Citrus CAPS Marker Database

National Agriculture and Food Research Organization
Key word search
  
Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Al0645 ------TP Ciclev10033996mscaffold_4356772358913
Al0015 ------TP Ciclev10033914mscaffold_42507143125077010
Al0231 ------TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609ShatterproofRP-06.17.272
Tf0320 ------SI203TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0745.716
Edw001 AAvailable marker -----OTP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609Shatterproof
Tf0349 ------TP Ciclev10033770mscaffold_42057368320575539
Al0617 AAvailable marker O---OOTP Ciclev10033546mscaffold_410211791023023J C_unshiu_00012:mRNA_24.1C_unshiu_00012188654191971Ubiquitin-binding WIYLD domain proteinAGI-078.553JtR-0774.121
Tf0335 ------SI014,SI168TP Ciclev10033529mscaffold_424577982458868J C_unshiu_00979:mRNA_19.1C_unshiu_009798539086600C2 domain proteinAGI-0713.855
Tf0367 ------TP Ciclev10033497mscaffold_41394188013946022
Cte996 ------TP Ciclev10033219mscaffold_41402270814024239
Af1202 ------TP Ciclev10033216mscaffold_41592757615929918
Al0331 AAvailable marker -----OTP Ciclev10033190mscaffold_484066328407188J C_unshiu_00111:mRNA_9.1C_unshiu_001118353184087Hypothetical proteinKmG-099.593JtR-0752.611RP-0719.079
Gn0040 AAvailable marker ----OOSI015,SI337TP Ciclev10033176mscaffold_41623275616233365J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0743.542KmG-0756.094JtR-0748.672
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af1122 ------TP Ciclev10033093mscaffold_42387159323873478
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Fb0343 AAvailable marker O----OTP Ciclev10033061mscaffold_42505904525061910J C_unshiu_00001:mRNA_322.1C_unshiu_0000120420622044301U6 snRNA-associated Sm-like protein LSm7KmG-07
Cp0237 ------TP Ciclev10033007mscaffold_41065238110655082J C_unshiu_00483:mRNA_11.1C_unshiu_00483100177109515Protein LSD1AGI-0735.506
Bf1176 ------TP Ciclev10033000mscaffold_42431210824313141
Lp0044 ------TP Ciclev10032981mscaffold_42361842423622719
Lp0142 ------TP Ciclev10032977mscaffold_429768732978308
Af1196 ------TP Ciclev10032970mscaffold_42109040821092841
Af1330 ------TP Ciclev10032948mscaffold_41992708419929921
Gmom28 ------TP Ciclev10032943mscaffold_41259611312597155
Ov0116 ------TP Ciclev10032931mscaffold_431938753196468J C_unshiu_00342:mRNA_22.1C_unshiu_00342154980164222Hypothetical proteinKmG-0253.208JtR-0227.051RP-02.25.192
Cp0039 O-----TP Ciclev10032929mscaffold_415496791551396J C_unshiu_00012:mRNA_98.1C_unshiu_00012722822724539LOB domain-containing protein 12AGI-0711.882
Lp0112 AAvailable marker O-----TP Ciclev10032923mscaffold_437498093751724J C_unshiu_00236:mRNA_28.1C_unshiu_00236161422163318ATP synthase subunit d, mitochondrialAGI-0719.603RP-0750.962
Lp0012 ------TP Ciclev10032909mscaffold_42135177621355223
Mf0010 Bno homozygous cultivar with minor allele ------SI048,SI149TP Ciclev10032902mscaffold_41946766919468803J C_unshiu_00099:mRNA_4.1C_unshiu_00099124461335730S ribosomal protein 3, chloroplasticAGI-0755.503KmG-0742.271JtR-0735.215NAT-07
Cp0439 ------TP Ciclev10032902mscaffold_41946766919468803
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Tf0202 ------TP Ciclev10032893mscaffold_436366673641089
Tf0243 ------SI231TP Ciclev10032893mscaffold_436366673641089J C_unshiu_00236:mRNA_46.1C_unshiu_00236271647281392Nuclear transcription factor Y subunit B-8
Cp0239 ------TP Ciclev10032871mscaffold_41061500510617641
Mf0019Mf0018.2 ------TP Ciclev10032864mscaffold_41235608112357713
Tf0270 ------TP Ciclev10032838mscaffold_4213798215848
Tf0009.2 ------TP Ciclev10032838mscaffold_4213798215848
Tf0410 AAvailable marker O---OOTP Ciclev10032838mscaffold_4213798215848J C_unshiu_00168:mRNA_34.1C_unshiu_00168273522275858Pollen-specific protein SF3AGI-076.146
Tf0045 ------SI303,SI321TP Ciclev10032837mscaffold_42349602023497466J C_unshiu_00001:mRNA_74.1C_unshiu_00001490607491890Homeobox transcription factorAGI-0774.573
Al0034 ------TP Ciclev10032830mscaffold_41794454517945441
Cp1907 ------TP Ciclev10032825mscaffold_41776359617766370
Tf0148 AAvailable marker O---OOSI119TP Ciclev10032816mscaffold_42099870821001535J C_unshiu_00010:mRNA_116.1C_unshiu_00010869802872410Putative WRKY transcription factor 75AGI-0764.812
Ov0002 AAvailable marker O---OOSI110,SI179TP Ciclev10032770mscaffold_424228612424838J C_unshiu_00979:mRNA_13.2C_unshiu_00979505085247860S ribosomal protein L10AGI-0713.657JtR-0768.221RP-0782.035
Ov0511 ------TP Ciclev10032764mscaffold_461014826103243
Bf0034 ------TP Ciclev10032747mscaffold_41682125516823718
Wy0022 ------TP Ciclev10032739mscaffold_42491406824915637
Al0206 AAvailable marker ----OOTP Ciclev10032727mscaffold_41230948012311438J C_unshiu_00365:mRNA_26.1C_unshiu_00365192643194502NADPH-dependent codeinone reductase-like proteinAGI-0738.565JtR-0752.611RP-0729.935
Lp0022 ------TP Ciclev10032703mscaffold_424228612424838
Cp1336 ------TP Ciclev10032697mscaffold_433359453338632
Gn0002 ------TP Ciclev10032697mscaffold_433359453338632J C_unshiu_00465:mRNA_12.1C_unshiu_00465149021153095Hypothetical proteinAGI-0790.233JtR-0764.361
Af1623 ------TP Ciclev10032683mscaffold_4612480615318J C_unshiu_01079:mRNA_2.2C_unshiu_0107931365814Thylakoid lumenal 15 kDa protein 1, chloroplasticAGI-077.907
Af3142 ------TP Ciclev10032672mscaffold_494128649416686
Lp0217 ------TP Ciclev10032654mscaffold_41827417118276675
Af1690 ------TP Ciclev10032651mscaffold_42392375723925178J C_unshiu_00001:mRNA_137.1C_unshiu_00001920379924128Hypothetical proteinAGI-0777.752
Tf0369 ------TP Ciclev10032644mscaffold_41232043912324228
Bf0027 ------SI372TP Ciclev10032632mscaffold_41456545614567860J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0740.515
Cp0861 ------TP Ciclev10032618mscaffold_463351386336149
Gn0037 ------TP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homologAGI-0855.656
Tf0005.2 AAvailable marker O----OTP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homolog
Al0649Al0649.snA ------TP Ciclev10032578mscaffold_42104204921048279
Bf0006 ------TP Ciclev10032578mscaffold_42104204921048279
Tf0313 ------TP Ciclev10032572mscaffold_42053347420543182
Edb002 ------TP Ciclev10032572mscaffold_42053347420543182
Wy0025 ------SI004TP Ciclev10032547mscaffold_42443400524435526J C_unshiu_00001:mRNA_229.1C_unshiu_0000114464461447952NAC domain-containing protein 29
Wy0025.2Wy0025.em ------TP Ciclev10032547mscaffold_42443400524435526
Cp0089 Bno homozygous cultivar with minor allele O-O---TP Ciclev10032543mscaffold_42385883023861090J C_unshiu_00001:mRNA_128.1C_unshiu_00001852968856494CAAX amino terminal protease family proteinAGI-0777.194
Af1545 ------TP Ciclev10032524mscaffold_421537182155194
Tf0043 ------TP Ciclev10032519mscaffold_42482026924824732J C_unshiu_00001:mRNA_295.1C_unshiu_0000118713011874281Agamous-like MADS-box protein AGL15AGI-0784.593
Af1387 ------TP Ciclev10032517mscaffold_42267600822680724
Vt0028 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinAGI-0751.998KmG-0744.183JtR-0739.088
Ks9013 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinKmG-0745.284JtR-0739.119
Af1405 ------TP Ciclev10032481mscaffold_42450383824505365J C_unshiu_00001:mRNA_238.1C_unshiu_0000115138111515209FH interacting protein 1AGI-0783.026
Ov0308 ------TP Ciclev10032476mscaffold_41673015016735004
Cp1854 ------TP Ciclev10032474mscaffold_42091750920920961
Af1680 ------TP Ciclev10032474mscaffold_42091750920920961
Cp1050 ------TP Ciclev10032471mscaffold_415378351540818
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Vt0020 ------TP Ciclev10032461mscaffold_419701291972842
Bf0109 ------SI233TP Ciclev10032461mscaffold_419701291972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseRP-0751.394
If0005 OOthers ------TP Ciclev10032438mscaffold_42062946320633356J C_unshiu_00015:mRNA_81.1C_unshiu_00015667011671011Glucosamine/galactosamine-6-phosphate isomerase family proteinJtR-0725.458NAT-0715.764
Cp0093 Bno homozygous cultivar with minor allele O-----TP Ciclev10032427mscaffold_42359643423599906J C_unshiu_00001:mRNA_89.1C_unshiu_00001587949598235Putative WRKY transcription factor 72AGI-0774.537
Cp2118 ------TP Ciclev10032406mscaffold_41456545614568265J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0737.152
Af1134 ------TP Ciclev10032388mscaffold_42144380321447097
Af1442 ------TP Ciclev10032384mscaffold_42461035224612338
Af1376 ------TP Ciclev10032383mscaffold_4428646432345
Cp0086 OOthers O-----TP Ciclev10032381mscaffold_42415485624157188
Cp0062 O-----TP Ciclev10032378mscaffold_41610719916109587J C_unshiu_01642:mRNA_2.1C_unshiu_016421631620085Ribose-phosphate diphosphokinaseAGI-0745.716
Af1212 ------TP Ciclev10032370mscaffold_41711891617121135
Al0030 ------TP Ciclev10032368mscaffold_41842306318426424
Af1266 ------TP Ciclev10032367mscaffold_484003788404853
Fb0208 ------TP Ciclev10032366mscaffold_42356992423573605
Wy0011 OOthers O-----SI091TP Ciclev10032364mscaffold_42441760224419019J C_unshiu_00001:mRNA_226.1C_unshiu_0000114299431431279Enoyl CoA hydratase/isomeraseAGI-0786.288
Cp1340 ------TP Ciclev10032342mscaffold_4125954131376
Lp0219 ------TP Ciclev10032329mscaffold_461289526131314J C_unshiu_01202:mRNA_8.1C_unshiu_012025769160017Acyl-CoA N-acyltransferases superfamily protein isoform 1AGI-0161.636NAT-01S60.000
Af1509 ------TP Ciclev10032314mscaffold_42356425123568956J C_unshiu_00001:mRNA_83.3C_unshiu_00001555659560336Hypersensitive-induced response protein 1AGI-0773.796
Vs0008 ------TP Ciclev10032306mscaffold_4947943949892
Al0505 ------TP Ciclev10032306mscaffold_4947943949892J C_unshiu_00012:mRNA_14.1C_unshiu_00012117194125051Plasma membrane intrinsic proteinRP-0751.815
Gmom22 ------TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1AGI-0778.469KmG-072.659
Tf0323 ------SI030TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1
Tf0339 ------SI019TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1
Cp1352 ------TP Ciclev10032297mscaffold_481987878204052
Tf0321 ------SI003TP Ciclev10032283mscaffold_42434164224346244J C_unshiu_00001:mRNA_213.1C_unshiu_0000113581151363266Putative WRKY transcription factor 57
Bf1243 ------TP Ciclev10032276mscaffold_42465701524660141J C_unshiu_00001:mRNA_262.1C_unshiu_0000116636301666687U3 small nucleolar ribonucleoprotein IMP4AGI-0784.114
Tf0198 AAvailable marker O----OTP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7
Gn0048 AAvailable marker -O--OOSI289TP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7AGI-0774.225KmG-077.964JtR-074.200
Fb0234 ------SI250,SI265TP Ciclev10032271mscaffold_41617683616178421J C_unshiu_00086:mRNA_8.1C_unshiu_000865276454349Protodermal factor 1.3, putativeAGI-0745.424RP-0730.993
Vt0002 ------TP Ciclev10032270mscaffold_42086875020872170
Af1381 ------TP Ciclev10032242mscaffold_42461246324616531
Mf0059 ------TP Ciclev10032222mscaffold_415867901589604
Af1420 ------TP Ciclev10032187mscaffold_41976228219765759
Lp0027 ------TP Ciclev10032174mscaffold_41496725414971449
Af2075 ------TP Ciclev10032164mscaffold_42280120322802540
Af1495 ------TP Ciclev10032113mscaffold_42252309222528307J C_unshiu_00004:mRNA_77.1C_unshiu_00004548746553542UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3AGI-0769.544
Al0332 ------TP Ciclev10032086mscaffold_41489572814896991
Af1349 ------TP Ciclev10032073mscaffold_432902733293928
Af1657 ------TP Ciclev10032070mscaffold_42258485222588013
Af1432 ------TP Ciclev10032069mscaffold_42366678423669594J C_unshiu_00001:mRNA_103.1C_unshiu_00001659252662036UDP-galactose/UDP-glucose transporter 5BAGI-0772.828
Al0242 ------TP Ciclev10032030mscaffold_434375773441367
Gmom27 ------TP Ciclev10032012mscaffold_41604632216048971
Edb003 OOthers ------TP Ciclev10032012mscaffold_41604632216048971J C_unshiu_01260:mRNA_4.1C_unshiu_012603013632342Putative WRKY transcription factor 28AGI-0741.830
Tf0365 ------TP Ciclev10032012mscaffold_41604632216048971
Mf0089 ------TP Ciclev10031989mscaffold_41267867112681681
Bf0113 ------TP Ciclev10031989mscaffold_41267867112681681
Vt0029 ------TP Ciclev10031975mscaffold_424513452454325J C_unshiu_00979:mRNA_17.1C_unshiu_009797901681937GroES-like zinc-binding alcohol dehydrogenase family proteinAGI-0713.238
Cp0870 Bno homozygous cultivar with minor allele ------SI338TP Ciclev10031974mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-075.180
Cp1908 ------TP Ciclev10031956mscaffold_41749913017500420
Af1150 ------TP Ciclev10031943mscaffold_42540903525412164
Tf0094 ------SI006TP Ciclev10031937mscaffold_42395703823959134J C_unshiu_00001:mRNA_145.1C_unshiu_00001950657954895Myb family transcription factor APLAGI-0777.141
Al0613 ------TP Ciclev10031928mscaffold_42307823223081009
Tf0100 ------TP Ciclev10031899mscaffold_42291261522914628
Cp1196 ------TP Ciclev10031889mscaffold_41962606119629792
Cp0083 O-----TP Ciclev10031889mscaffold_41962606119629792
Cp1407 ------TP Ciclev10031886mscaffold_42124308521244983
Af1474 ------TP Ciclev10031886mscaffold_42124308521244983
Cp0006 O-----TP Ciclev10031874mscaffold_41461089714614381
Tf0318 AAvailable marker OOO-OOTP Ciclev10031873mscaffold_41375143313754767J C_unshiu_00240:mRNA_28.2C_unshiu_00240282002285335Transcription factor bHLH137AGI-0737.467
Ov0507 AAvailable marker -----OTP Ciclev10031860mscaffold_4642157644823
Ov0508Ov0507.2 ------SI322TP Ciclev10031860mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-078.291JtR-0776.060
Cp1302 ------TP Ciclev10031853mscaffold_474078347414015
Tf0337 AAvailable marker O---OOTP Ciclev10031846mscaffold_41963541519637061J C_unshiu_00099:mRNA_23.1C_unshiu_00099186480188051Ap2 erf and b3 domain-containing transcription factor rav2AGI-0754.869
Tf0267 AAvailable marker O---OOTP Ciclev10031834mscaffold_41257152612575185J C_unshiu_00847:mRNA_8.1C_unshiu_008474865152296Squamosa promoter-binding-like protein 13AGI-0737.800
Lp0030 ------TP Ciclev10031831mscaffold_42318570323187916
Tf0165 AAvailable marker O---OOTP Ciclev10031793mscaffold_41960547319608059J C_unshiu_00099:mRNA_19.1C_unshiu_00099154500156794Two-component response regulator ARR18AGI-0755.503
Af1569 ------TP Ciclev10031754mscaffold_42319247223198396
Tf0227 AAvailable marker O---OOTP Ciclev10031750mscaffold_42166606121671693J C_unshiu_00010:mRNA_30.1C_unshiu_00010183508188843Trihelix transcription factor GT-1AGI-0835.927
Tf0403 ------TP Ciclev10031750mscaffold_42166606121671693
Af1187 ------TP Ciclev10031748mscaffold_42499601725000652J C_unshiu_00001:mRNA_314.1C_unshiu_0000119916931996431Tocopherol O-methyltransferaseAGI-0785.027
Af1106 ------TP Ciclev10031741mscaffold_42213114222133007
Cp0634 ------TP Ciclev10031740mscaffold_41566046315665838J C_unshiu_00824:mRNA_8.1C_unshiu_0082496745119992Hypothetical proteinAGI-0732.589
Cp0033 O-----TP Ciclev10031724mscaffold_42355654023559896
Lp0017 ------TP Ciclev10031724mscaffold_42355654023559896
Al0524 AAvailable marker OO--OOSI043,SI341TP Ciclev10031723mscaffold_4115362118025J C_unshiu_02038:mRNA_4.1C_unshiu_020383425638775Hypothetical proteinAGI-075.972JtR-0776.060RP-0774.381
Cp0233 ------TP Ciclev10031694mscaffold_41121087911216325J C_unshiu_00061:mRNA_64.1C_unshiu_00061550725556167Ribose-phosphate pyrophosphokinase 4AGI-0737.826
Af1265 ------TP Ciclev10031646mscaffold_42278910422792252
Tf0156 ------TP Ciclev10031622mscaffold_42502735725030551
Af1438 ------TP Ciclev10031620mscaffold_4642157644823
Af1088 O-----TP Ciclev10031611mscaffold_41717111417174966
Tf0310 ------TP Ciclev10031598mscaffold_41968188419685929J C_unshiu_00099:mRNA_27.1C_unshiu_00099233334237357NAC domain-containing protein 8AGI-0754.869
Af1663 ------TP Ciclev10031595mscaffold_42184132121845493
Af1541 ------TP Ciclev10031567mscaffold_41051001810517939
Lp0224 ------TP Ciclev10031564mscaffold_496277609633617
Af1086 ------TP Ciclev10031563mscaffold_41051001810517939J C_unshiu_00028:mRNA_1.2C_unshiu_00028411512036AP-2 complex subunit muAGI-0541.306
Af1296 ------TP Ciclev10031556mscaffold_41913359219137895
Bf0031 O-----TP Ciclev10031547mscaffold_440775574083819J C_unshiu_00306:mRNA_12.1C_unshiu_003065170757589Chorismate synthaseAGI-0732.590RP-0719.092
Cp1584 AAvailable marker -----OTP Ciclev10031523mscaffold_4201556204527J C_unshiu_00168:mRNA_36.1C_unshiu_00168285304287905Cell division cycle 20.1, cofactor of APC complex
Af3017 ------TP Ciclev10031492mscaffold_42440184124406470J C_unshiu_00001:mRNA_224.1C_unshiu_0000114157781420221Serine/threonine-protein kinase PBS1AGI-0783.217
Al0408 O-----TP Ciclev10031487mscaffold_42373775723740513J C_unshiu_00001:mRNA_109.1C_unshiu_00001727392729266F-box/kelch-repeat protein SKIP11AGI-0775.917KmG-0713.235JtR-071.788
Af1039 ------TP Ciclev10031458mscaffold_41438114414384897
Af1302 ------TP Ciclev10031454mscaffold_41445776614462726
Al0250 ------TP Ciclev10031445mscaffold_42477075424773948
Fb0219 ------TP Ciclev10031436mscaffold_42115379121158006J C_unshiu_00010:mRNA_101.1C_unshiu_00010718703722812F-box only protein 6AGI-0346.274
Vt0017 ------TP Ciclev10031431mscaffold_42370552323709604
Cp1279 AAvailable marker ----OOTP Ciclev10031414mscaffold_41290077712903692J C_unshiu_00461:mRNA_17.1C_unshiu_00461144878147555Ornithine aminotransferaseAGI-0740.184
Vt0027 ------TP Ciclev10031408mscaffold_4303399306794
Cp1201 ------TP Ciclev10031397mscaffold_41941684419420948
Af1656 ------TP Ciclev10031396mscaffold_424043532407969
Ov0105 MDisagree by Marco analysis O-----SI126,SI278TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantNAT-0736.023RP-07
Ov0105.2Ov0106.2 ------TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantAGI-0774.064KmG-0715.390JtR-075.947
Cp0057 ------TP Ciclev10031335mscaffold_42422770324230754J C_unshiu_00001:mRNA_187.1C_unshiu_0000112443531247404DUF1336 family proteinAGI-0779.269
Af1505 ------TP Ciclev10031326mscaffold_415312621535758J C_unshiu_00012:mRNA_96.1C_unshiu_00012704342708725Multiple inositol polyphosphate phosphatase 1AGI-0712.283
Mf0034 OOthers O-----TP Ciclev10031304mscaffold_415594901563887J C_unshiu_00012:mRNA_100.1C_unshiu_00012732963736971DEAD-box ATP-dependent RNA helicase 27RP-0773.631
Af1279 ------TP Ciclev10031302mscaffold_41451078714516311
Af1464 ------TP Ciclev10031253mscaffold_432268683232418
Ov0505 AAvailable marker -----OTP Ciclev10031252mscaffold_41662633816629094J C_unshiu_00250:mRNA_14.1C_unshiu_002508257384397Tyrosine decarboxylaseKmG-0753.887JtR-0748.672NAT-073.814
Ov0506Ov0505.2 ------TP Ciclev10031252mscaffold_41662633816629094
Ov0010 ------TP Ciclev10031252mscaffold_41662633816629094
Ov0016 ------TP Ciclev10031252mscaffold_41662633816629094
Af1238 ------TP Ciclev10031252mscaffold_41662633816629094
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Cp0061 O-----TP Ciclev10031220mscaffold_42257731722582276
Bf0017 ------TP Ciclev10031215mscaffold_421311582133384
If0204 ------TP Ciclev10031206mscaffold_42343199223438280
Bf0232 ------TP Ciclev10031191mscaffold_42186177421865635J C_unshiu_01346:mRNA_3.1C_unshiu_013461820622054T-complex protein 1 subunit deltaAGI-0767.250RP-076.705
Cp0088 O-----TP Ciclev10031190mscaffold_42390818923912723
Tf0107 ------TP Ciclev10031190mscaffold_42390818923912723
Tf0424 ------TP Ciclev10031190mscaffold_42390818923912723J C_unshiu_00001:mRNA_134.1C_unshiu_00001904872908655ApyraseAGI-0777.041
Af1492 ------TP Ciclev10031173mscaffold_42336541823370600
Cp1369 ------TP Ciclev10031159mscaffold_42473705024741836
Af1447 ------TP Ciclev10031155mscaffold_42280299522807340J C_unshiu_00004:mRNA_35.1C_unshiu_00004275820279748Aldehyde dehydrogenaseAGI-0770.744
Tf0076 ------SI266TP Ciclev10031150mscaffold_472001357204232J C_unshiu_00013:mRNA_63.3C_unshiu_00013459064463137NAC domain-containing protein 78AGI-0738.565
Tf0090 AAvailable marker O----OTP Ciclev10031135mscaffold_41651904616521918J C_unshiu_00086:mRNA_45.1C_unshiu_00086374812377677Transcription factor bHLH62
Cp1008 ------TP Ciclev10031135mscaffold_41651904616521918
Tf0087 ------SI166,SI271,SI287TP Ciclev10031120mscaffold_41141233111417624J C_unshiu_00019:mRNA_18.1C_unshiu_00019190344195992Two-component response regulator-like APRR2AGI-0735.897
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Tf0112 O-----TP Ciclev10031118mscaffold_41701458217026325J C_unshiu_00225:mRNA_9.1C_unshiu_002253709044898Regulation of nuclear pre-mRNA domain-containing protein 1BAGI-0743.014
Tf0426 ------TP Ciclev10031118mscaffold_41701458217026325
Bf0216 ------TP Ciclev10031058mscaffold_41505892015066775
Gn0062.2 OOthers ------TP Ciclev10031039mscaffold_42550644625511133
Gn0071 Bno homozygous cultivar with minor allele O-----SI363TP Ciclev10031039mscaffold_42550644625511133J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0786.113
Af1163 ------TP Ciclev10031039mscaffold_42550644625511133
Cp0059 O-----TP Ciclev10031015mscaffold_42307572823081009J C_unshiu_00001:mRNA_13.1C_unshiu_000018982896147Protein NLRC3AGI-0886.856
Gn0061.2 MDisagree by Marco analysis O-----TP Ciclev10031014mscaffold_42550060125505812J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0620.248
Gn0070 ------TP Ciclev10031014mscaffold_42550060125505812
Cp1796 ------TP Ciclev10031010mscaffold_410588251062698
Bf0021 O-----TP Ciclev10031010mscaffold_410588251062698J C_unshiu_00012:mRNA_26.1C_unshiu_00012227838231495Anthranilate synthase component IRP-0752.587
Tf0167 ------SI230,SI241,SI247TP Ciclev10030998mscaffold_41714335017147918J C_unshiu_00478:mRNA_2.1C_unshiu_004781923227824Sigma factorAGI-0746.244
Lp0234 ------TP Ciclev10030998mscaffold_41714335017147918
Af1035 O-----TP Ciclev10030982mscaffold_42346918423472872
Gn0018 ------TP Ciclev10030969mscaffold_450535405061039J C_unshiu_00616:mRNA_15.1C_unshiu_0061699349106841V-type H+-transporting ATPase subunit AAGI-0884.345KmG-0216.986
Lp0212 O-----TP Ciclev10030930mscaffold_42269705622699336J C_unshiu_00004:mRNA_48.1C_unshiu_00004381547383756Polygalacturonase 1 beta-like protein 3AGI-0769.544
Tf0248 ------TP Ciclev10030929mscaffold_41521652715221460
Ov0129Ov0129.k ------TP Ciclev10030928mscaffold_427170142719856
Lp0107 ------TP Ciclev10030913mscaffold_42191659221922770
Cp0457 ------TP Ciclev10030910mscaffold_42225318922257152
Cp1278 ------TP Ciclev10030907mscaffold_41226375512266130
Lp0026 ------TP Ciclev10030880mscaffold_433232093331825
Cp0481 ------TP Ciclev10030851mscaffold_469706246975096
Af1295 ------TP Ciclev10030829mscaffold_434680833477274
Af1614 ------TP Ciclev10030819mscaffold_4204633209475
Af1277 ------TP Ciclev10030804mscaffold_42381151123814763
Bf0032 O-----TP Ciclev10030771mscaffold_453789835392182
Cp2117 ------TP Ciclev10030756mscaffold_41451078714515793
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Tf0065 ------SI142TP Ciclev10030696mscaffold_41394579513951313J C_unshiu_00357:mRNA_3.1C_unshiu_003573518939739Auxin response factorAGI-0741.876
Tf0105 ------TP Ciclev10030696mscaffold_41394579513951313
Tf0171 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0023.2 ------TP Ciclev10030688mscaffold_42546662925472365
Lp0106 ------TP Ciclev10030683mscaffold_42286897822880751
Cp0452 AAvailable marker ----OOTP Ciclev10030661mscaffold_42357539923582495J C_unshiu_00001:mRNA_85.1C_unshiu_00001566935573821Alpha-amylase-like 3 isoform 1AGI-0775.350
Cp0675 AAvailable marker O---OOTP Ciclev10030633mscaffold_42029424020301426J C_unshiu_00015:mRNA_33.1C_unshiu_00015302440309360DNA-directed RNA polymeraseAGI-0759.793
Lp0232 O-----TP Ciclev10030590mscaffold_42112013521127140J C_unshiu_00010:mRNA_105.1C_unshiu_00010751317757205CHASE-domain containing histidine kinase 1RP-0719.079
Tf0213 OOthers O-----TP Ciclev10030571mscaffold_41883954618848948J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putativeAGI-0748.581
Cp0454 ------TP Ciclev10030551mscaffold_42320093623206254J C_unshiu_00001:mRNA_32.1C_unshiu_00001214996218740DEAD-box ATP-dependent RNA helicase ISE2, chloroplasticAGI-0773.034
Al0006 ------TP Ciclev10030549mscaffold_428232002830227
Bf0007 ------TP Ciclev10030544mscaffold_41994742919954736
Tf0212 ------SI196TP Ciclev10030538mscaffold_41981680019825304J C_unshiu_00535:mRNA_20.1C_unshiu_00535166525174142Putative nuclear matrix constituent protein 1-like proteinAGI-0756.586
Tf0390 ------TP Ciclev10030538mscaffold_41981680019825304
Tf0422 ------TP Ciclev10030538mscaffold_41981680019825304
Fb0322 O-----TP Ciclev10030532mscaffold_432497103254808J C_unshiu_00342:mRNA_35.1C_unshiu_00342217525222590Splicing factor 3B subunit 3AGI-0714.580JtR-0764.384RP-0747.636
Af1399 ------TP Ciclev10030527mscaffold_41993195819937465
Tf0266 ------TP Ciclev10030510mscaffold_41845675118473188
Tf0303 ------SI082TP Ciclev10030491mscaffold_463251806334300J C_unshiu_00210:mRNA_10.1C_unshiu_002105214860690Putative lysine-specific demethylase ELF6
Fb1134.2 ------TP Ciclev10030474mscaffold_495477079559498J C_unshiu_00140:mRNA_14.1C_unshiu_00140164689176715DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5AGI-0738.546
Tf0235 MDisagree by Marco analysis O--O--TP Ciclev10030472mscaffold_41705765817074755J C_unshiu_00225:mRNA_13.1C_unshiu_002257570696678TATA-binding protein-associated factor 172AGI-0743.879
Af1591 ------TP Ciclev10030412mscaffold_82367483323676979
Af1398 ------TP Ciclev10030393mscaffold_878993767902959J C_unshiu_00887:mRNA_6.1C_unshiu_008874912057547Hypothetical proteinAGI-0857.551
Tf0195 MDisagree by Marco analysis O-----TP Ciclev10030351mscaffold_86799774191J C_unshiu_01137:mRNA_4.1C_unshiu_011373083736569AT-rich interactive domain-containing protein 3AGI-0887.683
Tf0200 O-----TP Ciclev10030297mscaffold_82109556921102194
Ov0324 AAvailable marker -----OTP Ciclev10030198mscaffold_82257584522578398J C_unshiu_01619:mRNA_6.1C_unshiu_016191513924519Hypothetical proteinKmG-0823.615
Tf0014.2 ------TP Ciclev10030185mscaffold_82497631524979483J C_unshiu_00271:mRNA_9.1C_unshiu_002715632561820Transcription factorAGI-08
Fb2130 ------SI069,SI117TP Ciclev10030030mscaffold_82434112924344795J C_unshiu_00021:mRNA_68.1C_unshiu_00021452003461315Hypothetical proteinAGI-0811.809KmG-0811.813
Al0515 Bno homozygous cultivar with minor allele O-----SI178TP Ciclev10030023mscaffold_826731352674232J C_unshiu_00152:mRNA_38.1C_unshiu_00152273851275034DNA-damage-repair/toleration protein DRT100AGI-0873.663JtR-0814.154NAT-08110.596
Fb0221 ------TP Ciclev10029932mscaffold_887564428760308
Tf0246 ------TP Ciclev10029834mscaffold_857189135719431
Af1354 ------TP Ciclev10029831mscaffold_82134894721352692
Lp0038 ------TP Ciclev10029808mscaffold_866866026688894
Al0521 ------TP Ciclev10029787mscaffold_82313675323137537
Vt0014 ------TP Ciclev10029694mscaffold_82110297921105476
Af1281 ------TP Ciclev10029683mscaffold_82036663720367616
Fb0246 ------TP Ciclev10029680mscaffold_824034922406922J C_unshiu_00363:mRNA_27.1C_unshiu_00363170901174318Hypothetical proteinAGI-0880.078
Af1204 ------TP Ciclev10029631mscaffold_82409720624099101
Af2786 ------TP Ciclev10029628mscaffold_82054718020549390
Af1486 ------TP Ciclev10029576mscaffold_81751092617513265J C_unshiu_00962:mRNA_1.1C_unshiu_009624342684Prefoldin subunit 4AGI-0859.562
Af1575 ------TP Ciclev10029551mscaffold_81752483517526697J C_unshiu_02252:mRNA_4.1C_unshiu_0225279979032Photosystem II reaction center W proteinAGI-0856.724
Gn0058 ------TP Ciclev10029531mscaffold_81129775411299510J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0859.107
Mf0024Mf0023.2 ------TP Ciclev10029499mscaffold_81954654119549348
Cp0703 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinAGI-0843.089
Al0018 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinRP-0823.447
Af1290 ------TP Ciclev10029472mscaffold_82441315724415621
Af1305 ------TP Ciclev10029439mscaffold_81976007719761961
Al0411 AAvailable marker O---OOTP Ciclev10029439mscaffold_81976007719761961J C_unshiu_00011:mRNA_19.2C_unshiu_00011188649189649Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0840.857
Ov0314 AAvailable marker O---OOSI107TP Ciclev10029386mscaffold_881763718177435J C_unshiu_00728:mRNA_1.1C_unshiu_0072840704922Mannan polymerase complex subunit mnn9AGI-0856.724KmG-0858.356JtR-0821.829RP-0841.217
Af1169b ------TP Ciclev10029381mscaffold_82237515322376849
Af1518 ------TP Ciclev10029379mscaffold_82191921521923184
Lp0228 ------TP Ciclev10029373mscaffold_851594285162015
Af1118 ------TP Ciclev10029373mscaffold_851594285162015
Af0017 ------TP Ciclev10029358mscaffold_8313112317158
Lp0127 ------TP Ciclev10029357mscaffold_82137401921379609
Tf0325 OOthers O-----TP Ciclev10029355mscaffold_867004416703748J C_unshiu_02974:mRNA_2.1C_unshiu_029741014213418B-box type zinc finger family proteinAGI-0857.386
Wy0019 ------SI031TP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2
Tf0290 AAvailable marker O---OOTP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2AGI-0857.802
Cp0696 ------TP Ciclev10029354mscaffold_81806476118071003
Af1200 ------TP Ciclev10029354mscaffold_81806476118071003
Tf0440 ------TP Ciclev10029354mscaffold_81806476118071003
Af1454 ------TP Ciclev10029330mscaffold_81881310618814838
Tf0295 ------TP Ciclev10029316mscaffold_820123292014782
Edw002 ------TP Ciclev10029316mscaffold_820123292014782J C_unshiu_00024:mRNA_48.2C_unshiu_00024335678337129LIM transcription factorAGI-0877.720
Al0324 MDisagree by Marco analysis ------TP Ciclev10029315mscaffold_82042428720425903J C_unshiu_00320:mRNA_1.2C_unshiu_003201275814314Hypothetical proteinAGI-0841.127NAT-08231.019RP-0817.081
Al0303 ------TP Ciclev10029291mscaffold_82443106424433341
Af1352 ------TP Ciclev10029282mscaffold_81111325911117344
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Tf0445 ------TP Ciclev10029260mscaffold_860650926068908
Tf0355 ------TP Ciclev10029260mscaffold_860650926068908
Af1650 ------TP Ciclev10029248mscaffold_81927255119276355
Bf0219 ------TP Ciclev10029243mscaffold_82485146224854925
Cp0739 ------TP Ciclev10029243mscaffold_82485146224854925
Af1140 ------TP Ciclev10029224mscaffold_813369071339200
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1555 ------TP Ciclev10029189mscaffold_82450207024504031
Tf0442 ------TP Ciclev10029160mscaffold_82315829223161424
Tf0312 ------TP Ciclev10029160mscaffold_82315829223161424
Cp2198 ------TP Ciclev10029160mscaffold_82315829223161424
Af1416 ------TP Ciclev10029140mscaffold_837386073741747J C_unshiu_00589:mRNA_10.1C_unshiu_00589131180134227Embryo defective 1273, putative isoform 1AGI-0868.834
Af1208 ------TP Ciclev10029134mscaffold_82303629123037524J C_unshiu_02220:mRNA_1.1C_unshiu_022201198213216Tonoplast intrinsic proteinAGI-0817.057
Cp0705 ------TP Ciclev10029127mscaffold_82007972020084101
Cp0103 ------TP Ciclev10029116mscaffold_81604553516047020
Ov0424 ------TP Ciclev10029115mscaffold_82348048323484398
Al0012 ------TP Ciclev10029110mscaffold_853247925326835
Al0013Al0012.2 ------TP Ciclev10029110mscaffold_853247925326835
Cp0605 ------TP Ciclev10029105mscaffold_826276832630058
Af1491b ------TP Ciclev10029091mscaffold_82177798121780912
Af1154 ------TP Ciclev10029070mscaffold_82414398824146294
Gn0086.9 MDisagree by Marco analysis ------TP Ciclev10029066mscaffold_863172056322458
Bf0115 O-----SI054,SI295TP Ciclev10029066mscaffold_863172056322458J C_unshiu_00484:mRNA_11.3C_unshiu_004844821654250Squalene synthaseAGI-0858.587NAT-08117.717
Tf0356 ------SI134,SI160TP Ciclev10029063mscaffold_89982891001763J C_unshiu_00041:mRNA_95.3C_unshiu_00041588335591780Basic-leucine zipper (BZIP) transcription factor familyAGI-0883.743
Ov0520 OOthers O-----TP Ciclev10029053mscaffold_847123934713689J C_unshiu_00438:mRNA_3.1C_unshiu_004383434335619BURP domain-containing proteinAGI-0833.144JtR-0826.748
Af1402 ------TP Ciclev10029042mscaffold_878919257895996
Tf0129 ------TP Ciclev10029032mscaffold_81928817719290093
Tf0444 ------TP Ciclev10029022mscaffold_81057467310578797
Tf0336 ------TP Ciclev10029022mscaffold_81057467310578797J C_unshiu_02599:mRNA_1.1C_unshiu_025991036214310NAD(P)-linked oxidoreductase superfamily proteinAGI-0854.304
Cp0603 MDisagree by Marco analysis O-----TP Ciclev10028998mscaffold_823496552354496J C_unshiu_00363:mRNA_34.1C_unshiu_00363217631222409Hop-interacting protein THI043AGI-0875.684
Cp2188 AAvailable marker ----OOTP Ciclev10028997mscaffold_82466672924669708J C_unshiu_00021:mRNA_116.1C_unshiu_00021778469782836Phytol kinaseAGI-082.186
Cp0297 ------TP Ciclev10028989mscaffold_821354452138606J C_unshiu_00024:mRNA_26.2C_unshiu_00024197656201866ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0878.209
Af1686 ------TP Ciclev10028970mscaffold_823927632395622
Al0035 ------TP Ciclev10028970mscaffold_823927632395622
Wy0039 AAvailable marker ----OOTP Ciclev10028965mscaffold_81882426218825514J C_unshiu_00459:mRNA_4.1C_unshiu_004593447534918Hypothetical proteinAGI-0845.276JtR-0816.276
Fb1784 ------TP Ciclev10028959mscaffold_8445469446936J C_unshiu_02466:mRNA_2.1C_unshiu_0246625974055Class I chitinaseRP-0552.311
Ov0108 ------TP Ciclev10028959mscaffold_8445469446936
Tf0308 ------TP Ciclev10028926mscaffold_819936591996827
Tf0229 ------TP Ciclev10028910mscaffold_82424876724251495
Tf0408 ------TP Ciclev10028910mscaffold_82424876724251495
Af1117 ------TP Ciclev10028909mscaffold_81256310212564623
Tf0047 ------TP Ciclev10028908mscaffold_810637111065289
Af1156 ------TP Ciclev10028887mscaffold_869016306904625
Lp0116 Bno homozygous cultivar with minor allele ------TP Ciclev10028879mscaffold_81939729419398741J C_unshiu_02034:mRNA_3.1C_unshiu_0203475738901DUF3049 family proteinJtR-0818.207NAT-0547.659
Tf0155 ------TP Ciclev10028860mscaffold_864741956475882
Tf0250 AAvailable marker O---OOTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-AAGI-0873.105
Tf0431 AAvailable marker O----OTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-A
Af1113 ------TP Ciclev10028842mscaffold_813761231378446
Af1588 ------TP Ciclev10028841mscaffold_867505036754741
Mf0079 AAvailable marker O---OOSI067TP Ciclev10028839mscaffold_82472193724724569J C_unshiu_00984:mRNA_8.1C_unshiu_009845567658212Cinnamoyl CoA reductaseAGI-083.409KmG-08NAT-082
Af1373 ------TP Ciclev10028814mscaffold_814007551404988
Tf0096 O-----TP Ciclev10028804mscaffold_82136937321370728J C_unshiu_00784:mRNA_1.1C_unshiu_007842971652Transcription factor RAX3AGI-0834.042
Lg2004 ------TP Ciclev10028785mscaffold_825997172602090J C_unshiu_00152:mRNA_53.1C_unshiu_00152347645349890Cinnamyl alcohol dehydrogenaseAGI-0876.045
Tf0144 ------SI125,SI189,SI192TP Ciclev10028782mscaffold_880090008012045J C_unshiu_00682:mRNA_12.1C_unshiu_006828633489311Transcription factor bHLH121AGI-0856.439
Lp0115 ------TP Ciclev10028775mscaffold_81780942817813065
Al0632 HDisagree on Clementine haploid genotype O-----TP Ciclev10028775mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeAGI-0856.724JtR-0818.952
Tf0316 ------TP Ciclev10028732mscaffold_838942663897671
Al0205 ------TP Ciclev10028714mscaffold_8324145327011
Al0610 ------TP Ciclev10028696mscaffold_82388510323890220
Cp2190 Bno homozygous cultivar with minor allele ------TP Ciclev10028681mscaffold_82441658224418982J C_unshiu_00021:mRNA_82.1C_unshiu_00021526890529253Kinase PfkBAGI-0813.780
Af1098 ------TP Ciclev10028668mscaffold_8356241360220
Al0315 ------TP Ciclev10028656mscaffold_849053414909930
Cp1697 AAvailable marker ----OOTP Ciclev10028645mscaffold_8966124968846J C_unshiu_00041:mRNA_89.1C_unshiu_00041555334558046Urease accessory protein UreHAGI-0273.770
Al0256 ------TP Ciclev10028637mscaffold_81953813819541255
Af1501 ------TP Ciclev10028637mscaffold_81953813819541255
Lp0018 ------TP Ciclev10028637mscaffold_81953813819541255
Lp0119 AAvailable marker ----OOSI276TP Ciclev10028631mscaffold_82431572024317671J C_unshiu_00021:mRNA_65.1C_unshiu_00021426040431920Hypothetical proteinAGI-088.544
Lp0016 ------TP Ciclev10028621mscaffold_82060777420611605
Af1110 ------TP Ciclev10028599mscaffold_896568659660001J C_unshiu_01425:mRNA_1.1C_unshiu_014253335522N-carbamoylputrescine amidaseAGI-0856.690
Af1089 ------TP Ciclev10028589mscaffold_860689446075685
Cp0451 ------TP Ciclev10028586mscaffold_8232123235806
Bf0019 ------TP Ciclev10028586mscaffold_8232123235806J C_unshiu_00376:mRNA_8.1C_unshiu_003767247476027Putative serine/threonine-protein kinase Cx32RP-04
Af1425 ------TP Ciclev10028562mscaffold_8994687998018
Tf0223 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0399 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0429 ------TP Ciclev10028561mscaffold_82377430923780334
Tf0299 ------TP Ciclev10028534mscaffold_813168791320611
Af1487 ------TP Ciclev10028531mscaffold_81815548118157658J C_unshiu_00251:mRNA_22.1C_unshiu_00251205180207288DnaJAGI-0847.330
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Tf0346 ------TP Ciclev10028485mscaffold_82498753924993295
Al0248 ------TP Ciclev10028483mscaffold_81977979519784134
Wy0015 O-----SI041TP Ciclev10028465mscaffold_81310125713103161J C_unshiu_02878:mRNA_1.1C_unshiu_02878919910715UDP-glycosyltransferase 73C5AGI-0856.724
Lp0201 ------TP Ciclev10028459mscaffold_82336548123369843
Cp2194 ------TP Ciclev10028458mscaffold_82376805223771625
Al0416 OOthers ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00639:mRNA_12.1C_unshiu_006399069899467Elongation factor 1-alphaAGI-0823.023JtR-0760.405NAT-08221.126
Ov0018 ULess informative for main cultivars ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00082:mRNA_34.1C_unshiu_00082267163269630Elongation factor 1-alpha
Af1468 ------TP Ciclev10028417mscaffold_82325704323262019
Cp0719 ------TP Ciclev10028417mscaffold_82325704323262019J C_unshiu_02393:mRNA_2.1C_unshiu_023931863723537Inner membrane protein ALBINO3AGI-0812.793
Cp1694 ------TP Ciclev10028384mscaffold_842921804295696
Af1697 ------TP Ciclev10028382mscaffold_814245511429767
Cp0601 ------TP Ciclev10028382mscaffold_814245511429767
Af1423 ------TP Ciclev10028376mscaffold_82483265324835113
Gn0049 ------TP Ciclev10028366mscaffold_816044601606311J C_unshiu_00024:mRNA_95.1C_unshiu_00024699386701126DUF1005 family proteinAGI-0877.688JtR-0817.757
Cp0301 ------TP Ciclev10028366mscaffold_816044601606311
Ks9014 ------TP Ciclev10028359mscaffold_82035223220354410
Cp0709 ------TP Ciclev10028359mscaffold_82035223220354410
Ov0121 HDisagree on Clementine haploid genotype ------TP Ciclev10028359mscaffold_82035223220354410J C_unshiu_00320:mRNA_8.1C_unshiu_003208692988531Arogenate dehydrataseNAT-081
Ov0125 AAvailable marker ----OOTP Ciclev10028359mscaffold_82035223220354410J C_unshiu_00320:mRNA_8.1C_unshiu_003208692988531Arogenate dehydrataseAGI-0841.398
Af1409 ------TP Ciclev10028349mscaffold_818789861885505
Al0021 ------TP Ciclev10028327mscaffold_856920755697304
Ov0413 ------TP Ciclev10028322mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeKmG-0734.263
Ov0414Ov0413.2 ------TP Ciclev10028322mscaffold_81780942817813065
Bf0411 MDisagree by Marco analysis ------TP Ciclev10028317mscaffold_82186906521874083J C_unshiu_00500:mRNA_13.1C_unshiu_00500128482133656Sulfotransferase
Cp2237 AAvailable marker ----OOTP Ciclev10028314mscaffold_81319004113194829J C_unshiu_01736:mRNA_2.1C_unshiu_017361898623543Riboflavin biosynthesis protein ribBA, chloroplasticAGI-0855.965
Wy0038 ------TP Ciclev10028313mscaffold_8861284864282
Ov0025 ------TP Ciclev10028313mscaffold_8861284864282
Tf0412 ------TP Ciclev10028306mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Al0517 AAvailable marker ----OOTP Ciclev10028293mscaffold_825724392574295J C_unshiu_00363:mRNA_1.1C_unshiu_0036358927583Limonoid glucosyltransferaseAGI-0874.016JtR-0815.435
Tf0150 AAvailable marker OO-OOOSI262TP Ciclev10028292mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Bf0179 ------TP Ciclev10028278mscaffold_893832809385123
Af1275 ------TP Ciclev10028274mscaffold_81303517413037307
Wy0042Wy0042.k ------TP Ciclev10028268mscaffold_895646989566326
Wy0045Wy0045.k ------TP Ciclev10028268mscaffold_895646989566326J C_unshiu_02764:mRNA_1.1C_unshiu_0276415292654Geraniol 10-hydroxylase-like proteinAGI-0856.724
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Al0252 ------TP Ciclev10028251mscaffold_82468998924692884
Gn0033 MDisagree by Marco analysis ------TP Ciclev10028247mscaffold_825618452563605J C_unshiu_00363:mRNA_2.1C_unshiu_003631466316198Limonoid UDP-glucosyltransferase-like proteinAGI-0873.527KmG-0886.664NAT-08286.620
Gn0033.2 ------TP Ciclev10028247mscaffold_825618452563605
Gn0033.3 ------TP Ciclev10028247mscaffold_825618452563605
Gn0060.2 OOthers O-----TP Ciclev10028245mscaffold_81925962319261508
Gn0100 ------TP Ciclev10028245mscaffold_81925962319261508J C_unshiu_00814:mRNA_2.1C_unshiu_008141398715768Putative lycopene beta cyclaseAGI-0844.669
Af1193 ------TP Ciclev10028241mscaffold_82345663023459052
Fb0159 AAvailable marker O---OOSI227TP Ciclev10028241mscaffold_82345663023459052J C_unshiu_00375:mRNA_4.1C_unshiu_003752795230443O-Glycosyl hydrolases family 17 proteinAGI-0813.499KmG-089.978RP-082.327
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Lp0042 ------TP Ciclev10028234mscaffold_82134205021345004
Cp0655 ------TP Ciclev10028195mscaffold_854964245502056
Bf0180 ------TP Ciclev10028147mscaffold_82111280421117215
Cp1254 ------TP Ciclev10028147mscaffold_82111280421117215
Af1469 ------TP Ciclev10028130mscaffold_82077906920782853
Af1191 ------TP Ciclev10028098mscaffold_8180851185769
Cp1144 OOthers ------TP Ciclev10028086mscaffold_826499912655756J C_unshiu_00152:mRNA_43.1C_unshiu_00152288550294174Sodium:hydrogen antiporter 1 isoform 1AGI-0870.995
Cp0113 ------TP Ciclev10028057mscaffold_82502254825027972
Lg2001 ------TP Ciclev10028055mscaffold_826464582649562
Lg2002 ------TP Ciclev10028055mscaffold_826464582649562J C_unshiu_00152:mRNA_44.1C_unshiu_00152294607297615Phosphoglycerate dehydrogenaseAGI-0869.974
Af1023 ------TP Ciclev10028042mscaffold_827196542725331
Cp0822 ------TP Ciclev10028025mscaffold_82247592222481806
Ov0008 ------TP Ciclev10028019mscaffold_81765992517664551
Af1386 ------TP Ciclev10028011mscaffold_831173373120914
Lp0226 O-----SI210TP Ciclev10027999mscaffold_828318322837109J C_unshiu_00152:mRNA_19.1C_unshiu_00152138714144356Embryonic polyadenylate-binding proteinAGI-0873.527
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Tf0228 ------TP Ciclev10027952mscaffold_860258026031497
Tf0405 ------TP Ciclev10027952mscaffold_860258026031497J C_unshiu_00220:mRNA_2.1C_unshiu_002204814853214BEL1-like homeodomain protein 6AGI-0861.643
Lp0031 ------TP Ciclev10027944mscaffold_82226140822266208J C_unshiu_00639:mRNA_5.1C_unshiu_006394532149901N-terminal isoform 1AGI-089.183
If0012 ------TP Ciclev10027933mscaffold_82357408023579813
Af1362 ------TP Ciclev10027931mscaffold_828889922895645J C_unshiu_00152:mRNA_9.1C_unshiu_001527256486513Hypothetical proteinAGI-0880.366
Ov0524 ------TP Ciclev10027930mscaffold_82461359724623540
Tf0345 ------SI011TP Ciclev10027918mscaffold_82224812922254029J C_unshiu_00639:mRNA_3.1C_unshiu_006393184237665Auxin response factor
Bf0145 O--O--SI272,SI327,SI368TP Ciclev10027909mscaffold_82273083922737522J C_unshiu_00158:mRNA_13.1C_unshiu_00158102548109253Pseudo-response regulator 37AGI-0820.703RP-085.775
Tf0029 ------TP Ciclev10027901mscaffold_82188737221893128J C_unshiu_00500:mRNA_16.1C_unshiu_00500147319151840Auxin response factorAGI-0827.318
Af1572 ------TP Ciclev10027884mscaffold_82208423222091205
Fb0321 MDisagree by Marco analysis O-----TP Ciclev10027873mscaffold_868344876837762J C_unshiu_00918:mRNA_1.1C_unshiu_0091850107626Arginine decarboxylase 1AGI-0856.405JtR-0825.280
Af1225 ------TP Ciclev10027859mscaffold_810943661097096
Tf0204 ------TP Ciclev10027848mscaffold_82358970223593390
Fb0202 O-----TP Ciclev10027835mscaffold_82373619723740543
Af1252 ------TP Ciclev10027813mscaffold_82420238424209439
Tf0241 Bno homozygous cultivar with minor allele O-----TP Ciclev10027798mscaffold_82210687222114471J C_unshiu_00481:mRNA_18.1C_unshiu_00481121975128680Zinc finger CCCH domain-containing protein 24AGI-0827.618
Gn0043 MDisagree by Marco analysis ---O--SI323TP Ciclev10027790mscaffold_82195312921960709J C_unshiu_02574:mRNA_1.1C_unshiu_025742470Class III homeodomain leucine zipper proteinAGI-0830.721KmG-0827.458
Tf0013 OOthers OOO-OOSI161,SI362TP Ciclev10027769mscaffold_81340861013413938J C_unshiu_01226:mRNA_1.1C_unshiu_012262055925720DNA replication licensing factor MCM2AGI-0856.123
Af1515 ------TP Ciclev10027760mscaffold_82083805320844872J C_unshiu_00883:mRNA_4.1C_unshiu_0088360978104832Argonaute 1AGI-0840.438
Lp0128 ------TP Ciclev10027734mscaffold_828488842853210
Vt0003 ------TP Ciclev10027667mscaffold_881536608174407J C_unshiu_00616:mRNA_3.1C_unshiu_006161080818470Hypothetical proteinAGI-0856.724
Cp0066 O-----TP Ciclev10027599mscaffold_758012085803835
Cp0114 ------TP Ciclev10027515mscaffold_71544626915449214J C_unshiu_01960:mRNA_1.1C_unshiu_0196014004642DS12 from 2D-PAGE of leaf protein, putativeAGI-0221.337
Cp1791 Bno homozygous cultivar with minor allele ------TP Ciclev10027428mscaffold_71160446411607028J C_unshiu_00582:mRNA_4.1C_unshiu_005821006711470NBS-LRR type disease resistance proteinAGI-0212.969
Al0638 OOthers O-----TP Ciclev10027380mscaffold_786620418665543J C_unshiu_00221:mRNA_2.1C_unshiu_00221665810157VHS domain-containing proteinKmG-0723.435JtR-0717.224NAT-0724.049
Tf0454 AAvailable marker O---OOTP Ciclev10027306mscaffold_71610872316113463J C_unshiu_00371:mRNA_10.1C_unshiu_00371121418127245GATA transcription factorAGI-0221.099
Tf0030.2 ------TP Ciclev10027306mscaffold_71610872316113463
Lp0144 ------TP Ciclev10027174mscaffold_794521149461436
Cp0135 ------TP Ciclev10027108mscaffold_7923672926367
Af1030 ------TP Ciclev10026876mscaffold_739307883932748
Af1472 ------TP Ciclev10026852mscaffold_71742086117422787
Af1210 ------TP Ciclev10026807mscaffold_72005647520058190
Ov0522 ------TP Ciclev10026806mscaffold_72005647520058190
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Fb0281 ------TP Ciclev10026802mscaffold_71378154413786811
Af1619 ------TP Ciclev10026784mscaffold_716086341610659J C_unshiu_00209:mRNA_18.2C_unshiu_00209147009148975Thioredoxin hAGI-0273.759
Af1651 ------TP Ciclev10026767mscaffold_773130067315653
Af1291 ------TP Ciclev10026757mscaffold_747794004780310
Al0520 ------TP Ciclev10026756mscaffold_783106158313304
Mf0100 O-----TP Ciclev10026756mscaffold_783106158313304
Af1562b ------TP Ciclev10026749mscaffold_715307131532413
Af1483 ------TP Ciclev10026740mscaffold_755230755524475
Al0237 ------TP Ciclev10026739mscaffold_755230755524475
Af1292 ------TP Ciclev10026736mscaffold_766773146680214
Cp0321 AAvailable marker -----OTP Ciclev10026722mscaffold_788986268899984J C_unshiu_00221:mRNA_33.1C_unshiu_00221211111214358Hypothetical protein
Af1465 ------TP Ciclev10026722mscaffold_788986268899984
Al0512 ------TP Ciclev10026719mscaffold_742807124281481
Tf0448 ------TP Ciclev10026715mscaffold_7252320254049
Al0525 OOthers O-----TP Ciclev10026706mscaffold_7252320254023J C_unshiu_00312:mRNA_20.2C_unshiu_00312114652116351High mobility group (HMG)-box proteinAGI-0138.939KmG-0141.081
Tf0160 ------TP Ciclev10026706mscaffold_7252320254023
Af1100 ------TP Ciclev10026703mscaffold_71085348710855215J C_unshiu_00451:mRNA_17.1C_unshiu_00451120744122474Ran BP2/NZF zinc finger-like superfamily protein isoform 1AGI-0213.326
Af1585 ------TP Ciclev10026687mscaffold_734623533463444
Af1601 ------TP Ciclev10026686mscaffold_742144234217517
Af1012 ------TP Ciclev10026672mscaffold_71627039416272027
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Af1620 ------TP Ciclev10026623mscaffold_72092263120924709
Cp2247 ------TP Ciclev10026623mscaffold_72092263120924709
Lp0019 MDisagree by Marco analysis ------TP Ciclev10026623mscaffold_72092263120924709J C_unshiu_00622:mRNA_2.1C_unshiu_00622286303058350S ribosomal protein L29, chloroplasticKmG-024.377JtR-02-6.938
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Cp0058 ------TP Ciclev10026609mscaffold_71853934718543298
Edp001 ------TP Ciclev10026603mscaffold_771473197149017
Tf0027 ------SI046TP Ciclev10026602mscaffold_71391168413912447J C_unshiu_00792:mRNA_11.1C_unshiu_007929233193069Ethylene-responsive transcription factor ERF003AGI-0738.916
Af1573 ------TP Ciclev10026597mscaffold_71116335911165487
Af1544 ------TP Ciclev10026596mscaffold_726229692624754
Mf0094 AAvailable marker ----OOTP Ciclev10026594mscaffold_737213753722616J C_unshiu_00169:mRNA_29.1C_unshiu_00169217948219072Maternal effect embryo arrest proteinAGI-0267.666KmG-0252.124JtR-0225.334
Af1485a ------TP Ciclev10026552mscaffold_713817611382875
Lp0024 HDisagree on Clementine haploid genotype O-----SI010,SI302TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QAGI-0274.555RP-02.217.330
Lp0122 MDisagree by Marco analysis O-----SI170TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QNAT-02S69.942RP-02.217.330
Af1228 ------TP Ciclev10026542mscaffold_783179788319191
Af1126 ------TP Ciclev10026538mscaffold_72065609920658251
Af1480 ------TP Ciclev10026531mscaffold_7782313784526
Fb0279 ------TP Ciclev10026511mscaffold_725909032593347
Tf0260 ------TP Ciclev10026457mscaffold_751738465179864
Tf0434 ------TP Ciclev10026455mscaffold_751738465179562
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Tf0002.2 ------TP Ciclev10026433mscaffold_715078041510299
Lp0002 ------TP Ciclev10026427mscaffold_755756235577458
Tf0020 ------SI154TP Ciclev10026414mscaffold_722894552291216J C_unshiu_00025:mRNA_31.1C_unshiu_00025258446260200Homeobox leucine zipper proteinAGI-0271.294
Lp0105 Bno homozygous cultivar with minor allele O-----SI113,SI163,SI254TP Ciclev10026412mscaffold_7815904817239J C_unshiu_00353:mRNA_13.1C_unshiu_003539203393437Hypothetical proteinAGI-0275.939
Tf0172 O-----TP Ciclev10026400mscaffold_799766219980176J C_unshiu_00496:mRNA_5.1C_unshiu_004964806950951Auxin-induced protein IAA6AGI-0210.638
Tf0024.2 ------TP Ciclev10026400mscaffold_799766219980176
Fb0365 O-----SI036,SI320TP Ciclev10026391mscaffold_72087246220874659J C_unshiu_00098:mRNA_41.1C_unshiu_00098264947272086Hypothetical proteinAGI-0231.596KmG-02JtR-02-4.953
Tf0238 ------SI114TP Ciclev10026387mscaffold_7551893553909J C_unshiu_01559:mRNA_5.1C_unshiu_015592403534006Receptor-like protein kinase THESEUS 1
Cp1688 ------TP Ciclev10026380mscaffold_734561053460607
Af1532 ------TP Ciclev10026374mscaffold_739883663989679
Al0239 Bno homozygous cultivar with minor allele ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putative
Af3023 ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putativeAGI-0221.337
Af1379 ------TP Ciclev10026357mscaffold_734561053460607J C_unshiu_00301:mRNA_21.2C_unshiu_00301134429138770CBS domain-containing protein CBSX1, chloroplasticAGI-0268.467
Af1514 ------TP Ciclev10026347mscaffold_71120396711205525
Lp0108 AAvailable marker -----OTP Ciclev10026340mscaffold_755546195556993J C_unshiu_00761:mRNA_5.1C_unshiu_00761187042107240S ribosomal protein S6KmG-0241.508JtR-0218.351
Af1584 ------TP Ciclev10026332mscaffold_71742421817426071
Tf0319 ------SI152TP Ciclev10026319mscaffold_768726666877291J C_unshiu_00166:mRNA_10.1C_unshiu_001667878083374Putative PHD finger protein ALFIN-LIKE 4-likeAGI-0244.258
Wy0034 ------SI367TP Ciclev10026310mscaffold_722996382302863J C_unshiu_00025:mRNA_32.1C_unshiu_00025269762270443Flavoprotein wrbA
If0010 AAvailable marker O---O-TP Ciclev10026308mscaffold_712649651266960J C_unshiu_00218:mRNA_11.1C_unshiu_00218634036501860S ribosomal protein L8AGI-0273.759KmG-0276.687JtR-0210.849NAT-02S71.041
Cp1716 AAvailable marker ----OOTP Ciclev10026303mscaffold_726076702609433J C_unshiu_00025:mRNA_77.1C_unshiu_00025553145554831Thiol disulfide interchange proteinAGI-0270.068
Af1435 ------TP Ciclev10026292mscaffold_757476045748976
Bf0406 ------TP Ciclev10026290mscaffold_71577309115776242
Tf0231 ------TP Ciclev10026262mscaffold_767603116763833
Al0037 ------TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0037.2Al0037.k O-----TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Af1235 ------TP Ciclev10026233mscaffold_71721289517215557
Af1194 ------TP Ciclev10026223mscaffold_782550468256442
Ov0015 OOthers O-----SI304TP Ciclev10026223mscaffold_782550468256442J C_unshiu_02827:mRNA_2.1C_unshiu_028271598617224Stem 28 kDa glycoproteinAGI-0234.494KmG-0235.126JtR-0219.319
Ov0306 OOthers ------SI382TP Ciclev10026199mscaffold_7224443227133NoAGI-0279.663KmG-0272.516JtR-028.671NAT-02S60.000
Tf0362 ------SI062TP Ciclev10026199mscaffold_7224443227133J C_unshiu_02579:mRNA_3.1C_unshiu_025791322815002WUSCHEL-related homeobox 13
Tf0139 ------TP Ciclev10026199mscaffold_7224443227133
Tf0025.2 ------TP Ciclev10026197mscaffold_745130374514995
Al0232 ------TP Ciclev10026186mscaffold_749970894999255
Cp1736 ------TP Ciclev10026179mscaffold_756400585643125J C_unshiu_00761:mRNA_15.2C_unshiu_007618999192755Protein CbbYAGI-0250.716
Vs0018 ------TP Ciclev10026149mscaffold_746128874617115
Lp0004 OOthers ------TP Ciclev10026144mscaffold_71537681815378771J C_unshiu_00703:mRNA_1.1C_unshiu_0070327934693C6HC-type zinc finger RING/U-box proteinAGI-0220.292KmG-0215.368RP-0211.119
Al0212 O-----TP Ciclev10026128mscaffold_752580455259521J C_unshiu_00288:mRNA_19.1C_unshiu_00288142758144183Mitochondrial uncoupling protein 3KmG-0243.821JtR-0230.507RP-08
Cp2262 AAvailable marker -----OTP Ciclev10026121mscaffold_718709331874304J C_unshiu_00289:mRNA_20.1C_unshiu_00289113542116894Galactose mutarotase-like superfamily protein
Al0410 ------TP Ciclev10026113mscaffold_777397827742295
Lp0040 Bno homozygous cultivar with minor allele ------TP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorKmG-0252.181JtR-0225.334
Tf0259 AAvailable marker O---OOTP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0267.666
Af1325 ------TP Ciclev10026096mscaffold_762874606289468
Af1043 ------TP Ciclev10026060mscaffold_72004993620052008J C_unshiu_00519:mRNA_19.1C_unshiu_00519110187111261Ribonucleoside-diphosphate reductase subunit M2AGI-0244.231
Af1230 ------TP Ciclev10026057mscaffold_7370952372493
Tf0132 ------TP Ciclev10026056mscaffold_734299643433239
Tf0046.2 ------TP Ciclev10026046mscaffold_71330859313311348
Cp2263 AAvailable marker ----OOTP Ciclev10026034mscaffold_725863842588513J C_unshiu_00025:mRNA_69.1C_unshiu_00025530588532071Hypothetical proteinAGI-0270.082
Gn0004 ------TP Ciclev10026028mscaffold_760115236014015J C_unshiu_00696:mRNA_14.1C_unshiu_00696122646125456Flavonol synthaseAGI-0249.699KmG-0238.471JtR-0215.126
Tf0032 AAvailable marker O---OOTP Ciclev10026014mscaffold_79415597631J C_unshiu_00706:mRNA_8.1C_unshiu_007065152554837AT-hook motif nuclear-localized protein 10AGI-0278.531
Fb0227 ------TP Ciclev10026002mscaffold_729380592940407J C_unshiu_00084:mRNA_42.1C_unshiu_00084428180435326Phospholipase, patatin familyAGI-0270.082RP-02.212.696
Tf0221 ------SI057,SI225TP Ciclev10025996mscaffold_7490750492882J C_unshiu_00488:mRNA_7.1C_unshiu_004884481348259Ankyrin repeat domain-containing protein, chloroplasticAGI-0281.212
Tf0398 ------TP Ciclev10025996mscaffold_7490750492882
Af1460 ------TP Ciclev10025995mscaffold_787122538715371
Tf0201 O-----SI195TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1
Gmom23 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1KmG-0220.942
Gmom24 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1AGI-0219.971
Cp0313 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0379 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0126 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0415 ------TP Ciclev10025985mscaffold_71518295015186486
Tf0269 ------TP Ciclev10025970mscaffold_722740682279911
Vt0015 ------TP Ciclev10025952mscaffold_724414522443391J C_unshiu_00025:mRNA_49.1C_unshiu_00025381829383760HexosyltransferaseAGI-0270.082KmG-0267.054JtR-0221.082
Tf0067 OOthers O-----SI033,SI187TP Ciclev10025950mscaffold_784387028442381J C_unshiu_00290:mRNA_9.1C_unshiu_002907419477624Transcription factorAGI-025.104
Cp1738 AAvailable marker -----OSI237,SI296TP Ciclev10025941mscaffold_753884585389981J C_unshiu_00303:mRNA_12.1C_unshiu_00303100918102276Putative clathrin assembly protein
Cp1085 ------TP Ciclev10025935mscaffold_723900102391658J C_unshiu_00025:mRNA_42.1C_unshiu_00025337060338142Putative geranylgeranyl pyrophosphate synthase 3-likeAGI-0270.082
Cp1086 ------TP Ciclev10025935mscaffold_723900102391658
Af1463 ------TP Ciclev10025935mscaffold_723900102391658
Vs0007 ------TP Ciclev10025931mscaffold_712071411210820
Gn0003 ------TP Ciclev10025931mscaffold_712071411210820
Af0011 ------TP Ciclev10025929mscaffold_71135799011362560
Bf0205 O-----SI236TP Ciclev10025925mscaffold_735419243543863J C_unshiu_00301:mRNA_11.1C_unshiu_003015557057462WRKY
Tf0116 ------TP Ciclev10025925mscaffold_735419243543863
Tf0427 ------TP Ciclev10025925mscaffold_735419243543863
Wy0041 ------TP Ciclev10025903mscaffold_712958391297378J C_unshiu_00218:mRNA_18.1C_unshiu_002189307494183GDP-mannose 4,6 dehydratase 2AGI-0275.406
Al0404 ------TP Ciclev10025902mscaffold_740157354020920
Af1233 ------TP Ciclev10025897mscaffold_72084194220846077
Al0621 Bno homozygous cultivar with minor allele O-----TP Ciclev10025875mscaffold_745755034577125J C_unshiu_00656:mRNA_8.1C_unshiu_006563294034329Hypothetical proteinAGI-0260.566KmG-0247.196JtR-0228.472
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Mf0090 AAvailable marker -O--OOTP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.869KmG-0211.182JtR-023.182RP-028.191
Af1694 ------TP Ciclev10025863mscaffold_727035802705194
Af1016 ------TP Ciclev10025840mscaffold_723944712397293
Wy0023 ------SI037TP Ciclev10025834mscaffold_77085573880J C_unshiu_00706:mRNA_12.1C_unshiu_007067610378923Thioredoxin-disulfide reductase
Cp1163 ------TP Ciclev10025825mscaffold_71620197116207283
Cp0318 ------TP Ciclev10025825mscaffold_71620197116207283
Cp2261 ------TP Ciclev10025819mscaffold_718056761808859
Al0620 OOthers ------TP Ciclev10025816mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinKmG-0236.964JtR-0217.013
Tf0196 ------TP Ciclev10025815mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinAGI-024.033
Af1301 ------TP Ciclev10025759mscaffold_7866845870030
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Af1308 ------TP Ciclev10025747mscaffold_71362550413630800
Af1516 ------TP Ciclev10025736mscaffold_71587223615875783
Cp1723 ------TP Ciclev10025728mscaffold_750354295038431
Ks9007 ------TP Ciclev10025724mscaffold_767471396750382
Al0210 MDisagree by Marco analysis ------TP Ciclev10025724mscaffold_767471396750382J C_unshiu_00166:mRNA_28.1C_unshiu_00166205256208771Eukaryotic initiation factor 4A-10KmG-0234.998JtR-0215.126
Af3016 ------TP Ciclev10025718mscaffold_773460317350895
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
Gn0101 ------TP Ciclev10025706mscaffold_7662802667420J C_unshiu_00353:mRNA_30.1C_unshiu_00353203269207136Protein MID1-COMPLEMENTING ACTIVITY 1AGI-0277.881
Cp1225 ------TP Ciclev10025660mscaffold_71720807517211871
Cp1701 ------TP Ciclev10025659mscaffold_7303829305426
Af1271 ------TP Ciclev10025653mscaffold_71332358313328683
Cp0661 ------TP Ciclev10025609mscaffold_756683795673913
Al0627 HDisagree on Clementine haploid genotype O-----TP Ciclev10025602mscaffold_7128539131642J C_unshiu_00706:mRNA_3.1C_unshiu_007061659018098Trigalactosyldiacylglycerol 1 isoform 1AGI-0278.531
Af1315 ------TP Ciclev10025598mscaffold_7203839207450
Af1121 ------TP Ciclev10025591mscaffold_761274646131417
Tf0280 ------SI158,SI200TP Ciclev10025566mscaffold_734299643433239J C_unshiu_00301:mRNA_24.3C_unshiu_00301159835163045Floral homeotic protein APETALA 2AGI-0554.268
Fb0233 O-----SI025,SI079,SI169TP Ciclev10025557mscaffold_765355226540965J C_unshiu_00437:mRNA_15.1C_unshiu_00437131524136642WD-40 repeat-containing protein MSI4AGI-0247.382
Al0337 ------TP Ciclev10025556mscaffold_764374066440864
Ov0004 ------TP Ciclev10025545mscaffold_72036008620363290J C_unshiu_00650:mRNA_9.1C_unshiu_006508667089289Myo-inositol-1 phosphate synthaseKmG-0217.680NAT-02S
Cp1671 ------TP Ciclev10025512mscaffold_748825204888243
Tf0125 ------TP Ciclev10025501mscaffold_71624952316255343J C_unshiu_01042:mRNA_11.1C_unshiu_010428657791963Ubiquitin-specific protease family C19 proteinAGI-0221.337
Cp1715 ------TP Ciclev10025487mscaffold_727135102717859
Bf0197 ------TP Ciclev10025476mscaffold_756543765658039
Cp1292 ------TP Ciclev10025390mscaffold_722467322249558
Tf0357 ------SI018TP Ciclev10025390mscaffold_722467322249558J C_unshiu_01055:mRNA_7.1C_unshiu_010556061463050Zinc finger protein JACKDAWAGI-0271.294
Cp1709 AAvailable marker -----OTP Ciclev10025382mscaffold_714507481452915J C_unshiu_00624:mRNA_14.1C_unshiu_00624137579139378Cytochrome P450 84A1
Tf0026 O-----SI111,SI288TP Ciclev10025369mscaffold_7285299292550J C_unshiu_00312:mRNA_28.1C_unshiu_00312151229158232UbiquilinAGI-0278.531
Af1149 ------TP Ciclev10025360mscaffold_71298595412989228J C_unshiu_02261:mRNA_2.1C_unshiu_022611915621966Glycerol kinaseAGI-0521.630
Af2893 ------TP Ciclev10025356mscaffold_717394431743149J C_unshiu_01334:mRNA_6.1C_unshiu_013342586329359Putative mitochondrial chaperone BCS1-BAGI-0273.779
Al0401 OOthers O-----TP Ciclev10025346mscaffold_71318056713191638J C_unshiu_01698:mRNA_6.1C_unshiu_016983933640206Hypothetical proteinKmG-0226.204JtR-02-6.043NAT-02S22.960
Vs0006 ULess informative for main cultivars ------TP Ciclev10025343mscaffold_71902429519026021J C_unshiu_00468:mRNA_22.1C_unshiu_00468132124133922Cytochrome P450 78A4AGI-0227.491JtR-0250.216NAT-02S3.328
Cp1719 ------TP Ciclev10025341mscaffold_739402743943841
Af1207 ------TP Ciclev10025335mscaffold_71560506515607345J C_unshiu_00628:mRNA_20.1C_unshiu_00628144683146646Flavonoid 3'-monooxygenaseAGI-0221.344
Ov0406 ------TP Ciclev10025329mscaffold_751599955165972
Vt0025 ------TP Ciclev10025308mscaffold_767646646770188
Af1507b ------TP Ciclev10025301mscaffold_72109823021102921
Bf0128 O-----TP Ciclev10025298mscaffold_733232693331038J C_unshiu_00051:mRNA_2.2C_unshiu_000512587240163Hypothetical proteinAGI-0270.082NAT-02S77.157RP-02.29.835
Wy0007 ------TP Ciclev10025280mscaffold_71545694815460803
Af1148 ------TP Ciclev10025238mscaffold_779048657908319
Af3785 ------TP Ciclev10025208mscaffold_759326645935568
Af1674 ------TP Ciclev10025184mscaffold_766398336644164
Cp0556 ------TP Ciclev10025170mscaffold_71048441310489121
Tf0358 ------SI098TP Ciclev10025169mscaffold_720490682051708No
Lp0126 AAvailable marker O---OOTP Ciclev10025164mscaffold_739468183949964J C_unshiu_00801:mRNA_10.1C_unshiu_0080197228100216Phototropic-responsive NPH3 family proteinAGI-0265.295KmG-0254.892JtR-0226.278RP-02.2
Af1083 ------TP Ciclev10025156mscaffold_71550555615510930
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Bf0204 ------SI326TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticRP-02.29.835
Gn0068 ------TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticAGI-0268.446RP-02.29.814
Gn0068.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplastic
Gn0068.3Gn0068.y OOthers ------TP Ciclev10025089mscaffold_732224833228894
Lp0037 OOthers ------TP Ciclev10025045mscaffold_71896348718968140
Fb1751 ------SI264TP Ciclev10025011mscaffold_779775277984425J C_unshiu_00121:mRNA_40.1C_unshiu_00121250743257054Protein STRUBBELIG-RECEPTOR FAMILY 8
Cp1081 ------TP Ciclev10024992mscaffold_778266037829404
Af1061 O-----TP Ciclev10024969mscaffold_760804106084393
Af1066 ------TP Ciclev10024951mscaffold_738870103890047
Al0409 Bno homozygous cultivar with minor allele O-----SI201,SI252TP Ciclev10024949mscaffold_750425085046271NoAGI-0250.758KmG-0244.930JtR-0229.462NAT-02S90.742
Vt0030Vt0030.k O-----TP Ciclev10024917mscaffold_71127170511277014J C_unshiu_01240:mRNA_4.1C_unshiu_012402765532960Phospholipase DAGI-0212.615
Ks9006 ------TP Ciclev10024917mscaffold_71127170511277014
Bf0142 O-----TP Ciclev10024891mscaffold_785088378516759J C_unshiu_00290:mRNA_16.1C_unshiu_00290151884158772Class III homeodomain leucine zipper proteinAGI-025.104
Bf0408 ------TP Ciclev10024877mscaffold_748431574848614
Cp0100 O-----TP Ciclev10024866mscaffold_71047113610474241J C_unshiu_00924:mRNA_4.1C_unshiu_009245026952902Tetratricopeptide repeat-like superfamily proteinAGI-0214.111
Cp1111 MDisagree by Marco analysis ------TP Ciclev10024860mscaffold_786034508610239J C_unshiu_00290:mRNA_28.1C_unshiu_00290241335248051Cell division protein ftsH, putative isoform 1AGI-025.054
Cte999 ------TP Ciclev10024858mscaffold_71102771211030551
Tf0120 ------TP Ciclev10024826mscaffold_733768263385936
Vt0032 O-----SI024TP Ciclev10024737mscaffold_71790148717905433J C_unshiu_00382:mRNA_15.1C_unshiu_00382163577167662Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1AGI-0225.601RP-026.081
Bf0405 ------TP Ciclev10024721mscaffold_729945253001770
Tf0326 AAvailable marker OO-OOOSI085TP Ciclev10024695mscaffold_725015202509737J C_unshiu_02417:mRNA_1.1C_unshiu_02417369211684Histone-lysine N-methyltransferase SUVR5AGI-0269.928
Fb0995 OOthers O-----SI026TP Ciclev10024677mscaffold_711800191202408J C_unshiu_00544:mRNA_10.1C_unshiu_0054497318121662FAT domain-containing proteinAGI-0274.555KmG-0282.954JtR-0210.215
Af1581 ------TP Ciclev10024663mscaffold_32709241427093612
Af1675 ------TP Ciclev10024649mscaffold_327933652795811
Mf0002 ------TP Ciclev10024637mscaffold_34169705241697860
Al0003Al0003.2 ------TP Ciclev10024637mscaffold_34169705241697860J C_unshiu_01778:mRNA_2.1C_unshiu_017782736228139Dehydrin COR15AGI-0549.499
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Gmom05 ------TP Ciclev10024623mscaffold_33372293433727855
Al0405 ------TP Ciclev10024622mscaffold_33002199830023908
Tf0186 ------TP Ciclev10024602mscaffold_353824905385009
Gn0050 ------TP Ciclev10024602mscaffold_353824905385009J C_unshiu_00014:mRNA_87.1C_unshiu_00014637698638678CRT binding factor 3AGI-0529.035KmG-05S21.884JtR-0519.008
Wy0046Wy0046.k ------TP Ciclev10024602mscaffold_353824905385009
Cp0980 ------TP Ciclev10024548mscaffold_34130777641309278
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Cp0742 ------TP Ciclev10024455mscaffold_34380128143801864
Af1400 ------TP Ciclev10024198mscaffold_33004214030047495
Af1337 ------TP Ciclev10024178mscaffold_32341957423420180
Vt0026 ------TP Ciclev10024169mscaffold_34469139544694360
Cp0026bCp0026.2 O-----TP Ciclev10024128mscaffold_34335440443355588
Cp2048 ------TP Ciclev10024054mscaffold_3807021808331
Tf0127 ------TP Ciclev10023918mscaffold_310844671086978
Af1578 ------TP Ciclev10023834mscaffold_34801606948017656
Af1685 ------TP Ciclev10023782mscaffold_34008698540089114J C_unshiu_00335:mRNA_9.1C_unshiu_003357616477436Hypothetical proteinAGI-0556.481
Cp0363 ------TP Ciclev10023762mscaffold_34651003946512543
Af1190 ------TP Ciclev10023762mscaffold_34651003946512543
Cp0190 OOthers ------TP Ciclev10023646mscaffold_31864842618650443J C_unshiu_00618:mRNA_5.1C_unshiu_006182027322297UPF0426 protein, chloroplasticAGI-0627.617
Af1647 ------TP Ciclev10023615mscaffold_34953331849539442
Cp0013 ------TP Ciclev10023436mscaffold_34483403544836704
Ov0310 ------TP Ciclev10023404mscaffold_34846339548465325J C_unshiu_00026:mRNA_46.1C_unshiu_00026334715336716Lanatoside 15-O-acetylesteraseKmG-0121.291JtR-01S61.287
Al0412 ------TP Ciclev10023374mscaffold_32561274125615635
Tf0128.2 ------TP Ciclev10023354mscaffold_31993649919941380
Tf0249 ------TP Ciclev10023300mscaffold_34579387745798206
Mf0020 ------TP Ciclev10023252mscaffold_326458452647776NoSA-0530.880
Af1470 ------TP Ciclev10023233mscaffold_34638026446381057NoAGI-0562.767
Mf0087 ------TP Ciclev10023194mscaffold_33206343032064847
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
Af1484 ------TP Ciclev10023136mscaffold_34288290942885640
Mf0068 ------TP Ciclev10023101mscaffold_327181862719011
Ov0009 ------TP Ciclev10023099mscaffold_34725756547258746
Af1453 ------TP Ciclev10023068mscaffold_346632114664667J C_unshiu_01589:mRNA_7.1C_unshiu_015892906337936Hypothetical proteinAGI-0527.956
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Cp2046 ------TP Ciclev10023047mscaffold_314653011468225
Af1553 ------TP Ciclev10023028mscaffold_34581258945815067
Ov0423 T3 or more alleleic model O-----TP Ciclev10023016mscaffold_34295436242955051J C_unshiu_00152:mRNA_28.1C_unshiu_00152189707190632Hypothetical proteinAGI-0555.522
If0203 MDisagree by Marco analysis ------TP Ciclev10022993mscaffold_34222922442231230J C_unshiu_00322:mRNA_21.1C_unshiu_00322121122123131Small ubiquitin-related modifierAGI-0551.293KmG-05S67.257JtR-0543.446
Af1159 ------TP Ciclev10022925mscaffold_327744652775592
Af1587 ------TP Ciclev10022920mscaffold_33948338739486219
Af1151 ------TP Ciclev10022903mscaffold_33660819736611090
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Af1168 ------TP Ciclev10022842mscaffold_32838962528390574
Bf0030 O-----TP Ciclev10022841mscaffold_34645289346453717J C_unshiu_00627:mRNA_10.1C_unshiu_006274521545931Calvin cycle protein CP12RP-0558.661
Su0004 ------TP Ciclev10022825mscaffold_358294595830556
Af1684 ------TP Ciclev10022811mscaffold_31290146312904143
Af1678 ------TP Ciclev10022810mscaffold_34319276243194352
Af1317 ------TP Ciclev10022803mscaffold_33593219835935023
Af1366 ------TP Ciclev10022785mscaffold_34245629942460637
Af1603 ------TP Ciclev10022774mscaffold_34297494742976794
Tf0352 ------TP Ciclev10022757mscaffold_33290402332906262
Af1496 ------TP Ciclev10022757mscaffold_33290402332906262
Af1227 ------TP Ciclev10022750mscaffold_34267204342673648
Af1192 ------TP Ciclev10022723mscaffold_33709478537098257
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Fb1567 ------TP Ciclev10022690mscaffold_35063767350640392NoAGI-05103.212
Tf0376 AAvailable marker O---OOSI072TP Ciclev10022680mscaffold_385282928529236J C_unshiu_00154:mRNA_1.1C_unshiu_00154983210761CRT binding factor 3AGI-0541.853
Af1114 ------TP Ciclev10022658mscaffold_3602713605468
Af1328 ------TP Ciclev10022653mscaffold_33983468039837971
Af1401 ------TP Ciclev10022652mscaffold_34375376343756161
Af1128 ------TP Ciclev10022649mscaffold_34950828849511063
Af1101 ------TP Ciclev10022644mscaffold_388436448845811
Af1595 ------TP Ciclev10022641mscaffold_390401819045543
Af1500 ------TP Ciclev10022594mscaffold_31695742716959735
Tf0153 AAvailable marker O---OOTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit betaAGI-0541.267
Tf0154 AAvailable marker O----OTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit beta
Wy0009 ------TP Ciclev10022580mscaffold_34862190948624858
Al0301 ------TP Ciclev10022576mscaffold_34590687945907641
Tf0028 ------SI377TP Ciclev10022572mscaffold_31978071119782241J C_unshiu_00443:mRNA_20.1C_unshiu_00443195567202424MADS-box transcription factor
Cp0278 ------TP Ciclev10022561mscaffold_32475079424752907J C_unshiu_00286:mRNA_8.1C_unshiu_002867306881236Hypothetical proteinAGI-04122.142
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Al0327Al0326.2 ------TP Ciclev10022558mscaffold_364093116411254
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1396 ------TP Ciclev10022545mscaffold_349206624923421J C_unshiu_00520:mRNA_16.2C_unshiu_00520166824167867Ribosomal protein L19 family proteinAGI-0528.041
Cp0401 ------TP Ciclev10022489mscaffold_310561161057706
Ov0126 MDisagree by Marco analysis O-----TP Ciclev10022482mscaffold_34681490946817474
Ov0127Ov0126.2 ------SI124,SI284TP Ciclev10022482mscaffold_34681490946817474J C_unshiu_00053:mRNA_57.3C_unshiu_00053477728479995ADP-ribosylation factor A1FAGI-0565.510KmG-05S81.631JtR-0545.715RP-0564.195
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Edp002 ------TP Ciclev10022479mscaffold_384864918488997
Tf0145 ------SI092TP Ciclev10022479mscaffold_384864918488997J C_unshiu_00154:mRNA_7.1C_unshiu_001544913160112Floral homeotic protein APETALA 1
Af1374 ------TP Ciclev10022450mscaffold_33909228539094629
If0218 ------TP Ciclev10022441mscaffold_3449407451690
Af1209 ------TP Ciclev10022439mscaffold_312811191281817
Af1466 ------TP Ciclev10022406mscaffold_328037852805325
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Lp0048 ------TP Ciclev10022383mscaffold_34637429246377587
Mf0058 T3 or more alleleic model ------TP Ciclev10022378mscaffold_34681881746822856J C_unshiu_00053:mRNA_58.1C_unshiu_00053481338485184Nitrogen regulatory protein P-IIAGI-0857.196JtR-0539.516
Cp1815 OOthers ------TP Ciclev10022373mscaffold_382563988257886J C_unshiu_00154:mRNA_28.1C_unshiu_00154274299275412Wiskott-Aldrich syndrome protein family member 2AGI-0551.501
Cp2223 OOthers ------TP Ciclev10022371mscaffold_334833343485637J C_unshiu_00933:mRNA_9.1C_unshiu_009338695889273Protein LATERAL ORGAN BOUNDARIESAGI-0525.049
Tf0300 AAvailable marker OO--OOTP Ciclev10022370mscaffold_34386244043863744J C_unshiu_01051:mRNA_10.1C_unshiu_010518341784406Auxin-induced protein IAA4AGI-0554.726
Tf0375 ------TP Ciclev10022365mscaffold_31303465413036082J C_unshiu_00020:mRNA_62.1C_unshiu_00020527751528816Homeobox leucine zipper proteinAGI-0540.558
Cp0500 ------TP Ciclev10022359mscaffold_322923992293655
Al0614 ------TP Ciclev10022348mscaffold_34498771944991534J C_unshiu_00069:mRNA_32.1C_unshiu_00069220620224375Methyl-CpG-binding domain 4AGI-0556.788KmG-0635.565
Bf0146 O-----TP Ciclev10022345mscaffold_34852882048531316J C_unshiu_00026:mRNA_37.1C_unshiu_00026280361282836RRNA-processing protein FCF1AGI-0578.274
Lp0111 ------TP Ciclev10022339mscaffold_33609600936099799
Tf0053 ------SI305TP Ciclev10022321mscaffold_32915342529156189J C_unshiu_01169:mRNA_3.1C_unshiu_011693914141442Peptide methionine sulfoxide reductase B5AGI-0542.265
Cp0748 ------TP Ciclev10022288mscaffold_33467345134674900J C_unshiu_00669:mRNA_14.1C_unshiu_00669103814104779Light-dependent short hypocotyls proteinAGI-0133.562
Af1219 ------TP Ciclev10022271mscaffold_34220029942203934
Cp0012 O-----TP Ciclev10022248mscaffold_34444284144444278
Af1367 ------TP Ciclev10022240mscaffold_336434423647377
Ov0309 ------TP Ciclev10022230mscaffold_380786098083078
Ov0409 ------TP Ciclev10022219mscaffold_347360474740432
Af1221 ------TP Ciclev10022216mscaffold_363291336332201
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Af1160 ------TP Ciclev10022213mscaffold_374253537428313
Mf0055 DDominant marker ----OOTP Ciclev10022212mscaffold_34555134545552620J C_unshiu_01674:mRNA_4.1C_unshiu_016741777728549Hypothetical proteinAGI-0557.948KmG-05S75.866JtR-0538.749NAT-0539.573
Mf0056.2Mf0055.2 ------TP Ciclev10022212mscaffold_34555134545552620
Af1471 ------TP Ciclev10022208mscaffold_397477759750640
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Af1543 ------TP Ciclev10022165mscaffold_34218065042183843
Bf0203 ------TP Ciclev10022162mscaffold_34241048242413511
Cp0403 ------TP Ciclev10022161mscaffold_3749176751194
Al0605 OOthers ------TP Ciclev10022151mscaffold_34143406441437122J C_unshiu_00194:mRNA_5.1C_unshiu_001943856941571Eukaryotic translation initiation factor 4EAGI-0548.750KmG-05S65.384
Cp0921 OOthers ------TP Ciclev10022149mscaffold_32544885825451858
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Wy0002 ------TP Ciclev10022129mscaffold_31847296718473951
Af2558 ------TP Ciclev10022119mscaffold_34974045449743754
Af1021 ------TP Ciclev10022113mscaffold_34066463540665640
Tf0071 ------SI084,SI146TP Ciclev10022102mscaffold_32661074726612959J C_unshiu_00167:mRNA_6.1C_unshiu_001675730062494HAUS augmin-like complex subunitAGI-0346.274
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Cp0007 ULess informative for main cultivars O-----TP Ciclev10022090mscaffold_34692469246927004
Bf0215 ------TP Ciclev10022088mscaffold_35079352050795340
Bf0177 ------SI060TP Ciclev10022075mscaffold_381866898189902J C_unshiu_00154:mRNA_43.2C_unshiu_00154341574344576Phosphoserine phosphataseAGI-0544.047
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Cp2229 AAvailable marker ----OOTP Ciclev10022058mscaffold_341174854120274J C_unshiu_00318:mRNA_6.1C_unshiu_003184437647085Nucleoside diphosphate kinaseAGI-0527.135
Af1013 ------TP Ciclev10022053mscaffold_34862190948624876
Tf0036 AAvailable marker O---OOTP Ciclev10022032mscaffold_34385026943852816J C_unshiu_01051:mRNA_11.1C_unshiu_010519436996339Auxin-responsive protein IAA14AGI-0553.260
Cp1627 AAvailable marker ----OOTP Ciclev10022024mscaffold_31330939813310636J C_unshiu_00431:mRNA_6.1C_unshiu_004314450745451Chloroplast small heat shock proteinAGI-0541.272
Al0309 AAvailable marker O----OTP Ciclev10022019mscaffold_34490005944900865J C_unshiu_00069:mRNA_47.1C_unshiu_00069301188317479Hypothetical proteinKmG-05S73.967JtR-0538.749RP-0586.332
Al0310Al0309.2 ------TP Ciclev10022019mscaffold_34490005944900865
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Mf0041 AAvailable marker ----OOTP Ciclev10022012mscaffold_34507682145080633J C_unshiu_00069:mRNA_16.1C_unshiu_00069123654127483Histidine-containing phosphotransfer protein 1AGI-0556.534KmG-05S73.977JtR-0538.393
Ov0311 ------TP Ciclev10022001mscaffold_31834116618342395J C_unshiu_00417:mRNA_9.1C_unshiu_004179342694543Kunitz trypsin inhibitorKmG-0410.598NAT-0982.730
Lp0139 ------TP Ciclev10021991mscaffold_314701631473304
Bf0156 ------TP Ciclev10021991mscaffold_314701631473304
Cp2145 ------TP Ciclev10021983mscaffold_31241333712415802
Tf0081 ------SI038,SI324TP Ciclev10021980mscaffold_33821446838216861J C_unshiu_00575:mRNA_8.1C_unshiu_005754769351431Leucine-rich repeat disease resistance protein-likeAGI-0548.590
Cp1490 ------TP Ciclev10021970mscaffold_363693986372018
Fb0130 ------TP Ciclev10021969mscaffold_3894965897547
Cp1628 ------TP Ciclev10021963mscaffold_31282291112825620J C_unshiu_02666:mRNA_2.1C_unshiu_026661010412687Rhodanese/cell cycle control phosphatase superfamily proteinAGI-0541.272
Af1188 ------TP Ciclev10021960mscaffold_356066015609366
If0222 ------TP Ciclev10021958mscaffold_365418686545524
Tf0051 ------SI027,SI214TP Ciclev10021952mscaffold_339640363966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0525.590
Af1203 ------TP Ciclev10021949mscaffold_34021931540224503
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Af1427 ------TP Ciclev10021942mscaffold_33696302636965935
Tf0317 ------SI145TP Ciclev10021941mscaffold_321068102109266J C_unshiu_00490:mRNA_19.1C_unshiu_00490159122161521Transcription factor bHLH47
Mf0080 MDisagree by Marco analysis ------TP Ciclev10021936mscaffold_34420296844205663J C_unshiu_00217:mRNA_35.1C_unshiu_00217286418288656Transmembrane BAX inhibitor motif-containing protein 4AGI-0555.049KmG-05S64.740JtR-0538.503RP-0437.046
Mf0081.2Mf0080.2 OOthers ------TP Ciclev10021936mscaffold_34420296844205663
Cp1903 ------TP Ciclev10021934mscaffold_34023138340235237
Tf0108 ------TP Ciclev10021923mscaffold_368284816829499
Wy0006 O-----TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1KmG-05S19.072JtR-0519.698NAT-0521.803
Bf0165 ------SI280TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1AGI-0529.035NAT-0523.083RP-0519.690
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Mf0017 Bno homozygous cultivar with minor allele ------TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinAGI-0544.674
Af1679 ------TP Ciclev10021896mscaffold_342601264262819J C_unshiu_00186:mRNA_34.1C_unshiu_00186288266290432Adenylate kinaseAGI-0529.035
Af1390 ------TP Ciclev10021895mscaffold_31225417712259003
Cp1533 ------TP Ciclev10021868mscaffold_348317514834270J C_unshiu_00768:mRNA_14.1C_unshiu_00768110682113065Lil3 proteinAGI-0529.039
Tf0331 ------TP Ciclev10021868mscaffold_348317514834270
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Al0335 ------TP Ciclev10021844mscaffold_361312146135849
Af1195 ------TP Ciclev10021820mscaffold_34203425542039591
Af1198 ------TP Ciclev10021819mscaffold_323196752322962
Cp1958 ------TP Ciclev10021818mscaffold_389104548913829
Mf0065 ------TP Ciclev10021816mscaffold_33292566432929662
Af1082 ------TP Ciclev10021811mscaffold_34386958343874373
Bf0118 ------TP Ciclev10021811mscaffold_34386958343874373
Vs0004 ------TP Ciclev10021761mscaffold_320786912083111J C_unshiu_00490:mRNA_23.1C_unshiu_00490182148190847Nucleosome assembly proteinKmG-0651.244
Cp1427 AAvailable marker ----OOTP Ciclev10021746mscaffold_34557686345579197J C_unshiu_00326:mRNA_5.1C_unshiu_003262307325265Bifunctional protein FolDAGI-0558.917
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Af1166 ------TP Ciclev10021716mscaffold_34157681341581730
Al0036 ------TP Ciclev10021716mscaffold_34157681341581730
Af1309 ------TP Ciclev10021713mscaffold_35064775350652010
Cp0001 O-----TP Ciclev10021700mscaffold_34757641547578036
Tf0256 AtAvailable marker O---OOTP Ciclev10021699mscaffold_34342018743422432J C_unshiu_00411:mRNA_13.1C_unshiu_00411116444118424Myb-related protein Myb4AGI-0552.314
Tf0433 ------TP Ciclev10021699mscaffold_34342018743422432
Cp1436 ------TP Ciclev10021696mscaffold_34872083748722931
Lp0207 O---