA_4.1 | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
| Ov0111 | AAvailable marker | - | - | - | - | O | O | Ciclev10000069m | scaffold_5 | 8532280 | 8539677 | C_unshiu_00033:mRNA_6.1 | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
| Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | C_unshiu_00564:mRNA_19.1 | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
| Al0207 | OOthers | - | - | - | - | - | - | Ciclev10020027m | scaffold_3 | 4366802 | 4370111 | C_unshiu_00186:mRNA_18.1 | C_unshiu_00186 | 178635 | 181547 | SNF1-related protein kinase regulatory subunit gamma-1 | AGI-09 | 84.537 | JtR-09S | 9.929 | ||||||||
| Gn0065 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00021:mRNA_4.1 | C_unshiu_00021 | 34178 | 38574 | Phytoene desaturase | AGI-09 | 79.316 | ||||||||||||||
| Bf0195 | - | - | - | - | - | - | SI369 | Ciclev10000780m | scaffold_5 | 31069237 | 31075092 | C_unshiu_00422:mRNA_5.1 | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
| If0216 | OOthers | O | - | - | - | - | - | SI174 | Ciclev10015257m | scaffold_2 | 12876952 | 12881843 | C_unshiu_01838:mRNA_2.1 | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
| Af1377 | - | - | - | - | - | - | Ciclev10001143m | scaffold_5 | 32780339 | 32783349 | C_unshiu_00224:mRNA_50.1 | C_unshiu_00224 | 297837 | 300694 | Seryl-tRNA synthetase (Serin-tRNA ligase) | AGI-09 | 70.624 | |||||||||||
| Af1205 | - | - | - | - | - | - | Ciclev10002396m | scaffold_5 | 34161721 | 34162652 | C_unshiu_00196:mRNA_4.1 | C_unshiu_00196 | 15219 | 16117 | Basic helix-loop-helix DNA-binding superfamily protein, putative | AGI-09 | 64.754 | |||||||||||
| Tf0061 | - | - | - | - | - | - | SI150,SI186 | Ciclev10001592m | scaffold_5 | 35159690 | 35164384 | C_unshiu_00764:mRNA_4.1 | C_unshiu_00764 | 30899 | 36628 | Auxin-responsive protein IAA8 | AGI-09 | 61.651 | ||||||||||
| Tf0151 | AAvailable marker | O | - | - | - | O | O | SI159,SI281 | Ciclev10002917m | scaffold_5 | 35357333 | 35359897 | No | AGI-09 | 60.528 | RP-09 | 41.892 | |||||||||||
| Fb0372 | - | - | - | - | - | - | SI343,SI052 | Ciclev10002666m | scaffold_5 | 35123213 | 35124730 | C_unshiu_00042:mRNA_34.1 | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
| Af2596 | - | - | - | - | - | - | Ciclev10002840m | scaffold_5 | 38154975 | 38155769 | C_unshiu_00319:mRNA_29.1 | C_unshiu_00319 | 189073 | 189599 | Basic blue protein | AGI-09 | 57.830 | |||||||||||
| Cp1477 | - | - | - | - | - | - | Ciclev10001770m | scaffold_5 | 36095844 | 36099890 | C_unshiu_01173:mRNA_9.1 | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
| Cp1162 | AAvailable marker | - | - | - | - | O | O | Ciclev10001345m | scaffold_5 | 35908181 | 35912917 | C_unshiu_00255:mRNA_35.1 | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
| Bf0218 | O | - | - | - | - | - | SI232 | Ciclev10000452m | scaffold_5 | 36036990 | 36048487 | C_unshiu_00406:mRNA_20.1 | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
| Wy0030 | AAvailable marker | O | - | - | - | O | O | Ciclev10001854m | scaffold_5 | 36229310 | 36230518 | C_unshiu_00619:mRNA_10.1 | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
| Fb0153 | - | - | - | - | - | - | Ciclev10002324m | scaffold_5 | 36347986 | 36350649 | C_unshiu_02857:mRNA_2.1 | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
| Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10003485m | scaffold_5 | 36398988 | 36399239 | C_unshiu_00241:mRNA_9.1 | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
| Af1482 | - | - | - | - | - | - | Ciclev10001945m | scaffold_5 | 36550507 | 36552800 | C_unshiu_00657:mRNA_2.2 | C_unshiu_00657 | 28541 | 30831 | DRE binding transcription factor | AGI-09 | 49.255 | |||||||||||
| Cp0257 | - | - | - | - | - | - | Ciclev10001536m | scaffold_5 | 36526073 | 36528589 | C_unshiu_00657:mRNA_4.1 | C_unshiu_00657 | 52199 | 54744 | Trehalose-phosphatase | AGI-09 | 48.390 | |||||||||||
| If0211 | AAvailable marker | - | - | - | - | O | O | SI226 | No | AGI-09 | 47.410 | KmG-09 | 60.856 | |||||||||||||||
| Wy0003 | AAvailable marker | O | - | - | - | O | O | Ciclev10001202m | scaffold_5 | 37189653 | 37192231 | C_unshiu_00144:mRNA_30.1 | C_unshiu_00144 | 215223 | 217733 | Aminotransferase | AGI-09 | 46.823 | KmG-09 | 52.581 | NAT-09 | 69.467 | ||||||
| Ov0407 | AAvailable marker | - | - | - | - | O | O | Ciclev10000563m | scaffold_5 | 37043417 | 37051080 | C_unshiu_00773:mRNA_1.1 | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
| Tf0332 | - | - | - | - | - | - | SI081 | Ciclev10001976m | scaffold_5 | 37586834 | 37589255 | C_unshiu_00985:mRNA_11.1 | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
| Tf0070 | OOthers | O | - | - | - | - | - | SI277 | Ciclev10002250m | scaffold_5 | 39748754 | 39753073 | C_unshiu_01089:mRNA_6.1 | C_unshiu_01089 | 22643 | 26826 | Basic helix-loop-helix family protein | AGI-09 | 45.029 | |||||||||
| Tf0084 | - | - | - | - | - | - | Ciclev10000121m | scaffold_5 | 38288047 | 38296128 | C_unshiu_00183:mRNA_40.1 | C_unshiu_00183 | 305878 | 313881 | Transcription elongation factor SPT5 | AGI-09 | 44.096 | |||||||||||
| Tf0003.2 | OOthers | O | - | - | - | - | - | Ciclev10002471m | scaffold_5 | 37808878 | 37811097 | C_unshiu_00238:mRNA_14.1 | C_unshiu_00238 | 116142 | 129209 | Hypothetical protein | AGI-09 | 44.054 | ||||||||||
| Fb0138 | - | - | - | - | - | - | Ciclev10000092m | scaffold_5 | 38499024 | 38504883 | C_unshiu_00183:mRNA_7.1 | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
| Tf0360 | - | - | - | - | - | - | SI112 | Ciclev10000627m | scaffold_5 | 38669123 | 38672110 | C_unshiu_00430:mRNA_12.1 | C_unshiu_00430 | 98615 | 101120 | Trihelix transcription factor GT-2 | AGI-09 | 43.140 | ||||||||||
| Tf0069 | - | - | - | - | - | - | SI199 | Ciclev10001715m | scaffold_5 | 38566192 | 38571337 | C_unshiu_00183:mRNA_2.1 | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
| Gn0021 | AAvailable marker | - | - | - | - | O | O | Ciclev10000597m | scaffold_5 | 39630111 | 39635609 | C_unshiu_01033:mRNA_10.1 | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
| Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10000651m | scaffold_5 | 39858531 | 39862402 | C_unshiu_00096:mRNA_9.1 | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
| Tf0016 | - | - | - | - | - | - | SI345 | Ciclev10001979m | scaffold_5 | 39839984 | 39841860 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-09 | 42.158 | ||||||||||
| Cp0249 | - | - | - | - | - | - | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_14.1 | C_unshiu_00457 | 96540 | 99356 | Acetyltransferase component of pyruvate dehydrogenase complex | AGI-09 | 41.336 | |||||||||||
| Fb2156 | Fb2156.lg | O | - | - | - | - | - | Ciclev10000537m | scaffold_5 | 39992234 | 39996269 | C_unshiu_00096:mRNA_31.1 | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
| If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | Ciclev10001680m | scaffold_5 | 40628244 | 40630241 | C_unshiu_00234:mRNA_9.1 | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
| Fb0357 | O | - | - | - | - | - | SI384 | Ciclev10001633m | scaffold_5 | 40550222 | 40554434 | C_unshiu_00889:mRNA_6.1 | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
| Cp0506 | AAvailable marker | O | - | - | - | O | O | Ciclev10001978m | scaffold_5 | 40832603 | 40834625 | No | AGI-09 | 38.656 | ||||||||||||||
| Al0618 | AAvailable marker | - | - | - | - | O | O | Ciclev10000916m | scaffold_5 | 40872793 | 40877775 | C_unshiu_00123:mRNA_34.1 | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
| Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | Ciclev10000046m | scaffold_5 | 41184180 | 41190033 | C_unshiu_00127:mRNA_46.1 | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
| Tf0088 | MDisagree by Marco analysis | O | - | - | - | - | - | SI066 | Ciclev10001291m | scaffold_5 | 41275201 | 41278829 | C_unshiu_00127:mRNA_34.1 | C_unshiu_00127 | 251592 | 254627 | Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | AGI-09 | 35.763 | |||||||||
| Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | C_unshiu_00009:mRNA_117.1 | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
| Tf0019 | - | - | - | - | - | - | SI056,SI347 | Ciclev10001255m | scaffold_5 | 41881297 | 41883386 | C_unshiu_00009:mRNA_161.1 | C_unshiu_00009 | 1049324 | 1051358 | C2H2-like zinc finger protein | AGI-09 | 34.799 | ||||||||||
| Lg2005 | - | - | - | - | - | - | Ciclev10002751m | scaffold_5 | 42187714 | 42189727 | C_unshiu_00192:mRNA_45.1 | C_unshiu_00192 | 319592 | 321612 | SCF ubiquitin ligase, SKP1 component | AGI-09 | 34.172 | |||||||||||
| Af1060 | O | - | - | - | - | - | Ciclev10000400m | scaffold_5 | 42918371 | 42923480 | C_unshiu_00370:mRNA_16.1 | C_unshiu_00370 | 75283 | 79772 | Tonoplast monosaccharide transporter 2 | AGI-09 | 23.647 | |||||||||||
| Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | Ciclev10000615m | scaffold_5 | 43060442 | 43066562 | C_unshiu_00370:mRNA_39.2 | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
| Tf0054 | O | - | - | - | - | - | SI238 | Ciclev10000100m | scaffold_5 | 43108998 | 43114214 | C_unshiu_01422:mRNA_2.1 | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
| Fb0326 | O | - | - | - | - | - | Ciclev10002506m | scaffold_5 | 43051579 | 43053394 | C_unshiu_00370:mRNA_38.1 | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
| Bf1185 | - | - | - | - | - | - | Ciclev10003304m | scaffold_5 | 40993520 | 40993992 | No | AGI-09 | ||||||||||||||||
| Tf0085 | - | - | - | - | - | - | SI094,SI211 | Ciclev10012088m | scaffold_6 | 2067586 | 2073007 | C_unshiu_00176:mRNA_13.1 | C_unshiu_00176 | 89975 | 97731 | Transcription factor-like protein DPB | AGI-08 | 96.807 | ||||||||||
| Tf0348 | - | - | - | - | - | - | SI118 | Ciclev10012920m | scaffold_6 | 11611994 | 11614367 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
| Cp0052 | OOthers | O | - | - | - | - | - | C_unshiu_01597:mRNA_11.1 | C_unshiu_01597 | 29471 | 42354 | Glucose-6-phosphate dehydrogenase 4 | AGI-08 | 96.035 | ||||||||||||||
| Tf0271 | Bno homozygous cultivar with minor allele | O | O | - | O | - | - | Ciclev10010976m | scaffold_6 | 11707953 | 11715646 | C_unshiu_01619:mRNA_7.1 | C_unshiu_01619 | 42347 | 50640 | CCR4-NOT transcription complex subunit 4 | AGI-08 | 95.613 | ||||||||||
| Gn0054 | - | - | - | - | - | - | AGI-08 | 95.075 | KmG-04 | 64.581 | ||||||||||||||||||
| Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011346m | scaffold_6 | 7983788 | 7991526 | C_unshiu_02325:mRNA_1.1 | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
| Al0422 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10013176m | scaffold_6 | 14495473 | 14496662 | C_unshiu_00032:mRNA_34.1 | C_unshiu_00032 | 369423 | 370581 | Subtilisin inhibitor 1, putative | AGI-08 | 93.695 | ||||||||||
| Tf0315 | AAvailable marker | O | - | - | - | O | O | Ciclev10012089m | scaffold_6 | 14087181 | 14090115 | C_unshiu_00287:mRNA_20.1 | C_unshiu_00287 | 221944 | 222997 | Phantastica | AGI-08 | 93.657 | ||||||||||
| Af1062 | - | - | - | - | - | - | Ciclev10012766m | scaffold_6 | 14892939 | 14897320 | C_unshiu_00102:mRNA_47.1 | C_unshiu_00102 | 331172 | 333886 | PRA1 family protein A1 | AGI-08 | 93.624 | |||||||||||
| Af1345 | - | - | - | - | - | - | Ciclev10013023m | scaffold_6 | 13082313 | 13084012 | C_unshiu_01022:mRNA_2.1 | C_unshiu_01022 | 8566 | 10161 | Histone H2A | AGI-08 | 93.624 | |||||||||||
| Al0601 | - | - | - | - | - | - | C_unshiu_00065:mRNA_8.1 | C_unshiu_00065 | 39268 | 43421 | Probable GTP diphosphokinase RSH2, chloroplastic | AGI-08 | 93.624 | |||||||||||||||
| Tf0062 | Bno homozygous cultivar with minor allele | O | - | - | O | - | - | SI223 | Ciclev10012377m | scaffold_6 | 11826472 | 11830875 | C_unshiu_00207:mRNA_24.2 | C_unshiu_00207 | 252955 | 255240 | Transcription factor ASG4 | AGI-08 | 93.624 | |||||||||
| Mf0076 | AAvailable marker | - | - | - | - | O | O | Ciclev10012554m | scaffold_6 | 11704199 | 11706676 | C_unshiu_00207:mRNA_15.1 | C_unshiu_00207 | 132539 | 134984 | Cytosolic ascorbate peroxidase | AGI-08 | 93.624 | ||||||||||
| Bf0123 | - | - | - | - | - | - | SI141 | Ciclev10011473m | scaffold_6 | 15803864 | 15809998 | C_unshiu_00284:mRNA_13.1 | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
| Tf0311 | AAvailable marker | O | - | - | - | O | O | Ciclev10011596m | scaffold_6 | 15932016 | 15936176 | C_unshiu_00779:mRNA_8.1 | C_unshiu_00779 | 78105 | 81377 | Auxin transporter-like protein 2 | AGI-08 | 91.890 | ||||||||||
| Wy0059 | Wy0059.em | - | - | - | - | - | - | Ciclev10012904m | scaffold_6 | 8562431 | 8564865 | C_unshiu_00232:mRNA_33.1 | C_unshiu_00232 | 292640 | 294683 | DUF538 family protein | AGI-08 | 91.502 | ||||||||||
| Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | Ciclev10012499m | scaffold_6 | 16909492 | 16912088 | C_unshiu_00008:mRNA_65.1 | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
| Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10030351m | scaffold_8 | 67997 | 74191 | C_unshiu_01137:mRNA_4.1 | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
| Cp0059 | O | - | - | - | - | - | Ciclev10031015m | scaffold_4 | 23075728 | 23081009 | C_unshiu_00001:mRNA_13.1 | C_unshiu_00001 | 89828 | 96147 | Protein NLRC3 | AGI-08 | 86.856 | |||||||||||
| Gn0018 | - | - | - | - | - | - | Ciclev10030969m | scaffold_4 | 5053540 | 5061039 | C_unshiu_00616:mRNA_15.1 | C_unshiu_00616 | 99349 | 106841 | V-type H+-transporting ATPase subunit A | AGI-08 | 84.345 | KmG-02 | 16.986 | |||||||||
| Tf0356 | - | - | - | - | - | - | SI134,SI160 | Ciclev10029063m | scaffold_8 | 998289 | 1001763 | C_unshiu_00041:mRNA_95.3 | C_unshiu_00041 | 588335 | 591780 | Basic-leucine zipper (BZIP) transcription factor family | AGI-08 | 83.743 | ||||||||||
| Al0402 | AAvailable marker | O | - | - | - | O | O | C_unshiu_00008:mRNA_88.1 | C_unshiu_00008 | 564906 | 567158 | Peptide upstream ORF protein, putative | AGI-08 | 81.190 | KmG-04 | 44.163 | NAT-04 | 28.388 | ||||||||||
| Af1362 | - | - | - | - | - | - | Ciclev10027931m | scaffold_8 | 2888992 | 2895645 | C_unshiu_00152:mRNA_9.1 | C_unshiu_00152 | 72564 | 86513 | Hypothetical protein | AGI-08 | 80.366 | |||||||||||
| Fb0246 | - | - | - | - | - | - | Ciclev10029680m | scaffold_8 | 2403492 | 2406922 | C_unshiu_00363:mRNA_27.1 | C_unshiu_00363 | 170901 | 174318 | Hypothetical protein | AGI-08 | 80.078 | |||||||||||
| Cp0297 | - | - | - | - | - | - | Ciclev10028989m | scaffold_8 | 2135445 | 2138606 | C_unshiu_00024:mRNA_26.2 | C_unshiu_00024 | 197656 | 201866 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-08 | 78.209 | |||||||||||
| Edw002 | - | - | - | - | - | - | Ciclev10029316m | scaffold_8 | 2012329 | 2014782 | C_unshiu_00024:mRNA_48.2 | C_unshiu_00024 | 335678 | 337129 | LIM transcription factor | AGI-08 | 77.720 | |||||||||||
| Gn0049 | - | - | - | - | - | - | Ciclev10028366m | scaffold_8 | 1604460 | 1606311 | C_unshiu_00024:mRNA_95.1 | C_unshiu_00024 | 699386 | 701126 | DUF1005 family protein | AGI-08 | 77.688 | JtR-08 | 17.757 | |||||||||
| Al0247 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10029281m | scaffold_8 | 2227827 | 2230752 | C_unshiu_00024:mRNA_15.1 | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
| Lg2004 | - | - | - | - | - | - | Ciclev10028785m | scaffold_8 | 2599717 | 2602090 | C_unshiu_00152:mRNA_53.1 | C_unshiu_00152 | 347645 | 349890 | Cinnamyl alcohol dehydrogenase | AGI-08 | 76.045 | |||||||||||
| Cp0603 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10028998m | scaffold_8 | 2349655 | 2354496 | C_unshiu_00363:mRNA_34.1 | C_unshiu_00363 | 217631 | 222409 | Hop-interacting protein THI043 | AGI-08 | 75.684 | ||||||||||
| Al0517 | AAvailable marker | - | - | - | - | O | O | Ciclev10028293m | scaffold_8 | 2572439 | 2574295 | C_unshiu_00363:mRNA_1.1 | C_unshiu_00363 | 5892 | 7583 | Limonoid glucosyltransferase | AGI-08 | 74.016 | JtR-08 | 15.435 | ||||||||
| Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | Ciclev10030023m | scaffold_8 | 2673135 | 2674232 | C_unshiu_00152:mRNA_38.1 | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
| Fb0293 | - | - | - | - | - | - | SI198,SI374 | C_unshiu_00152:mRNA_37.1 | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
| Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028247m | scaffold_8 | 2561845 | 2563605 | C_unshiu_00363:mRNA_2.1 | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
| Lp0226 | O | - | - | - | - | - | SI210 | Ciclev10027999m | scaffold_8 | 2831832 | 2837109 | C_unshiu_00152:mRNA_19.1 | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
| Tf0250 | AAvailable marker | O | - | - | - | O | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | AGI-08 | 73.105 | ||||||||||
| Cp1144 | OOthers | - | - | - | - | - | - | Ciclev10028086m | scaffold_8 | 2649991 | 2655756 | C_unshiu_00152:mRNA_43.1 | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
| Wy0004 | - | - | - | - | - | - | C_unshiu_02819:mRNA_2.1 | C_unshiu_02819 | 2728 | 4118 | CXE carboxylesterase | AGI-08 | 70.463 | NAT-082 | 65.434 | |||||||||||||
| Lg2002 | - | - | - | - | - | - | Ciclev10028055m | scaffold_8 | 2646458 | 2649562 | C_unshiu_00152:mRNA_44.1 | C_unshiu_00152 | 294607 | 297615 | Phosphoglycerate dehydrogenase | AGI-08 | 69.974 | |||||||||||
| Af1416 | - | - | - | - | - | - | Ciclev10029140m | scaffold_8 | 3738607 | 3741747 | C_unshiu_00589:mRNA_10.1 | C_unshiu_00589 | 131180 | 134227 | Embryo defective 1273, putative isoform 1 | AGI-08 | 68.834 | |||||||||||
| Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10008869m | scaffold_1 | 23654785 | 23658857 | C_unshiu_00175:mRNA_30.1 | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
| Tf0405 | - | - | - | - | - | - | Ciclev10027952m | scaffold_8 | 6025802 | 6031497 | C_unshiu_00220:mRNA_2.1 | C_unshiu_00220 | 48148 | 53214 | BEL1-like homeodomain protein 6 | AGI-08 | 61.643 | |||||||||||
| Gn0063 | OOthers | O | - | - | - | - | - | Ciclev10019925m | scaffold_3 | 40937725 | 40942854 | C_unshiu_00735:mRNA_14.1 | C_unshiu_00735 | 99621 | 103733 | Violaxanthin de-epoxidase | AGI-08 | 60.140 | KmG-07 | 31.750 | ||||||||
| Af1486 | - | - | - | - | - | - | Ciclev10029576m | scaffold_8 | 17510926 | 17513265 | C_unshiu_00962:mRNA_1.1 | C_unshiu_00962 | 434 | 2684 | Prefoldin subunit 4 | AGI-08 | 59.562 | |||||||||||
| Gn0058 | - | - | - | - | - | - | Ciclev10029531m | scaffold_8 | 11297754 | 11299510 | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-08 | 59.107 | |||||||||||
| Bf0115 | O | - | - | - | - | - | SI054,SI295 | Ciclev10029066m | scaffold_8 | 6317205 | 6322458 | C_unshiu_00484:mRNA_11.3 | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
| Tf0290 | AAvailable marker | O | - | - | - | O | O | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | AGI-08 | 57.802 | ||||||||||
| Af1398 | - | - | - | - | - | - | Ciclev10030393m | scaffold_8 | 7899376 | 7902959 | C_unshiu_00887:mRNA_6.1 | C_unshiu_00887 | 49120 | 57547 | Hypothetical protein | AGI-08 | 57.551 | |||||||||||
| Bf0409 | - | - | - | - | - | - | C_unshiu_00616:mRNA_6.1 | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
| Tf0325 | OOthers | O | - | - | - | - | - | Ciclev10029355m | scaffold_8 | 6700441 | 6703748 | C_unshiu_02974:mRNA_2.1 | C_unshiu_02974 | 10142 | 13418 | B-box type zinc finger family protein | AGI-08 | 57.386 | ||||||||||
| Mf0058 | T3 or more alleleic model | - | - | - | - | - | - | Ciclev10022378m | scaffold_3 | 46818817 | 46822856 | C_unshiu_00053:mRNA_58.1 | C_unshiu_00053 | 481338 | 485184 | Nitrogen regulatory protein P-II | AGI-08 | 57.196 | JtR-05 | 39.516 | ||||||||
| Fb0389 | - | - | - | - | - | - | Ciclev10014121m | scaffold_2 | 25179668 | 25188103 | C_unshiu_00087:mRNA_31.1 | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
| Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | Ciclev10029386m | scaffold_8 | 8176371 | 8177435 | C_unshiu_00728:mRNA_1.1 | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
| Vt0003 | - | - | - | - | - | - | Ciclev10027667m | scaffold_8 | 8153660 | 8174407 | C_unshiu_00616:mRNA_3.1 | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Tf0210 | - | - | - | - | - | - | SI183 | Ciclev10004533m | scaffold_9 | 11993282 | 11999324 | C_unshiu_00926:mRNA_13.1 | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
| Gmom13 | - | - | - | - | - | - | Ciclev10005787m | scaffold_9 | 13223034 | 13225922 | C_unshiu_00620:mRNA_11.2 | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
| Af1575 | - | - | - | - | - | - | Ciclev10029551m | scaffold_8 | 17524835 | 17526697 | C_unshiu_02252:mRNA_4.1 | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
| Af1052 | O | - | - | - | - | - | Ciclev10004444m | scaffold_9 | 12808154 | 12820311 | C_unshiu_00508:mRNA_9.1 | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Wy0015 | O | - | - | - | - | - | SI041 | Ciclev10028465m | scaffold_8 | 13101257 | 13103161 | C_unshiu_02878:mRNA_1.1 | C_unshiu_02878 | 9199 | 10715 | UDP-glycosyltransferase 73C5 | AGI-08 | 56.724 | ||||||||||
| Wy0045 | Wy0045.k | - | - | - | - | - | - | Ciclev10028268m | scaffold_8 | 9564698 | 9566326 | C_unshiu_02764:mRNA_1.1 | C_unshiu_02764 | 1529 | 2654 | Geraniol 10-hydroxylase-like protein | AGI-08 | 56.724 | ||||||||||
| Al0632 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10028775m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | AGI-08 | 56.724 | JtR-08 | 18.952 | ||||||||
| Al0643 | - | - | - | - | - | - | Ciclev10012685m | scaffold_6 | 11126658 | 11131076 | C_unshiu_02977:mRNA_1.1 | C_unshiu_02977 | 1950 | 2673 | Dolichyldiphosphatase 1 | AGI-08 | 56.724 | |||||||||||
| Cp0632 | AAvailable marker | O | - | - | - | O | O | Ciclev10007941m | scaffold_1 | 27698934 | 27703620 | C_unshiu_00237:mRNA_7.1 | C_unshiu_00237 | 40930 | 45531 | Protein translocase subunit SecY | AGI-08 | 56.724 | ||||||||||
| Em0003 | - | - | - | - | - | - | Ciclev10011201m | scaffold_6 | 19840881 | 19844299 | C_unshiu_00043:mRNA_48.1 | C_unshiu_00043 | 360776 | 363775 | BEL1-like homeodomain protein 1 | AGI-08 | 56.724 | |||||||||||
| Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | Ciclev10004850m | scaffold_9 | 13440332 | 13442904 | C_unshiu_02379:mRNA_2.1 | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
| Af1110 | - | - | - | - | - | - | Ciclev10028599m | scaffold_8 | 9656865 | 9660001 | C_unshiu_01425:mRNA_1.1 | C_unshiu_01425 | 333 | 5522 | N-carbamoylputrescine amidase | AGI-08 | 56.690 | |||||||||||
| Tf0144 | - | - | - | - | - | - | SI125,SI189,SI192 | Ciclev10028782m | scaffold_8 | 8009000 | 8012045 | C_unshiu_00682:mRNA_12.1 | C_unshiu_00682 | 86334 | 89311 | Transcription factor bHLH121 | AGI-08 | 56.439 | ||||||||||
| Fb0321 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10027873m | scaffold_8 | 6834487 | 6837762 | C_unshiu_00918:mRNA_1.1 | C_unshiu_00918 | 5010 | 7626 | Arginine decarboxylase 1 | AGI-08 | 56.405 | JtR-08 | 25.280 | ||||||||
| Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | Ciclev10027769m | scaffold_8 | 13408610 | 13413938 | C_unshiu_01226:mRNA_1.1 | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
| Cp2237 | AAvailable marker | - | - | - | - | O | O | Ciclev10028314m | scaffold_8 | 13190041 | 13194829 | C_unshiu_01736:mRNA_2.1 | C_unshiu_01736 | 18986 | 23543 | Riboflavin biosynthesis protein ribBA, chloroplastic | AGI-08 | 55.965 | ||||||||||
| Gn0037 | - | - | - | - | - | - | Ciclev10032578m | scaffold_4 | 21042049 | 21048279 | C_unshiu_00010:mRNA_111.3 | C_unshiu_00010 | 823068 | 829158 | Agamous-like MADS-box protein AGL9 homolog | AGI-08 | 55.656 | |||||||||||
| Cp0077 | O | - | - | - | - | - | Ciclev10015497m | scaffold_2 | 9849133 | 9852098 | C_unshiu_00049:mRNA_29.1 | C_unshiu_00049 | 210181 | 212829 | Altered inheritance of mitochondria protein 32 | AGI-08 | 54.867 | |||||||||||
| Tf0336 | - | - | - | - | - | - | Ciclev10029022m | scaffold_8 | 10574673 | 10578797 | C_unshiu_02599:mRNA_1.1 | C_unshiu_02599 | 10362 | 14310 | NAD(P)-linked oxidoreductase superfamily protein | AGI-08 | 54.304 | |||||||||||
| Al0240 | AAvailable marker | - | - | - | - | O | O | Ciclev10028497m | scaffold_8 | 8033465 | 8038415 | C_unshiu_00682:mRNA_9.1 | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
| Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | Ciclev10018691m | scaffold_3 | 34696661 | 34702240 | C_unshiu_00669:mRNA_17.2 | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
| Af1487 | - | - | - | - | - | - | Ciclev10028531m | scaffold_8 | 18155481 | 18157658 | C_unshiu_00251:mRNA_22.1 | C_unshiu_00251 | 205180 | 207288 | DnaJ | AGI-08 | 47.330 | |||||||||||
| Bf0415 | - | - | - | - | - | - | C_unshiu_00643:mRNA_7.1 | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
| Wy0039 | AAvailable marker | - | - | - | - | O | O | Ciclev10028965m | scaffold_8 | 18824262 | 18825514 | C_unshiu_00459:mRNA_4.1 | C_unshiu_00459 | 34475 | 34918 | Hypothetical protein | AGI-08 | 45.276 | JtR-08 | 16.276 | ||||||||
| Gn0100 | - | - | - | - | - | - | Ciclev10028245m | scaffold_8 | 19259623 | 19261508 | C_unshiu_00814:mRNA_2.1 | C_unshiu_00814 | 13987 | 15768 | Putative lycopene beta cyclase | AGI-08 | 44.669 | |||||||||||
| Cp1084 | OOthers | - | - | - | - | - | - | C_unshiu_01090:mRNA_3.1 | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
| Cp0703 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | AGI-08 | 43.089 | |||||||||||
| Ov0125 | AAvailable marker | - | - | - | - | O | O | Ciclev10028359m | scaffold_8 | 20352232 | 20354410 | C_unshiu_00320:mRNA_8.1 | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | AGI-08 | 41.398 | ||||||||||
| Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10029315m | scaffold_8 | 20424287 | 20425903 | C_unshiu_00320:mRNA_1.2 | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
| Al0411 | AAvailable marker | O | - | - | - | O | O | Ciclev10029439m | scaffold_8 | 19760077 | 19761961 | C_unshiu_00011:mRNA_19.2 | C_unshiu_00011 | 188649 | 189649 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-08 | 40.857 | ||||||||||
| Sd0004 | - | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 40.459 | |||||||||||||||
| Af1515 | - | - | - | - | - | - | Ciclev10027760m | scaffold_8 | 20838053 | 20844872 | C_unshiu_00883:mRNA_4.1 | C_unshiu_00883 | 60978 | 104832 | Argonaute 1 | AGI-08 | 40.438 | |||||||||||
| Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
| Gn0030 | MDisagree by Marco analysis | - | - | - | - | - | - | AGI-08 | 37.823 | KmG-08 | 37.758 | NAT-082 | 30.069 | |||||||||||||||
| Gn0031 | AtAvailable marker | - | - | - | - | O | O | AGI-08 | 37.706 | |||||||||||||||||||
| Tf0227 | AAvailable marker | O | - | - | - | O | O | Ciclev10031750m | scaffold_4 | 21666061 | 21671693 | C_unshiu_00010:mRNA_30.1 | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
| Tf0096 | O | - | - | - | - | - | Ciclev10028804m | scaffold_8 | 21369373 | 21370728 | C_unshiu_00784:mRNA_1.1 | C_unshiu_00784 | 297 | 1652 | Transcription factor RAX3 | AGI-08 | 34.042 | |||||||||||
| Ov0520 | OOthers | O | - | - | - | - | - | Ciclev10029053m | scaffold_8 | 4712393 | 4713689 | C_unshiu_00438:mRNA_3.1 | C_unshiu_00438 | 34343 | 35619 | BURP domain-containing protein | AGI-08 | 33.144 | JtR-08 | 26.748 | ||||||||
| Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | Ciclev10027790m | scaffold_8 | 21953129 | 21960709 | C_unshiu_02574:mRNA_1.1 | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
| Bf0412 | - | - | - | - | - | - | No | AGI-08 | 29.534 | |||||||||||||||||||
| Tf0241 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10027798m | scaffold_8 | 22106872 | 22114471 | C_unshiu_00481:mRNA_18.1 | C_unshiu_00481 | 121975 | 128680 | Zinc finger CCCH domain-containing protein 24 | AGI-08 | 27.618 | ||||||||||
| Tf0029 | - | - | - | - | - | - | Ciclev10027901m | scaffold_8 | 21887372 | 21893128 | C_unshiu_00500:mRNA_16.1 | C_unshiu_00500 | 147319 | 151840 | Auxin response factor | AGI-08 | 27.318 | |||||||||||
| Tf0412 | - | - | - | - | - | - | Ciclev10028306m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||||
| Tf0150 | AAvailable marker | O | O | - | O | O | O | SI262 | Ciclev10028292m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||
| Al0416 | OOthers | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00639:mRNA_12.1 | C_unshiu_00639 | 90698 | 99467 | Elongation factor 1-alpha | AGI-08 | 23.023 | JtR-07 | 60.405 | NAT-082 | 21.126 | ||||||
| Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | Ciclev10027909m | scaffold_8 | 22730839 | 22737522 | C_unshiu_00158:mRNA_13.1 | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
| Af1208 | - | - | - | - | - | - | Ciclev10029134m | scaffold_8 | 23036291 | 23037524 | C_unshiu_02220:mRNA_1.1 | C_unshiu_02220 | 11982 | 13216 | Tonoplast intrinsic protein | AGI-08 | 17.057 | |||||||||||
| Cp2190 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028681m | scaffold_8 | 24416582 | 24418982 | C_unshiu_00021:mRNA_82.1 | C_unshiu_00021 | 526890 | 529253 | Kinase PfkB | AGI-08 | 13.780 | ||||||||||
| Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | Ciclev10028241m | scaffold_8 | 23456630 | 23459052 | C_unshiu_00375:mRNA_4.1 | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
| Cp0719 | - | - | - | - | - | - | Ciclev10028417m | scaffold_8 | 23257043 | 23262019 | C_unshiu_02393:mRNA_2.1 | C_unshiu_02393 | 18637 | 23537 | Inner membrane protein ALBINO3 | AGI-08 | 12.793 | |||||||||||
| Fb2130 | - | - | - | - | - | - | SI069,SI117 | Ciclev10030030m | scaffold_8 | 24341129 | 24344795 | C_unshiu_00021:mRNA_68.1 | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
| Lp0031 | - | - | - | - | - | - | Ciclev10027944m | scaffold_8 | 22261408 | 22266208 | C_unshiu_00639:mRNA_5.1 | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
| Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | Ciclev10028631m | scaffold_8 | 24315720 | 24317671 | C_unshiu_00021:mRNA_65.1 | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
| Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | Ciclev10028839m | scaffold_8 | 24721937 | 24724569 | C_unshiu_00984:mRNA_8.1 | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
| Cp2188 | AAvailable marker | - | - | - | - | O | O | Ciclev10028997m | scaffold_8 | 24666729 | 24669708 | C_unshiu_00021:mRNA_116.1 | C_unshiu_00021 | 778469 | 782836 | Phytol kinase | AGI-08 | 2.186 | ||||||||||
| Tf0014.2 | - | - | - | - | - | - | Ciclev10030185m | scaffold_8 | 24976315 | 24979483 | C_unshiu_00271:mRNA_9.1 | C_unshiu_00271 | 56325 | 61820 | Transcription factor | AGI-08 | ||||||||||||
| Gn0002 | - | - | - | - | - | - | Ciclev10032697m | scaffold_4 | 3335945 | 3338632 | C_unshiu_00465:mRNA_12.1 | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
| Wy0011 | OOthers | O | - | - | - | - | - | SI091 | Ciclev10032364m | scaffold_4 | 24417602 | 24419019 | C_unshiu_00001:mRNA_226.1 | C_unshiu_00001 | 1429943 | 1431279 | Enoyl CoA hydratase/isomerase | AGI-07 | 86.288 | |||||||||
| Gn0071 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI363 | Ciclev10031039m | scaffold_4 | 25506446 | 25511133 | C_unshiu_00001:mRNA_343.1 | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-07 | 86.113 | |||||||||
| Af1187 | - | - | - | - | - | - | Ciclev10031748m | scaffold_4 | 24996017 | 25000652 | C_unshiu_00001:mRNA_314.1 | C_unshiu_00001 | 1991693 | 1996431 | Tocopherol O-methyltransferase | AGI-07 | 85.027 | |||||||||||
| Tf0043 | - | - | - | - | - | - | Ciclev10032519m | scaffold_4 | 24820269 | 24824732 | C_unshiu_00001:mRNA_295.1 | C_unshiu_00001 | 1871301 | 1874281 | Agamous-like MADS-box protein AGL15 | AGI-07 | 84.593 | |||||||||||
| Bf1243 | - | - | - | - | - | - | Ciclev10032276m | scaffold_4 | 24657015 | 24660141 | C_unshiu_00001:mRNA_262.1 | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
| Af3017 | - | - | - | - | - | - | Ciclev10031492m | scaffold_4 | 24401841 | 24406470 | C_unshiu_00001:mRNA_224.1 | C_unshiu_00001 | 1415778 | 1420221 | Serine/threonine-protein kinase PBS1 | AGI-07 | 83.217 | |||||||||||
| Af1405 | - | - | - | - | - | - | Ciclev10032481m | scaffold_4 | 24503838 | 24505365 | C_unshiu_00001:mRNA_238.1 | C_unshiu_00001 | 1513811 | 1515209 | FH interacting protein 1 | AGI-07 | 83.026 | |||||||||||
| Cp0057 | - | - | - | - | - | - | Ciclev10031335m | scaffold_4 | 24227703 | 24230754 | C_unshiu_00001:mRNA_187.1 | C_unshiu_00001 | 1244353 | 1247404 | DUF1336 family protein | AGI-07 | 79.269 | |||||||||||
| Gmom22 | - | - | - | - | - | - | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
| Af1690 | - | - | - | - | - | - | Ciclev10032651m | scaffold_4 | 23923757 | 23925178 | C_unshiu_00001:mRNA_137.1 | C_unshiu_00001 | 920379 | 924128 | Hypothetical protein | AGI-07 | 77.752 | |||||||||||
| Cp0089 | Bno homozygous cultivar with minor allele | O | - | O | - | - | - | Ciclev10032543m | scaffold_4 | 23858830 | 23861090 | C_unshiu_00001:mRNA_128.1 | C_unshiu_00001 | 852968 | 856494 | CAAX amino terminal protease family protein | AGI-07 | 77.194 | ||||||||||
| Tf0094 | - | - | - | - | - | - | SI006 | Ciclev10031937m | scaffold_4 | 23957038 | 23959134 | C_unshiu_00001:mRNA_145.1 | C_unshiu_00001 | 950657 | 954895 | Myb family transcription factor APL | AGI-07 | 77.141 | ||||||||||
| Tf0424 | - | - | - | - | - | - | Ciclev10031190m | scaffold_4 | 23908189 | 23912723 | C_unshiu_00001:mRNA_134.1 | C_unshiu_00001 | 904872 | 908655 | Apyrase | AGI-07 | 77.041 | |||||||||||
| Al0408 | O | - | - | - | - | - | Ciclev10031487m | scaffold_4 | 23737757 | 23740513 | C_unshiu_00001:mRNA_109.1 | C_unshiu_00001 | 727392 | 729266 | F-box/kelch-repeat protein SKIP11 | AGI-07 | 75.917 | KmG-07 | 13.235 | JtR-07 | 1.788 | |||||||
| Cp0452 | AAvailable marker | - | - | - | - | O | O | Ciclev10030661m | scaffold_4 | 23575399 | 23582495 | C_unshiu_00001:mRNA_85.1 | C_unshiu_00001 | 566935 | 573821 | Alpha-amylase-like 3 isoform 1 | AGI-07 | 75.350 | ||||||||||
| Tf0045 | - | - | - | - | - | - | SI303,SI321 | Ciclev10032837m | scaffold_4 | 23496020 | 23497466 | C_unshiu_00001:mRNA_74.1 | C_unshiu_00001 | 490607 | 491890 | Homeobox transcription factor | AGI-07 | 74.573 | ||||||||||
| Cp0093 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10032427m | scaffold_4 | 23596434 | 23599906 | C_unshiu_00001:mRNA_89.1 | C_unshiu_00001 | 587949 | 598235 | Putative WRKY transcription factor 72 | AGI-07 | 74.537 | ||||||||||
| Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | Ciclev10032275m | scaffold_4 | 23695766 | 23697703 | C_unshiu_00001:mRNA_105.2 | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
| Ov0105.2 | Ov0106.2 | - | - | - | - | - | - | Ciclev10031362m | scaffold_4 | 23552856 | 23556415 | C_unshiu_00001:mRNA_81.1 | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | AGI-07 | 74.064 | KmG-07 | 15.390 | JtR-07 | 5.947 | ||||||
| Af1509 | - | - | - | - | - | - | Ciclev10032314m | scaffold_4 | 23564251 | 23568956 | C_unshiu_00001:mRNA_83.3 | C_unshiu_00001 | 555659 | 560336 | Hypersensitive-induced response protein 1 | AGI-07 | 73.796 | |||||||||||
| Cp0454 | - | - | - | - | - | - | Ciclev10030551m | scaffold_4 | 23200936 | 23206254 | C_unshiu_00001:mRNA_32.1 | C_unshiu_00001 | 214996 | 218740 | DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic | AGI-07 | 73.034 | |||||||||||
| Af1432 | - | - | - | - | - | - | Ciclev10032069m | scaffold_4 | 23666784 | 23669594 | C_unshiu_00001:mRNA_103.1 | C_unshiu_00001 | 659252 | 662036 | UDP-galactose/UDP-glucose transporter 5B | AGI-07 | 72.828 | |||||||||||
| Af1447 | - | - | - | - | - | - | Ciclev10031155m | scaffold_4 | 22802995 | 22807340 | C_unshiu_00004:mRNA_35.1 | C_unshiu_00004 | 275820 | 279748 | Aldehyde dehydrogenase | AGI-07 | 70.744 | |||||||||||
| Lp0212 | O | - | - | - | - | - | Ciclev10030930m | scaffold_4 | 22697056 | 22699336 | C_unshiu_00004:mRNA_48.1 | C_unshiu_00004 | 381547 | 383756 | Polygalacturonase 1 beta-like protein 3 | AGI-07 | 69.544 | |||||||||||
| Af1495 | - | - | - | - | - | - | Ciclev10032113m | scaffold_4 | 22523092 | 22528307 | C_unshiu_00004:mRNA_77.1 | C_unshiu_00004 | 548746 | 553542 | UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3 | AGI-07 | 69.544 | |||||||||||
| Bf0232 | - | - | - | - | - | - | Ciclev10031191m | scaffold_4 | 21861774 | 21865635 | C_unshiu_01346:mRNA_3.1 | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
| Af1633 | - | - | - | - | - | - | Ciclev10020304m | scaffold_3 | 3963024 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-07 | 67.201 | |||||||||||
| Gn0046 | - | - | - | - | - | - | Ciclev10001212m | scaffold_5 | 21522433 | 21525218 | C_unshiu_00201:mRNA_11.2 | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | AGI-07 | 64.812 | JtR-08 | 23.181 | |||||||||
| Tf0148 | AAvailable marker | O | - | - | - | O | O | SI119 | Ciclev10032816m | scaffold_4 | 20998708 | 21001535 | C_unshiu_00010:mRNA_116.1 | C_unshiu_00010 | 869802 | 872410 | Putative WRKY transcription factor 75 | AGI-07 | 64.812 | |||||||||
| Cp0675 | AAvailable marker | O | - | - | - | O | O | Ciclev10030633m | scaffold_4 | 20294240 | 20301426 | C_unshiu_00015:mRNA_33.1 | C_unshiu_00015 | 302440 | 309360 | DNA-directed RNA polymerase | AGI-07 | 59.793 | ||||||||||
| Tf0212 | - | - | - | - | - | - | SI196 | Ciclev10030538m | scaffold_4 | 19816800 | 19825304 | C_unshiu_00535:mRNA_20.1 | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
| Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | Ciclev10032902m | scaffold_4 | 19467669 | 19468803 | C_unshiu_00099:mRNA_4.1 | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
| Tf0165 | AAvailable marker | O | - | - | - | O | O | Ciclev10031793m | scaffold_4 | 19605473 | 19608059 | C_unshiu_00099:mRNA_19.1 | C_unshiu_00099 | 154500 | 156794 | Two-component response regulator ARR18 | AGI-07 | 55.503 | ||||||||||
| Tf0310 | - | - | - | - | - | - | Ciclev10031598m | scaffold_4 | 19681884 | 19685929 | C_unshiu_00099:mRNA_27.1 | C_unshiu_00099 | 233334 | 237357 | NAC domain-containing protein 8 | AGI-07 | 54.869 | |||||||||||
| Tf0337 | AAvailable marker | O | - | - | - | O | O | Ciclev10031846m | scaffold_4 | 19635415 | 19637061 | C_unshiu_00099:mRNA_23.1 | C_unshiu_00099 | 186480 | 188051 | Ap2 erf and b3 domain-containing transcription factor rav2 | AGI-07 | 54.869 | ||||||||||
| Vt0028 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
| Tf0213 | OOthers | O | - | - | - | - | - | Ciclev10030571m | scaffold_4 | 18839546 | 18848948 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
| Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | Ciclev10030998m | scaffold_4 | 17143350 | 17147918 | C_unshiu_00478:mRNA_2.1 | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
| Cp0062 | O | - | - | - | - | - | Ciclev10032378m | scaffold_4 | 16107199 | 16109587 | C_unshiu_01642:mRNA_2.1 | C_unshiu_01642 | 16316 | 20085 | Ribose-phosphate diphosphokinase | AGI-07 | 45.716 | |||||||||||
| Tf0320 | - | - | - | - | - | - | SI203 | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 45.716 | ||||||||||
| If0207 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_01172:mRNA_2.1 | C_unshiu_01172 | 28413 | 28712 | Hypothetical protein | AGI-07 | 45.716 | ||||||||||||||
| Fb0234 | - | - | - | - | - | - | SI250,SI265 | Ciclev10032271m | scaffold_4 | 16176836 | 16178421 | C_unshiu_00086:mRNA_8.1 | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
| Mf0097 | AAvailable marker | O | O | - | O | O | O | SI235,SI365 | No | AGI-07 | 44.663 | KmG-07 | 50.959 | JtR-07 | 44.863 | NAT-07 | 3.290 | RP-07 | 46.168 | |||||||||
| Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | Ciclev10030472m | scaffold_4 | 17057658 | 17074755 | C_unshiu_00225:mRNA_13.1 | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
| Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | Ciclev10033176m | scaffold_4 | 16232756 | 16233365 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
| Tf0112 | O | - | - | - | - | - | Ciclev10031118m | scaffold_4 | 17014582 | 17026325 | C_unshiu_00225:mRNA_9.1 | C_unshiu_00225 | 37090 | 44898 | Regulation of nuclear pre-mRNA domain-containing protein 1B | AGI-07 | 43.014 | |||||||||||
| Tf0065 | - | - | - | - | - | - | SI142 | Ciclev10030696m | scaffold_4 | 13945795 | 13951313 | C_unshiu_00357:mRNA_3.1 | C_unshiu_00357 | 35189 | 39739 | Auxin response factor | AGI-07 | 41.876 | ||||||||||
| Edb003 | OOthers | - | - | - | - | - | - | Ciclev10032012m | scaffold_4 | 16046322 | 16048971 | C_unshiu_01260:mRNA_4.1 | C_unshiu_01260 | 30136 | 32342 | Putative WRKY transcription factor 28 | AGI-07 | 41.830 | ||||||||||
| Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | Ciclev10015385m | scaffold_2 | 4021167 | 4024377 | C_unshiu_00992:mRNA_13.1 | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
| Bf0027 | - | - | - | - | - | - | SI372 | Ciclev10032632m | scaffold_4 | 14565456 | 14567860 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 40.515 | ||||||||||
| Cp1279 | AAvailable marker | - | - | - | - | O | O | Ciclev10031414m | scaffold_4 | 12900777 | 12903692 | C_unshiu_00461:mRNA_17.1 | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
| Af1629 | - | - | - | - | - | - | Ciclev10012332m | scaffold_6 | 2969527 | 2973147 | C_unshiu_00060:mRNA_62.1 | C_unshiu_00060 | 539807 | 543307 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | AGI-07 | 39.420 | |||||||||||
| Cp1044 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10015927m | scaffold_2 | 4354278 | 4358516 | C_unshiu_00062:mRNA_38.1 | C_unshiu_00062 | 326045 | 332995 | Iron-sulfur cluster formation ABC transporter ATP-binding subunit | AGI-07 | 39.420 | ||||||||||
| Tf0027 | - | - | - | - | - | - | SI046 | Ciclev10026602m | scaffold_7 | 13911684 | 13912447 | C_unshiu_00792:mRNA_11.1 | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
| Tf0076 | - | - | - | - | - | - | SI266 | Ciclev10031150m | scaffold_4 | 7200135 | 7204232 | C_unshiu_00013:mRNA_63.3 | C_unshiu_00013 | 459064 | 463137 | NAC domain-containing protein 78 | AGI-07 | 38.565 | ||||||||||
| Al0206 | AAvailable marker | - | - | - | - | O | O | Ciclev10032727m | scaffold_4 | 12309480 | 12311438 | C_unshiu_00365:mRNA_26.1 | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
| Fb1134.2 | - | - | - | - | - | - | Ciclev10030474m | scaffold_4 | 9547707 | 9559498 | C_unshiu_00140:mRNA_14.1 | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
| Cp0233 | - | - | - | - | - | - | Ciclev10031694m | scaffold_4 | 11210879 | 11216325 | C_unshiu_00061:mRNA_64.1 | C_unshiu_00061 | 550725 | 556167 | Ribose-phosphate pyrophosphokinase 4 | AGI-07 | 37.826 | |||||||||||
| Tf0267 | AAvailable marker | O | - | - | - | O | O | Ciclev10031834m | scaffold_4 | 12571526 | 12575185 | C_unshiu_00847:mRNA_8.1 | C_unshiu_00847 | 48651 | 52296 | Squamosa promoter-binding-like protein 13 | AGI-07 | 37.800 | ||||||||||
| Tf0318 | AAvailable marker | O | O | O | - | O | O | Ciclev10031873m | scaffold_4 | 13751433 | 13754767 | C_unshiu_00240:mRNA_28.2 | C_unshiu_00240 | 282002 | 285335 | Transcription factor bHLH137 | AGI-07 | 37.467 | ||||||||||
| Cp2118 | - | - | - | - | - | - | Ciclev10032406m | scaffold_4 | 14565456 | 14568265 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 37.152 | |||||||||||
| Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | Ciclev10017346m | scaffold_2 | 3067337 | 3069249 | C_unshiu_00246:mRNA_8.1 | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
| Tf0087 | - | - | - | - | - | - | SI166,SI271,SI287 | Ciclev10031120m | scaffold_4 | 11412331 | 11417624 | C_unshiu_00019:mRNA_18.1 | C_unshiu_00019 | 190344 | 195992 | Two-component response regulator-like APRR2 | AGI-07 | 35.897 | ||||||||||
| Cp0237 | - | - | - | - | - | - | Ciclev10033007m | scaffold_4 | 10652381 | 10655082 | C_unshiu_00483:mRNA_11.1 | C_unshiu_00483 | 100177 | 109515 | Protein LSD1 | AGI-07 | 35.506 | |||||||||||
| Bf0031 | O | - | - | - | - | - | Ciclev10031547m | scaffold_4 | 4077557 | 4083819 | C_unshiu_00306:mRNA_12.1 | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
| Cp0634 | - | - | - | - | - | - | Ciclev10031740m | scaffold_4 | 15660463 | 15665838 | C_unshiu_00824:mRNA_8.1 | C_unshiu_00824 | 96745 | 119992 | Hypothetical protein | AGI-07 | 32.589 | |||||||||||
| Cp0975 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10012312m | scaffold_6 | 7924189 | 7928192 | C_unshiu_00631:mRNA_15.1 | C_unshiu_00631 | 149702 | 153660 | Isopentenyl pyrophosphate isomerase | AGI-07 | 29.152 | ||||||||||
| Lp0112 | AAvailable marker | O | - | - | - | - | - | Ciclev10032923m | scaffold_4 | 3749809 | 3751724 | C_unshiu_00236:mRNA_28.1 | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
| Lp0220 | O | - | - | - | - | - | Ciclev10000749m | scaffold_5 | 39221210 | 39227401 | C_unshiu_00495:mRNA_21.1 | C_unshiu_00495 | 125230 | 136174 | Hypothetical protein | AGI-07 | 14.968 | |||||||||||
| Fb0322 | O | - | - | - | - | - | Ciclev10030532m | scaffold_4 | 3249710 | 3254808 | C_unshiu_00342:mRNA_35.1 | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
| Tf0335 | - | - | - | - | - | - | SI014,SI168 | Ciclev10033529m | scaffold_4 | 2457798 | 2458868 | C_unshiu_00979:mRNA_19.1 | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
| Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | Ciclev10032770m | scaffold_4 | 2422861 | 2424838 | C_unshiu_00979:mRNA_13.2 | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
| Vt0029 | - | - | - | - | - | - | Ciclev10031975m | scaffold_4 | 2451345 | 2454325 | C_unshiu_00979:mRNA_17.1 | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
| Af1505 | - | - | - | - | - | - | Ciclev10031326m | scaffold_4 | 1531262 | 1535758 | C_unshiu_00012:mRNA_96.1 | C_unshiu_00012 | 704342 | 708725 | Multiple inositol polyphosphate phosphatase 1 | AGI-07 | 12.283 | |||||||||||
| Cp0039 | O | - | - | - | - | - | Ciclev10032929m | scaffold_4 | 1549679 | 1551396 | C_unshiu_00012:mRNA_98.1 | C_unshiu_00012 | 722822 | 724539 | LOB domain-containing protein 12 | AGI-07 | 11.882 | |||||||||||
| Al0617 | AAvailable marker | O | - | - | - | O | O | Ciclev10033546m | scaffold_4 | 1021179 | 1023023 | C_unshiu_00012:mRNA_24.1 | C_unshiu_00012 | 188654 | 191971 | Ubiquitin-binding WIYLD domain protein | AGI-07 | 8.553 | JtR-07 | 74.121 | ||||||||
| Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | Ciclev10031860m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
| Af1623 | - | - | - | - | - | - | Ciclev10032683m | scaffold_4 | 612480 | 615318 | C_unshiu_01079:mRNA_2.2 | C_unshiu_01079 | 3136 | 5814 | Thylakoid lumenal 15 kDa protein 1, chloroplastic | AGI-07 | 7.907 | |||||||||||
| Tf0410 | AAvailable marker | O | - | - | - | O | O | Ciclev10032838m | scaffold_4 | 213798 | 215848 | C_unshiu_00168:mRNA_34.1 | C_unshiu_00168 | 273522 | 275858 | Pollen-specific protein SF3 | AGI-07 | 6.146 | ||||||||||
| Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | Ciclev10031723m | scaffold_4 | 115362 | 118025 | C_unshiu_02038:mRNA_4.1 | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
| Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | Ciclev10031974m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
| Em0005 | Fb1892.em | - | - | - | - | - | - | C_unshiu_00168:mRNA_8.1 | C_unshiu_00168 | 76386 | 80254 | BEL1-like homeodomain protein 9 | AGI-07 | |||||||||||||||
| Af1636 | - | - | - | - | - | - | Ciclev10016216m | scaffold_2 | 6611813 | 6619116 | C_unshiu_00072:mRNA_53.1 | C_unshiu_00072 | 416072 | 423443 | Zinc transporter ZTP29 | AGI-06 | 150.228 | |||||||||||
| Bf0161 | - | - | - | - | - | - | SI089,SI348 | Ciclev10015189m | scaffold_2 | 6658003 | 6660691 | C_unshiu_00072:mRNA_47.1 | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
| Bf0116 | - | - | - | - | - | - | SI260 | Ciclev10015490m | scaffold_2 | 7662753 | 7667440 | C_unshiu_00729:mRNA_11.1 | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
| Bf0212 | - | - | - | - | - | - | SI332 | Ciclev10016442m | scaffold_2 | 9206686 | 9211152 | C_unshiu_00004:mRNA_52.2 | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
| Tf0455 | OOthers | O | - | - | - | - | - | Ciclev10017004m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
| Tf0264 | AAvailable marker | O | - | - | - | O | O | Ciclev10015873m | scaffold_2 | 248256 | 250675 | C_unshiu_00109:mRNA_29.1 | C_unshiu_00109 | 175776 | 179005 | GAN | AGI-06 | 103.728 | ||||||||||
| Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | Ciclev10014804m | scaffold_2 | 14143537 | 14146003 | C_unshiu_00466:mRNA_1.1 | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
| Ov0525 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10015260m | scaffold_2 | 15833142 | 15836770 | C_unshiu_01875:mRNA_4.1 | C_unshiu_01875 | 35983 | 39196 | ADP/ATP translocase 1 | AGI-06 | 91.522 | SA-06 | 27.092 | ||||||||
| Af1111 | - | - | - | - | - | - | Ciclev10015086m | scaffold_2 | 23021193 | 23023457 | C_unshiu_00172:mRNA_31.1 | C_unshiu_00172 | 270783 | 273047 | Glucan endo-1,3-beta-glucosidase 13 | AGI-06 | 83.445 | |||||||||||
| Cp1216 | AAvailable marker | - | - | - | - | O | O | Ciclev10017113m | scaffold_2 | 12112790 | 12113903 | C_unshiu_00026:mRNA_6.1 | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
| Cp0459 | - | - | - | - | - | - | Ciclev10016822m | scaffold_2 | 27549660 | 27551146 | C_unshiu_00017:mRNA_86.1 | C_unshiu_00017 | 707192 | 708314 | NADH dehydrogenase-like complex L | AGI-06 | 74.140 | |||||||||||
| Cp0026 | - | - | - | - | - | - | Ciclev10014741m | scaffold_2 | 24938686 | 24943643 | C_unshiu_00472:mRNA_8.1 | C_unshiu_00472 | 85278 | 89618 | Putative ADP-glucose pyrophosphorylase small subunit | AGI-06 | 72.449 | |||||||||||
| Al0635 | AAvailable marker | - | - | - | - | O | O | Ciclev10015354m | scaffold_2 | 26435540 | 26438838 | C_unshiu_00197:mRNA_27.1 | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
| Al0224 | AAvailable marker | - | O | - | - | O | O | Ciclev10015872m | scaffold_2 | 26630154 | 26632900 | C_unshiu_00262:mRNA_19.1 | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
| Af1056 | - | - | - | - | - | - | Ciclev10015905m | scaffold_2 | 26595972 | 26598955 | C_unshiu_00262:mRNA_14.1 | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
| Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | Ciclev10016280m | scaffold_2 | 23891814 | 23893095 | C_unshiu_00081:mRNA_50.1 | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
| Af1593 | - | - | - | - | - | - | Ciclev10015971m | scaffold_2 | 27738397 | 27741912 | C_unshiu_00745:mRNA_8.1 | C_unshiu_00745 | 82265 | 85742 | Prolactin regulatory element-binding protein, putative | AGI-06 | 61.501 | |||||||||||
| Cp0431 | AAvailable marker | O | - | - | - | O | O | Ciclev10015731m | scaffold_2 | 27084177 | 27089027 | C_unshiu_00017:mRNA_35.1 | C_unshiu_00017 | 248152 | 252850 | E3 ubiquitin protein ligase RIE1 | AGI-06 | 60.660 | ||||||||||
| Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | Ciclev10018252m | scaffold_2 | 27774863 | 27778271 | C_unshiu_00745:mRNA_6.1 | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
| Af1042 | O | - | - | - | - | - | Ciclev10017429m | scaffold_2 | 28786444 | 28788097 | No | AGI-06 | 55.700 | |||||||||||||||
| Cp0214 | OOthers | - | - | - | - | - | - | Ciclev10016075m | scaffold_2 | 29732249 | 29735969 | C_unshiu_00073:mRNA_25.1 | C_unshiu_00073 | 178507 | 182191 | MOSC domain-containing protein 2, mitochondrial | AGI-06 | 46.660 | ||||||||||
| Tf0343 | AtAvailable marker | O | - | - | - | O | O | Ciclev10016587m | scaffold_2 | 29204680 | 29206501 | C_unshiu_00022:mRNA_67.1 | C_unshiu_00022 | 489282 | 490950 | High mobility group B protein 7 | AGI-06 | 44.393 | ||||||||||
| Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | Ciclev10015053m | scaffold_2 | 31036088 | 31038222 | C_unshiu_00143:mRNA_11.1 | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
| Mf0083 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10015092m | scaffold_2 | 33837403 | 33842156 | No | AGI-06 | 39.963 | ||||||||||||||
| Tf0432 | AAvailable marker | O | - | - | - | O | O | Ciclev10016685m | scaffold_2 | 31420457 | 31425299 | C_unshiu_00091:mRNA_39.1 | C_unshiu_00091 | 370141 | 375026 | Nuclear transcription factor Y subunit A-7 | AGI-06 | 38.958 | ||||||||||
| Af1312 | - | - | - | - | - | - | Ciclev10014367m | scaffold_2 | 29022433 | 29030537 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
| Wy0035 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10014857m | scaffold_2 | 31148849 | 31150616 | C_unshiu_00292:mRNA_13.1 | C_unshiu_00292 | 110620 | 112650 | FAD-binding Berberine family protein | AGI-06 | 36.863 | ||||||||||
| Wy0056 | Wy0056.em | AAvailable marker | - | - | - | - | O | O | Ciclev10014198m | scaffold_2 | 31740431 | 31747095 | C_unshiu_00027:mRNA_81.1 | C_unshiu_00027 | 521555 | 527308 | Auxin response factor | AGI-06 | 36.788 | |||||||||
| Af1693 | - | - | - | - | - | - | Ciclev10016657m | scaffold_2 | 32069149 | 32072079 | C_unshiu_00027:mRNA_31.2 | C_unshiu_00027 | 205885 | 208484 | DERLIN-2.2 isoform 1 | AGI-06 | 35.794 | |||||||||||
| Em0001 | - | - | - | - | - | - | Ciclev10016968m | scaffold_2 | 31927342 | 31929229 | C_unshiu_00027:mRNA_54.1 | C_unshiu_00027 | 345067 | 346727 | 50S ribosomal protein L14, chloroplastic | AGI-06 | 35.643 | |||||||||||
| Af1321 | - | - | - | - | - | - | Ciclev10009751m | scaffold_1 | 16371168 | 16375666 | C_unshiu_00108:mRNA_25.1 | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
| Tf0004 | - | - | - | - | - | - | SI219,SI330 | Ciclev10014045m | scaffold_2 | 33074821 | 33084014 | C_unshiu_00153:mRNA_7.1 | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
| Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | Ciclev10016009m | scaffold_2 | 33216839 | 33219042 | C_unshiu_00002:mRNA_211.1 | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
| Cp0190 | OOthers | - | - | - | - | - | - | Ciclev10023646m | scaffold_3 | 18648426 | 18650443 | C_unshiu_00618:mRNA_5.1 | C_unshiu_00618 | 20273 | 22297 | UPF0426 protein, chloroplastic | AGI-06 | 27.617 | ||||||||||
| Cp0537 | AAvailable marker | O | - | - | - | O | O | Ciclev10016779m | scaffold_2 | 34189216 | 34193815 | C_unshiu_00002:mRNA_71.2 | C_unshiu_00002 | 543564 | 547918 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 | AGI-06 | 25.930 | ||||||||||
| Tf0344 | AAvailable marker | O | - | - | - | O | O | Ciclev10016433m | scaffold_2 | 34624236 | 34631123 | C_unshiu_00002:mRNA_17.1 | C_unshiu_00002 | 124392 | 131264 | Floral homeotic protein AGAMOUS | AGI-06 | 24.216 | ||||||||||
| Af1580 | - | - | - | - | - | - | Ciclev10016368m | scaffold_2 | 35013848 | 35015439 | C_unshiu_00048:mRNA_76.1 | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
| Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | Ciclev10015483m | scaffold_2 | 35212691 | 35214865 | C_unshiu_00048:mRNA_50.1 | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
| Gn0061.2 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10031014m | scaffold_4 | 25500601 | 25505812 | C_unshiu_00001:mRNA_343.1 | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-06 | 20.248 | ||||||||||
| If0002 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10016861m | scaffold_2 | 35546692 | 35549207 | C_unshiu_01497:mRNA_3.1 | C_unshiu_01497 | 10215 | 14601 | YggS family pyridoxal phosphate enzyme | AGI-06 | 19.002 | KmG-06 | 62.901 | ||||||||
| Cp0384 | AAvailable marker | O | - | - | - | O | O | Ciclev10015162m | scaffold_2 | 35422598 | 35425980 | C_unshiu_00048:mRNA_23.2 | C_unshiu_00048 | 111764 | 114820 | APS reductase | AGI-06 | 19.002 | ||||||||||
| Tf0119 | AAvailable marker | - | - | - | - | O | O | Ciclev10014416m | scaffold_2 | 35564238 | 35570619 | C_unshiu_01497:mRNA_5.1 | C_unshiu_01497 | 20297 | 33375 | Hypothetical protein | AGI-06 | 19.002 | ||||||||||
| If0003 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI130 | Ciclev10015433m | scaffold_2 | 35470078 | 35472862 | C_unshiu_00048:mRNA_13.1 | C_unshiu_00048 | 64652 | 67377 | Aminomethyltransferase | AGI-06 | 18.136 | JtR-06S | 67.371 | |||||||
| Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | Ciclev10014319m | scaffold_2 | 35354776 | 35363026 | C_unshiu_00048:mRNA_32.1 | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
| Cp0635 | AAvailable marker | O | - | O | - | O | O | C_unshiu_00337:mRNA_4.1 | C_unshiu_00337 | 11596 | 15307 | 50S ribosomal protein L4 | AGI-06 | 17.029 | ||||||||||||||
| Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10015934m | scaffold_2 | 35693249 | 35696515 | C_unshiu_00337:mRNA_13.1 | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
| Fb0104 | OOthers | O | - | - | - | - | - | Ciclev10016358m | scaffold_2 | 35758546 | 35760859 | C_unshiu_00337:mRNA_24.1 | C_unshiu_00337 | 135198 | 136991 | Tropinone reductase like | AGI-06 | 16.857 | RP-06.2 | 16.271 | ||||||||
| Vt0001 | AAvailable marker | - | - | - | - | O | O | Ciclev10014290m | scaffold_2 | 35624935 | 35628855 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
| Tf0330 | - | - | - | - | - | - | SI064,SI139 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
| Gn0073 | AAvailable marker | O | O | - | - | O | O | Ciclev10014770m | scaffold_2 | 35895662 | 35898841 | C_unshiu_00077:mRNA_4.1 | C_unshiu_00077 | 30410 | 32987 | Tonoplast dicarboxylate transporter | AGI-06 | 12.402 | ||||||||||
| Tf0402 | - | - | - | - | - | - | Ciclev10015893m | scaffold_2 | 36211961 | 36216858 | C_unshiu_00077:mRNA_57.1 | C_unshiu_00077 | 335424 | 340163 | MYB-CC type transfactor | AGI-06 | 9.560 | |||||||||||
| Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016069m | scaffold_2 | 32640743 | 32643349 | C_unshiu_00070:mRNA_53.1 | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
| Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | Ciclev10019665m | scaffold_3 | 50861813 | 50866146 | C_unshiu_00206:mRNA_42.1 | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
| Fb1567 | - | - | - | - | - | - | Ciclev10022690m | scaffold_3 | 50637673 | 50640392 | No | AGI-05 | 103.212 | |||||||||||||||
| Al0039 | - | - | - | - | - | - | C_unshiu_00018:mRNA_107.1 | C_unshiu_00018 | 723553 | 725648 | Bifunctional protein FolD | AGI-05 | 95.305 | |||||||||||||||
| Wy0005 | DDominant marker | O | - | - | - | - | - | Ciclev10019927m | scaffold_3 | 48337105 | 48339028 | No | AGI-05 | 83.570 | KmG-05S | 122.932 | ||||||||||||
| Tf0279 | - | - | - | - | - | - | SI073 | Ciclev10019219m | scaffold_3 | 49031441 | 49035202 | C_unshiu_00018:mRNA_78.1 | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | AGI-05 | 80.539 | ||||||||||
| Bf0146 | O | - | - | - | - | - | Ciclev10022345m | scaffold_3 | 48528820 | 48531316 | C_unshiu_00026:mRNA_37.1 | C_unshiu_00026 | 280361 | 282836 | RRNA-processing protein FCF1 | AGI-05 | 78.274 | |||||||||||
| Gmom04 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
| Gmom16 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
| Tf0370 | - | - | - | - | - | - | Ciclev10019820m | scaffold_3 | 47121093 | 47124518 | C_unshiu_00023:mRNA_20.1 | C_unshiu_00023 | 123134 | 131389 | Hypothetical protein | AGI-05 | 69.117 | |||||||||||
| Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | Ciclev10022482m | scaffold_3 | 46814909 | 46817474 | C_unshiu_00053:mRNA_57.3 | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
| Af1470 | - | - | - | - | - | - | Ciclev10023233m | scaffold_3 | 46380264 | 46381057 | No | AGI-05 | 62.767 | |||||||||||||||
| Cp1427 | AAvailable marker | - | - | - | - | O | O | Ciclev10021746m | scaffold_3 | 45576863 | 45579197 | C_unshiu_00326:mRNA_5.1 | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
| Tf0184 | AAvailable marker | O | - | - | - | O | O | Ciclev10019968m | scaffold_3 | 45393857 | 45398298 | C_unshiu_00546:mRNA_8.1 | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
| Tf0309 | - | - | - | - | - | - | SI190 | Ciclev10020466m | scaffold_3 | 45314016 | 45316651 | C_unshiu_00546:mRNA_23.1 | C_unshiu_00546 | 158416 | 160829 | TLP domain class transcription factor | AGI-05 | 57.948 | ||||||||||
| Mf0055 | DDominant marker | - | - | - | - | O | O | Ciclev10022212m | scaffold_3 | 45551345 | 45552620 | C_unshiu_01674:mRNA_4.1 | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
| Al0308 | - | - | - | - | - | - | SI045 | Ciclev10028262m | scaffold_8 | 24521116 | 24524868 | C_unshiu_00021:mRNA_97.1 | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
| Al0614 | - | - | - | - | - | - | Ciclev10022348m | scaffold_3 | 44987719 | 44991534 | C_unshiu_00069:mRNA_32.1 | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
| Mf0041 | AAvailable marker | - | - | - | - | O | O | Ciclev10022012m | scaffold_3 | 45076821 | 45080633 | C_unshiu_00069:mRNA_16.1 | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
| Af1685 | - | - | - | - | - | - | Ciclev10023782m | scaffold_3 | 40086985 | 40089114 | C_unshiu_00335:mRNA_9.1 | C_unshiu_00335 | 76164 | 77436 | Hypothetical protein | AGI-05 | 56.481 | |||||||||||
| Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10023016m | scaffold_3 | 42954362 | 42955051 | C_unshiu_00152:mRNA_28.1 | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
| Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021936m | scaffold_3 | 44202968 | 44205663 | C_unshiu_00217:mRNA_35.1 | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
| Tf0300 | AAvailable marker | O | O | - | - | O | O | Ciclev10022370m | scaffold_3 | 43862440 | 43863744 | C_unshiu_01051:mRNA_10.1 | C_unshiu_01051 | 83417 | 84406 | Auxin-induced protein IAA4 | AGI-05 | 54.726 | ||||||||||
| Af0015 | - | - | - | - | - | - | Ciclev10019449m | scaffold_3 | 44021779 | 44027536 | C_unshiu_00217:mRNA_10.1 | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
| Tf0280 | - | - | - | - | - | - | SI158,SI200 | Ciclev10025566m | scaffold_7 | 3429964 | 3433239 | C_unshiu_00301:mRNA_24.3 | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
| Tf0068 | - | - | - | - | - | - | SI106 | Ciclev10020724m | scaffold_3 | 44141305 | 44144453 | C_unshiu_00217:mRNA_25.1 | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
| Cp0030 | O | - | - | - | - | - | Ciclev10019700m | scaffold_3 | 43815647 | 43818118 | C_unshiu_00869:mRNA_1.1 | C_unshiu_00869 | 176 | 1664 | Phospholipase A1-Igamma1, chloroplastic | AGI-05 | 53.642 | |||||||||||
| Tf0036 | AAvailable marker | O | - | - | - | O | O | Ciclev10022032m | scaffold_3 | 43850269 | 43852816 | C_unshiu_01051:mRNA_11.1 | C_unshiu_01051 | 94369 | 96339 | Auxin-responsive protein IAA14 | AGI-05 | 53.260 | ||||||||||
| Af1091 | O | - | - | - | - | - | Ciclev10021043m | scaffold_3 | 43316046 | 43317909 | C_unshiu_00411:mRNA_2.1 | C_unshiu_00411 | 11510 | 13352 | Arabinose 5-phosphate isomerase | AGI-05 | 52.655 | |||||||||||
| Tf0351 | - | - | - | - | - | - | SI122 | Ciclev10021622m | scaffold_3 | 43472094 | 43473220 | C_unshiu_00411:mRNA_17.1 | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
| Tf0256 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021699m | scaffold_3 | 43420187 | 43422432 | C_unshiu_00411:mRNA_13.1 | C_unshiu_00411 | 116444 | 118424 | Myb-related protein Myb4 | AGI-05 | 52.314 | ||||||||||
| Cp1815 | OOthers | - | - | - | - | - | - | Ciclev10022373m | scaffold_3 | 8256398 | 8257886 | C_unshiu_00154:mRNA_28.1 | C_unshiu_00154 | 274299 | 275412 | Wiskott-Aldrich syndrome protein family member 2 | AGI-05 | 51.501 | ||||||||||
| If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10022993m | scaffold_3 | 42229224 | 42231230 | C_unshiu_00322:mRNA_21.1 | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
| Af1096 | - | - | - | - | - | - | Ciclev10020597m | scaffold_3 | 42061488 | 42063267 | C_unshiu_00778:mRNA_10.1 | C_unshiu_00778 | 89741 | 91509 | Cytochrome P450 82A4 | AGI-05 | 51.052 | |||||||||||
| Cp0781 | AAvailable marker | - | - | - | - | O | O | Ciclev10021469m | scaffold_3 | 41043663 | 41046480 | C_unshiu_00305:mRNA_28.1 | C_unshiu_00305 | 251599 | 254198 | Thioredoxin-like 7 family protein | AGI-05 | 50.294 | ||||||||||
| Fb2159 | - | - | - | - | - | - | SI205,SI300 | Ciclev10021136m | scaffold_3 | 39606431 | 39608387 | C_unshiu_00037:mRNA_76.1 | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
| Al0003 | Al0003.2 | - | - | - | - | - | - | Ciclev10024637m | scaffold_3 | 41697052 | 41697860 | C_unshiu_01778:mRNA_2.1 | C_unshiu_01778 | 27362 | 28139 | Dehydrin COR15 | AGI-05 | 49.499 | ||||||||||
| Af1068 | O | - | - | - | - | - | Ciclev10021732m | scaffold_3 | 40110008 | 40113420 | C_unshiu_00335:mRNA_13.1 | C_unshiu_00335 | 99790 | 103133 | Protein vip1 | AGI-05 | 48.750 | |||||||||||
| Al0605 | OOthers | - | - | - | - | - | - | Ciclev10022151m | scaffold_3 | 41434064 | 41437122 | C_unshiu_00194:mRNA_5.1 | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
| Tf0411 | OOthers | O | - | - | - | - | - | Ciclev10020263m | scaffold_3 | 38111191 | 38116265 | C_unshiu_00523:mRNA_15.1 | C_unshiu_00523 | 100297 | 104594 | Putative transcription factor PosF21 | AGI-05 | 48.613 | ||||||||||
| Lp0133 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021187m | scaffold_3 | 39657613 | 39660222 | C_unshiu_00037:mRNA_84.1 | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
| Cp0047 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10021599m | scaffold_3 | 40918148 | 40922656 | C_unshiu_00735:mRNA_16.1 | C_unshiu_00735 | 120088 | 124350 | Hypothetical protein | AGI-05 | 48.590 | ||||||||||
| Af1109 | - | - | - | - | - | - | C_unshiu_00194:mRNA_16.1 | C_unshiu_00194 | 96415 | 98120 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | AGI-05 | 48.590 | |||||||||||||||
| Tf0081 | - | - | - | - | - | - | SI038,SI324 | Ciclev10021980m | scaffold_3 | 38214468 | 38216861 | C_unshiu_00575:mRNA_8.1 | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
| Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | Ciclev10020717m | scaffold_3 | 40963774 | 40965744 | C_unshiu_00735:mRNA_9.1 | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
| Af1576 | - | - | - | - | - | - | Ciclev10018636m | scaffold_3 | 41566338 | 41572373 | No | AGI-05 | 47.986 | |||||||||||||||
| Ov0005 | AAvailable marker | - | - | - | - | O | O | SI243,SI331 | Ciclev10019557m | scaffold_3 | 41636616 | 41641083 | C_unshiu_02126:mRNA_2.1 | C_unshiu_02126 | 9391 | 13319 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | AGI-05 | 47.986 | |||||||||
| Tf0012 | AAvailable marker | - | - | - | - | O | O | Ciclev10018673m | scaffold_3 | 37601493 | 37607586 | C_unshiu_00502:mRNA_21.1 | C_unshiu_00502 | 155419 | 162660 | Protein NLP8 | AGI-05 | 47.173 | ||||||||||
| Lp0207 | O | - | - | - | - | - | Ciclev10021695m | scaffold_3 | 6140332 | 6142252 | C_unshiu_01103:mRNA_8.1 | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
| Fb1678 | O | - | - | - | - | - | Ciclev10022198m | scaffold_3 | 6000266 | 6002833 | C_unshiu_00997:mRNA_6.2 | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
| Lp0143 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10019139m | scaffold_3 | 6076949 | 6080875 | C_unshiu_00159:mRNA_40.1 | C_unshiu_00159 | 339926 | 343475 | Translation elongation factor G | AGI-05 | 45.297 | JtR-05 | 18.056 | ||||||||
| Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | Ciclev10021287m | scaffold_3 | 7047024 | 7049430 | C_unshiu_00425:mRNA_7.1 | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
| Cp1268 | - | - | - | - | - | - | Ciclev10021861m | scaffold_3 | 7327436 | 7329167 | C_unshiu_00199:mRNA_13.1 | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
| Mf0017 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | AGI-05 | 44.674 | ||||||||||
| Fb0369 | - | - | - | - | - | - | Ciclev10019885m | scaffold_3 | 7792188 | 7795727 | C_unshiu_01545:mRNA_3.1 | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
| Bf0177 | - | - | - | - | - | - | SI060 | Ciclev10022075m | scaffold_3 | 8186689 | 8189902 | C_unshiu_00154:mRNA_43.2 | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
| Bf0402 | - | - | - | - | - | - | Ciclev10020232m | scaffold_3 | 9137249 | 9144663 | C_unshiu_00058:mRNA_19.1 | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
| Tf0268 | AAvailable marker | O | - | - | - | O | O | Ciclev10021157m | scaffold_3 | 10140904 | 10142752 | C_unshiu_00149:mRNA_29.1 | C_unshiu_00149 | 326478 | 328059 | Transcription factor MYB21 | AGI-05 | 43.800 | ||||||||||
| Gn0027 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | AGI-05 | 43.412 | |||||||||||||||||||
| Lp0235 | O | - | - | - | - | - | Ciclev10019848m | scaffold_3 | 9466071 | 9468445 | C_unshiu_00227:mRNA_19.1 | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
| Tf0350 | OOthers | O | - | - | - | - | - | SI132 | Ciclev10019034m | scaffold_3 | 8914744 | 8921411 | C_unshiu_00695:mRNA_7.1 | C_unshiu_00695 | 71483 | 77987 | Acetyl-coenzyme A synthetase | AGI-05 | 43.295 | |||||||||
| Af1036 | O | - | - | - | - | - | Ciclev10021080m | scaffold_3 | 7016831 | 7019863 | C_unshiu_00425:mRNA_11.1 | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
| Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | Ciclev10020840m | scaffold_3 | 30648732 | 30651259 | C_unshiu_00759:mRNA_1.1 | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
| Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | Ciclev10022558m | scaffold_3 | 6409311 | 6411254 | C_unshiu_00443:mRNA_7.1 | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
| Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | Ciclev10019826m | scaffold_3 | 6502231 | 6504139 | C_unshiu_00521:mRNA_1.1 | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
| Tf0053 | - | - | - | - | - | - | SI305 | Ciclev10022321m | scaffold_3 | 29153425 | 29156189 | C_unshiu_01169:mRNA_3.1 | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
| Tf0011.2 | OOthers | O | - | - | - | - | - | Ciclev10018614m | scaffold_3 | 11078798 | 11089090 | C_unshiu_02207:mRNA_3.1 | C_unshiu_02207 | 9802 | 19021 | Hypothetical protein | AGI-05 | 42.191 | ||||||||||
| Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | Ciclev10019364m | scaffold_3 | 29351854 | 29354190 | C_unshiu_00549:mRNA_6.1 | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
| Cp0540 | - | - | - | - | - | - | Ciclev10020181m | scaffold_3 | 10427313 | 10435293 | C_unshiu_02340:mRNA_1.1 | C_unshiu_02340 | 2005 | 8306 | DNA repair protein reca, putative | AGI-05 | 42.191 | |||||||||||
| Cp0532 | - | - | - | - | - | - | Ciclev10020319m | scaffold_3 | 30393811 | 30398972 | C_unshiu_00501:mRNA_15.1 | C_unshiu_00501 | 133280 | 137847 | Solanesyl diphosphate synthase | AGI-05 | 42.168 | |||||||||||
| Tf0001.2 | AAvailable marker | O | O | O | - | O | O | Ciclev10020248m | scaffold_3 | 8647529 | 8652282 | C_unshiu_00580:mRNA_10.1 | C_unshiu_00580 | 75118 | 81473 | Transcription factor BIM1 | AGI-05 | 41.893 | ||||||||||
| Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | Ciclev10022680m | scaffold_3 | 8528292 | 8529236 | C_unshiu_00154:mRNA_1.1 | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
| Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | Ciclev10022215m | scaffold_3 | 13810497 | 13813004 | C_unshiu_00542:mRNA_3.1 | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
| Bf0184 | O | - | - | - | - | - | Ciclev10021248m | scaffold_3 | 24893551 | 24898675 | C_unshiu_00286:mRNA_27.1 | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
| Af0016 | - | - | - | - | - | - | Ciclev10022861m | scaffold_3 | 25074163 | 25075916 | C_unshiu_00117:mRNA_7.1 | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Vt0011 | AAvailable marker | - | - | - | - | O | O | Ciclev10021162m | scaffold_3 | 12984411 | 12986574 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
| Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10019489m | scaffold_3 | 24840386 | 24845254 | C_unshiu_00286:mRNA_25.1 | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
| Af1047 | - | - | - | - | - | - | Ciclev10019002m | scaffold_3 | 16357227 | 16363309 | C_unshiu_01252:mRNA_3.1 | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
| Af1086 | - | - | - | - | - | - | Ciclev10031563m | scaffold_4 | 10510018 | 10517939 | C_unshiu_00028:mRNA_1.2 | C_unshiu_00028 | 4115 | 12036 | AP-2 complex subunit mu | AGI-05 | 41.306 | |||||||||||
| Af1087 | O | - | - | - | - | - | Ciclev10019689m | scaffold_3 | 24796351 | 24800588 | C_unshiu_00286:mRNA_17.1 | C_unshiu_00286 | 132648 | 135466 | Glycine hydroxymethyltransferase | AGI-05 | 41.306 | |||||||||||
| Bf0104 | O | - | - | - | - | - | C_unshiu_01101:mRNA_8.1 | C_unshiu_01101 | 77694 | 80951 | 12-oxophytodienoate reductase 2 | AGI-05 | 41.306 | NAT-05 | ||||||||||||||
| Tf0122 | - | - | - | - | - | - | Ciclev10020009m | scaffold_3 | 24620623 | 24627357 | C_unshiu_02869:mRNA_1.1 | C_unshiu_02869 | 1885 | 10204 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Cp1627 | AAvailable marker | - | - | - | - | O | O | Ciclev10022024m | scaffold_3 | 13309398 | 13310636 | C_unshiu_00431:mRNA_6.1 | C_unshiu_00431 | 44507 | 45451 | Chloroplast small heat shock protein | AGI-05 | 41.272 | ||||||||||
| Cp1628 | - | - | - | - | - | - | Ciclev10021963m | scaffold_3 | 12822911 | 12825620 | C_unshiu_02666:mRNA_2.1 | C_unshiu_02666 | 10104 | 12687 | Rhodanese/cell cycle control phosphatase superfamily protein | AGI-05 | 41.272 | |||||||||||
| Cp0160 | - | - | - | - | - | - | Ciclev10019883m | scaffold_3 | 21940551 | 21944032 | C_unshiu_00272:mRNA_20.1 | C_unshiu_00272 | 187755 | 191248 | Endoglucanase | AGI-05 | 41.267 | |||||||||||
| Tf0153 | AAvailable marker | O | - | - | - | O | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | AGI-05 | 41.267 | ||||||||||
| Cp1483 | - | - | - | - | - | - | Ciclev10020574m | scaffold_3 | 20762974 | 20770394 | C_unshiu_00692:mRNA_14.1 | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
| Tf0375 | - | - | - | - | - | - | Ciclev10022365m | scaffold_3 | 13034654 | 13036082 | C_unshiu_00020:mRNA_62.1 | C_unshiu_00020 | 527751 | 528816 | Homeobox leucine zipper protein | AGI-05 | 40.558 | |||||||||||
| Cp1556 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10018756m | scaffold_3 | 21432494 | 21440948 | C_unshiu_00175:mRNA_9.1 | C_unshiu_00175 | 91338 | 99600 | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic | AGI-05 | 40.337 | ||||||||||
| Gn0056 | - | - | - | - | - | - | Ciclev10020582m | scaffold_3 | 28382218 | 28386683 | C_unshiu_00585:mRNA_5.1 | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | AGI-05 | 39.424 | |||||||||||
| Bf0024 | O | - | - | - | - | - | SI093 | Ciclev10002093m | scaffold_5 | 38134662 | 38138860 | C_unshiu_00319:mRNA_24.1 | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
| Tf0083 | - | - | - | - | - | - | SI129 | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Tf0420 | AAvailable marker | O | O | O | - | O | O | Ciclev10022018m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Cp0076 | O | - | - | - | - | - | Ciclev10021577m | scaffold_3 | 6329133 | 6332201 | C_unshiu_01248:mRNA_3.1 | C_unshiu_01248 | 39031 | 42057 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-05 | 35.411 | |||||||||||
| Cp0073 | O | - | - | - | - | - | Ciclev10020501m | scaffold_3 | 5972288 | 5978062 | C_unshiu_00997:mRNA_9.1 | C_unshiu_00997 | 69257 | 75059 | Transaldolase | AGI-05 | 34.924 | |||||||||||
| Af1452 | - | - | - | - | - | - | Ciclev10018443m | scaffold_3 | 5518457 | 5529974 | C_unshiu_00900:mRNA_3.1 | C_unshiu_00900 | 20186 | 30140 | Pheromone-processing carboxypeptidase kex1 | AGI-05 | 29.863 | |||||||||||
| Al0624 | - | - | - | - | - | - | Ciclev10021584m | scaffold_3 | 42647413 | 42652459 | C_unshiu_01228:mRNA_6.1 | C_unshiu_01228 | 43617 | 48513 | Tetraspanin family protein | AGI-05 | 29.354 | |||||||||||
| Cp1533 | - | - | - | - | - | - | Ciclev10021868m | scaffold_3 | 4831751 | 4834270 | C_unshiu_00768:mRNA_14.1 | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
| Gn0050 | - | - | - | - | - | - | Ciclev10024602m | scaffold_3 | 5382490 | 5385009 | C_unshiu_00014:mRNA_87.1 | C_unshiu_00014 | 637698 | 638678 | CRT binding factor 3 | AGI-05 | 29.035 | KmG-05S | 21.884 | JtR-05 | 19.008 | |||||||
| Af1679 | - | - | - | - | - | - | Ciclev10021896m | scaffold_3 | 4260126 | 4262819 | C_unshiu_00186:mRNA_34.1 | C_unshiu_00186 | 288266 | 290432 | Adenylate kinase | AGI-05 | 29.035 | |||||||||||
| Bf0158 | - | O | - | O | - | - | SI376 | Ciclev10021285m | scaffold_3 | 5253281 | 5254755 | C_unshiu_00795:mRNA_3.1 | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
| Bf0165 | - | - | - | - | - | - | SI280 | Ciclev10021901m | scaffold_3 | 4903592 | 4905871 | C_unshiu_00628:mRNA_6.1 | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
| Wy0018 | AAvailable marker | - | - | - | - | O | O | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
| Tf0017 | - | - | - | - | - | - | SI285 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | AGI-05 | 28.617 | ||||||||||
| Af1396 | - | - | - | - | - | - | Ciclev10022545m | scaffold_3 | 4920662 | 4923421 | C_unshiu_00520:mRNA_16.2 | C_unshiu_00520 | 166824 | 167867 | Ribosomal protein L19 family protein | AGI-05 | 28.041 | |||||||||||
| Af1453 | - | - | - | - | - | - | Ciclev10023068m | scaffold_3 | 4663211 | 4664667 | C_unshiu_01589:mRNA_7.1 | C_unshiu_01589 | 29063 | 37936 | Hypothetical protein | AGI-05 | 27.956 | |||||||||||
| Tf0294 | AAvailable marker | O | - | - | - | O | O | Ciclev10021365m | scaffold_3 | 4794701 | 4799518 | C_unshiu_00135:mRNA_58.2 | C_unshiu_00135 | 398519 | 403121 | Ureidoglycine aminohydrolase isoform 1 | AGI-05 | 27.135 | ||||||||||
| Cp2229 | AAvailable marker | - | - | - | - | O | O | Ciclev10022058m | scaffold_3 | 4117485 | 4120274 | C_unshiu_00318:mRNA_6.1 | C_unshiu_00318 | 44376 | 47085 | Nucleoside diphosphate kinase | AGI-05 | 27.135 | ||||||||||
| Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_02110:mRNA_3.2 | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
| Tf0051 | - | - | - | - | - | - | SI027,SI214 | Ciclev10021952m | scaffold_3 | 3964036 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-05 | 25.590 | ||||||||||
| Cp2223 | OOthers | - | - | - | - | - | - | Ciclev10022371m | scaffold_3 | 3483334 | 3485637 | C_unshiu_00933:mRNA_9.1 | C_unshiu_00933 | 86958 | 89273 | Protein LATERAL ORGAN BOUNDARIES | AGI-05 | 25.049 | ||||||||||
| Bf0174 | O | - | - | - | - | - | SI282 | Ciclev10019861m | scaffold_3 | 3551542 | 3555978 | C_unshiu_00120:mRNA_17.1 | C_unshiu_00120 | 130029 | 134158 | Atp-dependent RNA helicase | AGI-05 | 25.049 | ||||||||||
| Af1253 | - | - | - | - | - | - | Ciclev10020405m | scaffold_3 | 3201206 | 3204377 | C_unshiu_00163:mRNA_29.1 | C_unshiu_00163 | 211551 | 214568 | Phosphate/phosphoenolpyruvate translocator | AGI-05 | 24.709 | |||||||||||
| Af1149 | - | - | - | - | - | - | Ciclev10025360m | scaffold_7 | 12985954 | 12989228 | C_unshiu_02261:mRNA_2.1 | C_unshiu_02261 | 19156 | 21966 | Glycerol kinase | AGI-05 | 21.630 | |||||||||||
| Cp1598 | AAvailable marker | - | - | - | - | O | O | Ciclev10021001m | scaffold_3 | 3802387 | 3805494 | C_unshiu_00849:mRNA_13.2 | C_unshiu_00849 | 72935 | 75824 | 31 kDa ribonucleoprotein | AGI-05 | 12.715 | ||||||||||
| Tf0152 | AAvailable marker | O | - | - | - | O | O | Ciclev10021000m | scaffold_3 | 2002427 | 2008126 | C_unshiu_01105:mRNA_2.1 | C_unshiu_01105 | 3681 | 8106 | AT-hook motif nuclear localized protein 1 | AGI-05 | 8.506 | ||||||||||
| Gmom03 | - | - | - | - | - | - | Ciclev10019436m | scaffold_3 | 1864604 | 1871328 | C_unshiu_01325:mRNA_3.1 | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
| Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | C_unshiu_00343:mRNA_25.1 | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
| Tf0342 | - | - | - | - | - | - | SI151 | Ciclev10019088m | scaffold_3 | 1649410 | 1655963 | C_unshiu_00343:mRNA_23.1 | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
| Tf0010 | - | - | - | - | - | - | Ciclev10021038m | scaffold_3 | 1054257 | 1056078 | C_unshiu_00609:mRNA_18.1 | C_unshiu_00609 | 77883 | 79313 | Putative WRKY transcription factor 41 | AGI-05 | ||||||||||||
| Cp0278 | - | - | - | - | - | - | Ciclev10022561m | scaffold_3 | 24750794 | 24752907 | C_unshiu_00286:mRNA_8.1 | C_unshiu_00286 | 73068 | 81236 | Hypothetical protein | AGI-04 | 122.142 | |||||||||||
| Mf0084 | OOthers | - | - | - | - | - | - | SI383 | Ciclev10012898m | scaffold_6 | 40381 | 43868 | C_unshiu_01371:mRNA_1.1 | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
| Cp0974 | - | - | - | - | - | - | Ciclev10011578m | scaffold_6 | 8029488 | 8035109 | C_unshiu_00711:mRNA_6.1 | C_unshiu_00711 | 128510 | 138133 | Hypothetical protein | AGI-04 | 107.018 | |||||||||||
| Cp1308 | AAvailable marker | - | O | - | - | O | O | Ciclev10011420m | scaffold_6 | 6329421 | 6335005 | C_unshiu_00147:mRNA_29.1 | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
| Tf0224 | OOthers | O | - | - | - | - | - | Ciclev10011741m | scaffold_6 | 7785328 | 7796808 | C_unshiu_00104:mRNA_54.1 | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
| Mf0072 | AAvailable marker | - | - | - | - | O | O | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
| If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | C_unshiu_00046:mRNA_66.1 | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
| Cp0895 | AAvailable marker | - | - | - | - | O | O | Ciclev10011406m | scaffold_6 | 19241700 | 19246874 | C_unshiu_00089:mRNA_3.1 | C_unshiu_00089 | 9945 | 14749 | ATP-dependent RNA helicase | AGI-04 | 67.375 | ||||||||||
| Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | C_unshiu_00139:mRNA_45.1 | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
| Tf0075 | - | - | - | - | - | - | SI059,SI248 | Ciclev10010972m | scaffold_6 | 19142307 | 19156510 | C_unshiu_00089:mRNA_11.1 | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
| Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | Ciclev10010926m | scaffold_6 | 19105139 | 19113780 | C_unshiu_00089:mRNA_17.1 | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
| Wy0048 | Wy0048.k | - | - | - | - | - | - | Ciclev10010999m | scaffold_6 | 19900235 | 19904192 | C_unshiu_00043:mRNA_54.1 | C_unshiu_00043 | 424252 | 427984 | Putative receptor protein kinase TMK1 | AGI-04 | 63.371 | NAT-04 | 21.157 | ||||||||
| Ks9010 | AAvailable marker | - | - | - | - | O | O | Ciclev10007188m | scaffold_9 | 29460866 | 29463385 | C_unshiu_00056:mRNA_15.1 | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
| Bf0148 | - | - | - | - | - | - | Ciclev10012535m | scaffold_6 | 20133118 | 20134805 | No | AGI-04 | 62.325 | NAT-04 | 12.575 | |||||||||||||
| Tf0373 | - | - | - | - | - | - | SI088 | Ciclev10011502m | scaffold_6 | 21229813 | 21233537 | C_unshiu_00037:mRNA_60.1 | C_unshiu_00037 | 387538 | 391239 | Uridylate kinase, putative | AGI-04 | 61.716 | ||||||||||
| Cp1798 | AAvailable marker | - | - | - | - | O | O | Ciclev10012134m | scaffold_6 | 20319677 | 20323198 | C_unshiu_00215:mRNA_34.1 | C_unshiu_00215 | 205164 | 208490 | Orange 2 | AGI-04 | 60.291 | ||||||||||
| Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | Ciclev10012056m | scaffold_6 | 21137783 | 21142157 | C_unshiu_00052:mRNA_27.2 | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
| Lp0206 | O | - | - | - | - | - | Ciclev10011764m | scaffold_6 | 20836509 | 20840107 | C_unshiu_00052:mRNA_56.1 | C_unshiu_00052 | 452105 | 455631 | Monodehydroascorbate reductase | AGI-04 | 58.655 | |||||||||||
| Cp0813 | - | - | - | - | - | - | SI047 | Ciclev10011980m | scaffold_6 | 20638049 | 20641557 | C_unshiu_00046:mRNA_46.1 | C_unshiu_00046 | 406041 | 409549 | Alpha/beta fold hydrolase | AGI-04 | 58.655 | ||||||||||
| Gn0009 | AAvailable marker | - | - | - | - | O | O | AGI-04 | 57.369 | KmG-04 | 27.843 | |||||||||||||||||
| Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | Ciclev10011842m | scaffold_6 | 21598429 | 21600967 | C_unshiu_00037:mRNA_7.2 | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
| Gmom19 | - | - | - | - | - | - | Ciclev10011554m | scaffold_6 | 21450811 | 21454133 | C_unshiu_00037:mRNA_27.1 | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
| Cp1361 | AAvailable marker | - | - | - | - | O | O | Ciclev10013042m | scaffold_6 | 21714716 | 21717652 | C_unshiu_01167:mRNA_14.1 | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
| Af1037 | - | - | - | - | - | - | Ciclev10032461m | scaffold_4 | 1969590 | 1972842 | C_unshiu_00058:mRNA_65.1 | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
| Cp0415 | - | - | - | - | - | - | Ciclev10011681m | scaffold_6 | 22213544 | 22219300 | C_unshiu_00074:mRNA_13.1 | C_unshiu_00074 | 81301 | 86950 | ATA15 protein | AGI-04 | 50.134 | |||||||||||
| Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | Ciclev10012265m | scaffold_6 | 22305922 | 22308021 | C_unshiu_00252:mRNA_6.1 | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
| Bf0008 | - | - | - | - | - | - | SI309 | Ciclev10012950m | scaffold_6 | 22467565 | 22470029 | C_unshiu_00038:mRNA_5.1 | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
| Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | Ciclev10013536m | scaffold_6 | 22616979 | 22619271 | C_unshiu_00038:mRNA_27.1 | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
| Af1059 | - | - | - | - | - | - | Ciclev10011827m | scaffold_6 | 23066384 | 23072168 | C_unshiu_00038:mRNA_98.1 | C_unshiu_00038 | 554982 | 560549 | Plastidic glucose transporter 4 | AGI-04 | 44.840 | |||||||||||
| Cp2026 | AAvailable marker | - | - | - | - | O | O | Ciclev10011534m | scaffold_6 | 23506491 | 23509585 | C_unshiu_00098:mRNA_44.1 | C_unshiu_00098 | 286004 | 289150 | Tryptophan synthase, beta subunit | AGI-04 | 43.239 | ||||||||||
| Cp0085 | O | - | - | - | - | - | Ciclev10012552m | scaffold_6 | 23364303 | 23366061 | C_unshiu_00098:mRNA_21.1 | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | AGI-04 | 42.183 | |||||||||||
| Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
| Tf0397 | - | - | - | - | - | - | SI008 | Ciclev10013334m | scaffold_6 | 23657256 | 23657810 | C_unshiu_00098:mRNA_65.1 | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
| Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | Ciclev10011780m | scaffold_6 | 24082263 | 24084635 | C_unshiu_00133:mRNA_13.1 | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
| Ov0513 | OOthers | O | - | - | - | - | - | Ciclev10011622m | scaffold_6 | 25349417 | 25351949 | C_unshiu_00009:mRNA_59.1 | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
| Vt0009 | - | - | - | - | - | - | Ciclev10012382m | scaffold_6 | 24932481 | 24935909 | C_unshiu_00135:mRNA_6.1 | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
| Tf0254 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10010885m | scaffold_6 | 23916876 | 23939827 | C_unshiu_00253:mRNA_3.1 | C_unshiu_00253 | 14647 | 20586 | Hypothetical protein | AGI-04 | 38.226 | ||||||||||
| Al0313 | AAvailable marker | O | - | - | - | O | O | Ciclev10011272m | scaffold_6 | 23966039 | 23969583 | C_unshiu_00133:mRNA_4.2 | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
| Af1462 | - | - | - | - | - | - | Ciclev10012884m | scaffold_6 | 24274031 | 24276658 | C_unshiu_00133:mRNA_50.1 | C_unshiu_00133 | 274230 | 284897 | Hypothetical protein | AGI-04 | 37.527 | |||||||||||
| Tf0364 | AAvailable marker | O | - | - | - | O | O | Ciclev10011266m | scaffold_6 | 24606501 | 24612654 | C_unshiu_00135:mRNA_49.1 | C_unshiu_00135 | 338118 | 344273 | FACT complex subunit SSRP1 | AGI-04 | 37.102 | ||||||||||
| Tf0050 | - | - | - | - | - | - | SI104,SI346 | Ciclev10012152m | scaffold_6 | 24874840 | 24876388 | C_unshiu_00135:mRNA_12.1 | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
| Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | Ciclev10001621m | scaffold_5 | 34294853 | 34297359 | C_unshiu_03047:mRNA_1.1 | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
| Af1443 | - | - | - | - | - | - | Ciclev10011413m | scaffold_6 | 25048398 | 25053494 | C_unshiu_00009:mRNA_3.1 | C_unshiu_00009 | 15765 | 28846 | Pentatricopeptide repeat-containing family protein | AGI-04 | 33.808 | |||||||||||
| Tf0286 | DDominant marker | O | - | - | - | - | - | Ciclev10011556m | scaffold_6 | 25001586 | 25004619 | C_unshiu_01279:mRNA_6.1 | C_unshiu_01279 | 43222 | 46082 | Dof zinc finger protein DOF5.2 | AGI-04 | 32.710 | ||||||||||
| Af1639 | - | - | - | - | - | - | Ciclev10012116m | scaffold_6 | 23462487 | 23466580 | C_unshiu_00098:mRNA_36.1 | C_unshiu_00098 | 239683 | 243712 | Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 | AGI-04 | 6.635 | |||||||||||
| Af1600 | - | - | - | - | - | - | Ciclev10013134m | scaffold_6 | 22758027 | 22760875 | C_unshiu_00038:mRNA_51.4 | C_unshiu_00038 | 305110 | 307864 | Negatively light-regulated protein | AGI-04 | 5.122 | |||||||||||
| Af1508 | - | - | - | - | - | - | Ciclev10011580m | scaffold_6 | 21983044 | 21991500 | C_unshiu_00079:mRNA_48.1 | C_unshiu_00079 | 328854 | 336213 | Stomatal closure-related actin-binding protein 3 | AGI-04 | 1.342 | |||||||||||
| Af1332 | - | - | - | - | - | - | Ciclev10013051m | scaffold_6 | 20834427 | 20836151 | C_unshiu_00052:mRNA_57.1 | C_unshiu_00052 | 455959 | 457684 | 60S acidic ribosomal protein | AGI-04 | ||||||||||||
| Wy0029 | - | - | - | - | - | - | Ciclev10012640m | scaffold_6 | 21145703 | 21148279 | C_unshiu_00052:mRNA_26.1 | C_unshiu_00052 | 161014 | 162179 | Type II peroxiredoxin | AGI-04 | ||||||||||||
| Gn0066.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10011230m | scaffold_6 | 19578179 | 19583475 | C_unshiu_00043:mRNA_12.1 | C_unshiu_00043 | 90212 | 94791 | Carotenoid isomerase | AGI-04 | |||||||||||
| Af1499 | - | - | - | - | - | - | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | AGI-04 | ||||||||||||
| Cp0336 | - | - | - | - | - | - | Ciclev10004655m | scaffold_9 | 31244440 | 31250356 | C_unshiu_00003:mRNA_113.1 | C_unshiu_00003 | 809668 | 815079 | ABC transporter D family member 2, chloroplastic | AGI-03 | 79.515 | |||||||||||
| Tf0022 | MDisagree by Marco analysis | O | - | - | - | - | - | SI116 | Ciclev10005681m | scaffold_9 | 31237089 | 31243866 | C_unshiu_00003:mRNA_112.1 | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 78.631 | |||||||||
| Bf0150 | - | - | - | - | - | - | SI316,SI370 | Ciclev10004834m | scaffold_9 | 31018836 | 31027361 | C_unshiu_00003:mRNA_85.1 | C_unshiu_00003 | 596288 | 610960 | Aldehyde dehydrogenase | AGI-03 | 77.920 | RP-03 | 77.748 | ||||||||
| Tf0292 | OOthers | O | - | - | - | - | - | Ciclev10006112m | scaffold_9 | 31139789 | 31143240 | C_unshiu_00003:mRNA_98.2 | C_unshiu_00003 | 698480 | 711976 | Protein strawberry notch | AGI-03 | 77.793 | ||||||||||
| Af1589 | - | - | - | - | - | - | Ciclev10005524m | scaffold_9 | 30995129 | 30999295 | C_unshiu_00003:mRNA_80.1 | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
| Fb0708 | - | - | - | - | - | - | Ciclev10005455m | scaffold_9 | 31237089 | 31243737 | C_unshiu_00003:mRNA_112.1 | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
| Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | Ciclev10004309m | scaffold_9 | 30513333 | 30517676 | C_unshiu_00003:mRNA_13.1 | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
| Tf0143 | - | - | - | - | - | - | SI127 | Ciclev10004758m | scaffold_9 | 30040457 | 30044615 | C_unshiu_00134:mRNA_22.1 | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
| Af1586 | - | - | - | - | - | - | Ciclev10005733m | scaffold_9 | 23119502 | 23122347 | C_unshiu_00148:mRNA_17.1 | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
| Af1513 | - | - | - | - | - | - | Ciclev10006024m | scaffold_9 | 29523786 | 29526379 | C_unshiu_00056:mRNA_24.1 | C_unshiu_00056 | 181282 | 183151 | 40S ribosomal protein S10 | AGI-03 | 63.545 | |||||||||||
| Al0001 | - | - | - | - | - | - | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-03 | 62.228 | JtR-031 | 17.616 | |||||||||||||
| Fb0329 | - | - | - | - | - | - | Ciclev10004180m | scaffold_9 | 29237838 | 29242883 | C_unshiu_00606:mRNA_2.1 | C_unshiu_00606 | 13693 | 18703 | Methyltransferase MT-A70 family protein isoform 1 | AGI-03 | 60.686 | |||||||||||
| Bf0004 | - | - | - | - | - | - | SI273 | Ciclev10005212m | scaffold_9 | 29563003 | 29568705 | C_unshiu_00056:mRNA_33.1 | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
| Bf1182.2 | - | - | - | - | - | - | No | AGI-03 | 56.391 | |||||||||||||||||||
| Af1700 | - | - | - | - | - | - | Ciclev10004322m | scaffold_9 | 18502293 | 18505531 | C_unshiu_00138:mRNA_34.1 | C_unshiu_00138 | 182719 | 186200 | Putative receptor protein kinase TMK1 | AGI-03 | 54.060 | |||||||||||
| Bf0171 | - | - | - | - | - | - | SI381 | Ciclev10006006m | scaffold_9 | 4116356 | 4117315 | C_unshiu_00101:mRNA_25.1 | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
| Ov0027 | Ov0027.em | - | - | - | - | - | - | Ciclev10009797m | scaffold_1 | 8417158 | 8419377 | C_unshiu_00584:mRNA_9.1 | C_unshiu_00584 | 74089 | 76266 | 60S ribosomal protein L28 | AGI-03 | 51.749 | ||||||||||
| Cp0185 | - | - | - | - | - | - | Ciclev10002024m | scaffold_5 | 34558362 | 34564638 | C_unshiu_00190:mRNA_33.1 | C_unshiu_00190 | 230947 | 237587 | Adenine phosphoribosyltransferase | AGI-03 | 51.129 | |||||||||||
| Af1414 | - | - | - | - | - | - | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | AGI-03 | 50.895 | |||||||||||
| Ov0013 | OOthers | - | - | - | - | - | - | Ciclev10005251m | scaffold_9 | 18058387 | 18060752 | C_unshiu_00556:mRNA_14.1 | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
| Tf0423 | - | - | - | - | - | - | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 50.361 | |||||||||||
| Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
| Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | Ciclev10004372m | scaffold_9 | 25073693 | 25080376 | C_unshiu_00119:mRNA_33.1 | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
| Bf0221 | - | - | - | - | - | - | Ciclev10005970m | scaffold_9 | 24195180 | 24198282 | C_unshiu_00132:mRNA_22.1 | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
| Bf0020 | - | - | - | - | - | - | Ciclev10005107m | scaffold_9 | 25185200 | 25188839 | C_unshiu_00119:mRNA_25.1 | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
| Cp0933 | OOthers | - | - | - | - | - | - | Ciclev10019734m | scaffold_3 | 49821906 | 49825730 | C_unshiu_00014:mRNA_26.1 | C_unshiu_00014 | 159299 | 162719 | Hypothetical protein | AGI-03 | 47.283 | ||||||||||
| Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_01048:mRNA_12.1 | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
| Al0011 | Al0010.2 | - | - | - | - | - | - | Ciclev10012654m | scaffold_6 | 10316999 | 10318328 | C_unshiu_00806:mRNA_1.2 | C_unshiu_00806 | 21305 | 22892 | Polyubiquitin | AGI-03 | 46.768 | ||||||||||
| Cp1034 | AtAvailable marker | - | - | - | - | O | O | Ciclev10005575m | scaffold_9 | 21107894 | 21109983 | C_unshiu_00160:mRNA_22.1 | C_unshiu_00160 | 182942 | 184946 | Putative calcium-binding protein CML48 | AGI-03 | 46.760 | ||||||||||
| Af1456 | - | - | - | - | - | - | Ciclev10006136m | scaffold_9 | 6354796 | 6356630 | C_unshiu_00146:mRNA_22.1 | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | AGI-03 | 46.298 | |||||||||||
| Bf0229 | - | - | - | - | - | - | SI253 | Ciclev10004848m | scaffold_9 | 17242218 | 17245901 | C_unshiu_00122:mRNA_16.1 | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
| Af1017 | O | - | - | - | - | - | Ciclev10006402m | scaffold_9 | 22671554 | 22672639 | No | AGI-03 | 46.274 | |||||||||||||||
| Tf0205 | OOthers | O | - | - | - | - | - | SI274 | Ciclev10005062m | scaffold_9 | 16383851 | 16393557 | C_unshiu_00094:mRNA_29.1 | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
| Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10022720m | scaffold_3 | 43447942 | 43449920 | C_unshiu_00411:mRNA_15.1 | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
| Gn0008 | OOthers | - | - | - | - | - | - | SI176 | Ciclev10005632m | scaffold_9 | 17789634 | 17793258 | C_unshiu_00098:mRNA_1.1 | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
| Cp1500 | - | - | - | - | - | - | Ciclev10004776m | scaffold_9 | 7080249 | 7086989 | C_unshiu_00161:mRNA_19.1 | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
| Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | Ciclev10004730m | scaffold_9 | 22728310 | 22730086 | C_unshiu_00295:mRNA_17.1 | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
| Tf0071 | - | - | - | - | - | - | SI084,SI146 | Ciclev10022102m | scaffold_3 | 26610747 | 26612959 | C_unshiu_00167:mRNA_6.1 | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
| Tf0117 | - | - | - | - | - | - | Ciclev10005596m | scaffold_9 | 15107375 | 15113804 | C_unshiu_00170:mRNA_11.1 | C_unshiu_00170 | 91205 | 97326 | Myb family transcription factor APL | AGI-03 | 46.274 | |||||||||||
| Fb0219 | - | - | - | - | - | - | Ciclev10031436m | scaffold_4 | 21153791 | 21158006 | C_unshiu_00010:mRNA_101.1 | C_unshiu_00010 | 718703 | 722812 | F-box only protein 6 | AGI-03 | 46.274 | |||||||||||
| Af1498 | - | - | - | - | - | - | Ciclev10006723m | scaffold_9 | 6766349 | 6768025 | C_unshiu_00307:mRNA_26.2 | C_unshiu_00307 | 212314 | 218407 | Heterogeneous nuclear ribonucleoprotein 1 | AGI-03 | 46.274 | |||||||||||
| Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | Ciclev10004620m | scaffold_9 | 7579900 | 7583093 | C_unshiu_00063:mRNA_61.1 | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
| Wy0032 | OOthers | O | - | - | - | O | O | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
| Af3822 | - | - | - | - | - | - | Ciclev10004695m | scaffold_9 | 5494254 | 5497030 | C_unshiu_00164:mRNA_13.1 | C_unshiu_00164 | 74059 | 75936 | Phosphate transporter | AGI-03 | 44.864 | |||||||||||
| Cp0018 | - | - | - | - | - | - | Ciclev10005068m | scaffold_9 | 5605470 | 5610840 | C_unshiu_00057:mRNA_49.1 | C_unshiu_00057 | 415460 | 428173 | Putative E3 ubiquitin-protein ligase HERC1 | AGI-03 | 44.848 | |||||||||||
| Wy0020 | - | - | - | - | - | - | SI007 | Ciclev10005394m | scaffold_9 | 5549195 | 5553148 | C_unshiu_00164:mRNA_5.1 | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
| Cp0106 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10020606m | scaffold_3 | 11867765 | 11869679 | C_unshiu_00741:mRNA_6.1 | C_unshiu_00741 | 44989 | 55203 | Wall associated kinase-like 6, putative | AGI-03 | 40.566 | ||||||||||
| Bf0130 | - | - | - | - | - | - | SI063,SI188 | Ciclev10004858m | scaffold_9 | 26981498 | 26984277 | C_unshiu_00095:mRNA_24.1 | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
| Ov0512 | OOthers | O | - | - | - | - | - | Ciclev10006241m | scaffold_9 | 27198508 | 27199642 | C_unshiu_00433:mRNA_19.1 | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
| Tf0074 | O | - | - | - | - | - | Ciclev10005366m | scaffold_9 | 28444512 | 28446074 | C_unshiu_00045:mRNA_7.1 | C_unshiu_00045 | 62608 | 63842 | TCP family transcription factor | AGI-03 | 37.816 | |||||||||||
| Tf0072 | - | - | - | - | - | - | Ciclev10005403m | scaffold_9 | 28757274 | 28759075 | C_unshiu_00045:mRNA_48.1 | C_unshiu_00045 | 372168 | 373811 | Heat stress transcription factor B-4 | AGI-03 | 35.962 | |||||||||||
| Af1638 | - | - | - | - | - | - | Ciclev10004755m | scaffold_9 | 28984972 | 28989373 | C_unshiu_00045:mRNA_79.1 | C_unshiu_00045 | 556440 | 562091 | Tubulin | AGI-03 | 34.554 | |||||||||||
| Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | Ciclev10004660m | scaffold_9 | 2732900 | 2738896 | C_unshiu_00040:mRNA_76.1 | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
| Cp1925 | AAvailable marker | - | - | - | - | O | O | Ciclev10005182m | scaffold_9 | 3115971 | 3120271 | C_unshiu_00051:mRNA_29.1 | C_unshiu_00051 | 224928 | 229203 | YjeF family domain-containing protein | AGI-03 | 24.457 | ||||||||||
| Lp0202 | O | - | - | - | - | - | Ciclev10006509m | scaffold_9 | 3131006 | 3134438 | C_unshiu_00051:mRNA_31.2 | C_unshiu_00051 | 239802 | 243699 | NEDD8-activating enzyme E1 catalytic subunit | AGI-03 | 23.085 | |||||||||||
| Cp1923 | OOthers | - | - | - | - | - | - | Ciclev10005293m | scaffold_9 | 2946301 | 2950297 | C_unshiu_00097:mRNA_22.1 | C_unshiu_00097 | 195825 | 199499 | UPF0613 protein PB24D3.06c | AGI-03 | 22.454 | ||||||||||
| Fb1227 | - | - | - | - | - | - | Ciclev10004375m | scaffold_9 | 3367718 | 3376062 | C_unshiu_00051:mRNA_60.1 | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
| Fb0827 | O | - | - | - | - | - | SI215,SI301 | Ciclev10004432m | scaffold_9 | 2353442 | 2357780 | C_unshiu_00394:mRNA_9.1 | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
| Cp1031 | AAvailable marker | - | O | - | - | O | O | Ciclev10005224m | scaffold_9 | 2324313 | 2328666 | C_unshiu_00394:mRNA_4.1 | C_unshiu_00394 | 11970 | 16480 | Putative E3 ubiquitin-protein ligase MARCH10 | AGI-03 | 18.610 | ||||||||||
| Af1177 | - | - | - | - | - | - | Ciclev10005989m | scaffold_9 | 2168387 | 2170546 | C_unshiu_00085:mRNA_13.1 | C_unshiu_00085 | 78341 | 80308 | CASP-like protein 1E1 | AGI-03 | 18.579 | |||||||||||
| Al0419 | OOthers | O | - | - | - | - | - | Ciclev10005894m | scaffold_9 | 2452853 | 2455181 | C_unshiu_00394:mRNA_25.1 | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
| Af1415 | - | - | - | - | - | - | Ciclev10005717m | scaffold_9 | 2603134 | 2605405 | C_unshiu_00366:mRNA_20.1 | C_unshiu_00366 | 130993 | 132913 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-03 | 16.667 | |||||||||||
| Lp0208 | - | - | - | - | - | - | Ciclev10018482m | scaffold_3 | 45704361 | 45713084 | C_unshiu_00326:mRNA_24.1 | C_unshiu_00326 | 146528 | 154002 | ABC transporter C family member 3 | AGI-03 | 15.136 | NAT-03 | 28.397 | |||||||||
| Mf0047 | DDominant marker | - | - | - | - | - | - | Ciclev10006308m | scaffold_9 | 1685407 | 1687081 | C_unshiu_00036:mRNA_24.2 | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
| Cp1523 | AAvailable marker | - | - | - | - | O | O | Ciclev10005519m | scaffold_9 | 1356758 | 1359310 | C_unshiu_01431:mRNA_7.1 | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
| Tf0275 | AAvailable marker | O | - | - | - | O | O | Ciclev10006256m | scaffold_9 | 955176 | 957425 | C_unshiu_00249:mRNA_31.1 | C_unshiu_00249 | 191274 | 194861 | Transposon protein, putative, Mutator sub-class | AGI-03 | 11.501 | ||||||||||
| Gmom26 | - | - | - | - | - | - | Ciclev10005911m | scaffold_9 | 713868 | 716708 | C_unshiu_00007:mRNA_76.1 | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
| Tf0140 | - | - | - | - | - | - | Ciclev10004457m | scaffold_9 | 225971 | 232459 | C_unshiu_00007:mRNA_144.1 | C_unshiu_00007 | 929895 | 935477 | Squamosa promoter-binding-like protein 1 | AGI-03 | 9.830 | |||||||||||
| Cp0996 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI340 | Ciclev10004474m | scaffold_9 | 543444 | 546746 | C_unshiu_00007:mRNA_105.1 | C_unshiu_00007 | 630727 | 633783 | Neutral/alkaline invertase | AGI-03 | 9.366 | |||||||||
| Bf0005 | - | - | - | - | - | - | SI194 | Ciclev10005100m | scaffold_9 | 465444 | 468143 | C_unshiu_00007:mRNA_115.1 | C_unshiu_00007 | 710354 | 712926 | Phosphatase 2C family protein | AGI-03 | 8.177 | ||||||||||
| Tf0106 | - | - | - | - | - | - | Ciclev10006161m | scaffold_9 | 1128046 | 1129318 | C_unshiu_00007:mRNA_6.1 | C_unshiu_00007 | 49599 | 50702 | GATA transcription factor 15 | AGI-03 | 7.674 | |||||||||||
| Fb1430 | Fb1430.lg | O | - | - | - | - | - | Ciclev10005994m | scaffold_9 | 1879675 | 1880523 | C_unshiu_00102:mRNA_3.1 | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
| Tf0221 | - | - | - | - | - | - | SI057,SI225 | Ciclev10025996m | scaffold_7 | 490750 | 492882 | C_unshiu_00488:mRNA_7.1 | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
| Ov0306 | OOthers | - | - | - | - | - | - | SI382 | Ciclev10026199m | scaffold_7 | 224443 | 227133 | No | AGI-02 | 79.663 | KmG-02 | 72.516 | JtR-02 | 8.671 | NAT-02S | 60.000 | |||||||
| Tf0026 | O | - | - | - | - | - | SI111,SI288 | Ciclev10025369m | scaffold_7 | 285299 | 292550 | C_unshiu_00312:mRNA_28.1 | C_unshiu_00312 | 151229 | 158232 | Ubiquilin | AGI-02 | 78.531 | ||||||||||
| Tf0032 | AAvailable marker | O | - | - | - | O | O | Ciclev10026014m | scaffold_7 | 94155 | 97631 | C_unshiu_00706:mRNA_8.1 | C_unshiu_00706 | 51525 | 54837 | AT-hook motif nuclear-localized protein 10 | AGI-02 | 78.531 | ||||||||||
| Wy0062 | Wy0062.em | - | - | - | - | - | - | Ciclev10011305m | scaffold_6 | 15214969 | 15222324 | C_unshiu_00034:mRNA_76.1 | C_unshiu_00034 | 634791 | 641934 | Peptidyl-prolyl cis-trans isomerase PASTICCINO1 | AGI-02 | 78.531 | ||||||||||
| Al0627 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10025602m | scaffold_7 | 128539 | 131642 | C_unshiu_00706:mRNA_3.1 | C_unshiu_00706 | 16590 | 18098 | Trigalactosyldiacylglycerol 1 isoform 1 | AGI-02 | 78.531 | ||||||||||
| Gn0101 | - | - | - | - | - | - | Ciclev10025706m | scaffold_7 | 662802 | 667420 | C_unshiu_00353:mRNA_30.1 | C_unshiu_00353 | 203269 | 207136 | Protein MID1-COMPLEMENTING ACTIVITY 1 | AGI-02 | 77.881 | |||||||||||
| Af1031 | O | - | - | - | - | - | Ciclev10025711m | scaffold_7 | 718488 | 722516 | C_unshiu_00353:mRNA_22.1 | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
| If0223 | AAvailable marker | - | - | - | - | O | O | No | AGI-02 | 76.168 | KmG-07 | 43.554 | JtR-02 | 13.208 | NAT-02S | 71.420 | ||||||||||||
| Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | Ciclev10026412m | scaffold_7 | 815904 | 817239 | C_unshiu_00353:mRNA_13.1 | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
| Wy0041 | - | - | - | - | - | - | Ciclev10025903m | scaffold_7 | 1295839 | 1297378 | C_unshiu_00218:mRNA_18.1 | C_unshiu_00218 | 93074 | 94183 | GDP-mannose 4,6 dehydratase 2 | AGI-02 | 75.406 | |||||||||||
| Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
| Fb0995 | OOthers | O | - | - | - | - | - | SI026 | Ciclev10024677m | scaffold_7 | 1180019 | 1202408 | C_unshiu_00544:mRNA_10.1 | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
| Af2893 | - | - | - | - | - | - | Ciclev10025356m | scaffold_7 | 1739443 | 1743149 | C_unshiu_01334:mRNA_6.1 | C_unshiu_01334 | 25863 | 29359 | Putative mitochondrial chaperone BCS1-B | AGI-02 | 73.779 | |||||||||||
| Cp1697 | AAvailable marker | - | - | - | - | O | O | Ciclev10028645m | scaffold_8 | 966124 | 968846 | C_unshiu_00041:mRNA_89.1 | C_unshiu_00041 | 555334 | 558046 | Urease accessory protein UreH | AGI-02 | 73.770 | ||||||||||
| Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00008:mRNA_8.1 | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
| Af1619 | - | - | - | - | - | - | Ciclev10026784m | scaffold_7 | 1608634 | 1610659 | C_unshiu_00209:mRNA_18.2 | C_unshiu_00209 | 147009 | 148975 | Thioredoxin h | AGI-02 | 73.759 | |||||||||||
| If0010 | AAvailable marker | O | - | - | - | O | - | Ciclev10026308m | scaffold_7 | 1264965 | 1266960 | C_unshiu_00218:mRNA_11.1 | C_unshiu_00218 | 63403 | 65018 | 60S ribosomal protein L8 | AGI-02 | 73.759 | KmG-02 | 76.687 | JtR-02 | 10.849 | NAT-02S | 71.041 | ||||
| If0210 | - | - | - | - | - | - | SI042 | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
| Tf0020 | - | - | - | - | - | - | SI154 | Ciclev10026414m | scaffold_7 | 2289455 | 2291216 | C_unshiu_00025:mRNA_31.1 | C_unshiu_00025 | 258446 | 260200 | Homeobox leucine zipper protein | AGI-02 | 71.294 | ||||||||||
| Tf0357 | - | - | - | - | - | - | SI018 | Ciclev10025390m | scaffold_7 | 2246732 | 2249558 | C_unshiu_01055:mRNA_7.1 | C_unshiu_01055 | 60614 | 63050 | Zinc finger protein JACKDAW | AGI-02 | 71.294 | ||||||||||
| Cp1085 | - | - | - | - | - | - | Ciclev10025935m | scaffold_7 | 2390010 | 2391658 | C_unshiu_00025:mRNA_42.1 | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
| Vt0015 | - | - | - | - | - | - | Ciclev10025952m | scaffold_7 | 2441452 | 2443391 | C_unshiu_00025:mRNA_49.1 | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
| Cp2263 | AAvailable marker | - | - | - | - | O | O | Ciclev10026034m | scaffold_7 | 2586384 | 2588513 | C_unshiu_00025:mRNA_69.1 | C_unshiu_00025 | 530588 | 532071 | Hypothetical protein | AGI-02 | 70.082 | ||||||||||
| Bf0128 | O | - | - | - | - | - | Ciclev10025298m | scaffold_7 | 3323269 | 3331038 | C_unshiu_00051:mRNA_2.2 | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
| Fb0227 | - | - | - | - | - | - | Ciclev10026002m | scaffold_7 | 2938059 | 2940407 | C_unshiu_00084:mRNA_42.1 | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
| Cp1716 | AAvailable marker | - | - | - | - | O | O | Ciclev10026303m | scaffold_7 | 2607670 | 2609433 | C_unshiu_00025:mRNA_77.1 | C_unshiu_00025 | 553145 | 554831 | Thiol disulfide interchange protein | AGI-02 | 70.068 | ||||||||||
| Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | Ciclev10024695m | scaffold_7 | 2501520 | 2509737 | C_unshiu_02417:mRNA_1.1 | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
| Af1379 | - | - | - | - | - | - | Ciclev10026357m | scaffold_7 | 3456105 | 3460607 | C_unshiu_00301:mRNA_21.2 | C_unshiu_00301 | 134429 | 138770 | CBS domain-containing protein CBSX1, chloroplastic | AGI-02 | 68.467 | |||||||||||
| Gn0068 | - | - | - | - | - | - | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | AGI-02 | 68.446 | RP-02.2 | 9.814 | |||||||||
| Tf0259 | AAvailable marker | O | - | - | - | O | O | Ciclev10026107m | scaffold_7 | 3674156 | 3676384 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-02 | 67.666 | ||||||||||
| Mf0094 | AAvailable marker | - | - | - | - | O | O | Ciclev10026594m | scaffold_7 | 3721375 | 3722616 | C_unshiu_00169:mRNA_29.1 | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
| Lp0126 | AAvailable marker | O | - | - | - | O | O | Ciclev10025164m | scaffold_7 | 3946818 | 3949964 | C_unshiu_00801:mRNA_10.1 | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
| Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10025875m | scaffold_7 | 4575503 | 4577125 | C_unshiu_00656:mRNA_8.1 | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
| Al0409 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI201,SI252 | Ciclev10024949m | scaffold_7 | 5042508 | 5046271 | No | AGI-02 | 50.758 | KmG-02 | 44.930 | JtR-02 | 29.462 | NAT-02S | 90.742 | |||||||
| Cp1736 | - | - | - | - | - | - | Ciclev10026179m | scaffold_7 | 5640058 | 5643125 | C_unshiu_00761:mRNA_15.2 | C_unshiu_00761 | 89991 | 92755 | Protein CbbY | AGI-02 | 50.716 | |||||||||||
| Gn0004 | - | - | - | - | - | - | Ciclev10026028m | scaffold_7 | 6011523 | 6014015 | C_unshiu_00696:mRNA_14.1 | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
| Fb0233 | O | - | - | - | - | - | SI025,SI079,SI169 | Ciclev10025557m | scaffold_7 | 6535522 | 6540965 | C_unshiu_00437:mRNA_15.1 | C_unshiu_00437 | 131524 | 136642 | WD-40 repeat-containing protein MSI4 | AGI-02 | 47.382 | ||||||||||
| Tf0319 | - | - | - | - | - | - | SI152 | Ciclev10026319m | scaffold_7 | 6872666 | 6877291 | C_unshiu_00166:mRNA_10.1 | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
| Af1043 | - | - | - | - | - | - | Ciclev10026060m | scaffold_7 | 20049936 | 20052008 | C_unshiu_00519:mRNA_19.1 | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
| Fb0133 | - | - | - | - | - | - | C_unshiu_00195:mRNA_19.1 | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
| Ov0015 | OOthers | O | - | - | - | - | - | SI304 | Ciclev10026223m | scaffold_7 | 8255046 | 8256442 | C_unshiu_02827:mRNA_2.1 | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
| Fb0365 | O | - | - | - | - | - | SI036,SI320 | Ciclev10026391m | scaffold_7 | 20872462 | 20874659 | C_unshiu_00098:mRNA_41.1 | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
| Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10025343m | scaffold_7 | 19024295 | 19026021 | C_unshiu_00468:mRNA_22.1 | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
| Mf0090 | AAvailable marker | - | O | - | - | O | O | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
| Vt0032 | O | - | - | - | - | - | SI024 | Ciclev10024737m | scaffold_7 | 17901487 | 17905433 | C_unshiu_00382:mRNA_15.1 | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
| Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
| Af1003 | O | - | - | - | - | - | Ciclev10001093m | scaffold_5 | 15605852 | 15610028 | C_unshiu_00533:mRNA_20.1 | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
| Gmom29 | - | - | - | - | - | - | Ciclev10000654m | scaffold_5 | 12677414 | 12680761 | C_unshiu_00578:mRNA_7.1 | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
| Cp2232 | AAvailable marker | - | - | - | - | O | O | Ciclev10002687m | scaffold_5 | 17809523 | 17810742 | C_unshiu_01815:mRNA_5.1 | C_unshiu_01815 | 28593 | 29777 | Photosystem I reaction center subunit N | AGI-02 | 22.436 | ||||||||||
| Tf0147 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | AGI-02 | 22.436 | |||||||||||
| Af1207 | - | - | - | - | - | - | Ciclev10025335m | scaffold_7 | 15605065 | 15607345 | C_unshiu_00628:mRNA_20.1 | C_unshiu_00628 | 144683 | 146646 | Flavonoid 3'-monooxygenase | AGI-02 | 21.344 | |||||||||||
| Cp0114 | - | - | - | - | - | - | Ciclev10027515m | scaffold_7 | 15446269 | 15449214 | C_unshiu_01960:mRNA_1.1 | C_unshiu_01960 | 1400 | 4642 | DS12 from 2D-PAGE of leaf protein, putative | AGI-02 | 21.337 | |||||||||||
| Af3023 | - | - | - | - | - | - | Ciclev10026364m | scaffold_7 | 16185818 | 16187223 | C_unshiu_00371:mRNA_7.1 | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | AGI-02 | 21.337 | |||||||||||
| Tf0125 | - | - | - | - | - | - | Ciclev10025501m | scaffold_7 | 16249523 | 16255343 | C_unshiu_01042:mRNA_11.1 | C_unshiu_01042 | 86577 | 91963 | Ubiquitin-specific protease family C19 protein | AGI-02 | 21.337 | |||||||||||
| Tf0454 | AAvailable marker | O | - | - | - | O | O | Ciclev10027306m | scaffold_7 | 16108723 | 16113463 | C_unshiu_00371:mRNA_10.1 | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
| Lp0004 | OOthers | - | - | - | - | - | - | Ciclev10026144m | scaffold_7 | 15376818 | 15378771 | C_unshiu_00703:mRNA_1.1 | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
| Gmom24 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
| Al0037 | - | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | |||||||||||
| Al0037.2 | Al0037.k | O | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | ||||||||||
| Wy0060 | Wy0060.em | - | - | - | - | - | - | Ciclev10020776m | scaffold_3 | 46998745 | 47002683 | C_unshiu_00023:mRNA_2.1 | C_unshiu_00023 | 7129 | 11067 | Pto kinase interactor 1 | AGI-02 | 14.597 | ||||||||||
| Cp0100 | O | - | - | - | - | - | Ciclev10024866m | scaffold_7 | 10471136 | 10474241 | C_unshiu_00924:mRNA_4.1 | C_unshiu_00924 | 50269 | 52902 | Tetratricopeptide repeat-like superfamily protein | AGI-02 | 14.111 | |||||||||||
| Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | Ciclev10015338m | scaffold_2 | 290799 | 294122 | C_unshiu_00109:mRNA_36.1 | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
| Af1100 | - | - | - | - | - | - | Ciclev10026703m | scaffold_7 | 10853487 | 10855215 | C_unshiu_00451:mRNA_17.1 | C_unshiu_00451 | 120744 | 122474 | Ran BP2/NZF zinc finger-like superfamily protein isoform 1 | AGI-02 | 13.326 | |||||||||||
| Cp1791 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10027428m | scaffold_7 | 11604464 | 11607028 | C_unshiu_00582:mRNA_4.1 | C_unshiu_00582 | 10067 | 11470 | NBS-LRR type disease resistance protein | AGI-02 | 12.969 | ||||||||||
| Vt0030 | Vt0030.k | O | - | - | - | - | - | Ciclev10024917m | scaffold_7 | 11271705 | 11277014 | C_unshiu_01240:mRNA_4.1 | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
| Em0004 | Fb1532.em | - | - | - | - | - | - | Ciclev10015815m | scaffold_2 | 11585699 | 11587422 | C_unshiu_01211:mRNA_9.1 | C_unshiu_01211 | 67756 | 69149 | Transparent testa glabra 1 | AGI-02 | 11.835 | ||||||||||
| Af1556 | - | - | - | - | - | - | Ciclev10026643m | scaffold_7 | 11107041 | 11109191 | C_unshiu_01501:mRNA_6.1 | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
| Tf0172 | O | - | - | - | - | - | Ciclev10026400m | scaffold_7 | 9976621 | 9980176 | C_unshiu_00496:mRNA_5.1 | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
| Cp1852 | - | - | - | - | - | - | Ciclev10010530m | scaffold_1 | 22711668 | 22715696 | C_unshiu_00103:mRNA_19.2 | C_unshiu_00103 | 116559 | 121057 | Cell differentiation protein rcd1 | AGI-02 | 9.592 | |||||||||||
| Tf0067 | OOthers | O | - | - | - | - | - | SI033,SI187 | Ciclev10025950m | scaffold_7 | 8438702 | 8442381 | C_unshiu_00290:mRNA_9.1 | C_unshiu_00290 | 74194 | 77624 | Transcription factor | AGI-02 | 5.104 | |||||||||
| Bf0142 | O | - | - | - | - | - | Ciclev10024891m | scaffold_7 | 8508837 | 8516759 | C_unshiu_00290:mRNA_16.1 | C_unshiu_00290 | 151884 | 158772 | Class III homeodomain leucine zipper protein | AGI-02 | 5.104 | |||||||||||
| Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10024860m | scaffold_7 | 8603450 | 8610239 | C_unshiu_00290:mRNA_28.1 | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
| Tf0196 | - | - | - | - | - | - | Ciclev10025815m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
| Af0004 | O | - | - | - | - | - | Ciclev10025125m | scaffold_7 | 8447414 | 8453714 | C_unshiu_00290:mRNA_10.1 | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
| Gn0097 | - | - | - | - | - | - | Ciclev10005133m | scaffold_9 | 10246239 | 10248409 | C_unshiu_00372:mRNA_8.1 | C_unshiu_00372 | 77039 | 79209 | Naringenin-chalcone synthase | AGI-02 | ||||||||||||
| Wy0055 | Wy0055.em | - | - | - | - | - | - | C_unshiu_00005:mRNA_81.1 | C_unshiu_00005 | 686926 | 696896 | Neurochondrin | AGI-01 | 118.691 | ||||||||||||||
| Cp0672 | - | - | - | - | - | - | Ciclev10007769m | scaffold_1 | 28262202 | 28267878 | C_unshiu_00005:mRNA_26.1 | C_unshiu_00005 | 170218 | 174432 | Putative eukaryotic translation initiation factor 4 gamma | AGI-01 | 101.472 | |||||||||||
| Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | Ciclev10008225m | scaffold_1 | 1070373 | 1072218 | C_unshiu_00005:mRNA_43.1 | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
| Cp0741 | AAvailable marker | O | - | - | - | O | O | Ciclev10008230m | scaffold_1 | 3746864 | 3749903 | C_unshiu_00055:mRNA_22.1 | C_unshiu_00055 | 168281 | 172005 | Ferrochelatase | AGI-01 | 75.964 | ||||||||||
| Al0639 | AAvailable marker | O | - | - | - | O | O | Ciclev10001091m | scaffold_5 | 41703787 | 41708779 | C_unshiu_00009:mRNA_141.1 | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
| Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | Ciclev10008900m | scaffold_1 | 4722889 | 4726339 | C_unshiu_00547:mRNA_9.1 | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
| Mf0033 | AAvailable marker | - | - | - | - | O | O | Ciclev10010044m | scaffold_1 | 6227617 | 6228389 | C_unshiu_00075:mRNA_11.1 | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
| Lp0219 | - | - | - | - | - | - | Ciclev10032329m | scaffold_4 | 6128952 | 6131314 | C_unshiu_01202:mRNA_8.1 | C_unshiu_01202 | 57691 | 60017 | Acyl-CoA N-acyltransferases superfamily protein isoform 1 | AGI-01 | 61.636 | NAT-01S | 60.000 | |||||||||
| Fb0478 | - | - | - | - | - | - | Ciclev10008010m | scaffold_1 | 14592248 | 14596429 | C_unshiu_00071:mRNA_18.1 | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
| Al0513 | OOthers | - | - | - | - | - | - | Ciclev10009222m | scaffold_1 | 8046181 | 8049306 | C_unshiu_00191:mRNA_21.1 | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
| Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | Ciclev10008537m | scaffold_1 | 18068297 | 18070262 | C_unshiu_00187:mRNA_17.1 | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
| Tf0066 | - | - | - | - | - | - | SI221 | Ciclev10008812m | scaffold_1 | 18270818 | 18273015 | C_unshiu_00187:mRNA_34.1 | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
| Bf1192 | - | - | - | - | - | - | Ciclev10008160m | scaffold_1 | 10678653 | 10684627 | C_unshiu_00242:mRNA_11.1 | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
| Wy0008 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10009193m | scaffold_1 | 9297360 | 9299641 | No | AGI-01 | 57.863 | KmG-01 | 43.003 | JtR-01S | 99.300 | ||||||||||
| Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | Ciclev10008410m | scaffold_1 | 10946316 | 10949617 | C_unshiu_00201:mRNA_19.1 | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
| Al0619 | - | - | - | - | - | - | Ciclev10005142m | scaffold_9 | 2234066 | 2238313 | C_unshiu_00311:mRNA_12.1 | C_unshiu_00311 | 55933 | 60057 | TLP domain class transcription factor | AGI-01 | 57.863 | KmG-01 | 39.698 | |||||||||
| Af1370 | - | - | - | - | - | - | Ciclev10009015m | scaffold_1 | 8822834 | 8826308 | C_unshiu_00579:mRNA_6.1 | C_unshiu_00579 | 46507 | 50108 | Plasma membrane | AGI-01 | 56.590 | |||||||||||
| Tf0059 | - | - | - | - | - | - | SI101 | Ciclev10007297m | scaffold_1 | 12883722 | 12897805 | C_unshiu_00450:mRNA_3.1 | C_unshiu_00450 | 36956 | 58462 | AGC family Serine/Threonine kinase family protein | AGI-01 | 56.416 | ||||||||||
| Fb0275 | O | - | - | - | - | - | Ciclev10008562m | scaffold_1 | 15883118 | 15887517 | C_unshiu_00288:mRNA_9.1 | C_unshiu_00288 | 55910 | 60461 | Malate dehydrogenase | AGI-01 | 55.687 | |||||||||||
| Af1622 | - | - | - | - | - | - | Ciclev10008520m | scaffold_1 | 18117264 | 18119451 | C_unshiu_00187:mRNA_23.3 | C_unshiu_00187 | 141733 | 143877 | Protochlorophyllide reductase, chloroplastic | AGI-01 | 54.754 | |||||||||||
| Bf0182 | O | - | - | - | - | - | Ciclev10009454m | scaffold_1 | 17831333 | 17834889 | C_unshiu_00429:mRNA_12.1 | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
| Tf0058 | - | - | - | - | - | - | SI257 | Ciclev10009065m | scaffold_1 | 20885102 | 20889283 | C_unshiu_00395:mRNA_8.2 | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
| Af1424 | - | - | - | - | - | - | Ciclev10008953m | scaffold_1 | 18688873 | 18690138 | C_unshiu_00137:mRNA_44.1 | C_unshiu_00137 | 354434 | 355481 | CFE protein | AGI-01 | 43.613 | |||||||||||
| Bf0026 | - | - | - | - | - | - | Ciclev10008765m | scaffold_1 | 21082902 | 21086082 | C_unshiu_00487:mRNA_12.1 | C_unshiu_00487 | 113166 | 115416 | Thiazole biosynthetic enzyme | AGI-01 | 43.164 | RP-01 | 56.137 | |||||||||
| Al0525 | OOthers | O | - | - | - | - | - | Ciclev10026706m | scaffold_7 | 252320 | 254023 | C_unshiu_00312:mRNA_20.2 | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
| Al0215 | OOthers | - | - | - | - | - | - | Ciclev10007304m | scaffold_1 | 21918726 | 21922966 | C_unshiu_00595:mRNA_18.1 | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
| Al0029 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00305:mRNA_10.1 | C_unshiu_00305 | 69938 | 73026 | Basic helix-loop-helix transcription factor | AGI-01 | 37.357 | JtR-01S | 50.000 | ||||||||||||
| Cp0671 | AAvailable marker | - | - | - | - | O | O | Ciclev10009489m | scaffold_1 | 28353948 | 28356507 | C_unshiu_00590:mRNA_26.1 | C_unshiu_00590 | 165626 | 168046 | UPF0133 protein | AGI-01 | 36.113 | ||||||||||
| Wy0026 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10010857m | scaffold_1 | 28321342 | 28323314 | C_unshiu_02224:mRNA_5.1 | C_unshiu_02224 | 30176 | 31684 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AGI-01 | 35.518 | ||||||||||
| Tf0077 | O | - | - | - | - | - | SI135 | Ciclev10008135m | scaffold_1 | 28433972 | 28437921 | C_unshiu_00590:mRNA_15.1 | C_unshiu_00590 | 86430 | 90131 | WRKY | AGI-01 | 34.814 | ||||||||||
| Tf0124 | - | - | - | - | - | - | Ciclev10007717m | scaffold_1 | 27457358 | 27462893 | C_unshiu_00237:mRNA_37.1 | C_unshiu_00237 | 259818 | 273281 | Dethiobiotin synthase | AGI-01 | 34.062 | |||||||||||
| Cp0748 | - | - | - | - | - | - | Ciclev10022288m | scaffold_3 | 34673451 | 34674900 | C_unshiu_00669:mRNA_14.1 | C_unshiu_00669 | 103814 | 104779 | Light-dependent short hypocotyls protein | AGI-01 | 33.562 | |||||||||||
| Wy0063 | Wy0063.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | AGI-01 | 33.445 | ||||||||||
| Bf0033 | - | - | - | - | - | - | SI356,SI379 | Ciclev10007537m | scaffold_1 | 27204998 | 27211059 | C_unshiu_00347:mRNA_22.1 | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
| Al0407 | AAvailable marker | O | - | - | - | O | O | Ciclev10009315m | scaffold_1 | 26576059 | 26578193 | C_unshiu_00131:mRNA_17.1 | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
| Tf0163 | AAvailable marker | O | - | - | - | O | O | Ciclev10010423m | scaffold_1 | 26740822 | 26744016 | C_unshiu_00105:mRNA_35.1 | C_unshiu_00105 | 316978 | 320206 | RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 | AGI-01 | 31.240 | ||||||||||
| Fb0103 | OOthers | O | - | - | - | - | - | SI155 | Ciclev10008255m | scaffold_1 | 22758712 | 22761740 | C_unshiu_00103:mRNA_27.1 | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
| Gn0017 | - | - | - | - | - | - | Ciclev10007311m | scaffold_1 | 25880824 | 25887976 | C_unshiu_00005:mRNA_103.1 | C_unshiu_00005 | 841899 | 847089 | Sucrose phosphate synthase | AGI-01 | 30.293 | KmG-01 | 17.862 | |||||||||
| Lp0211 | O | - | - | - | - | - | Ciclev10009567m | scaffold_1 | 25816949 | 25818472 | C_unshiu_00066:mRNA_48.1 | C_unshiu_00066 | 279404 | 280861 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 | AGI-01 | 30.175 | RP-01 | 24.533 | |||||||||
| Af1094 | - | - | - | - | - | - | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | AGI-01 | 30.175 | |||||||||||
| Lp0237 | Lp0237.k | - | - | - | - | - | - | Ciclev10007524m | scaffold_1 | 25987803 | 25992258 | C_unshiu_00066:mRNA_23.1 | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
| Af1467 | - | - | - | - | - | - | Ciclev10008651m | scaffold_1 | 24171632 | 24175378 | C_unshiu_00047:mRNA_19.1 | C_unshiu_00047 | 116658 | 120038 | Putative amino acid permease 7 | AGI-01 | 29.784 | |||||||||||
| Bf0036 | AAvailable marker | O | O | - | O | O | O | Ciclev10008751m | scaffold_1 | 22840947 | 22844111 | C_unshiu_00103:mRNA_45.1 | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
| Af1554 | - | - | - | - | - | - | Ciclev10009386m | scaffold_1 | 23753759 | 23756754 | C_unshiu_00080:mRNA_59.1 | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
| Tf0406 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | AGI-01 | 28.515 | ||||||||||
| Fb0237 | - | - | - | - | - | - | Ciclev10007227m | scaffold_1 | 23487200 | 23497316 | C_unshiu_00338:mRNA_20.1 | C_unshiu_00338 | 134033 | 144369 | Hypothetical protein | AGI-01 | 28.325 | |||||||||||
| Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | Ciclev10007493m | scaffold_1 | 23776796 | 23782088 | C_unshiu_00080:mRNA_56.1 | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
| Ks9001 | - | - | - | - | - | - | Ciclev10008207m | scaffold_1 | 24548109 | 24552107 | C_unshiu_00047:mRNA_72.1 | C_unshiu_00047 | 475125 | 488565 | Inter-alpha-trypsin inhibitor heavy chain-related isoform 1 | AGI-01 | 27.192 | JtR-01S | 61.287 | |||||||||
| Tf0049 | - | - | - | - | - | - | SI328 | Ciclev10008919m | scaffold_1 | 24273993 | 24277800 | C_unshiu_00047:mRNA_33.1 | C_unshiu_00047 | 212549 | 221653 | WD domain protein-like | AGI-01 | 26.841 | ||||||||||
| Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | Ciclev10009756m | scaffold_1 | 25592494 | 25593617 | C_unshiu_00066:mRNA_75.1 | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
| Fb0143 | - | - | - | - | - | - | SI361 | Ciclev10007397m | scaffold_1 | 25283807 | 25291472 | C_unshiu_00150:mRNA_43.1 | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
| Wy0028 | AAvailable marker | - | - | - | - | O | O | Ciclev10007806m | scaffold_1 | 25001341 | 25004726 | C_unshiu_00150:mRNA_3.1 | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
| Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | Ciclev10007563m | scaffold_1 | 24898769 | 24905716 | C_unshiu_00341:mRNA_22.1 | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
| Af1568 | - | - | - | - | - | - | C_unshiu_00591:mRNA_15.1 | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
| Af1084 | - | - | - | - | - | - | Ciclev10008467m | scaffold_1 | 25716862 | 25720071 | C_unshiu_00066:mRNA_57.1 | C_unshiu_00066 | 369928 | 382143 | Hypothetical protein | AGI-01 | 24.643 | |||||||||||
| Cp2158 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10007944m | scaffold_1 | 22847397 | 22852110 | C_unshiu_00103:mRNA_47.1 | C_unshiu_00103 | 254015 | 258614 | Trigger factor type chaperone family protein | AGI-01 | 24.422 | ||||||||||
| Tf0307 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10009286m | scaffold_1 | 25395688 | 25397278 | C_unshiu_00442:mRNA_24.1 | C_unshiu_00442 | 209015 | 209831 | Myb domain protein 5 | AGI-01 | 23.266 | ||||||||||
| Tf0449 | OOthers | O | - | - | - | - | - | Ciclev10009165m | scaffold_1 | 28254307 | 28257305 | C_unshiu_01997:mRNA_4.1 | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
| Bf1207 | - | - | - | - | - | - | Ciclev10010835m | scaffold_1 | 22912695 | 22913798 | C_unshiu_00103:mRNA_59.1 | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
| Bf0013 | O | - | - | - | - | - | Ciclev10008507m | scaffold_1 | 23111733 | 23116067 | No | AGI-01 | RP-01 | 47.360 | ||||||||||||||
| Af1255 | - | - | - | - | - | - | Ciclev10006003m | scaffold_9 | 28061221 | 28063450 | ||||||||||||||||||
| Af1520 | - | - | - | - | - | - | Ciclev10015124m | scaffold_2 | 7360380 | 7367946 | ||||||||||||||||||
| Bf0180 | - | - | - | - | - | - | Ciclev10028147m | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
| Cp1050 | - | - | - | - | - | - | Ciclev10032471m | scaffold_4 | 1537835 | 1540818 | ||||||||||||||||||
| Fb0346 | - | - | - | - | - | - | Ciclev10021000m | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
| Ov0129 | Ov0129.k | - | - | - | - | - | - | Ciclev10030928m | scaffold_4 | 2717014 | 2719856 | |||||||||||||||||
| Tf0442 | - | - | - | - | - | - | Ciclev10029160m | scaffold_8 | 23158292 | 23161424 | ||||||||||||||||||
| Af0001 | - | - | - | - | - | - | Ciclev10033102m | scaffold_4 | 25190682 | 25192326 | ||||||||||||||||||
| Af1256 | - | - | - | - | - | - | Ciclev10008233m | scaffold_1 | 940514 | 942972 | ||||||||||||||||||
| Af1521 | - | - | - | - | - | - | Ciclev10004680m | scaffold_9 | 9799746 | 9804461 | ||||||||||||||||||
| Al0216 | - | - | - | - | - | - | Ciclev10007632m | scaffold_1 | 7359982 | 7369305 | ||||||||||||||||||
| Cp1056 | - | - | - | - | - | - | Ciclev10012459m | scaffold_6 | 20024370 | 20027538 | ||||||||||||||||||
| Lp0025 | - | - | - | - | - | - | Ciclev10009567m | scaffold_1 | 25816949 | 25818472 | ||||||||||||||||||
| Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
| Tf0443 | - | - | - | - | - | - | Ciclev10012193m | scaffold_6 | 5886744 | 5892919 | ||||||||||||||||||
| Af0002 | - | - | - | - | - | - | Ciclev10026803m | scaffold_7 | 9468245 | 9468907 | ||||||||||||||||||
| Af1257 | - | - | - | - | - | - | Ciclev10033061m | scaffold_4 | 25059045 | 25061910 | ||||||||||||||||||
| Af1522 | - | - | - | - | - | - | Ciclev10026433m | scaffold_7 | 1507804 | 1510299 | ||||||||||||||||||
| Al0217 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI350 | Ciclev10022061m | scaffold_3 | 1203357 | 1206483 | No | KmG-05S | JtR-05 | 25.182 | ||||||||||||
| Bf0183 | O | - | - | - | - | - | SI308 | Ciclev10005208m | scaffold_9 | 5254416 | 5256826 | C_unshiu_01106:mRNA_9.1 | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
| Cp1067 | - | - | - | - | - | - | Ciclev10014572m | scaffold_2 | 188504 | 192741 | ||||||||||||||||||
| Lp0026 | - | - | - | - | - | - | Ciclev10030880m | scaffold_4 | 3323209 | 3331825 | ||||||||||||||||||
| Ov0302 | Ov0301.2 | - | - | - | - | - | - | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
| Tf0444 | - | - | - | - | - | - | Ciclev10029022m | scaffold_8 | 10574673 | 10578797 | ||||||||||||||||||
| Af0003 | - | - | - | - | - | - | Ciclev10017107m | scaffold_2 | 11373565 | 11374539 | ||||||||||||||||||
| Af1258 | - | - | - | - | - | - | Ciclev10029223m | scaffold_8 | 24591409 | 24594117 | ||||||||||||||||||
| Af1523 | - | - | - | - | - | - | Ciclev10031240m | scaffold_4 | 6231492 | 6235447 | ||||||||||||||||||
| Al0218.2 | - | - | - | - | - | - | Ciclev10022061m | scaffold_3 | 1203357 | 1206483 | ||||||||||||||||||
| Cp1081 | - | - | - | - | - | - | Ciclev10024992m | scaffold_7 | 7826603 | 7829404 | ||||||||||||||||||
| Lp0027 | - | - | - | - | - | - | Ciclev10032174m | scaffold_4 | 14967254 | 14971449 | ||||||||||||||||||
| Ov0303 | - | - | - | - | - | - | Ciclev10011600m | scaffold_6 | 25160851 | 25164999 | ||||||||||||||||||
| Tf0169 | - | - | - | - | - | - | Ciclev10004115m | scaffold_9 | 2284484 | 2302268 | ||||||||||||||||||
| Tf0445 | - | - | - | - | - | - | Ciclev10029260m | scaffold_8 | 6065092 | 6068908 | ||||||||||||||||||
| Af1259 | - | - | - | - | - | - | Ciclev10030701m | scaffold_4 | 15528851 | 15538252 | ||||||||||||||||||
| Af1524 | - | - | - | - | - | - | Ciclev10025757m | scaffold_7 | 9325319 | 9327565 | ||||||||||||||||||
| Al0219 | - | - | - | - | - | - | Ciclev10028236m | scaffold_8 | 793820 | 798369 | ||||||||||||||||||
| Bf0189 | - | - | - | - | - | - | C_unshiu_00008:mRNA_66.1 | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
| Lp0028 | - | - | - | - | - | - | Ciclev10014842m | scaffold_2 | 22362548 | 22366644 | ||||||||||||||||||
| Ov0304 | - | - | - | - | - | - | Ciclev10000702m | scaffold_5 | 6482366 | 6484923 | ||||||||||||||||||
| Tf0170 | - | - | - | - | - | - | Ciclev10005681m | scaffold_9 | 31237089 | 31243866 | ||||||||||||||||||
| Tf0446 | - | - | - | - | - | - | Ciclev10020000m | scaffold_3 | 42990251 | 42995979 | ||||||||||||||||||
| Af0005 | - | - | - | - | - | - | Ciclev10005894m | scaffold_9 | 2452853 | 2455181 | ||||||||||||||||||
| Af1260 | - | - | - | - | - | - | Ciclev10001188m | scaffold_5 | 38869666 | 38875561 | ||||||||||||||||||
| Af1525 | - | - | - | - | - | - | Ciclev10032893m | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
| Al0220 | - | - | - | - | - | - | Ciclev10008097m | scaffold_1 | 3683537 | 3688814 | ||||||||||||||||||
| Bf0193 | O | - | - | - | - | - | SI100,SI109 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
| Lp0029 | - | - | - | - | - | - | Ciclev10003645m | scaffold_5 | 329518 | 331024 | ||||||||||||||||||
| Tf0171 | - | - | - | - | - | - | Ciclev10030688m | scaffold_4 | 25466629 | 25472365 | ||||||||||||||||||
| Tf0447 | - | - | - | - | - | - | Ciclev10021000m | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
| Af0006 | - | - | - | - | - | - | Ciclev10001011m | scaffold_5 | 36883103 | 36887975 | ||||||||||||||||||
| Af1261 | - | - | - | - | - | - | Ciclev10027978m | scaffold_8 | 20321003 | 20329872 | ||||||||||||||||||
| Af1526 | - | - | - | - | - | - | Ciclev10001454m | scaffold_5 | 38852547 | 38855263 | ||||||||||||||||||
| Al0221 | - | - | - | - | - | - | ||||||||||||||||||||||
| Cp1086 | - | - | - | - | - | - | Ciclev10025935m | scaffold_7 | 2390010 | 2391658 | ||||||||||||||||||
| Lp0030 | - | - | - | - | - | - | Ciclev10031831m | scaffold_4 | 23185703 | 23187916 | ||||||||||||||||||
| Tf0448 | - | - | - | - | - | - | Ciclev10026715m | scaffold_7 | 252320 | 254049 | ||||||||||||||||||
| Af0007 | - | - | - | - | - | - | Ciclev10031118m | scaffold_4 | 17014582 | 17026325 | ||||||||||||||||||
| Af1262 | - | - | - | - | - | - | Ciclev10009571m | scaffold_1 | 28424576 | 28427136 | ||||||||||||||||||
| Af1527 | - | - | - | - | - | - | Ciclev10033122m | scaffold_4 | 17175041 | 17177917 | ||||||||||||||||||
| Al0222 | - | - | - | - | - | - | Ciclev10015548m | scaffold_2 | 30607996 | 30610863 | ||||||||||||||||||
| Bf0197 | - | - | - | - | - | - | Ciclev10025476m | scaffold_7 | 5654376 | 5658039 | ||||||||||||||||||
| Cp1093 | - | - | - | - | - | - | Ciclev10009636m | scaffold_1 | 16696979 | 16699623 | ||||||||||||||||||
| Fb0374 | - | - | - | - | - | - | Ciclev10002014m | scaffold_5 | 6777322 | 6781162 | ||||||||||||||||||
| Ov0307 | OOthers | - | - | - | - | - | - | Ciclev10015790m | scaffold_2 | 4937047 | 4940138 | |||||||||||||||||
| Tf0173 | O | - | - | - | - | - | Ciclev10015413m | scaffold_2 | 26097343 | 26099320 | C_unshiu_00259:mRNA_35.1 | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
| Af0008 | - | - | - | - | - | - | Ciclev10017323m | scaffold_2 | 32749064 | 32749699 | ||||||||||||||||||
| Af1263 | - | - | - | - | - | - | Ciclev10005448m | scaffold_9 | 28494348 | 28496251 | ||||||||||||||||||
| Af1528 | - | - | - | - | - | - | Ciclev10009892m | scaffold_1 | 1676368 | 1677018 | ||||||||||||||||||
| Al0223 | - | - | - | - | - | - | Ciclev10011771m | scaffold_6 | 17438270 | 17440122 | C_unshiu_00008:mRNA_127.1 | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
| Bf0200 | OOthers | - | - | - | - | - | - | SI335 | Ciclev10014367m | scaffold_2 | 29022433 | 29030724 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
| Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | C_unshiu_00679:mRNA_13.1 | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
| Ov0308 | - | - | - | - | - | - | Ciclev10032476m | scaffold_4 | 16730150 | 16735004 | ||||||||||||||||||
| Tf0175 | - | - | - | - | - | - | Ciclev10010825m | scaffold_1 | 5054551 | 5056146 | ||||||||||||||||||
| Tf0450 | - | - | - | - | - | - | Ciclev10021535m | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
| Af0009 | - | - | - | - | - | - | Ciclev10024461m | scaffold_3 | 50406028 | 50412944 | ||||||||||||||||||
| Af1264 | - | - | - | - | - | - | Ciclev10026609m | scaffold_7 | 18539347 | 18543298 | ||||||||||||||||||
| Af1529 | - | - | - | - | - | - | Ciclev10005711m | scaffold_9 | 21228791 | 21231253 | ||||||||||||||||||
| Bf0201 | - | - | - | - | - | - | Ciclev10015180m | scaffold_2 | 29370560 | 29376244 | ||||||||||||||||||
| Cp1113 | - | - | - | - | - | - | Ciclev10004638m | scaffold_9 | ||||||||||||||||||||