Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Al0645			-	-	-	-	-	-		Ciclev10033996m	scaffold_4	356772	358913
Al0015			-	-	-	-	-	-		Ciclev10033914m	scaffold_4	25071431	25077010
Al0231			-	-	-	-	-	-		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof									RP-06.1	7.272
Tf0320			-	-	-	-	-	-	SI203	Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	45.716
Edw001		AAvailable marker	-	-	-	-	-	O		Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.1	C_unshiu_00086	99963	109609	Shatterproof
Tf0349			-	-	-	-	-	-		Ciclev10033770m	scaffold_4	20573683	20575539
Al0617		AAvailable marker	O	-	-	-	O	O		Ciclev10033546m	scaffold_4	1021179	1023023	C_unshiu_00012:mRNA_24.1	C_unshiu_00012	188654	191971	Ubiquitin-binding WIYLD domain protein	AGI-07	8.553			JtR-07	74.121
Tf0335			-	-	-	-	-	-	SI014,SI168	Ciclev10033529m	scaffold_4	2457798	2458868	C_unshiu_00979:mRNA_19.1	C_unshiu_00979	85390	86600	C2 domain protein	AGI-07	13.855
Tf0367			-	-	-	-	-	-		Ciclev10033497m	scaffold_4	13941880	13946022
Cte996			-	-	-	-	-	-		Ciclev10033219m	scaffold_4	14022708	14024239
Af1202			-	-	-	-	-	-		Ciclev10033216m	scaffold_4	15927576	15929918
Al0331		AAvailable marker	-	-	-	-	-	O		Ciclev10033190m	scaffold_4	8406632	8407188	C_unshiu_00111:mRNA_9.1	C_unshiu_00111	83531	84087	Hypothetical protein			KmG-09	9.593	JtR-07	52.611			RP-07	19.079
Gn0040		AAvailable marker	-	-	-	-	O	O	SI015,SI337	Ciclev10033176m	scaffold_4	16232756	16233365	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	43.542	KmG-07	56.094	JtR-07	48.672
Af1527			-	-	-	-	-	-		Ciclev10033122m	scaffold_4	17175041	17177917
Af0001			-	-	-	-	-	-		Ciclev10033102m	scaffold_4	25190682	25192326
Af1122			-	-	-	-	-	-		Ciclev10033093m	scaffold_4	23871593	23873478
Af1257			-	-	-	-	-	-		Ciclev10033061m	scaffold_4	25059045	25061910
Fb0343		AAvailable marker	O	-	-	-	-	O		Ciclev10033061m	scaffold_4	25059045	25061910	C_unshiu_00001:mRNA_322.1	C_unshiu_00001	2042062	2044301	U6 snRNA-associated Sm-like protein LSm7			KmG-07
Cp0237			-	-	-	-	-	-		Ciclev10033007m	scaffold_4	10652381	10655082	C_unshiu_00483:mRNA_11.1	C_unshiu_00483	100177	109515	Protein LSD1	AGI-07	35.506
Bf1176			-	-	-	-	-	-		Ciclev10033000m	scaffold_4	24312108	24313141
Lp0044			-	-	-	-	-	-		Ciclev10032981m	scaffold_4	23618424	23622719
Lp0142			-	-	-	-	-	-		Ciclev10032977m	scaffold_4	2976873	2978308
Af1196			-	-	-	-	-	-		Ciclev10032970m	scaffold_4	21090408	21092841
Af1330			-	-	-	-	-	-		Ciclev10032948m	scaffold_4	19927084	19929921
Gmom28			-	-	-	-	-	-		Ciclev10032943m	scaffold_4	12596113	12597155
Ov0116			-	-	-	-	-	-		Ciclev10032931m	scaffold_4	3193875	3196468	C_unshiu_00342:mRNA_22.1	C_unshiu_00342	154980	164222	Hypothetical protein			KmG-02	53.208	JtR-02	27.051			RP-02.2	5.192
Cp0039			O	-	-	-	-	-		Ciclev10032929m	scaffold_4	1549679	1551396	C_unshiu_00012:mRNA_98.1	C_unshiu_00012	722822	724539	LOB domain-containing protein 12	AGI-07	11.882
Lp0112		AAvailable marker	O	-	-	-	-	-		Ciclev10032923m	scaffold_4	3749809	3751724	C_unshiu_00236:mRNA_28.1	C_unshiu_00236	161422	163318	ATP synthase subunit d, mitochondrial	AGI-07	19.603							RP-07	50.962
Lp0012			-	-	-	-	-	-		Ciclev10032909m	scaffold_4	21351776	21355223
Mf0010		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI048,SI149	Ciclev10032902m	scaffold_4	19467669	19468803	C_unshiu_00099:mRNA_4.1	C_unshiu_00099	12446	13357	30S ribosomal protein 3, chloroplastic	AGI-07	55.503	KmG-07	42.271	JtR-07	35.215	NAT-07
Cp0439			-	-	-	-	-	-		Ciclev10032902m	scaffold_4	19467669	19468803
Af1525			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Tf0202			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Tf0243			-	-	-	-	-	-	SI231	Ciclev10032893m	scaffold_4	3636667	3641089	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8
Cp0239			-	-	-	-	-	-		Ciclev10032871m	scaffold_4	10615005	10617641
Mf0019	Mf0018.2		-	-	-	-	-	-		Ciclev10032864m	scaffold_4	12356081	12357713
Tf0270			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0009.2			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0410		AAvailable marker	O	-	-	-	O	O		Ciclev10032838m	scaffold_4	213798	215848	C_unshiu_00168:mRNA_34.1	C_unshiu_00168	273522	275858	Pollen-specific protein SF3	AGI-07	6.146
Tf0045			-	-	-	-	-	-	SI303,SI321	Ciclev10032837m	scaffold_4	23496020	23497466	C_unshiu_00001:mRNA_74.1	C_unshiu_00001	490607	491890	Homeobox transcription factor	AGI-07	74.573
Al0034			-	-	-	-	-	-		Ciclev10032830m	scaffold_4	17944545	17945441
Cp1907			-	-	-	-	-	-		Ciclev10032825m	scaffold_4	17763596	17766370
Tf0148		AAvailable marker	O	-	-	-	O	O	SI119	Ciclev10032816m	scaffold_4	20998708	21001535	C_unshiu_00010:mRNA_116.1	C_unshiu_00010	869802	872410	Putative WRKY transcription factor 75	AGI-07	64.812
Ov0002		AAvailable marker	O	-	-	-	O	O	SI110,SI179	Ciclev10032770m	scaffold_4	2422861	2424838	C_unshiu_00979:mRNA_13.2	C_unshiu_00979	50508	52478	60S ribosomal protein L10	AGI-07	13.657			JtR-07	68.221			RP-07	82.035
Ov0511			-	-	-	-	-	-		Ciclev10032764m	scaffold_4	6101482	6103243
Bf0034			-	-	-	-	-	-		Ciclev10032747m	scaffold_4	16821255	16823718
Wy0022			-	-	-	-	-	-		Ciclev10032739m	scaffold_4	24914068	24915637
Al0206		AAvailable marker	-	-	-	-	O	O		Ciclev10032727m	scaffold_4	12309480	12311438	C_unshiu_00365:mRNA_26.1	C_unshiu_00365	192643	194502	NADPH-dependent codeinone reductase-like protein	AGI-07	38.565			JtR-07	52.611			RP-07	29.935
Lp0022			-	-	-	-	-	-		Ciclev10032703m	scaffold_4	2422861	2424838
Cp1336			-	-	-	-	-	-		Ciclev10032697m	scaffold_4	3335945	3338632
Gn0002			-	-	-	-	-	-		Ciclev10032697m	scaffold_4	3335945	3338632	C_unshiu_00465:mRNA_12.1	C_unshiu_00465	149021	153095	Hypothetical protein	AGI-07	90.233			JtR-07	64.361
Af1623			-	-	-	-	-	-		Ciclev10032683m	scaffold_4	612480	615318	C_unshiu_01079:mRNA_2.2	C_unshiu_01079	3136	5814	Thylakoid lumenal 15 kDa protein 1, chloroplastic	AGI-07	7.907
Af3142			-	-	-	-	-	-		Ciclev10032672m	scaffold_4	9412864	9416686
Lp0217			-	-	-	-	-	-		Ciclev10032654m	scaffold_4	18274171	18276675
Af1690			-	-	-	-	-	-		Ciclev10032651m	scaffold_4	23923757	23925178	C_unshiu_00001:mRNA_137.1	C_unshiu_00001	920379	924128	Hypothetical protein	AGI-07	77.752
Tf0369			-	-	-	-	-	-		Ciclev10032644m	scaffold_4	12320439	12324228
Bf0027			-	-	-	-	-	-	SI372	Ciclev10032632m	scaffold_4	14565456	14567860	C_unshiu_00113:mRNA_23.1	C_unshiu_00113	169695	172465	Superoxide dismutase	AGI-07	40.515
Cp0861			-	-	-	-	-	-		Ciclev10032618m	scaffold_4	6335138	6336149
Gn0037			-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog	AGI-08	55.656
Tf0005.2		AAvailable marker	O	-	-	-	-	O		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog
Al0649	Al0649.snA		-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279
Bf0006			-	-	-	-	-	-		Ciclev10032578m	scaffold_4	21042049	21048279
Tf0313			-	-	-	-	-	-		Ciclev10032572m	scaffold_4	20533474	20543182
Edb002			-	-	-	-	-	-		Ciclev10032572m	scaffold_4	20533474	20543182
Wy0025			-	-	-	-	-	-	SI004	Ciclev10032547m	scaffold_4	24434005	24435526	C_unshiu_00001:mRNA_229.1	C_unshiu_00001	1446446	1447952	NAC domain-containing protein 29
Wy0025.2	Wy0025.em		-	-	-	-	-	-		Ciclev10032547m	scaffold_4	24434005	24435526
Cp0089		Bno homozygous cultivar with minor allele	O	-	O	-	-	-		Ciclev10032543m	scaffold_4	23858830	23861090	C_unshiu_00001:mRNA_128.1	C_unshiu_00001	852968	856494	CAAX amino terminal protease family protein	AGI-07	77.194
Af1545			-	-	-	-	-	-		Ciclev10032524m	scaffold_4	2153718	2155194
Tf0043			-	-	-	-	-	-		Ciclev10032519m	scaffold_4	24820269	24824732	C_unshiu_00001:mRNA_295.1	C_unshiu_00001	1871301	1874281	Agamous-like MADS-box protein AGL15	AGI-07	84.593
Af1387			-	-	-	-	-	-		Ciclev10032517m	scaffold_4	22676008	22680724
Vt0028			-	-	-	-	-	-		Ciclev10032489m	scaffold_4	18947498	18950949	C_unshiu_00039:mRNA_34.1	C_unshiu_00039	255025	269908	Hypothetical protein	AGI-07	51.998	KmG-07	44.183	JtR-07	39.088
Ks9013			-	-	-	-	-	-		Ciclev10032489m	scaffold_4	18947498	18950949	C_unshiu_00039:mRNA_34.1	C_unshiu_00039	255025	269908	Hypothetical protein			KmG-07	45.284	JtR-07	39.119
Af1405			-	-	-	-	-	-		Ciclev10032481m	scaffold_4	24503838	24505365	C_unshiu_00001:mRNA_238.1	C_unshiu_00001	1513811	1515209	FH interacting protein 1	AGI-07	83.026
Ov0308			-	-	-	-	-	-		Ciclev10032476m	scaffold_4	16730150	16735004
Cp1854			-	-	-	-	-	-		Ciclev10032474m	scaffold_4	20917509	20920961
Af1680			-	-	-	-	-	-		Ciclev10032474m	scaffold_4	20917509	20920961
Cp1050			-	-	-	-	-	-		Ciclev10032471m	scaffold_4	1537835	1540818
Af1037			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1969590	1972842	C_unshiu_00058:mRNA_65.1	C_unshiu_00058	521901	525000	Uroporphyrinogen decarboxylase	AGI-04	50.972
Vt0020			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1970129	1972842
Bf0109			-	-	-	-	-	-	SI233	Ciclev10032461m	scaffold_4	1970129	1972842	C_unshiu_00058:mRNA_65.1	C_unshiu_00058	521901	525000	Uroporphyrinogen decarboxylase									RP-07	51.394
If0005		OOthers	-	-	-	-	-	-		Ciclev10032438m	scaffold_4	20629463	20633356	C_unshiu_00015:mRNA_81.1	C_unshiu_00015	667011	671011	Glucosamine/galactosamine-6-phosphate isomerase family protein					JtR-07	25.458	NAT-07	15.764
Cp0093		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10032427m	scaffold_4	23596434	23599906	C_unshiu_00001:mRNA_89.1	C_unshiu_00001	587949	598235	Putative WRKY transcription factor 72	AGI-07	74.537
Cp2118			-	-	-	-	-	-		Ciclev10032406m	scaffold_4	14565456	14568265	C_unshiu_00113:mRNA_23.1	C_unshiu_00113	169695	172465	Superoxide dismutase	AGI-07	37.152
Af1134			-	-	-	-	-	-		Ciclev10032388m	scaffold_4	21443803	21447097
Af1442			-	-	-	-	-	-		Ciclev10032384m	scaffold_4	24610352	24612338
Af1376			-	-	-	-	-	-		Ciclev10032383m	scaffold_4	428646	432345
Cp0086		OOthers	O	-	-	-	-	-		Ciclev10032381m	scaffold_4	24154856	24157188
Cp0062			O	-	-	-	-	-		Ciclev10032378m	scaffold_4	16107199	16109587	C_unshiu_01642:mRNA_2.1	C_unshiu_01642	16316	20085	Ribose-phosphate diphosphokinase	AGI-07	45.716
Af1212			-	-	-	-	-	-		Ciclev10032370m	scaffold_4	17118916	17121135
Al0030			-	-	-	-	-	-		Ciclev10032368m	scaffold_4	18423063	18426424
Af1266			-	-	-	-	-	-		Ciclev10032367m	scaffold_4	8400378	8404853
Fb0208			-	-	-	-	-	-		Ciclev10032366m	scaffold_4	23569924	23573605
Wy0011		OOthers	O	-	-	-	-	-	SI091	Ciclev10032364m	scaffold_4	24417602	24419019	C_unshiu_00001:mRNA_226.1	C_unshiu_00001	1429943	1431279	Enoyl CoA hydratase/isomerase	AGI-07	86.288
Cp1340			-	-	-	-	-	-		Ciclev10032342m	scaffold_4	125954	131376
Lp0219			-	-	-	-	-	-		Ciclev10032329m	scaffold_4	6128952	6131314	C_unshiu_01202:mRNA_8.1	C_unshiu_01202	57691	60017	Acyl-CoA N-acyltransferases superfamily protein isoform 1	AGI-01	61.636					NAT-01S	60.000
Af1509			-	-	-	-	-	-		Ciclev10032314m	scaffold_4	23564251	23568956	C_unshiu_00001:mRNA_83.3	C_unshiu_00001	555659	560336	Hypersensitive-induced response protein 1	AGI-07	73.796
Vs0008			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892
Al0505			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892	C_unshiu_00012:mRNA_14.1	C_unshiu_00012	117194	125051	Plasma membrane intrinsic protein									RP-07	51.815
Gmom22			-	-	-	-	-	-		Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1	AGI-07	78.469	KmG-07	2.659
Tf0323			-	-	-	-	-	-	SI030	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Tf0339			-	-	-	-	-	-	SI019	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Cp1352			-	-	-	-	-	-		Ciclev10032297m	scaffold_4	8198787	8204052
Tf0321			-	-	-	-	-	-	SI003	Ciclev10032283m	scaffold_4	24341642	24346244	C_unshiu_00001:mRNA_213.1	C_unshiu_00001	1358115	1363266	Putative WRKY transcription factor 57
Bf1243			-	-	-	-	-	-		Ciclev10032276m	scaffold_4	24657015	24660141	C_unshiu_00001:mRNA_262.1	C_unshiu_00001	1663630	1666687	U3 small nucleolar ribonucleoprotein IMP4	AGI-07	84.114
Tf0198		AAvailable marker	O	-	-	-	-	O		Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7
Gn0048		AAvailable marker	-	O	-	-	O	O	SI289	Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7	AGI-07	74.225	KmG-07	7.964	JtR-07	4.200
Fb0234			-	-	-	-	-	-	SI250,SI265	Ciclev10032271m	scaffold_4	16176836	16178421	C_unshiu_00086:mRNA_8.1	C_unshiu_00086	52764	54349	Protodermal factor 1.3, putative	AGI-07	45.424							RP-07	30.993
Vt0002			-	-	-	-	-	-		Ciclev10032270m	scaffold_4	20868750	20872170
Af1381			-	-	-	-	-	-		Ciclev10032242m	scaffold_4	24612463	24616531
Mf0059			-	-	-	-	-	-		Ciclev10032222m	scaffold_4	1586790	1589604
Af1420			-	-	-	-	-	-		Ciclev10032187m	scaffold_4	19762282	19765759
Lp0027			-	-	-	-	-	-		Ciclev10032174m	scaffold_4	14967254	14971449
Af2075			-	-	-	-	-	-		Ciclev10032164m	scaffold_4	22801203	22802540
Af1495			-	-	-	-	-	-		Ciclev10032113m	scaffold_4	22523092	22528307	C_unshiu_00004:mRNA_77.1	C_unshiu_00004	548746	553542	UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3	AGI-07	69.544
Al0332			-	-	-	-	-	-		Ciclev10032086m	scaffold_4	14895728	14896991
Af1349			-	-	-	-	-	-		Ciclev10032073m	scaffold_4	3290273	3293928
Af1657			-	-	-	-	-	-		Ciclev10032070m	scaffold_4	22584852	22588013
Af1432			-	-	-	-	-	-		Ciclev10032069m	scaffold_4	23666784	23669594	C_unshiu_00001:mRNA_103.1	C_unshiu_00001	659252	662036	UDP-galactose/UDP-glucose transporter 5B	AGI-07	72.828
Al0242			-	-	-	-	-	-		Ciclev10032030m	scaffold_4	3437577	3441367
Gmom27			-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971
Edb003		OOthers	-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971	C_unshiu_01260:mRNA_4.1	C_unshiu_01260	30136	32342	Putative WRKY transcription factor 28	AGI-07	41.830
Tf0365			-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971
Mf0089			-	-	-	-	-	-		Ciclev10031989m	scaffold_4	12678671	12681681
Bf0113			-	-	-	-	-	-		Ciclev10031989m	scaffold_4	12678671	12681681
Vt0029			-	-	-	-	-	-		Ciclev10031975m	scaffold_4	2451345	2454325	C_unshiu_00979:mRNA_17.1	C_unshiu_00979	79016	81937	GroES-like zinc-binding alcohol dehydrogenase family protein	AGI-07	13.238
Cp0870		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI338	Ciclev10031974m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	5.180
Cp1908			-	-	-	-	-	-		Ciclev10031956m	scaffold_4	17499130	17500420
Af1150			-	-	-	-	-	-		Ciclev10031943m	scaffold_4	25409035	25412164
Tf0094			-	-	-	-	-	-	SI006	Ciclev10031937m	scaffold_4	23957038	23959134	C_unshiu_00001:mRNA_145.1	C_unshiu_00001	950657	954895	Myb family transcription factor APL	AGI-07	77.141
Al0613			-	-	-	-	-	-		Ciclev10031928m	scaffold_4	23078232	23081009
Tf0100			-	-	-	-	-	-		Ciclev10031899m	scaffold_4	22912615	22914628
Cp1196			-	-	-	-	-	-		Ciclev10031889m	scaffold_4	19626061	19629792
Cp0083			O	-	-	-	-	-		Ciclev10031889m	scaffold_4	19626061	19629792
Cp1407			-	-	-	-	-	-		Ciclev10031886m	scaffold_4	21243085	21244983
Af1474			-	-	-	-	-	-		Ciclev10031886m	scaffold_4	21243085	21244983
Cp0006			O	-	-	-	-	-		Ciclev10031874m	scaffold_4	14610897	14614381
Tf0318		AAvailable marker	O	O	O	-	O	O		Ciclev10031873m	scaffold_4	13751433	13754767	C_unshiu_00240:mRNA_28.2	C_unshiu_00240	282002	285335	Transcription factor bHLH137	AGI-07	37.467
Ov0507		AAvailable marker	-	-	-	-	-	O		Ciclev10031860m	scaffold_4	642157	644823
Ov0508	Ov0507.2		-	-	-	-	-	-	SI322	Ciclev10031860m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	8.291			JtR-07	76.060
Cp1302			-	-	-	-	-	-		Ciclev10031853m	scaffold_4	7407834	7414015
Tf0337		AAvailable marker	O	-	-	-	O	O		Ciclev10031846m	scaffold_4	19635415	19637061	C_unshiu_00099:mRNA_23.1	C_unshiu_00099	186480	188051	Ap2 erf and b3 domain-containing transcription factor rav2	AGI-07	54.869
Tf0267		AAvailable marker	O	-	-	-	O	O		Ciclev10031834m	scaffold_4	12571526	12575185	C_unshiu_00847:mRNA_8.1	C_unshiu_00847	48651	52296	Squamosa promoter-binding-like protein 13	AGI-07	37.800
Lp0030			-	-	-	-	-	-		Ciclev10031831m	scaffold_4	23185703	23187916
Tf0165		AAvailable marker	O	-	-	-	O	O		Ciclev10031793m	scaffold_4	19605473	19608059	C_unshiu_00099:mRNA_19.1	C_unshiu_00099	154500	156794	Two-component response regulator ARR18	AGI-07	55.503
Af1569			-	-	-	-	-	-		Ciclev10031754m	scaffold_4	23192472	23198396
Tf0227		AAvailable marker	O	-	-	-	O	O		Ciclev10031750m	scaffold_4	21666061	21671693	C_unshiu_00010:mRNA_30.1	C_unshiu_00010	183508	188843	Trihelix transcription factor GT-1	AGI-08	35.927
Tf0403			-	-	-	-	-	-		Ciclev10031750m	scaffold_4	21666061	21671693
Af1187			-	-	-	-	-	-		Ciclev10031748m	scaffold_4	24996017	25000652	C_unshiu_00001:mRNA_314.1	C_unshiu_00001	1991693	1996431	Tocopherol O-methyltransferase	AGI-07	85.027
Af1106			-	-	-	-	-	-		Ciclev10031741m	scaffold_4	22131142	22133007
Cp0634			-	-	-	-	-	-		Ciclev10031740m	scaffold_4	15660463	15665838	C_unshiu_00824:mRNA_8.1	C_unshiu_00824	96745	119992	Hypothetical protein	AGI-07	32.589
Cp0033			O	-	-	-	-	-		Ciclev10031724m	scaffold_4	23556540	23559896
Lp0017			-	-	-	-	-	-		Ciclev10031724m	scaffold_4	23556540	23559896
Al0524		AAvailable marker	O	O	-	-	O	O	SI043,SI341	Ciclev10031723m	scaffold_4	115362	118025	C_unshiu_02038:mRNA_4.1	C_unshiu_02038	34256	38775	Hypothetical protein	AGI-07	5.972			JtR-07	76.060			RP-07	74.381
Cp0233			-	-	-	-	-	-		Ciclev10031694m	scaffold_4	11210879	11216325	C_unshiu_00061:mRNA_64.1	C_unshiu_00061	550725	556167	Ribose-phosphate pyrophosphokinase 4	AGI-07	37.826
Af1265			-	-	-	-	-	-		Ciclev10031646m	scaffold_4	22789104	22792252
Tf0156			-	-	-	-	-	-		Ciclev10031622m	scaffold_4	25027357	25030551
Af1438			-	-	-	-	-	-		Ciclev10031620m	scaffold_4	642157	644823
Af1088			O	-	-	-	-	-		Ciclev10031611m	scaffold_4	17171114	17174966
Tf0310			-	-	-	-	-	-		Ciclev10031598m	scaffold_4	19681884	19685929	C_unshiu_00099:mRNA_27.1	C_unshiu_00099	233334	237357	NAC domain-containing protein 8	AGI-07	54.869
Af1663			-	-	-	-	-	-		Ciclev10031595m	scaffold_4	21841321	21845493
Af1541			-	-	-	-	-	-		Ciclev10031567m	scaffold_4	10510018	10517939
Lp0224			-	-	-	-	-	-		Ciclev10031564m	scaffold_4	9627760	9633617
Af1086			-	-	-	-	-	-		Ciclev10031563m	scaffold_4	10510018	10517939	C_unshiu_00028:mRNA_1.2	C_unshiu_00028	4115	12036	AP-2 complex subunit mu	AGI-05	41.306
Af1296			-	-	-	-	-	-		Ciclev10031556m	scaffold_4	19133592	19137895
Bf0031			O	-	-	-	-	-		Ciclev10031547m	scaffold_4	4077557	4083819	C_unshiu_00306:mRNA_12.1	C_unshiu_00306	51707	57589	Chorismate synthase	AGI-07	32.590							RP-07	19.092
Cp1584		AAvailable marker	-	-	-	-	-	O		Ciclev10031523m	scaffold_4	201556	204527	C_unshiu_00168:mRNA_36.1	C_unshiu_00168	285304	287905	Cell division cycle 20.1, cofactor of APC complex
Af3017			-	-	-	-	-	-		Ciclev10031492m	scaffold_4	24401841	24406470	C_unshiu_00001:mRNA_224.1	C_unshiu_00001	1415778	1420221	Serine/threonine-protein kinase PBS1	AGI-07	83.217
Al0408			O	-	-	-	-	-		Ciclev10031487m	scaffold_4	23737757	23740513	C_unshiu_00001:mRNA_109.1	C_unshiu_00001	727392	729266	F-box/kelch-repeat protein SKIP11	AGI-07	75.917	KmG-07	13.235	JtR-07	1.788
Af1039			-	-	-	-	-	-		Ciclev10031458m	scaffold_4	14381144	14384897
Af1302			-	-	-	-	-	-		Ciclev10031454m	scaffold_4	14457766	14462726
Al0250			-	-	-	-	-	-		Ciclev10031445m	scaffold_4	24770754	24773948
Fb0219			-	-	-	-	-	-		Ciclev10031436m	scaffold_4	21153791	21158006	C_unshiu_00010:mRNA_101.1	C_unshiu_00010	718703	722812	F-box only protein 6	AGI-03	46.274
Vt0017			-	-	-	-	-	-		Ciclev10031431m	scaffold_4	23705523	23709604
Cp1279		AAvailable marker	-	-	-	-	O	O		Ciclev10031414m	scaffold_4	12900777	12903692	C_unshiu_00461:mRNA_17.1	C_unshiu_00461	144878	147555	Ornithine aminotransferase	AGI-07	40.184
Vt0027			-	-	-	-	-	-		Ciclev10031408m	scaffold_4	303399	306794
Cp1201			-	-	-	-	-	-		Ciclev10031397m	scaffold_4	19416844	19420948
Af1656			-	-	-	-	-	-		Ciclev10031396m	scaffold_4	2404353	2407969
Ov0105		MDisagree by Marco analysis	O	-	-	-	-	-	SI126,SI278	Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant							NAT-07	36.023	RP-07
Ov0105.2	Ov0106.2		-	-	-	-	-	-		Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant	AGI-07	74.064	KmG-07	15.390	JtR-07	5.947
Cp0057			-	-	-	-	-	-		Ciclev10031335m	scaffold_4	24227703	24230754	C_unshiu_00001:mRNA_187.1	C_unshiu_00001	1244353	1247404	DUF1336 family protein	AGI-07	79.269
Af1505			-	-	-	-	-	-		Ciclev10031326m	scaffold_4	1531262	1535758	C_unshiu_00012:mRNA_96.1	C_unshiu_00012	704342	708725	Multiple inositol polyphosphate phosphatase 1	AGI-07	12.283
Mf0034		OOthers	O	-	-	-	-	-		Ciclev10031304m	scaffold_4	1559490	1563887	C_unshiu_00012:mRNA_100.1	C_unshiu_00012	732963	736971	DEAD-box ATP-dependent RNA helicase 27									RP-07	73.631
Af1279			-	-	-	-	-	-		Ciclev10031302m	scaffold_4	14510787	14516311
Af1464			-	-	-	-	-	-		Ciclev10031253m	scaffold_4	3226868	3232418
Ov0505		AAvailable marker	-	-	-	-	-	O		Ciclev10031252m	scaffold_4	16626338	16629094	C_unshiu_00250:mRNA_14.1	C_unshiu_00250	82573	84397	Tyrosine decarboxylase			KmG-07	53.887	JtR-07	48.672	NAT-07	3.814
Ov0506	Ov0505.2		-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0010			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0016			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Af1238			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Af1523			-	-	-	-	-	-		Ciclev10031240m	scaffold_4	6231492	6235447
Cp0061			O	-	-	-	-	-		Ciclev10031220m	scaffold_4	22577317	22582276
Bf0017			-	-	-	-	-	-		Ciclev10031215m	scaffold_4	2131158	2133384
If0204			-	-	-	-	-	-		Ciclev10031206m	scaffold_4	23431992	23438280
Bf0232			-	-	-	-	-	-		Ciclev10031191m	scaffold_4	21861774	21865635	C_unshiu_01346:mRNA_3.1	C_unshiu_01346	18206	22054	T-complex protein 1 subunit delta	AGI-07	67.250							RP-07	6.705
Cp0088			O	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723
Tf0107			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723
Tf0424			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723	C_unshiu_00001:mRNA_134.1	C_unshiu_00001	904872	908655	Apyrase	AGI-07	77.041
Af1492			-	-	-	-	-	-		Ciclev10031173m	scaffold_4	23365418	23370600
Cp1369			-	-	-	-	-	-		Ciclev10031159m	scaffold_4	24737050	24741836
Af1447			-	-	-	-	-	-		Ciclev10031155m	scaffold_4	22802995	22807340	C_unshiu_00004:mRNA_35.1	C_unshiu_00004	275820	279748	Aldehyde dehydrogenase	AGI-07	70.744
Tf0076			-	-	-	-	-	-	SI266	Ciclev10031150m	scaffold_4	7200135	7204232	C_unshiu_00013:mRNA_63.3	C_unshiu_00013	459064	463137	NAC domain-containing protein 78	AGI-07	38.565
Tf0090		AAvailable marker	O	-	-	-	-	O		Ciclev10031135m	scaffold_4	16519046	16521918	C_unshiu_00086:mRNA_45.1	C_unshiu_00086	374812	377677	Transcription factor bHLH62
Cp1008			-	-	-	-	-	-		Ciclev10031135m	scaffold_4	16519046	16521918
Tf0087			-	-	-	-	-	-	SI166,SI271,SI287	Ciclev10031120m	scaffold_4	11412331	11417624	C_unshiu_00019:mRNA_18.1	C_unshiu_00019	190344	195992	Two-component response regulator-like APRR2	AGI-07	35.897
Af0007			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Tf0112			O	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325	C_unshiu_00225:mRNA_9.1	C_unshiu_00225	37090	44898	Regulation of nuclear pre-mRNA domain-containing protein 1B	AGI-07	43.014
Tf0426			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Bf0216			-	-	-	-	-	-		Ciclev10031058m	scaffold_4	15058920	15066775
Gn0062.2		OOthers	-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Gn0071		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI363	Ciclev10031039m	scaffold_4	25506446	25511133	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-07	86.113
Af1163			-	-	-	-	-	-		Ciclev10031039m	scaffold_4	25506446	25511133
Cp0059			O	-	-	-	-	-		Ciclev10031015m	scaffold_4	23075728	23081009	C_unshiu_00001:mRNA_13.1	C_unshiu_00001	89828	96147	Protein NLRC3	AGI-08	86.856
Gn0061.2		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10031014m	scaffold_4	25500601	25505812	C_unshiu_00001:mRNA_343.1	C_unshiu_00001	2191017	2199824	9-cis-epoxycarotenoid dioxygenase 4	AGI-06	20.248
Gn0070			-	-	-	-	-	-		Ciclev10031014m	scaffold_4	25500601	25505812
Cp1796			-	-	-	-	-	-		Ciclev10031010m	scaffold_4	1058825	1062698
Bf0021			O	-	-	-	-	-		Ciclev10031010m	scaffold_4	1058825	1062698	C_unshiu_00012:mRNA_26.1	C_unshiu_00012	227838	231495	Anthranilate synthase component I									RP-07	52.587
Tf0167			-	-	-	-	-	-	SI230,SI241,SI247	Ciclev10030998m	scaffold_4	17143350	17147918	C_unshiu_00478:mRNA_2.1	C_unshiu_00478	19232	27824	Sigma factor	AGI-07	46.244
Lp0234			-	-	-	-	-	-		Ciclev10030998m	scaffold_4	17143350	17147918
Af1035			O	-	-	-	-	-		Ciclev10030982m	scaffold_4	23469184	23472872
Gn0018			-	-	-	-	-	-		Ciclev10030969m	scaffold_4	5053540	5061039	C_unshiu_00616:mRNA_15.1	C_unshiu_00616	99349	106841	V-type H+-transporting ATPase subunit A	AGI-08	84.345	KmG-02	16.986
Lp0212			O	-	-	-	-	-		Ciclev10030930m	scaffold_4	22697056	22699336	C_unshiu_00004:mRNA_48.1	C_unshiu_00004	381547	383756	Polygalacturonase 1 beta-like protein 3	AGI-07	69.544
Tf0248			-	-	-	-	-	-		Ciclev10030929m	scaffold_4	15216527	15221460
Ov0129	Ov0129.k		-	-	-	-	-	-		Ciclev10030928m	scaffold_4	2717014	2719856
Lp0107			-	-	-	-	-	-		Ciclev10030913m	scaffold_4	21916592	21922770
Cp0457			-	-	-	-	-	-		Ciclev10030910m	scaffold_4	22253189	22257152
Cp1278			-	-	-	-	-	-		Ciclev10030907m	scaffold_4	12263755	12266130
Lp0026			-	-	-	-	-	-		Ciclev10030880m	scaffold_4	3323209	3331825
Cp0481			-	-	-	-	-	-		Ciclev10030851m	scaffold_4	6970624	6975096
Af1295			-	-	-	-	-	-		Ciclev10030829m	scaffold_4	3468083	3477274
Af1614			-	-	-	-	-	-		Ciclev10030819m	scaffold_4	204633	209475
Af1277			-	-	-	-	-	-		Ciclev10030804m	scaffold_4	23811511	23814763
Bf0032			O	-	-	-	-	-		Ciclev10030771m	scaffold_4	5378983	5392182
Cp2117			-	-	-	-	-	-		Ciclev10030756m	scaffold_4	14510787	14515793
Af1259			-	-	-	-	-	-		Ciclev10030701m	scaffold_4	15528851	15538252
Tf0065			-	-	-	-	-	-	SI142	Ciclev10030696m	scaffold_4	13945795	13951313	C_unshiu_00357:mRNA_3.1	C_unshiu_00357	35189	39739	Auxin response factor	AGI-07	41.876
Tf0105			-	-	-	-	-	-		Ciclev10030696m	scaffold_4	13945795	13951313
Tf0171			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0023.2			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Lp0106			-	-	-	-	-	-		Ciclev10030683m	scaffold_4	22868978	22880751
Cp0452		AAvailable marker	-	-	-	-	O	O		Ciclev10030661m	scaffold_4	23575399	23582495	C_unshiu_00001:mRNA_85.1	C_unshiu_00001	566935	573821	Alpha-amylase-like 3 isoform 1	AGI-07	75.350
Cp0675		AAvailable marker	O	-	-	-	O	O		Ciclev10030633m	scaffold_4	20294240	20301426	C_unshiu_00015:mRNA_33.1	C_unshiu_00015	302440	309360	DNA-directed RNA polymerase	AGI-07	59.793
Lp0232			O	-	-	-	-	-		Ciclev10030590m	scaffold_4	21120135	21127140	C_unshiu_00010:mRNA_105.1	C_unshiu_00010	751317	757205	CHASE-domain containing histidine kinase 1									RP-07	19.079
Tf0213		OOthers	O	-	-	-	-	-		Ciclev10030571m	scaffold_4	18839546	18848948	C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative	AGI-07	48.581
Cp0454			-	-	-	-	-	-		Ciclev10030551m	scaffold_4	23200936	23206254	C_unshiu_00001:mRNA_32.1	C_unshiu_00001	214996	218740	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic	AGI-07	73.034
Al0006			-	-	-	-	-	-		Ciclev10030549m	scaffold_4	2823200	2830227
Bf0007			-	-	-	-	-	-		Ciclev10030544m	scaffold_4	19947429	19954736
Tf0212			-	-	-	-	-	-	SI196	Ciclev10030538m	scaffold_4	19816800	19825304	C_unshiu_00535:mRNA_20.1	C_unshiu_00535	166525	174142	Putative nuclear matrix constituent protein 1-like protein	AGI-07	56.586
Tf0390			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Tf0422			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Fb0322			O	-	-	-	-	-		Ciclev10030532m	scaffold_4	3249710	3254808	C_unshiu_00342:mRNA_35.1	C_unshiu_00342	217525	222590	Splicing factor 3B subunit 3	AGI-07	14.580			JtR-07	64.384			RP-07	47.636
Af1399			-	-	-	-	-	-		Ciclev10030527m	scaffold_4	19931958	19937465
Tf0266			-	-	-	-	-	-		Ciclev10030510m	scaffold_4	18456751	18473188
Tf0303			-	-	-	-	-	-	SI082	Ciclev10030491m	scaffold_4	6325180	6334300	C_unshiu_00210:mRNA_10.1	C_unshiu_00210	52148	60690	Putative lysine-specific demethylase ELF6
Fb1134.2			-	-	-	-	-	-		Ciclev10030474m	scaffold_4	9547707	9559498	C_unshiu_00140:mRNA_14.1	C_unshiu_00140	164689	176715	DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5	AGI-07	38.546
Tf0235		MDisagree by Marco analysis	O	-	-	O	-	-		Ciclev10030472m	scaffold_4	17057658	17074755	C_unshiu_00225:mRNA_13.1	C_unshiu_00225	75706	96678	TATA-binding protein-associated factor 172	AGI-07	43.879
Af1591			-	-	-	-	-	-		Ciclev10030412m	scaffold_8	23674833	23676979
Af1398			-	-	-	-	-	-		Ciclev10030393m	scaffold_8	7899376	7902959	C_unshiu_00887:mRNA_6.1	C_unshiu_00887	49120	57547	Hypothetical protein	AGI-08	57.551
Tf0195		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10030351m	scaffold_8	67997	74191	C_unshiu_01137:mRNA_4.1	C_unshiu_01137	30837	36569	AT-rich interactive domain-containing protein 3	AGI-08	87.683
Tf0200			O	-	-	-	-	-		Ciclev10030297m	scaffold_8	21095569	21102194
Ov0324		AAvailable marker	-	-	-	-	-	O		Ciclev10030198m	scaffold_8	22575845	22578398	C_unshiu_01619:mRNA_6.1	C_unshiu_01619	15139	24519	Hypothetical protein			KmG-08	23.615
Tf0014.2			-	-	-	-	-	-		Ciclev10030185m	scaffold_8	24976315	24979483	C_unshiu_00271:mRNA_9.1	C_unshiu_00271	56325	61820	Transcription factor	AGI-08
Fb2130			-	-	-	-	-	-	SI069,SI117	Ciclev10030030m	scaffold_8	24341129	24344795	C_unshiu_00021:mRNA_68.1	C_unshiu_00021	452003	461315	Hypothetical protein	AGI-08	11.809	KmG-08	11.813
Al0515		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI178	Ciclev10030023m	scaffold_8	2673135	2674232	C_unshiu_00152:mRNA_38.1	C_unshiu_00152	273851	275034	DNA-damage-repair/toleration protein DRT100	AGI-08	73.663			JtR-08	14.154	NAT-081	10.596
Fb0221			-	-	-	-	-	-		Ciclev10029932m	scaffold_8	8756442	8760308
Tf0246			-	-	-	-	-	-		Ciclev10029834m	scaffold_8	5718913	5719431
Af1354			-	-	-	-	-	-		Ciclev10029831m	scaffold_8	21348947	21352692
Lp0038			-	-	-	-	-	-		Ciclev10029808m	scaffold_8	6686602	6688894
Al0521			-	-	-	-	-	-		Ciclev10029787m	scaffold_8	23136753	23137537
Vt0014			-	-	-	-	-	-		Ciclev10029694m	scaffold_8	21102979	21105476
Af1281			-	-	-	-	-	-		Ciclev10029683m	scaffold_8	20366637	20367616
Fb0246			-	-	-	-	-	-		Ciclev10029680m	scaffold_8	2403492	2406922	C_unshiu_00363:mRNA_27.1	C_unshiu_00363	170901	174318	Hypothetical protein	AGI-08	80.078
Af1204			-	-	-	-	-	-		Ciclev10029631m	scaffold_8	24097206	24099101
Af2786			-	-	-	-	-	-		Ciclev10029628m	scaffold_8	20547180	20549390
Af1486			-	-	-	-	-	-		Ciclev10029576m	scaffold_8	17510926	17513265	C_unshiu_00962:mRNA_1.1	C_unshiu_00962	434	2684	Prefoldin subunit 4	AGI-08	59.562
Af1575			-	-	-	-	-	-		Ciclev10029551m	scaffold_8	17524835	17526697	C_unshiu_02252:mRNA_4.1	C_unshiu_02252	7997	9032	Photosystem II reaction center W protein	AGI-08	56.724
Gn0058			-	-	-	-	-	-		Ciclev10029531m	scaffold_8	11297754	11299510	C_unshiu_00424:mRNA_23.1	C_unshiu_00424	213541	217268	Hypothetical protein	AGI-08	59.107
Mf0024	Mf0023.2		-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348
Cp0703			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin	AGI-08	43.089
Al0018			-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348	C_unshiu_01460:mRNA_6.1	C_unshiu_01460	35683	36517	Ferredoxin									RP-08	23.447
Af1290			-	-	-	-	-	-		Ciclev10029472m	scaffold_8	24413157	24415621
Af1305			-	-	-	-	-	-		Ciclev10029439m	scaffold_8	19760077	19761961
Al0411		AAvailable marker	O	-	-	-	O	O		Ciclev10029439m	scaffold_8	19760077	19761961	C_unshiu_00011:mRNA_19.2	C_unshiu_00011	188649	189649	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-08	40.857
Ov0314		AAvailable marker	O	-	-	-	O	O	SI107	Ciclev10029386m	scaffold_8	8176371	8177435	C_unshiu_00728:mRNA_1.1	C_unshiu_00728	4070	4922	Mannan polymerase complex subunit mnn9	AGI-08	56.724	KmG-08	58.356	JtR-08	21.829			RP-08	41.217
Af1169b			-	-	-	-	-	-		Ciclev10029381m	scaffold_8	22375153	22376849
Af1518			-	-	-	-	-	-		Ciclev10029379m	scaffold_8	21919215	21923184
Lp0228			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Af1118			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Af0017			-	-	-	-	-	-		Ciclev10029358m	scaffold_8	313112	317158
Lp0127			-	-	-	-	-	-		Ciclev10029357m	scaffold_8	21374019	21379609
Tf0325		OOthers	O	-	-	-	-	-		Ciclev10029355m	scaffold_8	6700441	6703748	C_unshiu_02974:mRNA_2.1	C_unshiu_02974	10142	13418	B-box type zinc finger family protein	AGI-08	57.386
Wy0019			-	-	-	-	-	-	SI031	Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2
Tf0290		AAvailable marker	O	-	-	-	O	O		Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2	AGI-08	57.802
Cp0696			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Af1200			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Tf0440			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Af1454			-	-	-	-	-	-		Ciclev10029330m	scaffold_8	18813106	18814838
Tf0295			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782
Edw002			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782	C_unshiu_00024:mRNA_48.2	C_unshiu_00024	335678	337129	LIM transcription factor	AGI-08	77.720
Al0324		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029315m	scaffold_8	20424287	20425903	C_unshiu_00320:mRNA_1.2	C_unshiu_00320	12758	14314	Hypothetical protein	AGI-08	41.127					NAT-082	31.019	RP-08	17.081
Al0303			-	-	-	-	-	-		Ciclev10029291m	scaffold_8	24431064	24433341
Af1352			-	-	-	-	-	-		Ciclev10029282m	scaffold_8	11113259	11117344
Al0247		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10029281m	scaffold_8	2227827	2230752	C_unshiu_00024:mRNA_15.1	C_unshiu_00024	104182	106823	Somatic embryogenesis receptor kinase 1	AGI-08	77.316	KmG-08	91.101			NAT-082	73.850
Tf0445			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0355			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Af1650			-	-	-	-	-	-		Ciclev10029248m	scaffold_8	19272551	19276355
Bf0219			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Cp0739			-	-	-	-	-	-		Ciclev10029243m	scaffold_8	24851462	24854925
Af1140			-	-	-	-	-	-		Ciclev10029224m	scaffold_8	1336907	1339200
Af1258			-	-	-	-	-	-		Ciclev10029223m	scaffold_8	24591409	24594117
Af1555			-	-	-	-	-	-		Ciclev10029189m	scaffold_8	24502070	24504031
Tf0442			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0312			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Cp2198			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Af1416			-	-	-	-	-	-		Ciclev10029140m	scaffold_8	3738607	3741747	C_unshiu_00589:mRNA_10.1	C_unshiu_00589	131180	134227	Embryo defective 1273, putative isoform 1	AGI-08	68.834
Af1208			-	-	-	-	-	-		Ciclev10029134m	scaffold_8	23036291	23037524	C_unshiu_02220:mRNA_1.1	C_unshiu_02220	11982	13216	Tonoplast intrinsic protein	AGI-08	17.057
Cp0705			-	-	-	-	-	-		Ciclev10029127m	scaffold_8	20079720	20084101
Cp0103			-	-	-	-	-	-		Ciclev10029116m	scaffold_8	16045535	16047020
Ov0424			-	-	-	-	-	-		Ciclev10029115m	scaffold_8	23480483	23484398
Al0012			-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Al0013	Al0012.2		-	-	-	-	-	-		Ciclev10029110m	scaffold_8	5324792	5326835
Cp0605			-	-	-	-	-	-		Ciclev10029105m	scaffold_8	2627683	2630058
Af1491b			-	-	-	-	-	-		Ciclev10029091m	scaffold_8	21777981	21780912
Af1154			-	-	-	-	-	-		Ciclev10029070m	scaffold_8	24143988	24146294
Gn0086.9		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10029066m	scaffold_8	6317205	6322458
Bf0115			O	-	-	-	-	-	SI054,SI295	Ciclev10029066m	scaffold_8	6317205	6322458	C_unshiu_00484:mRNA_11.3	C_unshiu_00484	48216	54250	Squalene synthase	AGI-08	58.587					NAT-081	17.717
Tf0356			-	-	-	-	-	-	SI134,SI160	Ciclev10029063m	scaffold_8	998289	1001763	C_unshiu_00041:mRNA_95.3	C_unshiu_00041	588335	591780	Basic-leucine zipper (BZIP) transcription factor family	AGI-08	83.743
Ov0520		OOthers	O	-	-	-	-	-		Ciclev10029053m	scaffold_8	4712393	4713689	C_unshiu_00438:mRNA_3.1	C_unshiu_00438	34343	35619	BURP domain-containing protein	AGI-08	33.144			JtR-08	26.748
Af1402			-	-	-	-	-	-		Ciclev10029042m	scaffold_8	7891925	7895996
Tf0129			-	-	-	-	-	-		Ciclev10029032m	scaffold_8	19288177	19290093
Tf0444			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797
Tf0336			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797	C_unshiu_02599:mRNA_1.1	C_unshiu_02599	10362	14310	NAD(P)-linked oxidoreductase superfamily protein	AGI-08	54.304
Cp0603		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10028998m	scaffold_8	2349655	2354496	C_unshiu_00363:mRNA_34.1	C_unshiu_00363	217631	222409	Hop-interacting protein THI043	AGI-08	75.684
Cp2188		AAvailable marker	-	-	-	-	O	O		Ciclev10028997m	scaffold_8	24666729	24669708	C_unshiu_00021:mRNA_116.1	C_unshiu_00021	778469	782836	Phytol kinase	AGI-08	2.186
Cp0297			-	-	-	-	-	-		Ciclev10028989m	scaffold_8	2135445	2138606	C_unshiu_00024:mRNA_26.2	C_unshiu_00024	197656	201866	ATP-dependent Clp protease, proteolytic subunit ClpP	AGI-08	78.209
Af1686			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Al0035			-	-	-	-	-	-		Ciclev10028970m	scaffold_8	2392763	2395622
Wy0039		AAvailable marker	-	-	-	-	O	O		Ciclev10028965m	scaffold_8	18824262	18825514	C_unshiu_00459:mRNA_4.1	C_unshiu_00459	34475	34918	Hypothetical protein	AGI-08	45.276			JtR-08	16.276
Fb1784			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936	C_unshiu_02466:mRNA_2.1	C_unshiu_02466	2597	4055	Class I chitinase									RP-05	52.311
Ov0108			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936
Tf0308			-	-	-	-	-	-		Ciclev10028926m	scaffold_8	1993659	1996827
Tf0229			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0408			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Af1117			-	-	-	-	-	-		Ciclev10028909m	scaffold_8	12563102	12564623
Tf0047			-	-	-	-	-	-		Ciclev10028908m	scaffold_8	1063711	1065289
Af1156			-	-	-	-	-	-		Ciclev10028887m	scaffold_8	6901630	6904625
Lp0116		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028879m	scaffold_8	19397294	19398741	C_unshiu_02034:mRNA_3.1	C_unshiu_02034	7573	8901	DUF3049 family protein					JtR-08	18.207	NAT-05	47.659
Tf0155			-	-	-	-	-	-		Ciclev10028860m	scaffold_8	6474195	6475882
Tf0250		AAvailable marker	O	-	-	-	O	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A	AGI-08	73.105
Tf0431		AAvailable marker	O	-	-	-	-	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A
Af1113			-	-	-	-	-	-		Ciclev10028842m	scaffold_8	1376123	1378446
Af1588			-	-	-	-	-	-		Ciclev10028841m	scaffold_8	6750503	6754741
Mf0079		AAvailable marker	O	-	-	-	O	O	SI067	Ciclev10028839m	scaffold_8	24721937	24724569	C_unshiu_00984:mRNA_8.1	C_unshiu_00984	55676	58212	Cinnamoyl CoA reductase	AGI-08	3.409	KmG-08				NAT-082
Af1373			-	-	-	-	-	-		Ciclev10028814m	scaffold_8	1400755	1404988
Tf0096			O	-	-	-	-	-		Ciclev10028804m	scaffold_8	21369373	21370728	C_unshiu_00784:mRNA_1.1	C_unshiu_00784	297	1652	Transcription factor RAX3	AGI-08	34.042
Lg2004			-	-	-	-	-	-		Ciclev10028785m	scaffold_8	2599717	2602090	C_unshiu_00152:mRNA_53.1	C_unshiu_00152	347645	349890	Cinnamyl alcohol dehydrogenase	AGI-08	76.045
Tf0144			-	-	-	-	-	-	SI125,SI189,SI192	Ciclev10028782m	scaffold_8	8009000	8012045	C_unshiu_00682:mRNA_12.1	C_unshiu_00682	86334	89311	Transcription factor bHLH121	AGI-08	56.439
Lp0115			-	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065
Al0632		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10028775m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like	AGI-08	56.724			JtR-08	18.952
Tf0316			-	-	-	-	-	-		Ciclev10028732m	scaffold_8	3894266	3897671
Al0205			-	-	-	-	-	-		Ciclev10028714m	scaffold_8	324145	327011
Al0610			-	-	-	-	-	-		Ciclev10028696m	scaffold_8	23885103	23890220
Cp2190		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10028681m	scaffold_8	24416582	24418982	C_unshiu_00021:mRNA_82.1	C_unshiu_00021	526890	529253	Kinase PfkB	AGI-08	13.780
Af1098			-	-	-	-	-	-		Ciclev10028668m	scaffold_8	356241	360220
Al0315			-	-	-	-	-	-		Ciclev10028656m	scaffold_8	4905341	4909930
Cp1697		AAvailable marker	-	-	-	-	O	O		Ciclev10028645m	scaffold_8	966124	968846	C_unshiu_00041:mRNA_89.1	C_unshiu_00041	555334	558046	Urease accessory protein UreH	AGI-02	73.770
Al0256			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Af1501			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Lp0018			-	-	-	-	-	-		Ciclev10028637m	scaffold_8	19538138	19541255
Lp0119		AAvailable marker	-	-	-	-	O	O	SI276	Ciclev10028631m	scaffold_8	24315720	24317671	C_unshiu_00021:mRNA_65.1	C_unshiu_00021	426040	431920	Hypothetical protein	AGI-08	8.544
Lp0016			-	-	-	-	-	-		Ciclev10028621m	scaffold_8	20607774	20611605
Af1110			-	-	-	-	-	-		Ciclev10028599m	scaffold_8	9656865	9660001	C_unshiu_01425:mRNA_1.1	C_unshiu_01425	333	5522	N-carbamoylputrescine amidase	AGI-08	56.690
Af1089			-	-	-	-	-	-		Ciclev10028589m	scaffold_8	6068944	6075685
Cp0451			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806
Bf0019			-	-	-	-	-	-		Ciclev10028586m	scaffold_8	232123	235806	C_unshiu_00376:mRNA_8.1	C_unshiu_00376	72474	76027	Putative serine/threonine-protein kinase Cx32									RP-04
Af1425			-	-	-	-	-	-		Ciclev10028562m	scaffold_8	994687	998018
Tf0223			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0399			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0429			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0299			-	-	-	-	-	-		Ciclev10028534m	scaffold_8	1316879	1320611
Af1487			-	-	-	-	-	-		Ciclev10028531m	scaffold_8	18155481	18157658	C_unshiu_00251:mRNA_22.1	C_unshiu_00251	205180	207288	DnaJ	AGI-08	47.330
Al0240		AAvailable marker	-	-	-	-	O	O		Ciclev10028497m	scaffold_8	8033465	8038415	C_unshiu_00682:mRNA_9.1	C_unshiu_00682	59786	63447	Hypothetical protein	AGI-08	53.867
Tf0346			-	-	-	-	-	-		Ciclev10028485m	scaffold_8	24987539	24993295
Al0248			-	-	-	-	-	-		Ciclev10028483m	scaffold_8	19779795	19784134
Wy0015			O	-	-	-	-	-	SI041	Ciclev10028465m	scaffold_8	13101257	13103161	C_unshiu_02878:mRNA_1.1	C_unshiu_02878	9199	10715	UDP-glycosyltransferase 73C5	AGI-08	56.724
Lp0201			-	-	-	-	-	-		Ciclev10028459m	scaffold_8	23365481	23369843
Cp2194			-	-	-	-	-	-		Ciclev10028458m	scaffold_8	23768052	23771625
Al0416		OOthers	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00639:mRNA_12.1	C_unshiu_00639	90698	99467	Elongation factor 1-alpha	AGI-08	23.023			JtR-07	60.405	NAT-082	21.126
Ov0018		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00082:mRNA_34.1	C_unshiu_00082	267163	269630	Elongation factor 1-alpha
Af1468			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019
Cp0719			-	-	-	-	-	-		Ciclev10028417m	scaffold_8	23257043	23262019	C_unshiu_02393:mRNA_2.1	C_unshiu_02393	18637	23537	Inner membrane protein ALBINO3	AGI-08	12.793
Cp1694			-	-	-	-	-	-		Ciclev10028384m	scaffold_8	4292180	4295696
Af1697			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Cp0601			-	-	-	-	-	-		Ciclev10028382m	scaffold_8	1424551	1429767
Af1423			-	-	-	-	-	-		Ciclev10028376m	scaffold_8	24832653	24835113
Gn0049			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311	C_unshiu_00024:mRNA_95.1	C_unshiu_00024	699386	701126	DUF1005 family protein	AGI-08	77.688			JtR-08	17.757
Cp0301			-	-	-	-	-	-		Ciclev10028366m	scaffold_8	1604460	1606311
Ks9014			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
Cp0709			-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410
Ov0121		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase							NAT-081
Ov0125		AAvailable marker	-	-	-	-	O	O		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase	AGI-08	41.398
Af1409			-	-	-	-	-	-		Ciclev10028349m	scaffold_8	1878986	1885505
Al0021			-	-	-	-	-	-		Ciclev10028327m	scaffold_8	5692075	5697304
Ov0413			-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like			KmG-07	34.263
Ov0414	Ov0413.2		-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065
Bf0411		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028317m	scaffold_8	21869065	21874083	C_unshiu_00500:mRNA_13.1	C_unshiu_00500	128482	133656	Sulfotransferase
Cp2237		AAvailable marker	-	-	-	-	O	O		Ciclev10028314m	scaffold_8	13190041	13194829	C_unshiu_01736:mRNA_2.1	C_unshiu_01736	18986	23543	Riboflavin biosynthesis protein ribBA, chloroplastic	AGI-08	55.965
Wy0038			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Ov0025			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Tf0412			-	-	-	-	-	-		Ciclev10028306m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Al0517		AAvailable marker	-	-	-	-	O	O		Ciclev10028293m	scaffold_8	2572439	2574295	C_unshiu_00363:mRNA_1.1	C_unshiu_00363	5892	7583	Limonoid glucosyltransferase	AGI-08	74.016			JtR-08	15.435
Tf0150		AAvailable marker	O	O	-	O	O	O	SI262	Ciclev10028292m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Bf0179			-	-	-	-	-	-		Ciclev10028278m	scaffold_8	9383280	9385123
Af1275			-	-	-	-	-	-		Ciclev10028274m	scaffold_8	13035174	13037307
Wy0042	Wy0042.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326
Wy0045	Wy0045.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326	C_unshiu_02764:mRNA_1.1	C_unshiu_02764	1529	2654	Geraniol 10-hydroxylase-like protein	AGI-08	56.724
Al0308			-	-	-	-	-	-	SI045	Ciclev10028262m	scaffold_8	24521116	24524868	C_unshiu_00021:mRNA_97.1	C_unshiu_00021	630527	634212	NAD(P)H dehydrogenase B2	AGI-05	56.788
Al0252			-	-	-	-	-	-		Ciclev10028251m	scaffold_8	24689989	24692884
Gn0033		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605	C_unshiu_00363:mRNA_2.1	C_unshiu_00363	14663	16198	Limonoid UDP-glucosyltransferase-like protein	AGI-08	73.527	KmG-08	86.664			NAT-082	86.620
Gn0033.2			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Gn0033.3			-	-	-	-	-	-		Ciclev10028247m	scaffold_8	2561845	2563605
Gn0060.2		OOthers	O	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508
Gn0100			-	-	-	-	-	-		Ciclev10028245m	scaffold_8	19259623	19261508	C_unshiu_00814:mRNA_2.1	C_unshiu_00814	13987	15768	Putative lycopene beta cyclase	AGI-08	44.669
Af1193			-	-	-	-	-	-		Ciclev10028241m	scaffold_8	23456630	23459052
Fb0159		AAvailable marker	O	-	-	-	O	O	SI227	Ciclev10028241m	scaffold_8	23456630	23459052	C_unshiu_00375:mRNA_4.1	C_unshiu_00375	27952	30443	O-Glycosyl hydrolases family 17 protein	AGI-08	13.499	KmG-08	9.978					RP-08	2.327
Al0219			-	-	-	-	-	-		Ciclev10028236m	scaffold_8	793820	798369
Lp0042			-	-	-	-	-	-		Ciclev10028234m	scaffold_8	21342050	21345004
Cp0655			-	-	-	-	-	-		Ciclev10028195m	scaffold_8	5496424	5502056
Bf0180			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Cp1254			-	-	-	-	-	-		Ciclev10028147m	scaffold_8	21112804	21117215
Af1469			-	-	-	-	-	-		Ciclev10028130m	scaffold_8	20779069	20782853
Af1191			-	-	-	-	-	-		Ciclev10028098m	scaffold_8	180851	185769
Cp1144		OOthers	-	-	-	-	-	-		Ciclev10028086m	scaffold_8	2649991	2655756	C_unshiu_00152:mRNA_43.1	C_unshiu_00152	288550	294174	Sodium:hydrogen antiporter 1 isoform 1	AGI-08	70.995
Cp0113			-	-	-	-	-	-		Ciclev10028057m	scaffold_8	25022548	25027972
Lg2001			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562
Lg2002			-	-	-	-	-	-		Ciclev10028055m	scaffold_8	2646458	2649562	C_unshiu_00152:mRNA_44.1	C_unshiu_00152	294607	297615	Phosphoglycerate dehydrogenase	AGI-08	69.974
Af1023			-	-	-	-	-	-		Ciclev10028042m	scaffold_8	2719654	2725331
Cp0822			-	-	-	-	-	-		Ciclev10028025m	scaffold_8	22475922	22481806
Ov0008			-	-	-	-	-	-		Ciclev10028019m	scaffold_8	17659925	17664551
Af1386			-	-	-	-	-	-		Ciclev10028011m	scaffold_8	3117337	3120914
Lp0226			O	-	-	-	-	-	SI210	Ciclev10027999m	scaffold_8	2831832	2837109	C_unshiu_00152:mRNA_19.1	C_unshiu_00152	138714	144356	Embryonic polyadenylate-binding protein	AGI-08	73.527
Af1261			-	-	-	-	-	-		Ciclev10027978m	scaffold_8	20321003	20329872
Tf0228			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497
Tf0405			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497	C_unshiu_00220:mRNA_2.1	C_unshiu_00220	48148	53214	BEL1-like homeodomain protein 6	AGI-08	61.643
Lp0031			-	-	-	-	-	-		Ciclev10027944m	scaffold_8	22261408	22266208	C_unshiu_00639:mRNA_5.1	C_unshiu_00639	45321	49901	N-terminal isoform 1	AGI-08	9.183
If0012			-	-	-	-	-	-		Ciclev10027933m	scaffold_8	23574080	23579813
Af1362			-	-	-	-	-	-		Ciclev10027931m	scaffold_8	2888992	2895645	C_unshiu_00152:mRNA_9.1	C_unshiu_00152	72564	86513	Hypothetical protein	AGI-08	80.366
Ov0524			-	-	-	-	-	-		Ciclev10027930m	scaffold_8	24613597	24623540
Tf0345			-	-	-	-	-	-	SI011	Ciclev10027918m	scaffold_8	22248129	22254029	C_unshiu_00639:mRNA_3.1	C_unshiu_00639	31842	37665	Auxin response factor
Bf0145			O	-	-	O	-	-	SI272,SI327,SI368	Ciclev10027909m	scaffold_8	22730839	22737522	C_unshiu_00158:mRNA_13.1	C_unshiu_00158	102548	109253	Pseudo-response regulator 37	AGI-08	20.703							RP-08	5.775
Tf0029			-	-	-	-	-	-		Ciclev10027901m	scaffold_8	21887372	21893128	C_unshiu_00500:mRNA_16.1	C_unshiu_00500	147319	151840	Auxin response factor	AGI-08	27.318
Af1572			-	-	-	-	-	-		Ciclev10027884m	scaffold_8	22084232	22091205
Fb0321		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10027873m	scaffold_8	6834487	6837762	C_unshiu_00918:mRNA_1.1	C_unshiu_00918	5010	7626	Arginine decarboxylase 1	AGI-08	56.405			JtR-08	25.280
Af1225			-	-	-	-	-	-		Ciclev10027859m	scaffold_8	1094366	1097096
Tf0204			-	-	-	-	-	-		Ciclev10027848m	scaffold_8	23589702	23593390
Fb0202			O	-	-	-	-	-		Ciclev10027835m	scaffold_8	23736197	23740543
Af1252			-	-	-	-	-	-		Ciclev10027813m	scaffold_8	24202384	24209439
Tf0241		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10027798m	scaffold_8	22106872	22114471	C_unshiu_00481:mRNA_18.1	C_unshiu_00481	121975	128680	Zinc finger CCCH domain-containing protein 24	AGI-08	27.618
Gn0043		MDisagree by Marco analysis	-	-	-	O	-	-	SI323	Ciclev10027790m	scaffold_8	21953129	21960709	C_unshiu_02574:mRNA_1.1	C_unshiu_02574		2470	Class III homeodomain leucine zipper protein	AGI-08	30.721	KmG-08	27.458
Tf0013		OOthers	O	O	O	-	O	O	SI161,SI362	Ciclev10027769m	scaffold_8	13408610	13413938	C_unshiu_01226:mRNA_1.1	C_unshiu_01226	20559	25720	DNA replication licensing factor MCM2	AGI-08	56.123
Af1515			-	-	-	-	-	-		Ciclev10027760m	scaffold_8	20838053	20844872	C_unshiu_00883:mRNA_4.1	C_unshiu_00883	60978	104832	Argonaute 1	AGI-08	40.438
Lp0128			-	-	-	-	-	-		Ciclev10027734m	scaffold_8	2848884	2853210
Vt0003			-	-	-	-	-	-		Ciclev10027667m	scaffold_8	8153660	8174407	C_unshiu_00616:mRNA_3.1	C_unshiu_00616	10808	18470	Hypothetical protein	AGI-08	56.724
Cp0066			O	-	-	-	-	-		Ciclev10027599m	scaffold_7	5801208	5803835
Cp0114			-	-	-	-	-	-		Ciclev10027515m	scaffold_7	15446269	15449214	C_unshiu_01960:mRNA_1.1	C_unshiu_01960	1400	4642	DS12 from 2D-PAGE of leaf protein, putative	AGI-02	21.337
Cp1791		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10027428m	scaffold_7	11604464	11607028	C_unshiu_00582:mRNA_4.1	C_unshiu_00582	10067	11470	NBS-LRR type disease resistance protein	AGI-02	12.969
Al0638		OOthers	O	-	-	-	-	-		Ciclev10027380m	scaffold_7	8662041	8665543	C_unshiu_00221:mRNA_2.1	C_unshiu_00221	6658	10157	VHS domain-containing protein			KmG-07	23.435	JtR-07	17.224	NAT-07	24.049
Tf0454		AAvailable marker	O	-	-	-	O	O		Ciclev10027306m	scaffold_7	16108723	16113463	C_unshiu_00371:mRNA_10.1	C_unshiu_00371	121418	127245	GATA transcription factor	AGI-02	21.099
Tf0030.2			-	-	-	-	-	-		Ciclev10027306m	scaffold_7	16108723	16113463
Lp0144			-	-	-	-	-	-		Ciclev10027174m	scaffold_7	9452114	9461436
Cp0135			-	-	-	-	-	-		Ciclev10027108m	scaffold_7	923672	926367
Af1030			-	-	-	-	-	-		Ciclev10026876m	scaffold_7	3930788	3932748
Af1472			-	-	-	-	-	-		Ciclev10026852m	scaffold_7	17420861	17422787
Af1210			-	-	-	-	-	-		Ciclev10026807m	scaffold_7	20056475	20058190
Ov0522			-	-	-	-	-	-		Ciclev10026806m	scaffold_7	20056475	20058190
Af0002			-	-	-	-	-	-		Ciclev10026803m	scaffold_7	9468245	9468907
Fb0281			-	-	-	-	-	-		Ciclev10026802m	scaffold_7	13781544	13786811
Af1619			-	-	-	-	-	-		Ciclev10026784m	scaffold_7	1608634	1610659	C_unshiu_00209:mRNA_18.2	C_unshiu_00209	147009	148975	Thioredoxin h	AGI-02	73.759
Af1651			-	-	-	-	-	-		Ciclev10026767m	scaffold_7	7313006	7315653
Af1291			-	-	-	-	-	-		Ciclev10026757m	scaffold_7	4779400	4780310
Al0520			-	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Mf0100			O	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Af1562b			-	-	-	-	-	-		Ciclev10026749m	scaffold_7	1530713	1532413
Af1483			-	-	-	-	-	-		Ciclev10026740m	scaffold_7	5523075	5524475
Al0237			-	-	-	-	-	-		Ciclev10026739m	scaffold_7	5523075	5524475
Af1292			-	-	-	-	-	-		Ciclev10026736m	scaffold_7	6677314	6680214
Cp0321		AAvailable marker	-	-	-	-	-	O		Ciclev10026722m	scaffold_7	8898626	8899984	C_unshiu_00221:mRNA_33.1	C_unshiu_00221	211111	214358	Hypothetical protein
Af1465			-	-	-	-	-	-		Ciclev10026722m	scaffold_7	8898626	8899984
Al0512			-	-	-	-	-	-		Ciclev10026719m	scaffold_7	4280712	4281481
Tf0448			-	-	-	-	-	-		Ciclev10026715m	scaffold_7	252320	254049
Al0525		OOthers	O	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023	C_unshiu_00312:mRNA_20.2	C_unshiu_00312	114652	116351	High mobility group (HMG)-box protein	AGI-01	38.939	KmG-01	41.081
Tf0160			-	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023
Af1100			-	-	-	-	-	-		Ciclev10026703m	scaffold_7	10853487	10855215	C_unshiu_00451:mRNA_17.1	C_unshiu_00451	120744	122474	Ran BP2/NZF zinc finger-like superfamily protein isoform 1	AGI-02	13.326
Af1585			-	-	-	-	-	-		Ciclev10026687m	scaffold_7	3462353	3463444
Af1601			-	-	-	-	-	-		Ciclev10026686m	scaffold_7	4214423	4217517
Af1012			-	-	-	-	-	-		Ciclev10026672m	scaffold_7	16270394	16272027
Af1556			-	-	-	-	-	-		Ciclev10026643m	scaffold_7	11107041	11109191	C_unshiu_01501:mRNA_6.1	C_unshiu_01501	57291	59154	Lactoylglutathione lyase/glyoxalase I family protein	AGI-02	11.728
Af1620			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Cp2247			-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709
Lp0019		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10026623m	scaffold_7	20922631	20924709	C_unshiu_00622:mRNA_2.1	C_unshiu_00622	28630	30583	50S ribosomal protein L29, chloroplastic			KmG-02	4.377	JtR-02	-6.938
Af1264			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Cp0058			-	-	-	-	-	-		Ciclev10026609m	scaffold_7	18539347	18543298
Edp001			-	-	-	-	-	-		Ciclev10026603m	scaffold_7	7147319	7149017
Tf0027			-	-	-	-	-	-	SI046	Ciclev10026602m	scaffold_7	13911684	13912447	C_unshiu_00792:mRNA_11.1	C_unshiu_00792	92331	93069	Ethylene-responsive transcription factor ERF003	AGI-07	38.916
Af1573			-	-	-	-	-	-		Ciclev10026597m	scaffold_7	11163359	11165487
Af1544			-	-	-	-	-	-		Ciclev10026596m	scaffold_7	2622969	2624754
Mf0094		AAvailable marker	-	-	-	-	O	O		Ciclev10026594m	scaffold_7	3721375	3722616	C_unshiu_00169:mRNA_29.1	C_unshiu_00169	217948	219072	Maternal effect embryo arrest protein	AGI-02	67.666	KmG-02	52.124	JtR-02	25.334
Af1485a			-	-	-	-	-	-		Ciclev10026552m	scaffold_7	1381761	1382875
Lp0024		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI010,SI302	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q	AGI-02	74.555							RP-02.2	17.330
Lp0122		MDisagree by Marco analysis	O	-	-	-	-	-	SI170	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q							NAT-02S	69.942	RP-02.2	17.330
Af1228			-	-	-	-	-	-		Ciclev10026542m	scaffold_7	8317978	8319191
Af1126			-	-	-	-	-	-		Ciclev10026538m	scaffold_7	20656099	20658251
Af1480			-	-	-	-	-	-		Ciclev10026531m	scaffold_7	782313	784526
Fb0279			-	-	-	-	-	-		Ciclev10026511m	scaffold_7	2590903	2593347
Tf0260			-	-	-	-	-	-		Ciclev10026457m	scaffold_7	5173846	5179864
Tf0434			-	-	-	-	-	-		Ciclev10026455m	scaffold_7	5173846	5179562
Af1522			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Tf0002.2			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Lp0002			-	-	-	-	-	-		Ciclev10026427m	scaffold_7	5575623	5577458
Tf0020			-	-	-	-	-	-	SI154	Ciclev10026414m	scaffold_7	2289455	2291216	C_unshiu_00025:mRNA_31.1	C_unshiu_00025	258446	260200	Homeobox leucine zipper protein	AGI-02	71.294
Lp0105		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI113,SI163,SI254	Ciclev10026412m	scaffold_7	815904	817239	C_unshiu_00353:mRNA_13.1	C_unshiu_00353	92033	93437	Hypothetical protein	AGI-02	75.939
Tf0172			O	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176	C_unshiu_00496:mRNA_5.1	C_unshiu_00496	48069	50951	Auxin-induced protein IAA6	AGI-02	10.638
Tf0024.2			-	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176
Fb0365			O	-	-	-	-	-	SI036,SI320	Ciclev10026391m	scaffold_7	20872462	20874659	C_unshiu_00098:mRNA_41.1	C_unshiu_00098	264947	272086	Hypothetical protein	AGI-02	31.596	KmG-02		JtR-02	-4.953
Tf0238			-	-	-	-	-	-	SI114	Ciclev10026387m	scaffold_7	551893	553909	C_unshiu_01559:mRNA_5.1	C_unshiu_01559	24035	34006	Receptor-like protein kinase THESEUS 1
Cp1688			-	-	-	-	-	-		Ciclev10026380m	scaffold_7	3456105	3460607
Af1532			-	-	-	-	-	-		Ciclev10026374m	scaffold_7	3988366	3989679
Al0239		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative
Af3023			-	-	-	-	-	-		Ciclev10026364m	scaffold_7	16185818	16187223	C_unshiu_00371:mRNA_7.1	C_unshiu_00371	54653	56423	B-box type zinc finger protein, putative	AGI-02	21.337
Af1379			-	-	-	-	-	-		Ciclev10026357m	scaffold_7	3456105	3460607	C_unshiu_00301:mRNA_21.2	C_unshiu_00301	134429	138770	CBS domain-containing protein CBSX1, chloroplastic	AGI-02	68.467
Af1514			-	-	-	-	-	-		Ciclev10026347m	scaffold_7	11203967	11205525
Lp0108		AAvailable marker	-	-	-	-	-	O		Ciclev10026340m	scaffold_7	5554619	5556993	C_unshiu_00761:mRNA_5.1	C_unshiu_00761	18704	21072	40S ribosomal protein S6			KmG-02	41.508	JtR-02	18.351
Af1584			-	-	-	-	-	-		Ciclev10026332m	scaffold_7	17424218	17426071
Tf0319			-	-	-	-	-	-	SI152	Ciclev10026319m	scaffold_7	6872666	6877291	C_unshiu_00166:mRNA_10.1	C_unshiu_00166	78780	83374	Putative PHD finger protein ALFIN-LIKE 4-like	AGI-02	44.258
Wy0034			-	-	-	-	-	-	SI367	Ciclev10026310m	scaffold_7	2299638	2302863	C_unshiu_00025:mRNA_32.1	C_unshiu_00025	269762	270443	Flavoprotein wrbA
If0010		AAvailable marker	O	-	-	-	O	-		Ciclev10026308m	scaffold_7	1264965	1266960	C_unshiu_00218:mRNA_11.1	C_unshiu_00218	63403	65018	60S ribosomal protein L8	AGI-02	73.759	KmG-02	76.687	JtR-02	10.849	NAT-02S	71.041
Cp1716		AAvailable marker	-	-	-	-	O	O		Ciclev10026303m	scaffold_7	2607670	2609433	C_unshiu_00025:mRNA_77.1	C_unshiu_00025	553145	554831	Thiol disulfide interchange protein	AGI-02	70.068
Af1435			-	-	-	-	-	-		Ciclev10026292m	scaffold_7	5747604	5748976
Bf0406			-	-	-	-	-	-		Ciclev10026290m	scaffold_7	15773091	15776242
Tf0231			-	-	-	-	-	-		Ciclev10026262m	scaffold_7	6760311	6763833
Al0037			-	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Al0037.2	Al0037.k		O	-	-	-	-	-		Ciclev10026259m	scaffold_7	14310100	14311942	C_unshiu_02045:mRNA_3.1	C_unshiu_02045	17414	19393	CCR4-NOT transcription complex subunit 7	AGI-02	15.816
Af1235			-	-	-	-	-	-		Ciclev10026233m	scaffold_7	17212895	17215557
Af1194			-	-	-	-	-	-		Ciclev10026223m	scaffold_7	8255046	8256442
Ov0015		OOthers	O	-	-	-	-	-	SI304	Ciclev10026223m	scaffold_7	8255046	8256442	C_unshiu_02827:mRNA_2.1	C_unshiu_02827	15986	17224	Stem 28 kDa glycoprotein	AGI-02	34.494	KmG-02	35.126	JtR-02	19.319
Ov0306		OOthers	-	-	-	-	-	-	SI382	Ciclev10026199m	scaffold_7	224443	227133	No					AGI-02	79.663	KmG-02	72.516	JtR-02	8.671	NAT-02S	60.000
Tf0362			-	-	-	-	-	-	SI062	Ciclev10026199m	scaffold_7	224443	227133	C_unshiu_02579:mRNA_3.1	C_unshiu_02579	13228	15002	WUSCHEL-related homeobox 13
Tf0139			-	-	-	-	-	-		Ciclev10026199m	scaffold_7	224443	227133
Tf0025.2			-	-	-	-	-	-		Ciclev10026197m	scaffold_7	4513037	4514995
Al0232			-	-	-	-	-	-		Ciclev10026186m	scaffold_7	4997089	4999255
Cp1736			-	-	-	-	-	-		Ciclev10026179m	scaffold_7	5640058	5643125	C_unshiu_00761:mRNA_15.2	C_unshiu_00761	89991	92755	Protein CbbY	AGI-02	50.716
Vs0018			-	-	-	-	-	-		Ciclev10026149m	scaffold_7	4612887	4617115
Lp0004		OOthers	-	-	-	-	-	-		Ciclev10026144m	scaffold_7	15376818	15378771	C_unshiu_00703:mRNA_1.1	C_unshiu_00703	2793	4693	C6HC-type zinc finger RING/U-box protein	AGI-02	20.292	KmG-02	15.368					RP-02	11.119
Al0212			O	-	-	-	-	-		Ciclev10026128m	scaffold_7	5258045	5259521	C_unshiu_00288:mRNA_19.1	C_unshiu_00288	142758	144183	Mitochondrial uncoupling protein 3			KmG-02	43.821	JtR-02	30.507			RP-08
Cp2262		AAvailable marker	-	-	-	-	-	O		Ciclev10026121m	scaffold_7	1870933	1874304	C_unshiu_00289:mRNA_20.1	C_unshiu_00289	113542	116894	Galactose mutarotase-like superfamily protein
Al0410			-	-	-	-	-	-		Ciclev10026113m	scaffold_7	7739782	7742295
Lp0040		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor			KmG-02	52.181	JtR-02	25.334
Tf0259		AAvailable marker	O	-	-	-	O	O		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-02	67.666
Af1325			-	-	-	-	-	-		Ciclev10026096m	scaffold_7	6287460	6289468
Af1043			-	-	-	-	-	-		Ciclev10026060m	scaffold_7	20049936	20052008	C_unshiu_00519:mRNA_19.1	C_unshiu_00519	110187	111261	Ribonucleoside-diphosphate reductase subunit M2	AGI-02	44.231
Af1230			-	-	-	-	-	-		Ciclev10026057m	scaffold_7	370952	372493
Tf0132			-	-	-	-	-	-		Ciclev10026056m	scaffold_7	3429964	3433239
Tf0046.2			-	-	-	-	-	-		Ciclev10026046m	scaffold_7	13308593	13311348
Cp2263		AAvailable marker	-	-	-	-	O	O		Ciclev10026034m	scaffold_7	2586384	2588513	C_unshiu_00025:mRNA_69.1	C_unshiu_00025	530588	532071	Hypothetical protein	AGI-02	70.082
Gn0004			-	-	-	-	-	-		Ciclev10026028m	scaffold_7	6011523	6014015	C_unshiu_00696:mRNA_14.1	C_unshiu_00696	122646	125456	Flavonol synthase	AGI-02	49.699	KmG-02	38.471	JtR-02	15.126
Tf0032		AAvailable marker	O	-	-	-	O	O		Ciclev10026014m	scaffold_7	94155	97631	C_unshiu_00706:mRNA_8.1	C_unshiu_00706	51525	54837	AT-hook motif nuclear-localized protein 10	AGI-02	78.531
Fb0227			-	-	-	-	-	-		Ciclev10026002m	scaffold_7	2938059	2940407	C_unshiu_00084:mRNA_42.1	C_unshiu_00084	428180	435326	Phospholipase, patatin family	AGI-02	70.082							RP-02.2	12.696
Tf0221			-	-	-	-	-	-	SI057,SI225	Ciclev10025996m	scaffold_7	490750	492882	C_unshiu_00488:mRNA_7.1	C_unshiu_00488	44813	48259	Ankyrin repeat domain-containing protein, chloroplastic	AGI-02	81.212
Tf0398			-	-	-	-	-	-		Ciclev10025996m	scaffold_7	490750	492882
Af1460			-	-	-	-	-	-		Ciclev10025995m	scaffold_7	8712253	8715371
Tf0201			O	-	-	-	-	-	SI195	Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1
Gmom23			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1			KmG-02	20.942
Gmom24			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1	AGI-02	19.971
Cp0313			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0379			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0126			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0415			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0269			-	-	-	-	-	-		Ciclev10025970m	scaffold_7	2274068	2279911
Vt0015			-	-	-	-	-	-		Ciclev10025952m	scaffold_7	2441452	2443391	C_unshiu_00025:mRNA_49.1	C_unshiu_00025	381829	383760	Hexosyltransferase	AGI-02	70.082	KmG-02	67.054	JtR-02	21.082
Tf0067		OOthers	O	-	-	-	-	-	SI033,SI187	Ciclev10025950m	scaffold_7	8438702	8442381	C_unshiu_00290:mRNA_9.1	C_unshiu_00290	74194	77624	Transcription factor	AGI-02	5.104
Cp1738		AAvailable marker	-	-	-	-	-	O	SI237,SI296	Ciclev10025941m	scaffold_7	5388458	5389981	C_unshiu_00303:mRNA_12.1	C_unshiu_00303	100918	102276	Putative clathrin assembly protein
Cp1085			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658	C_unshiu_00025:mRNA_42.1	C_unshiu_00025	337060	338142	Putative geranylgeranyl pyrophosphate synthase 3-like	AGI-02	70.082
Cp1086			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Af1463			-	-	-	-	-	-		Ciclev10025935m	scaffold_7	2390010	2391658
Vs0007			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Gn0003			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Af0011			-	-	-	-	-	-		Ciclev10025929m	scaffold_7	11357990	11362560
Bf0205			O	-	-	-	-	-	SI236	Ciclev10025925m	scaffold_7	3541924	3543863	C_unshiu_00301:mRNA_11.1	C_unshiu_00301	55570	57462	WRKY
Tf0116			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0427			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Wy0041			-	-	-	-	-	-		Ciclev10025903m	scaffold_7	1295839	1297378	C_unshiu_00218:mRNA_18.1	C_unshiu_00218	93074	94183	GDP-mannose 4,6 dehydratase 2	AGI-02	75.406
Al0404			-	-	-	-	-	-		Ciclev10025902m	scaffold_7	4015735	4020920
Af1233			-	-	-	-	-	-		Ciclev10025897m	scaffold_7	20841942	20846077
Al0621		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10025875m	scaffold_7	4575503	4577125	C_unshiu_00656:mRNA_8.1	C_unshiu_00656	32940	34329	Hypothetical protein	AGI-02	60.566	KmG-02	47.196	JtR-02	28.472
Al0329		AAvailable marker	O	-	-	-	O	O	SI185	Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.162	KmG-02	11.218	JtR-02	7.174	NAT-02S	5.552	RP-02	8.191
Mf0090		AAvailable marker	-	O	-	-	O	O		Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.869	KmG-02	11.182	JtR-02	3.182			RP-02	8.191
Af1694			-	-	-	-	-	-		Ciclev10025863m	scaffold_7	2703580	2705194
Af1016			-	-	-	-	-	-		Ciclev10025840m	scaffold_7	2394471	2397293
Wy0023			-	-	-	-	-	-	SI037	Ciclev10025834m	scaffold_7	70855	73880	C_unshiu_00706:mRNA_12.1	C_unshiu_00706	76103	78923	Thioredoxin-disulfide reductase
Cp1163			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Cp0318			-	-	-	-	-	-		Ciclev10025825m	scaffold_7	16201971	16207283
Cp2261			-	-	-	-	-	-		Ciclev10025819m	scaffold_7	1805676	1808859
Al0620		OOthers	-	-	-	-	-	-		Ciclev10025816m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein			KmG-02	36.964	JtR-02	17.013
Tf0196			-	-	-	-	-	-		Ciclev10025815m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein	AGI-02	4.033
Af1301			-	-	-	-	-	-		Ciclev10025759m	scaffold_7	866845	870030
Af1524			-	-	-	-	-	-		Ciclev10025757m	scaffold_7	9325319	9327565
Af1308			-	-	-	-	-	-		Ciclev10025747m	scaffold_7	13625504	13630800
Af1516			-	-	-	-	-	-		Ciclev10025736m	scaffold_7	15872236	15875783
Cp1723			-	-	-	-	-	-		Ciclev10025728m	scaffold_7	5035429	5038431
Ks9007			-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382
Al0210		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10025724m	scaffold_7	6747139	6750382	C_unshiu_00166:mRNA_28.1	C_unshiu_00166	205256	208771	Eukaryotic initiation factor 4A-10			KmG-02	34.998	JtR-02	15.126
Af3016			-	-	-	-	-	-		Ciclev10025718m	scaffold_7	7346031	7350895
Af1031			O	-	-	-	-	-		Ciclev10025711m	scaffold_7	718488	722516	C_unshiu_00353:mRNA_22.1	C_unshiu_00353	151145	154679	3-dehydroquinate synthase AroB	AGI-02	76.168
Gn0101			-	-	-	-	-	-		Ciclev10025706m	scaffold_7	662802	667420	C_unshiu_00353:mRNA_30.1	C_unshiu_00353	203269	207136	Protein MID1-COMPLEMENTING ACTIVITY 1	AGI-02	77.881
Cp1225			-	-	-	-	-	-		Ciclev10025660m	scaffold_7	17208075	17211871
Cp1701			-	-	-	-	-	-		Ciclev10025659m	scaffold_7	303829	305426
Af1271			-	-	-	-	-	-		Ciclev10025653m	scaffold_7	13323583	13328683
Cp0661			-	-	-	-	-	-		Ciclev10025609m	scaffold_7	5668379	5673913
Al0627		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025602m	scaffold_7	128539	131642	C_unshiu_00706:mRNA_3.1	C_unshiu_00706	16590	18098	Trigalactosyldiacylglycerol 1 isoform 1	AGI-02	78.531
Af1315			-	-	-	-	-	-		Ciclev10025598m	scaffold_7	203839	207450
Af1121			-	-	-	-	-	-		Ciclev10025591m	scaffold_7	6127464	6131417
Tf0280			-	-	-	-	-	-	SI158,SI200	Ciclev10025566m	scaffold_7	3429964	3433239	C_unshiu_00301:mRNA_24.3	C_unshiu_00301	159835	163045	Floral homeotic protein APETALA 2	AGI-05	54.268
Fb0233			O	-	-	-	-	-	SI025,SI079,SI169	Ciclev10025557m	scaffold_7	6535522	6540965	C_unshiu_00437:mRNA_15.1	C_unshiu_00437	131524	136642	WD-40 repeat-containing protein MSI4	AGI-02	47.382
Al0337			-	-	-	-	-	-		Ciclev10025556m	scaffold_7	6437406	6440864
Ov0004			-	-	-	-	-	-		Ciclev10025545m	scaffold_7	20360086	20363290	C_unshiu_00650:mRNA_9.1	C_unshiu_00650	86670	89289	Myo-inositol-1 phosphate synthase			KmG-02	17.680			NAT-02S
Cp1671			-	-	-	-	-	-		Ciclev10025512m	scaffold_7	4882520	4888243
Tf0125			-	-	-	-	-	-		Ciclev10025501m	scaffold_7	16249523	16255343	C_unshiu_01042:mRNA_11.1	C_unshiu_01042	86577	91963	Ubiquitin-specific protease family C19 protein	AGI-02	21.337
Cp1715			-	-	-	-	-	-		Ciclev10025487m	scaffold_7	2713510	2717859
Bf0197			-	-	-	-	-	-		Ciclev10025476m	scaffold_7	5654376	5658039
Cp1292			-	-	-	-	-	-		Ciclev10025390m	scaffold_7	2246732	2249558
Tf0357			-	-	-	-	-	-	SI018	Ciclev10025390m	scaffold_7	2246732	2249558	C_unshiu_01055:mRNA_7.1	C_unshiu_01055	60614	63050	Zinc finger protein JACKDAW	AGI-02	71.294
Cp1709		AAvailable marker	-	-	-	-	-	O		Ciclev10025382m	scaffold_7	1450748	1452915	C_unshiu_00624:mRNA_14.1	C_unshiu_00624	137579	139378	Cytochrome P450 84A1
Tf0026			O	-	-	-	-	-	SI111,SI288	Ciclev10025369m	scaffold_7	285299	292550	C_unshiu_00312:mRNA_28.1	C_unshiu_00312	151229	158232	Ubiquilin	AGI-02	78.531
Af1149			-	-	-	-	-	-		Ciclev10025360m	scaffold_7	12985954	12989228	C_unshiu_02261:mRNA_2.1	C_unshiu_02261	19156	21966	Glycerol kinase	AGI-05	21.630
Af2893			-	-	-	-	-	-		Ciclev10025356m	scaffold_7	1739443	1743149	C_unshiu_01334:mRNA_6.1	C_unshiu_01334	25863	29359	Putative mitochondrial chaperone BCS1-B	AGI-02	73.779
Al0401		OOthers	O	-	-	-	-	-		Ciclev10025346m	scaffold_7	13180567	13191638	C_unshiu_01698:mRNA_6.1	C_unshiu_01698	39336	40206	Hypothetical protein			KmG-02	26.204	JtR-02	-6.043	NAT-02S	22.960
Vs0006		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10025343m	scaffold_7	19024295	19026021	C_unshiu_00468:mRNA_22.1	C_unshiu_00468	132124	133922	Cytochrome P450 78A4	AGI-02	27.491			JtR-02	50.216	NAT-02S	3.328
Cp1719			-	-	-	-	-	-		Ciclev10025341m	scaffold_7	3940274	3943841
Af1207			-	-	-	-	-	-		Ciclev10025335m	scaffold_7	15605065	15607345	C_unshiu_00628:mRNA_20.1	C_unshiu_00628	144683	146646	Flavonoid 3'-monooxygenase	AGI-02	21.344
Ov0406			-	-	-	-	-	-		Ciclev10025329m	scaffold_7	5159995	5165972
Vt0025			-	-	-	-	-	-		Ciclev10025308m	scaffold_7	6764664	6770188
Af1507b			-	-	-	-	-	-		Ciclev10025301m	scaffold_7	21098230	21102921
Bf0128			O	-	-	-	-	-		Ciclev10025298m	scaffold_7	3323269	3331038	C_unshiu_00051:mRNA_2.2	C_unshiu_00051	25872	40163	Hypothetical protein	AGI-02	70.082					NAT-02S	77.157	RP-02.2	9.835
Wy0007			-	-	-	-	-	-		Ciclev10025280m	scaffold_7	15456948	15460803
Af1148			-	-	-	-	-	-		Ciclev10025238m	scaffold_7	7904865	7908319
Af3785			-	-	-	-	-	-		Ciclev10025208m	scaffold_7	5932664	5935568
Af1674			-	-	-	-	-	-		Ciclev10025184m	scaffold_7	6639833	6644164
Cp0556			-	-	-	-	-	-		Ciclev10025170m	scaffold_7	10484413	10489121
Tf0358			-	-	-	-	-	-	SI098	Ciclev10025169m	scaffold_7	2049068	2051708	No
Lp0126		AAvailable marker	O	-	-	-	O	O		Ciclev10025164m	scaffold_7	3946818	3949964	C_unshiu_00801:mRNA_10.1	C_unshiu_00801	97228	100216	Phototropic-responsive NPH3 family protein	AGI-02	65.295	KmG-02	54.892	JtR-02	26.278			RP-02.2
Af1083			-	-	-	-	-	-		Ciclev10025156m	scaffold_7	15505556	15510930
Af0004			O	-	-	-	-	-		Ciclev10025125m	scaffold_7	8447414	8453714	C_unshiu_00290:mRNA_10.1	C_unshiu_00290	83615	110154	Hypothetical protein	AGI-02	2.847
Bf0204			-	-	-	-	-	-	SI326	Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic									RP-02.2	9.835
Gn0068			-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic	AGI-02	68.446							RP-02.2	9.814
Gn0068.2		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894	C_unshiu_00084:mRNA_14.1	C_unshiu_00084	139704	145312	Zeaxanthin epoxidase, chloroplastic
Gn0068.3	Gn0068.y	OOthers	-	-	-	-	-	-		Ciclev10025089m	scaffold_7	3222483	3228894
Lp0037		OOthers	-	-	-	-	-	-		Ciclev10025045m	scaffold_7	18963487	18968140
Fb1751			-	-	-	-	-	-	SI264	Ciclev10025011m	scaffold_7	7977527	7984425	C_unshiu_00121:mRNA_40.1	C_unshiu_00121	250743	257054	Protein STRUBBELIG-RECEPTOR FAMILY 8
Cp1081			-	-	-	-	-	-		Ciclev10024992m	scaffold_7	7826603	7829404
Af1061			O	-	-	-	-	-		Ciclev10024969m	scaffold_7	6080410	6084393
Af1066			-	-	-	-	-	-		Ciclev10024951m	scaffold_7	3887010	3890047
Al0409		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI201,SI252	Ciclev10024949m	scaffold_7	5042508	5046271	No					AGI-02	50.758	KmG-02	44.930	JtR-02	29.462	NAT-02S	90.742
Vt0030	Vt0030.k		O	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014	C_unshiu_01240:mRNA_4.1	C_unshiu_01240	27655	32960	Phospholipase D	AGI-02	12.615
Ks9006			-	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014
Bf0142			O	-	-	-	-	-		Ciclev10024891m	scaffold_7	8508837	8516759	C_unshiu_00290:mRNA_16.1	C_unshiu_00290	151884	158772	Class III homeodomain leucine zipper protein	AGI-02	5.104
Bf0408			-	-	-	-	-	-		Ciclev10024877m	scaffold_7	4843157	4848614
Cp0100			O	-	-	-	-	-		Ciclev10024866m	scaffold_7	10471136	10474241	C_unshiu_00924:mRNA_4.1	C_unshiu_00924	50269	52902	Tetratricopeptide repeat-like superfamily protein	AGI-02	14.111
Cp1111		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10024860m	scaffold_7	8603450	8610239	C_unshiu_00290:mRNA_28.1	C_unshiu_00290	241335	248051	Cell division protein ftsH, putative isoform 1	AGI-02	5.054
Cte999			-	-	-	-	-	-		Ciclev10024858m	scaffold_7	11027712	11030551
Tf0120			-	-	-	-	-	-		Ciclev10024826m	scaffold_7	3376826	3385936
Vt0032			O	-	-	-	-	-	SI024	Ciclev10024737m	scaffold_7	17901487	17905433	C_unshiu_00382:mRNA_15.1	C_unshiu_00382	163577	167662	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	AGI-02	25.601							RP-02	6.081
Bf0405			-	-	-	-	-	-		Ciclev10024721m	scaffold_7	2994525	3001770
Tf0326		AAvailable marker	O	O	-	O	O	O	SI085	Ciclev10024695m	scaffold_7	2501520	2509737	C_unshiu_02417:mRNA_1.1	C_unshiu_02417	3692	11684	Histone-lysine N-methyltransferase SUVR5	AGI-02	69.928
Fb0995		OOthers	O	-	-	-	-	-	SI026	Ciclev10024677m	scaffold_7	1180019	1202408	C_unshiu_00544:mRNA_10.1	C_unshiu_00544	97318	121662	FAT domain-containing protein	AGI-02	74.555	KmG-02	82.954	JtR-02	10.215
Af1581			-	-	-	-	-	-		Ciclev10024663m	scaffold_3	27092414	27093612
Af1675			-	-	-	-	-	-		Ciclev10024649m	scaffold_3	2793365	2795811
Mf0002			-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860
Al0003	Al0003.2		-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860	C_unshiu_01778:mRNA_2.1	C_unshiu_01778	27362	28139	Dehydrin COR15	AGI-05	49.499
Af1273			-	-	-	-	-	-		Ciclev10024624m	scaffold_3	12214029	12215007
Gmom05			-	-	-	-	-	-		Ciclev10024623m	scaffold_3	33722934	33727855
Al0405			-	-	-	-	-	-		Ciclev10024622m	scaffold_3	30021998	30023908
Tf0186			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Gn0050			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009	C_unshiu_00014:mRNA_87.1	C_unshiu_00014	637698	638678	CRT binding factor 3	AGI-05	29.035	KmG-05S	21.884	JtR-05	19.008
Wy0046	Wy0046.k		-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Cp0980			-	-	-	-	-	-		Ciclev10024548m	scaffold_3	41307776	41309278
Af0009			-	-	-	-	-	-		Ciclev10024461m	scaffold_3	50406028	50412944
Cp0742			-	-	-	-	-	-		Ciclev10024455m	scaffold_3	43801281	43801864
Af1400			-	-	-	-	-	-		Ciclev10024198m	scaffold_3	30042140	30047495
Af1337			-	-	-	-	-	-		Ciclev10024178m	scaffold_3	23419574	23420180
Vt0026			-	-	-	-	-	-		Ciclev10024169m	scaffold_3	44691395	44694360
Cp0026b	Cp0026.2		O	-	-	-	-	-		Ciclev10024128m	scaffold_3	43354404	43355588
Cp2048			-	-	-	-	-	-		Ciclev10024054m	scaffold_3	807021	808331
Tf0127			-	-	-	-	-	-		Ciclev10023918m	scaffold_3	1084467	1086978
Af1578			-	-	-	-	-	-		Ciclev10023834m	scaffold_3	48016069	48017656
Af1685			-	-	-	-	-	-		Ciclev10023782m	scaffold_3	40086985	40089114	C_unshiu_00335:mRNA_9.1	C_unshiu_00335	76164	77436	Hypothetical protein	AGI-05	56.481
Cp0363			-	-	-	-	-	-		Ciclev10023762m	scaffold_3	46510039	46512543
Af1190			-	-	-	-	-	-		Ciclev10023762m	scaffold_3	46510039	46512543
Cp0190		OOthers	-	-	-	-	-	-		Ciclev10023646m	scaffold_3	18648426	18650443	C_unshiu_00618:mRNA_5.1	C_unshiu_00618	20273	22297	UPF0426 protein, chloroplastic	AGI-06	27.617
Af1647			-	-	-	-	-	-		Ciclev10023615m	scaffold_3	49533318	49539442
Cp0013			-	-	-	-	-	-		Ciclev10023436m	scaffold_3	44834035	44836704
Ov0310			-	-	-	-	-	-		Ciclev10023404m	scaffold_3	48463395	48465325	C_unshiu_00026:mRNA_46.1	C_unshiu_00026	334715	336716	Lanatoside 15-O-acetylesterase			KmG-01	21.291	JtR-01S	61.287
Al0412			-	-	-	-	-	-		Ciclev10023374m	scaffold_3	25612741	25615635
Tf0128.2			-	-	-	-	-	-		Ciclev10023354m	scaffold_3	19936499	19941380
Tf0249			-	-	-	-	-	-		Ciclev10023300m	scaffold_3	45793877	45798206
Mf0020			-	-	-	-	-	-		Ciclev10023252m	scaffold_3	2645845	2647776	No													SA-05	30.880
Af1470			-	-	-	-	-	-		Ciclev10023233m	scaffold_3	46380264	46381057	No					AGI-05	62.767
Mf0087			-	-	-	-	-	-		Ciclev10023194m	scaffold_3	32063430	32064847
Af0014			-	-	-	-	-	-		Ciclev10023139m	scaffold_3	253879	254627
Af1484			-	-	-	-	-	-		Ciclev10023136m	scaffold_3	42882909	42885640
Mf0068			-	-	-	-	-	-		Ciclev10023101m	scaffold_3	2718186	2719011
Ov0009			-	-	-	-	-	-		Ciclev10023099m	scaffold_3	47257565	47258746
Af1453			-	-	-	-	-	-		Ciclev10023068m	scaffold_3	4663211	4664667	C_unshiu_01589:mRNA_7.1	C_unshiu_01589	29063	37936	Hypothetical protein	AGI-05	27.956
Af0013			-	-	-	-	-	-		Ciclev10023060m	scaffold_3	13416061	13417219
Af1267			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Cp2046			-	-	-	-	-	-		Ciclev10023047m	scaffold_3	1465301	1468225
Af1553			-	-	-	-	-	-		Ciclev10023028m	scaffold_3	45812589	45815067
Ov0423		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10023016m	scaffold_3	42954362	42955051	C_unshiu_00152:mRNA_28.1	C_unshiu_00152	189707	190632	Hypothetical protein	AGI-05	55.522
If0203		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10022993m	scaffold_3	42229224	42231230	C_unshiu_00322:mRNA_21.1	C_unshiu_00322	121122	123131	Small ubiquitin-related modifier	AGI-05	51.293	KmG-05S	67.257	JtR-05	43.446
Af1159			-	-	-	-	-	-		Ciclev10022925m	scaffold_3	2774465	2775592
Af1587			-	-	-	-	-	-		Ciclev10022920m	scaffold_3	39483387	39486219
Af1151			-	-	-	-	-	-		Ciclev10022903m	scaffold_3	36608197	36611090
Af0016			-	-	-	-	-	-		Ciclev10022861m	scaffold_3	25074163	25075916	C_unshiu_00117:mRNA_7.1	C_unshiu_00117	38949	40765	Hypothetical protein	AGI-05	41.306
Af1168			-	-	-	-	-	-		Ciclev10022842m	scaffold_3	28389625	28390574
Bf0030			O	-	-	-	-	-		Ciclev10022841m	scaffold_3	46452893	46453717	C_unshiu_00627:mRNA_10.1	C_unshiu_00627	45215	45931	Calvin cycle protein CP12									RP-05	58.661
Su0004			-	-	-	-	-	-		Ciclev10022825m	scaffold_3	5829459	5830556
Af1684			-	-	-	-	-	-		Ciclev10022811m	scaffold_3	12901463	12904143
Af1678			-	-	-	-	-	-		Ciclev10022810m	scaffold_3	43192762	43194352
Af1317			-	-	-	-	-	-		Ciclev10022803m	scaffold_3	35932198	35935023
Af1366			-	-	-	-	-	-		Ciclev10022785m	scaffold_3	42456299	42460637
Af1603			-	-	-	-	-	-		Ciclev10022774m	scaffold_3	42974947	42976794
Tf0352			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Af1496			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Af1227			-	-	-	-	-	-		Ciclev10022750m	scaffold_3	42672043	42673648
Af1192			-	-	-	-	-	-		Ciclev10022723m	scaffold_3	37094785	37098257
Al0319		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10022720m	scaffold_3	43447942	43449920	C_unshiu_00411:mRNA_15.1	C_unshiu_00411	140821	145311	Actin-depolymerizing factor 2	AGI-03	46.274	KmG-05S	65.273	JtR-05	42.339			RP-05	72.912
Fb1567			-	-	-	-	-	-		Ciclev10022690m	scaffold_3	50637673	50640392	No					AGI-05	103.212
Tf0376		AAvailable marker	O	-	-	-	O	O	SI072	Ciclev10022680m	scaffold_3	8528292	8529236	C_unshiu_00154:mRNA_1.1	C_unshiu_00154	9832	10761	CRT binding factor 3	AGI-05	41.853
Af1114			-	-	-	-	-	-		Ciclev10022658m	scaffold_3	602713	605468
Af1328			-	-	-	-	-	-		Ciclev10022653m	scaffold_3	39834680	39837971
Af1401			-	-	-	-	-	-		Ciclev10022652m	scaffold_3	43753763	43756161
Af1128			-	-	-	-	-	-		Ciclev10022649m	scaffold_3	49508288	49511063
Af1101			-	-	-	-	-	-		Ciclev10022644m	scaffold_3	8843644	8845811
Af1595			-	-	-	-	-	-		Ciclev10022641m	scaffold_3	9040181	9045543
Af1500			-	-	-	-	-	-		Ciclev10022594m	scaffold_3	16957427	16959735
Tf0153		AAvailable marker	O	-	-	-	O	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta	AGI-05	41.267
Tf0154		AAvailable marker	O	-	-	-	-	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta
Wy0009			-	-	-	-	-	-		Ciclev10022580m	scaffold_3	48621909	48624858
Al0301			-	-	-	-	-	-		Ciclev10022576m	scaffold_3	45906879	45907641
Tf0028			-	-	-	-	-	-	SI377	Ciclev10022572m	scaffold_3	19780711	19782241	C_unshiu_00443:mRNA_20.1	C_unshiu_00443	195567	202424	MADS-box transcription factor
Cp0278			-	-	-	-	-	-		Ciclev10022561m	scaffold_3	24750794	24752907	C_unshiu_00286:mRNA_8.1	C_unshiu_00286	73068	81236	Hypothetical protein	AGI-04	122.142
Al0326		AAvailable marker	-	-	-	O	O	-	SI065,SI344	Ciclev10022558m	scaffold_3	6409311	6411254	C_unshiu_00443:mRNA_7.1	C_unshiu_00443	62532	64193	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AGI-05	42.609	KmG-05S	32.841	JtR-05	16.025			RP-05	27.235
Al0327	Al0326.2		-	-	-	-	-	-		Ciclev10022558m	scaffold_3	6409311	6411254
Af1029			-	-	-	-	-	-		Ciclev10022553m	scaffold_3	2110308	2113166
Af1396			-	-	-	-	-	-		Ciclev10022545m	scaffold_3	4920662	4923421	C_unshiu_00520:mRNA_16.2	C_unshiu_00520	166824	167867	Ribosomal protein L19 family protein	AGI-05	28.041
Cp0401			-	-	-	-	-	-		Ciclev10022489m	scaffold_3	1056116	1057706
Ov0126		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10022482m	scaffold_3	46814909	46817474
Ov0127	Ov0126.2		-	-	-	-	-	-	SI124,SI284	Ciclev10022482m	scaffold_3	46814909	46817474	C_unshiu_00053:mRNA_57.3	C_unshiu_00053	477728	479995	ADP-ribosylation factor A1F	AGI-05	65.510	KmG-05S	81.631	JtR-05	45.715			RP-05	64.195
Af1022			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Edp002			-	-	-	-	-	-		Ciclev10022479m	scaffold_3	8486491	8488997
Tf0145			-	-	-	-	-	-	SI092	Ciclev10022479m	scaffold_3	8486491	8488997	C_unshiu_00154:mRNA_7.1	C_unshiu_00154	49131	60112	Floral homeotic protein APETALA 1
Af1374			-	-	-	-	-	-		Ciclev10022450m	scaffold_3	39092285	39094629
If0218			-	-	-	-	-	-		Ciclev10022441m	scaffold_3	449407	451690
Af1209			-	-	-	-	-	-		Ciclev10022439m	scaffold_3	1281119	1281817
Af1466			-	-	-	-	-	-		Ciclev10022406m	scaffold_3	2803785	2805325
Af1562			-	-	-	-	-	-		Ciclev10022384m	scaffold_3	548048	549062
Lp0048			-	-	-	-	-	-		Ciclev10022383m	scaffold_3	46374292	46377587
Mf0058		T3 or more alleleic model	-	-	-	-	-	-		Ciclev10022378m	scaffold_3	46818817	46822856	C_unshiu_00053:mRNA_58.1	C_unshiu_00053	481338	485184	Nitrogen regulatory protein P-II	AGI-08	57.196			JtR-05	39.516
Cp1815		OOthers	-	-	-	-	-	-		Ciclev10022373m	scaffold_3	8256398	8257886	C_unshiu_00154:mRNA_28.1	C_unshiu_00154	274299	275412	Wiskott-Aldrich syndrome protein family member 2	AGI-05	51.501
Cp2223		OOthers	-	-	-	-	-	-		Ciclev10022371m	scaffold_3	3483334	3485637	C_unshiu_00933:mRNA_9.1	C_unshiu_00933	86958	89273	Protein LATERAL ORGAN BOUNDARIES	AGI-05	25.049
Tf0300		AAvailable marker	O	O	-	-	O	O		Ciclev10022370m	scaffold_3	43862440	43863744	C_unshiu_01051:mRNA_10.1	C_unshiu_01051	83417	84406	Auxin-induced protein IAA4	AGI-05	54.726
Tf0375			-	-	-	-	-	-		Ciclev10022365m	scaffold_3	13034654	13036082	C_unshiu_00020:mRNA_62.1	C_unshiu_00020	527751	528816	Homeobox leucine zipper protein	AGI-05	40.558
Cp0500			-	-	-	-	-	-		Ciclev10022359m	scaffold_3	2292399	2293655
Al0614			-	-	-	-	-	-		Ciclev10022348m	scaffold_3	44987719	44991534	C_unshiu_00069:mRNA_32.1	C_unshiu_00069	220620	224375	Methyl-CpG-binding domain 4	AGI-05	56.788	KmG-06	35.565
Bf0146			O	-	-	-	-	-		Ciclev10022345m	scaffold_3	48528820	48531316	C_unshiu_00026:mRNA_37.1	C_unshiu_00026	280361	282836	RRNA-processing protein FCF1	AGI-05	78.274
Lp0111			-	-	-	-	-	-		Ciclev10022339m	scaffold_3	36096009	36099799
Tf0053			-	-	-	-	-	-	SI305	Ciclev10022321m	scaffold_3	29153425	29156189	C_unshiu_01169:mRNA_3.1	C_unshiu_01169	39141	41442	Peptide methionine sulfoxide reductase B5	AGI-05	42.265
Cp0748			-	-	-	-	-	-		Ciclev10022288m	scaffold_3	34673451	34674900	C_unshiu_00669:mRNA_14.1	C_unshiu_00669	103814	104779	Light-dependent short hypocotyls protein	AGI-01	33.562
Af1219			-	-	-	-	-	-		Ciclev10022271m	scaffold_3	42200299	42203934
Cp0012			O	-	-	-	-	-		Ciclev10022248m	scaffold_3	44442841	44444278
Af1367			-	-	-	-	-	-		Ciclev10022240m	scaffold_3	3643442	3647377
Ov0309			-	-	-	-	-	-		Ciclev10022230m	scaffold_3	8078609	8083078
Ov0409			-	-	-	-	-	-		Ciclev10022219m	scaffold_3	4736047	4740432
Af1221			-	-	-	-	-	-		Ciclev10022216m	scaffold_3	6329133	6332201
Fb0364		AAvailable marker	-	-	-	-	O	O	SI373	Ciclev10022215m	scaffold_3	13810497	13813004	C_unshiu_00542:mRNA_3.1	C_unshiu_00542	15940	18433	Nascent polypeptide-associated complex subunit alpha-like protein	AGI-05	41.306	KmG-05S	55.482	JtR-05	39.609			RP-05	56.834
Af1160			-	-	-	-	-	-		Ciclev10022213m	scaffold_3	7425353	7428313
Mf0055		DDominant marker	-	-	-	-	O	O		Ciclev10022212m	scaffold_3	45551345	45552620	C_unshiu_01674:mRNA_4.1	C_unshiu_01674	17777	28549	Hypothetical protein	AGI-05	57.948	KmG-05S	75.866	JtR-05	38.749	NAT-05	39.573
Mf0056.2	Mf0055.2		-	-	-	-	-	-		Ciclev10022212m	scaffold_3	45551345	45552620
Af1471			-	-	-	-	-	-		Ciclev10022208m	scaffold_3	9747775	9750640
Fb1678			O	-	-	-	-	-		Ciclev10022198m	scaffold_3	6000266	6002833	C_unshiu_00997:mRNA_6.2	C_unshiu_00997	44420	46811	Putative axial regulator YABBY 2	AGI-05	45.297
Af1543			-	-	-	-	-	-		Ciclev10022165m	scaffold_3	42180650	42183843
Bf0203			-	-	-	-	-	-		Ciclev10022162m	scaffold_3	42410482	42413511
Cp0403			-	-	-	-	-	-		Ciclev10022161m	scaffold_3	749176	751194
Al0605		OOthers	-	-	-	-	-	-		Ciclev10022151m	scaffold_3	41434064	41437122	C_unshiu_00194:mRNA_5.1	C_unshiu_00194	38569	41571	Eukaryotic translation initiation factor 4E	AGI-05	48.750	KmG-05S	65.384
Cp0921		OOthers	-	-	-	-	-	-		Ciclev10022149m	scaffold_3	25448858	25451858
Af1287			-	-	-	-	-	-		Ciclev10022137m	scaffold_3	39601128	39604586
Wy0002			-	-	-	-	-	-		Ciclev10022129m	scaffold_3	18472967	18473951
Af2558			-	-	-	-	-	-		Ciclev10022119m	scaffold_3	49740454	49743754
Af1021			-	-	-	-	-	-		Ciclev10022113m	scaffold_3	40664635	40665640
Tf0071			-	-	-	-	-	-	SI084,SI146	Ciclev10022102m	scaffold_3	26610747	26612959	C_unshiu_00167:mRNA_6.1	C_unshiu_00167	57300	62494	HAUS augmin-like complex subunit	AGI-03	46.274
Af1276			-	-	-	-	-	-		Ciclev10022100m	scaffold_3	7080222	7081373
Cp0007		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10022090m	scaffold_3	46924692	46927004
Bf0215			-	-	-	-	-	-		Ciclev10022088m	scaffold_3	50793520	50795340
Bf0177			-	-	-	-	-	-	SI060	Ciclev10022075m	scaffold_3	8186689	8189902	C_unshiu_00154:mRNA_43.2	C_unshiu_00154	341574	344576	Phosphoserine phosphatase	AGI-05	44.047
Al0217		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI350	Ciclev10022061m	scaffold_3	1203357	1206483	No							KmG-05S		JtR-05	25.182
Al0218.2			-	-	-	-	-	-		Ciclev10022061m	scaffold_3	1203357	1206483
Cp2229		AAvailable marker	-	-	-	-	O	O		Ciclev10022058m	scaffold_3	4117485	4120274	C_unshiu_00318:mRNA_6.1	C_unshiu_00318	44376	47085	Nucleoside diphosphate kinase	AGI-05	27.135
Af1013			-	-	-	-	-	-		Ciclev10022053m	scaffold_3	48621909	48624876
Tf0036		AAvailable marker	O	-	-	-	O	O		Ciclev10022032m	scaffold_3	43850269	43852816	C_unshiu_01051:mRNA_11.1	C_unshiu_01051	94369	96339	Auxin-responsive protein IAA14	AGI-05	53.260
Cp1627		AAvailable marker	-	-	-	-	O	O		Ciclev10022024m	scaffold_3	13309398	13310636	C_unshiu_00431:mRNA_6.1	C_unshiu_00431	44507	45451	Chloroplast small heat shock protein	AGI-05	41.272
Al0309		AAvailable marker	O	-	-	-	-	O		Ciclev10022019m	scaffold_3	44900059	44900865	C_unshiu_00069:mRNA_47.1	C_unshiu_00069	301188	317479	Hypothetical protein			KmG-05S	73.967	JtR-05	38.749			RP-05	86.332
Al0310	Al0309.2		-	-	-	-	-	-		Ciclev10022019m	scaffold_3	44900059	44900865
Tf0420		AAvailable marker	O	O	O	-	O	O		Ciclev10022018m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Mf0041		AAvailable marker	-	-	-	-	O	O		Ciclev10022012m	scaffold_3	45076821	45080633	C_unshiu_00069:mRNA_16.1	C_unshiu_00069	123654	127483	Histidine-containing phosphotransfer protein 1	AGI-05	56.534	KmG-05S	73.977	JtR-05	38.393
Ov0311			-	-	-	-	-	-		Ciclev10022001m	scaffold_3	18341166	18342395	C_unshiu_00417:mRNA_9.1	C_unshiu_00417	93426	94543	Kunitz trypsin inhibitor			KmG-04	10.598			NAT-09	82.730
Lp0139			-	-	-	-	-	-		Ciclev10021991m	scaffold_3	1470163	1473304
Bf0156			-	-	-	-	-	-		Ciclev10021991m	scaffold_3	1470163	1473304
Cp2145			-	-	-	-	-	-		Ciclev10021983m	scaffold_3	12413337	12415802
Tf0081			-	-	-	-	-	-	SI038,SI324	Ciclev10021980m	scaffold_3	38214468	38216861	C_unshiu_00575:mRNA_8.1	C_unshiu_00575	47693	51431	Leucine-rich repeat disease resistance protein-like	AGI-05	48.590
Cp1490			-	-	-	-	-	-		Ciclev10021970m	scaffold_3	6369398	6372018
Fb0130			-	-	-	-	-	-		Ciclev10021969m	scaffold_3	894965	897547
Cp1628			-	-	-	-	-	-		Ciclev10021963m	scaffold_3	12822911	12825620	C_unshiu_02666:mRNA_2.1	C_unshiu_02666	10104	12687	Rhodanese/cell cycle control phosphatase superfamily protein	AGI-05	41.272
Af1188			-	-	-	-	-	-		Ciclev10021960m	scaffold_3	5606601	5609366
If0222			-	-	-	-	-	-		Ciclev10021958m	scaffold_3	6541868	6545524
Tf0051			-	-	-	-	-	-	SI027,SI214	Ciclev10021952m	scaffold_3	3964036	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43	AGI-05	25.590
Af1203			-	-	-	-	-	-		Ciclev10021949m	scaffold_3	40219315	40224503
Af1536			-	-	-	-	-	-		Ciclev10021945m	scaffold_3	6113049	6116055
Af1427			-	-	-	-	-	-		Ciclev10021942m	scaffold_3	36963026	36965935
Tf0317			-	-	-	-	-	-	SI145	Ciclev10021941m	scaffold_3	2106810	2109266	C_unshiu_00490:mRNA_19.1	C_unshiu_00490	159122	161521	Transcription factor bHLH47
Mf0080		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663	C_unshiu_00217:mRNA_35.1	C_unshiu_00217	286418	288656	Transmembrane BAX inhibitor motif-containing protein 4	AGI-05	55.049	KmG-05S	64.740	JtR-05	38.503			RP-04	37.046
Mf0081.2	Mf0080.2	OOthers	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663
Cp1903			-	-	-	-	-	-		Ciclev10021934m	scaffold_3	40231383	40235237
Tf0108			-	-	-	-	-	-		Ciclev10021923m	scaffold_3	6828481	6829499
Wy0006			O	-	-	-	-	-		Ciclev10021901m	scaffold_3	4903592	4905871	C_unshiu_00628:mRNA_6.1	C_unshiu_00628	38419	40239	Bax inhibitor 1			KmG-05S	19.072	JtR-05	19.698	NAT-05	21.803
Bf0165			-	-	-	-	-	-	SI280	Ciclev10021901m	scaffold_3	4903592	4905871	C_unshiu_00628:mRNA_6.1	C_unshiu_00628	38419	40239	Bax inhibitor 1	AGI-05	29.035					NAT-05	23.083	RP-05	19.690
Al0306		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI029	Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin					JtR-05	23.944
Al0307	Al0307.2		-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222
Mf0017		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin	AGI-05	44.674
Af1679			-	-	-	-	-	-		Ciclev10021896m	scaffold_3	4260126	4262819	C_unshiu_00186:mRNA_34.1	C_unshiu_00186	288266	290432	Adenylate kinase	AGI-05	29.035
Af1390			-	-	-	-	-	-		Ciclev10021895m	scaffold_3	12254177	12259003
Cp1533			-	-	-	-	-	-		Ciclev10021868m	scaffold_3	4831751	4834270	C_unshiu_00768:mRNA_14.1	C_unshiu_00768	110682	113065	Lil3 protein	AGI-05	29.039
Tf0331			-	-	-	-	-	-		Ciclev10021868m	scaffold_3	4831751	4834270
Cp1268			-	-	-	-	-	-		Ciclev10021861m	scaffold_3	7327436	7329167	C_unshiu_00199:mRNA_13.1	C_unshiu_00199	87134	88461	Light-harvesting complex I protein subunit a4	AGI-05	44.864
Al0335			-	-	-	-	-	-		Ciclev10021844m	scaffold_3	6131214	6135849
Af1195			-	-	-	-	-	-		Ciclev10021820m	scaffold_3	42034255	42039591
Af1198			-	-	-	-	-	-		Ciclev10021819m	scaffold_3	2319675	2322962
Cp1958			-	-	-	-	-	-		Ciclev10021818m	scaffold_3	8910454	8913829
Mf0065			-	-	-	-	-	-		Ciclev10021816m	scaffold_3	32925664	32929662
Af1082			-	-	-	-	-	-		Ciclev10021811m	scaffold_3	43869583	43874373
Bf0118			-	-	-	-	-	-		Ciclev10021811m	scaffold_3	43869583	43874373
Vs0004			-	-	-	-	-	-		Ciclev10021761m	scaffold_3	2078691	2083111	C_unshiu_00490:mRNA_23.1	C_unshiu_00490	182148	190847	Nucleosome assembly protein			KmG-06	51.244
Cp1427		AAvailable marker	-	-	-	-	O	O		Ciclev10021746m	scaffold_3	45576863	45579197	C_unshiu_00326:mRNA_5.1	C_unshiu_00326	23073	25265	Bifunctional protein FolD	AGI-05	58.917
Af1068			O	-	-	-	-	-		Ciclev10021732m	scaffold_3	40110008	40113420	C_unshiu_00335:mRNA_13.1	C_unshiu_00335	99790	103133	Protein vip1	AGI-05	48.750
Af1166			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Al0036			-	-	-	-	-	-		Ciclev10021716m	scaffold_3	41576813	41581730
Af1309			-	-	-	-	-	-		Ciclev10021713m	scaffold_3	50647753	50652010
Cp0001			O	-	-	-	-	-		Ciclev10021700m	scaffold_3	47576415	47578036
Tf0256		AtAvailable marker	O	-	-	-	O	O		Ciclev10021699m	scaffold_3	43420187	43422432	C_unshiu_00411:mRNA_13.1	C_unshiu_00411	116444	118424	Myb-related protein Myb4	AGI-05	52.314
Tf0433			-	-	-	-	-	-		Ciclev10021699m	scaffold_3	43420187	43422432
Cp1436			-	-	-	-	-	-		Ciclev10021696m	scaffold_3	48720837	48722931
Lp0207			O	-	-	-

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Target: Genome/map	Scaffold/LG