Citrus CAPS Marker Database

National Agriculture and Food Research Organization
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Target: Genome/map
 Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)		 KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)		 JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)		 Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)		 Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
▲▼		 Locus
name alias
▲▼		 Rank hybrid cultivar
▲▼		 Citrus
collection
O -		 Cultivar identifi-
cation manual
O -		 Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -		 Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -		 Graphical map
O -		 Genotype

O -		 Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



▲▼		 Transcript ID

▲▼		 Scaffold

▲▼		 Start End Transcript ID

▲▼		 Scaffold

▲▼		 Start End Gene function

▲▼		 AGI LG

▲▼		 AGI cM KmMg LG

▲▼		 KmMg cM JtTr LG

▲▼		 JtTr cM Km/O41 LG
▲▼		 Km/O41 cM Rp/Sa LG

▲▼		 Rp/Sa cM
Lp0024 HDisagree on Clementine haploid genotype O-----SI010,SI302TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QAGI-0274.555RP-02.217.330
Bf0182 O-----TP Ciclev10009454mscaffold_11783133317834889J C_unshiu_00429:mRNA_12.1C_unshiu_0042990883942963-deoxy-D-manno-octulosonate cytidylyltransferaseAGI-0147.439
Fb0357 O-----SI384TP Ciclev10001633mscaffold_54055022240554434J C_unshiu_00889:mRNA_6.1C_unshiu_008894417551825Hypothetical proteinAGI-0939.104
Bf0183 O-----SI308TP Ciclev10005208mscaffold_952544165256826J C_unshiu_01106:mRNA_9.1C_unshiu_011067727579234Hypothetical protein
Tf0168 AAvailable marker OO-OOOSI175TP Ciclev10007563mscaffold_12489876924905716J C_unshiu_00341:mRNA_22.1C_unshiu_00341170777178753AT-rich interactive domain-containing protein 4AGI-0125.752
Bf0184 O-----TP Ciclev10021248mscaffold_32489355124898675J C_unshiu_00286:mRNA_27.1C_unshiu_00286216376220366Cysteine protease ATG4BAGI-0541.306
Fb0365 O-----SI036,SI320TP Ciclev10026391mscaffold_72087246220874659J C_unshiu_00098:mRNA_41.1C_unshiu_00098264947272086Hypothetical proteinAGI-0231.596KmG-02JtR-02-4.953
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Bf0193 O-----SI100,SI109TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1RP-06.214.065
Ov0305 MDisagree by Marco analysis O-----SI028,SI292TP Ciclev10012499mscaffold_61690949216912088J C_unshiu_00008:mRNA_65.1C_unshiu_0000836694336950440S ribosomal protein S4AGI-0888.433KmG-0445.755RP-0415.410
Fb0373 O-----TP Ciclev10000030mscaffold_564044636435349J C_unshiu_00034:mRNA_15.1C_unshiu_00034150102178260ATP-dependent RNA helicase DHX29AGI-0985.810KmG-0922.909JtR-09S7.995RP-090.104
Tf0172 O-----TP Ciclev10026400mscaffold_799766219980176J C_unshiu_00496:mRNA_5.1C_unshiu_004964806950951Auxin-induced protein IAA6AGI-0210.638
Tf0173 O-----TP Ciclev10015413mscaffold_22609734326099320J C_unshiu_00259:mRNA_35.1C_unshiu_00259219790227265Hypothetical proteinRP-06.128.110
Tf0449 OOthers O-----TP Ciclev10009165mscaffold_12825430728257305J C_unshiu_01997:mRNA_4.1C_unshiu_019973253935330Translation initiation factor IF-3AGI-010.404
Fb0423 O-----TP Ciclev10020919mscaffold_3867235871452
Lp0034 ULess informative for main cultivars O-----J C_unshiu_00087:mRNA_54.1C_unshiu_00087395005398280Peroxisomal membrane protein 13
Tf0454 AAvailable marker O---OOTP Ciclev10027306mscaffold_71610872316113463J C_unshiu_00371:mRNA_10.1C_unshiu_00371121418127245GATA transcription factorAGI-0221.099
Cp1143 MDisagree by Marco analysis O-----TP Ciclev10000651mscaffold_53985853139862402J C_unshiu_00096:mRNA_9.1C_unshiu_000967071373505Phosphoglycerate dehydrogenaseAGI-0942.158
Tf0455 OOthers O-----TP Ciclev10017004mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical proteinAGI-06114.172
Bf0205 O-----SI236TP Ciclev10025925mscaffold_735419243543863J C_unshiu_00301:mRNA_11.1C_unshiu_003015557057462WRKY
Fb0827 O-----SI215,SI301TP Ciclev10004432mscaffold_923534422357780J C_unshiu_00394:mRNA_9.1C_unshiu_003944171945690Chloroplast 1-deoxy-D-xylulose-5-phosphate synthaseAGI-0319.017KmG-03116.544JtR-034
Fb0995 OOthers O-----SI026TP Ciclev10024677mscaffold_711800191202408J C_unshiu_00544:mRNA_10.1C_unshiu_0054497318121662FAT domain-containing proteinAGI-0274.555KmG-0282.954JtR-0210.215
Ov0314 AAvailable marker O---OOSI107TP Ciclev10029386mscaffold_881763718177435J C_unshiu_00728:mRNA_1.1C_unshiu_0072840704922Mannan polymerase complex subunit mnn9AGI-0856.724KmG-0858.356JtR-0821.829RP-0841.217
Tf0184 AAvailable marker O---OOTP Ciclev10019968mscaffold_34539385745398298J C_unshiu_00546:mRNA_8.1C_unshiu_005467502378260Zinc finger CCCH domain-containing protein 3AGI-0557.948
Tf0185 O-----TP Ciclev10014198mscaffold_23174043131747095
Vs0005 OOthers O-----SI022,SI075TP Ciclev10016009mscaffold_23321683933219042J C_unshiu_00002:mRNA_211.1C_unshiu_0000215118091513915Epoxide hydrolase 2AGI-0631.521KmG-0259.329JtR-06S50.000NAT-06S50.000
Af1003 O-----TP Ciclev10001093mscaffold_51560585215610028J C_unshiu_00533:mRNA_20.1C_unshiu_00533131430141111Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrialAGI-0222.436
Bf0218 O-----SI232TP Ciclev10000452mscaffold_53603699036048487J C_unshiu_00406:mRNA_20.1C_unshiu_00406134274145322IsoamylaseAGI-0953.205KmG-0937.847RP-0970.349
Cp1200 MDisagree by Marco analysis O-----J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0838.604
Fb1430Fb1430.lg O-----TP Ciclev10005994mscaffold_918796751880523J C_unshiu_00102:mRNA_3.1C_unshiu_00102165071733460S ribosome subunit biogenesis protein NIP7 homologAGI-03
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Tf0195 MDisagree by Marco analysis O-----TP Ciclev10030351mscaffold_86799774191J C_unshiu_01137:mRNA_4.1C_unshiu_011373083736569AT-rich interactive domain-containing protein 3AGI-0887.683
Bf0226 MDisagree by Marco analysis O-----TP Ciclev10008869mscaffold_12365478523658857J C_unshiu_00175:mRNA_30.1C_unshiu_00175321759325671SEC14 cytosolic factorAGI-0863.341
Tf0198 AAvailable marker O----OTP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7
Af1011 O-----TP Ciclev10013781mscaffold_62530682925315243J C_unshiu_00009:mRNA_53.1C_unshiu_00009289462299397Hypothetical proteinRP-0460.491
Bf0233 MDisagree by Marco analysis O-----SI359TP Ciclev10019826mscaffold_365022316504139J C_unshiu_00521:mRNA_1.1C_unshiu_0052124494274Cytochrome P450 76C2AGI-0542.581RP-0527.235
Lp0102 MDisagree by Marco analysis O-----SI080,SI319,SI360,SI378TP Ciclev10020840mscaffold_33064873230651259J C_unshiu_00759:mRNA_1.1C_unshiu_007599173353Senescence-related gene 1AGI-0542.737KmG-05S41.895JtR-0528.682NAT-0537.917RP-0551.879
Ov0401 MDisagree by Marco analysis O-----TP Ciclev10004762mscaffold_92873600828740315NoKmG-0858.635SA-06
Tf0200 O-----TP Ciclev10030297mscaffold_82109556921102194
Fb2156Fb2156.lg O-----TP Ciclev10000537mscaffold_53999223439996269J C_unshiu_00096:mRNA_31.1C_unshiu_00096198494202358Poly(A) binding protein 6, putative isoform 1AGI-0941.254
Ov0403 AAvailable marker O---OOSI136,SI298,SI325TP Ciclev10016280mscaffold_22389181423893095J C_unshiu_00081:mRNA_50.1C_unshiu_00081296655297936Chlorophyll a/b binding proteinAGI-0661.779KmG-0612.610JtR-06S
Tf0201 O-----SI195TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1
Lp0105 Bno homozygous cultivar with minor allele O-----SI113,SI163,SI254TP Ciclev10026412mscaffold_7815904817239J C_unshiu_00353:mRNA_13.1C_unshiu_003539203393437Hypothetical proteinAGI-0275.939
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Af1017 O-----TP Ciclev10006402mscaffold_92267155422672639NoAGI-0346.274
Tf0205 OOthers O-----SI274TP Ciclev10005062mscaffold_91638385116393557J C_unshiu_00094:mRNA_29.1C_unshiu_00094262934272307UBX domain-containing protein 1AGI-0346.274
Lp0109 OOthers O-----TP Ciclev10020902mscaffold_31756112717562695
Lp0112 AAvailable marker O-----TP Ciclev10032923mscaffold_437498093751724J C_unshiu_00236:mRNA_28.1C_unshiu_00236161422163318ATP synthase subunit d, mitochondrialAGI-0719.603RP-0750.962
Af1026 O-----TP Ciclev10016450mscaffold_22469026124692734J C_unshiu_00136:mRNA_33.1C_unshiu_00136278221280719Period circadian protein, putative isoform 1RP-06.124.027
Af1027 O-----TP Ciclev10005293mscaffold_929463012950297
Af1028 O-----TP Ciclev10000335mscaffold_54211362142120391
Tf0213 OOthers O-----TP Ciclev10030571mscaffold_41883954618848948J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putativeAGI-0748.581
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
Af1032 O-----TP Ciclev10009868mscaffold_183774898379348
Lp0120 O-----TP Ciclev10021535mscaffold_35039957150401808
Af1033 O-----TP Ciclev10016063mscaffold_21045689910459385
Al0309 AAvailable marker O----OTP Ciclev10022019mscaffold_34490005944900865J C_unshiu_00069:mRNA_47.1C_unshiu_00069301188317479Hypothetical proteinKmG-05S73.967JtR-0538.749RP-0586.332
Lp0122 MDisagree by Marco analysis O-----SI170TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QNAT-02S69.942RP-02.217.330
Tf0219 Bno homozygous cultivar with minor allele O-----SI076,SI267TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0349.250
Af1035 O-----TP Ciclev10030982mscaffold_42346918423472872
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Ov0423 T3 or more alleleic model O-----TP Ciclev10023016mscaffold_34295436242955051J C_unshiu_00152:mRNA_28.1C_unshiu_00152189707190632Hypothetical proteinAGI-0555.522
Al0313 AAvailable marker O---OOTP Ciclev10011272mscaffold_62396603923969583J C_unshiu_00133:mRNA_4.2C_unshiu_001332248526003Putative phosphatidylinositol 4-kinase type 2-betaAGI-0438.152KmG-049.748
Lp0126 AAvailable marker O---OOTP Ciclev10025164mscaffold_739468183949964J C_unshiu_00801:mRNA_10.1C_unshiu_0080197228100216Phototropic-responsive NPH3 family proteinAGI-0265.295KmG-0254.892JtR-0226.278RP-02.2
Tf0224 OOthers O-----TP Ciclev10011741mscaffold_677853287796808J C_unshiu_00104:mRNA_54.1C_unshiu_00104400959412354Zinc finger CCCH domain-containing protein 32AGI-0499.859
Al0316 O-----TP Ciclev10021599mscaffold_34091814840922656
Tf0226 AAvailable marker O----OTP Ciclev10008836mscaffold_1526813529150J C_unshiu_00129:mRNA_32.1C_unshiu_00129303106311407Exocyst subunit EXO70 family proteinRP-011.100
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Tf0227 AAvailable marker O---OOTP Ciclev10031750mscaffold_42166606121671693J C_unshiu_00010:mRNA_30.1C_unshiu_00010183508188843Trihelix transcription factor GT-1AGI-0835.927
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Lp0133 AtAvailable marker O---OOTP Ciclev10021187mscaffold_33965761339660222J C_unshiu_00037:mRNA_84.1C_unshiu_00037603033605555Class I chitinaseAGI-0548.590KmG-05S60.040NAT-0526.483RP-0565.128
Ov0503 AtAvailable marker O----OTP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5NAT-0519.042
Cp0001 O-----TP Ciclev10021700mscaffold_34757641547578036
Cp0002 O-----TP Ciclev10020254mscaffold_34758333747586652
Vt0030Vt0030.k O-----TP Ciclev10024917mscaffold_71127170511277014J C_unshiu_01240:mRNA_4.1C_unshiu_012402765532960Phospholipase DAGI-0212.615
Cp0004 O-----TP Ciclev10020892mscaffold_34875330748755805
Af1051 O-----TP Ciclev10000105mscaffold_53509313235106001
Cp0006 O-----TP Ciclev10031874mscaffold_41461089714614381
Tf0235 MDisagree by Marco analysis O--O--TP Ciclev10030472mscaffold_41705765817074755J C_unshiu_00225:mRNA_13.1C_unshiu_002257570696678TATA-binding protein-associated factor 172AGI-0743.879
Vt0032 O-----SI024TP Ciclev10024737mscaffold_71790148717905433J C_unshiu_00382:mRNA_15.1C_unshiu_00382163577167662Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1AGI-0225.601RP-026.081
Af1052 O-----TP Ciclev10004444mscaffold_91280815412820311J C_unshiu_00508:mRNA_9.1C_unshiu_005084038558179Hypothetical proteinAGI-0856.724
Cp0007 ULess informative for main cultivars O-----TP Ciclev10022090mscaffold_34692469246927004
Ov0509 ULess informative for main cultivars O-----NoAGI-09102.280RP-0921.445
Af1053 O-----TP Ciclev10014664mscaffold_22920681829208977
Cp0009 O-----TP Ciclev10018574mscaffold_34614324146147293
Lp0140 MDisagree by Marco analysis O-----TP Ciclev10016399mscaffold_23262990832634194J C_unshiu_00070:mRNA_52.1C_unshiu_00070393864397918Universal stress protein A-like proteinKmG-0212.229JtR-022.765RP-028.172
Cp0010 O-----TP Ciclev10020155mscaffold_34560480645609651
Cp0012 O-----TP Ciclev10022248mscaffold_34444284144444278
Ov0512 OOthers O-----TP Ciclev10006241mscaffold_92719850827199642J C_unshiu_00433:mRNA_19.1C_unshiu_00433116730118286Small heat shock proteinAGI-0340.361KmG-03225.743JtR-031NAT-03
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Gn0014.2 Bno homozygous cultivar with minor allele O-----TP Ciclev10005481mscaffold_92948865829491181J C_unshiu_00056:mRNA_20.1C_unshiu_00056144107146527Beta-carotene hydroxylase 1
Ov0513 OOthers O-----TP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00009:mRNA_59.1C_unshiu_00009325807333424Hypothetical proteinAGI-0438.903KmG-045.110RP-0460.491
Tf0241 Bno homozygous cultivar with minor allele O-----TP Ciclev10027798mscaffold_82210687222114471J C_unshiu_00481:mRNA_18.1C_unshiu_00481121975128680Zinc finger CCCH domain-containing protein 24AGI-0827.618
Wy0003 AAvailable marker O---OOTP Ciclev10001202mscaffold_53718965337192231J C_unshiu_00144:mRNA_30.1C_unshiu_00144215223217733AminotransferaseAGI-0946.823KmG-0952.581NAT-0969.467
Wy0005 DDominant marker O-----TP Ciclev10019927mscaffold_34833710548339028NoAGI-0583.570KmG-05S122.932
Af1060 O-----TP Ciclev10000400mscaffold_54291837142923480J C_unshiu_00370:mRNA_16.1C_unshiu_003707528379772Tonoplast monosaccharide transporter 2AGI-0923.647
Cp0021 O-----TP Ciclev10015229mscaffold_22230529722307562
Lp0202 O-----TP Ciclev10006509mscaffold_931310063134438J C_unshiu_00051:mRNA_31.2C_unshiu_00051239802243699NEDD8-activating enzyme E1 catalytic subunitAGI-0323.085
Wy0006 O-----TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1KmG-05S19.072JtR-0519.698NAT-0521.803
Af1061 O-----TP Ciclev10024969mscaffold_760804106084393
Cp0026bCp0026.2 O-----TP Ciclev10024128mscaffold_34335440443355588
Wy0008 HDisagree on Clementine haploid genotype O-----TP Ciclev10009193mscaffold_192973609299641NoAGI-0157.863KmG-0143.003JtR-01S99.300
Cp0028 O-----TP Ciclev10014471mscaffold_21141833111422116
Ov0520 OOthers O-----TP Ciclev10029053mscaffold_847123934713689J C_unshiu_00438:mRNA_3.1C_unshiu_004383434335619BURP domain-containing proteinAGI-0833.144JtR-0826.748
Cp0030 O-----TP Ciclev10019700mscaffold_34381564743818118J C_unshiu_00869:mRNA_1.1C_unshiu_008691761664Phospholipase A1-Igamma1, chloroplasticAGI-0553.642
Lp0206 O-----TP Ciclev10011764mscaffold_62083650920840107J C_unshiu_00052:mRNA_56.1C_unshiu_00052452105455631Monodehydroascorbate reductaseAGI-0458.655
Al0401 OOthers O-----TP Ciclev10025346mscaffold_71318056713191638J C_unshiu_01698:mRNA_6.1C_unshiu_016983933640206Hypothetical proteinKmG-0226.204JtR-02-6.043NAT-02S22.960
Cp0033 O-----TP Ciclev10031724mscaffold_42355654023559896
Lp0207 O-----TP Ciclev10021695mscaffold_361403326142252J C_unshiu_01103:mRNA_8.1C_unshiu_011036753169104Protein ODORANT1AGI-0545.374RP-0525.010
Tf0250 AAvailable marker O---OOTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-AAGI-0873.105
Wy0011 OOthers O-----SI091TP Ciclev10032364mscaffold_42441760224419019J C_unshiu_00001:mRNA_226.1C_unshiu_0000114299431431279Enoyl CoA hydratase/isomeraseAGI-0786.288
Af1067 O-----
Al0402 AAvailable marker O---OOJ C_unshiu_00008:mRNA_88.1C_unshiu_00008564906567158Peptide upstream ORF protein, putativeAGI-0881.190KmG-0444.163NAT-0428.388
Cp0039 O-----TP Ciclev10032929mscaffold_415496791551396J C_unshiu_00012:mRNA_98.1C_unshiu_00012722822724539LOB domain-containing protein 12AGI-0711.882
Wy0012 O----OTP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorKmG-03211.250JtR-0314.898NAT-0311.970
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Cp0042 O-----TP Ciclev10018175mscaffold_23340922233411202
Ov0525 ULess informative for main cultivars O-----TP Ciclev10015260mscaffold_21583314215836770J C_unshiu_01875:mRNA_4.1C_unshiu_018753598339196ADP/ATP translocase 1AGI-0691.522SA-0627.092
Af1070 O-----TP Ciclev10008140mscaffold_11730856617311235
Lp0211 O-----TP Ciclev10009567mscaffold_12581694925818472J C_unshiu_00066:mRNA_48.1C_unshiu_00066279404280861Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1AGI-0130.175RP-0124.533
Tf0254 Bno homozygous cultivar with minor allele O-----TP Ciclev10010885mscaffold_62391687623939827J C_unshiu_00253:mRNA_3.1C_unshiu_002531464720586Hypothetical proteinAGI-0438.226
Wy0015 O-----SI041TP Ciclev10028465mscaffold_81310125713103161J C_unshiu_02878:mRNA_1.1C_unshiu_02878919910715UDP-glycosyltransferase 73C5AGI-0856.724
Lp0212 O-----TP Ciclev10030930mscaffold_42269705622699336J C_unshiu_00004:mRNA_48.1C_unshiu_00004381547383756Polygalacturonase 1 beta-like protein 3AGI-0769.544
Al0407 AAvailable marker O---OOTP Ciclev10009315mscaffold_12657605926578193J C_unshiu_00131:mRNA_17.1C_unshiu_0013112115212318360S ribosomal protein L7AGI-0131.240KmG-0115.673JtR-01S57.666RP-0179.425
Cp0050 O-----TP Ciclev10002804mscaffold_53231329932314734
Tf0256 AtAvailable marker O---OOTP Ciclev10021699mscaffold_34342018743422432J C_unshiu_00411:mRNA_13.1C_unshiu_00411116444118424Myb-related protein Myb4AGI-0552.314
Af1073 O-----TP Ciclev10021041mscaffold_3632882635612
Al0408 O-----TP Ciclev10031487mscaffold_42373775723740513J C_unshiu_00001:mRNA_109.1C_unshiu_00001727392729266F-box/kelch-repeat protein SKIP11AGI-0775.917KmG-0713.235JtR-071.788
Cp0051 O-----TP Ciclev10003175mscaffold_53332202933325343
Al0409 Bno homozygous cultivar with minor allele O-----SI201,SI252TP Ciclev10024949mscaffold_750425085046271NoAGI-0250.758KmG-0244.930JtR-0229.462NAT-02S90.742
Cp0052 OOthers O-----J C_unshiu_01597:mRNA_11.1C_unshiu_015972947142354Glucose-6-phosphate dehydrogenase 4AGI-0896.035
Cp0056 O-----TP Ciclev10000941mscaffold_53506534335070910
Tf0259 AAvailable marker O---OOTP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0267.666
Al0411 AAvailable marker O---OOTP Ciclev10029439mscaffold_81976007719761961J C_unshiu_00011:mRNA_19.2C_unshiu_00011188649189649Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0840.857
Lp0218 O-----TP Ciclev10006429mscaffold_9883603885249
Cp0059 O-----TP Ciclev10031015mscaffold_42307572823081009J C_unshiu_00001:mRNA_13.1C_unshiu_000018982896147Protein NLRC3AGI-0886.856
Cp0061 O-----TP Ciclev10031220mscaffold_42257731722582276
Lp0220 O-----TP Ciclev10000749mscaffold_53922121039227401J C_unshiu_00495:mRNA_21.1C_unshiu_00495125230136174Hypothetical proteinAGI-0714.968
Cp0062 O-----TP Ciclev10032378mscaffold_41610719916109587J C_unshiu_01642:mRNA_2.1C_unshiu_016421631620085Ribose-phosphate diphosphokinaseAGI-0745.716
Tf0264 AAvailable marker O---OOTP Ciclev10015873mscaffold_2248256250675J C_unshiu_00109:mRNA_29.1C_unshiu_00109175776179005GANAGI-06103.728
Cp0065 O-----TP Ciclev10002793mscaffold_584351238435971J C_unshiu_01044:mRNA_2.1C_unshiu_0104471177963FerredoxinAGI-0986.996
Al0417 MDisagree by Marco analysis O-----SI244,SI255TP Ciclev10015483mscaffold_23521269135214865J C_unshiu_00048:mRNA_50.1C_unshiu_00048328418330513Kelch repeat-containing F-box family proteinAGI-0620.297KmG-0662.256NAT-06S56.647
Cp0066 O-----TP Ciclev10027599mscaffold_758012085803835
Tf0001.2 AAvailable marker OOO-OOTP Ciclev10020248mscaffold_386475298652282J C_unshiu_00580:mRNA_10.1C_unshiu_005807511881473Transcription factor BIM1AGI-0541.893
Cp0067 O-----TP Ciclev10009235mscaffold_12005692620059223
Tf0267 AAvailable marker O---OOTP Ciclev10031834mscaffold_41257152612575185J C_unshiu_00847:mRNA_8.1C_unshiu_008474865152296Squamosa promoter-binding-like protein 13AGI-0737.800
Al0419 OOthers O-----TP Ciclev10005894mscaffold_924528532455181J C_unshiu_00394:mRNA_25.1C_unshiu_00394150531152208Hypothetical proteinAGI-0317.378KmG-099.593JtR-09S7.976
Cp0070 O-----TP Ciclev10014440mscaffold_23542910335435228
Tf0003.2 OOthers O-----TP Ciclev10002471mscaffold_53780887837811097J C_unshiu_00238:mRNA_14.1C_unshiu_00238116142129209Hypothetical proteinAGI-0944.054
Tf0268 AAvailable marker O---OOTP Ciclev10021157mscaffold_31014090410142752J C_unshiu_00149:mRNA_29.1C_unshiu_00149326478328059Transcription factor MYB21AGI-0543.800
Af1087 O-----TP Ciclev10019689mscaffold_32479635124800588J C_unshiu_00286:mRNA_17.1C_unshiu_00286132648135466Glycine hydroxymethyltransferaseAGI-0541.306
Lp0226 O-----SI210TP Ciclev10027999mscaffold_828318322837109J C_unshiu_00152:mRNA_19.1C_unshiu_00152138714144356Embryonic polyadenylate-binding proteinAGI-0873.527
Af1088 O-----TP Ciclev10031611mscaffold_41717111417174966
Cp0073 O-----TP Ciclev10020501mscaffold_359722885978062J C_unshiu_00997:mRNA_9.1C_unshiu_009976925775059TransaldolaseAGI-0534.924
Tf0005.2 AAvailable marker O----OTP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homolog
Wy0030 AAvailable marker O---OOTP Ciclev10001854mscaffold_53622931036230518J C_unshiu_00619:mRNA_10.1C_unshiu_006198721388404EXORDIUM like 2AGI-0953.205KmG-0944.154JtR-09S63.577NAT-0965.585
Al0422 T3 or more alleleic model O-----TP Ciclev10013176mscaffold_61449547314496662J C_unshiu_00032:mRNA_34.1C_unshiu_00032369423370581Subtilisin inhibitor 1, putativeAGI-0893.695
Cp0076 O-----TP Ciclev10021577mscaffold_363291336332201J C_unshiu_01248:mRNA_3.1C_unshiu_012483903142057ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0535.411
Tf0271 Bno homozygous cultivar with minor allele OO-O--TP Ciclev10010976mscaffold_61170795311715646J C_unshiu_01619:mRNA_7.1C_unshiu_016194234750640CCR4-NOT transcription complex subunit 4AGI-0895.613
Cp0077 O-----TP Ciclev10015497mscaffold_298491339852098J C_unshiu_00049:mRNA_29.1C_unshiu_00049210181212829Altered inheritance of mitochondria protein 32AGI-0854.867
Lp0229 O-----TP Ciclev10015636mscaffold_22463705324639946J C_unshiu_00136:mRNA_24.1C_unshiu_00136221432223640ARM repeat superfamily proteinRP-06.125.198
Wy0032 OOthers O---OOTP Ciclev10005365mscaffold_91035708410359834J C_unshiu_00367:mRNA_10.1C_unshiu_00367100255102997Male sterility MS5 family proteinAGI-0346.121KmG-03214.572JtR-03112.840
Af1091 O-----TP Ciclev10021043mscaffold_34331604643317909J C_unshiu_00411:mRNA_2.1C_unshiu_004111151013352Arabinose 5-phosphate isomeraseAGI-0552.655
Cp0080 O-----TP Ciclev10015476mscaffold_21159899911601307
Lp0230 O-----TP Ciclev10009651mscaffold_12009457520097443
Af1092 O-----TP Ciclev10019279mscaffold_35086809650873164
Cp0083 O-----TP Ciclev10031889mscaffold_41962606119629792
Tf0275 AAvailable marker O---OOTP Ciclev10006256mscaffold_9955176957425J C_unshiu_00249:mRNA_31.1C_unshiu_00249191274194861Transposon protein, putative, Mutator sub-classAGI-0311.501
Cp0085 O-----TP Ciclev10012552mscaffold_62336430323366061J C_unshiu_00098:mRNA_21.1C_unshiu_00098143026144827Allene oxide cyclaseAGI-0442.183
Gn0060.2 OOthers O-----TP Ciclev10028245mscaffold_81925962319261508
Lp0232 O-----TP Ciclev10030590mscaffold_42112013521127140J C_unshiu_00010:mRNA_105.1C_unshiu_00010751317757205CHASE-domain containing histidine kinase 1RP-0719.079
Wy0035 ULess informative for main cultivars O-----TP Ciclev10014857mscaffold_23114884931150616J C_unshiu_00292:mRNA_13.1C_unshiu_00292110620112650FAD-binding Berberine family proteinAGI-0636.863
Cp0086 OOthers O-----TP Ciclev10032381mscaffold_42415485624157188
Gn0061.2 MDisagree by Marco analysis O-----TP Ciclev10031014mscaffold_42550060125505812J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0620.248
Tf0011.2 OOthers O-----TP Ciclev10018614mscaffold_31107879811089090J C_unshiu_02207:mRNA_3.1C_unshiu_02207980219021Hypothetical proteinAGI-0542.191
Tf0277 OOthers O-----TP Ciclev10019282mscaffold_3181596185335
Cp0088 O-----TP Ciclev10031190mscaffold_42390818923912723
Lp0235 O-----TP Ciclev10019848mscaffold_394660719468445J C_unshiu_00227:mRNA_19.1C_unshiu_00227186549194369Nepenthesin IIAGI-0543.412RP-0544.731
Cp0089 Bno homozygous cultivar with minor allele O-O---TP Ciclev10032543mscaffold_42385883023861090J C_unshiu_00001:mRNA_128.1C_unshiu_00001852968856494CAAX amino terminal protease family proteinAGI-0777.194
Gn0063 OOthers O-----TP Ciclev10019925mscaffold_34093772540942854J C_unshiu_00735:mRNA_14.1C_unshiu_0073599621103733Violaxanthin de-epoxidaseAGI-0860.140KmG-0731.750
Lp0236 O-----TP Ciclev10011623mscaffold_62281921222821782
Tf0013 OOthers OOO-OOSI161,SI362TP Ciclev10027769mscaffold_81340861013413938J C_unshiu_01226:mRNA_1.1C_unshiu_012262055925720DNA replication licensing factor MCM2AGI-0856.123
Cp0093 Bno homozygous cultivar with minor allele O-----TP Ciclev10032427mscaffold_42359643423599906J C_unshiu_00001:mRNA_89.1C_unshiu_00001587949598235Putative WRKY transcription factor 72AGI-0774.537
Gn0064 ULess informative for main cultivars O-----SI144,SI380TP Ciclev10019364mscaffold_32935185429354190J C_unshiu_00549:mRNA_6.1C_unshiu_0054939588419219-cis-epoxycarotenoid dioxygenase 1AGI-0542.191RP-0551.531
Cp0100 O-----TP Ciclev10024866mscaffold_71047113610474241J C_unshiu_00924:mRNA_4.1C_unshiu_009245026952902Tetratricopeptide repeat-like superfamily proteinAGI-0214.111
Gn0065 Bno homozygous cultivar with minor allele O-----J C_unshiu_00021:mRNA_4.1C_unshiu_000213417838574Phytoene desaturaseAGI-0979.316
Wy0040 AAvailable marker O----OTP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00001:mRNA_217.1C_unshiu_0000113783781380557Hypothetical proteinKmG-0412.855
Gn0066.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10011230mscaffold_61957817919583475J C_unshiu_00043:mRNA_12.1C_unshiu_000439021294791Carotenoid isomeraseAGI-04
Gn0067 OOthers O-----SI204,SI349TP Ciclev10004730mscaffold_92272831022730086J C_unshiu_00295:mRNA_17.1C_unshiu_00295207257208985Lycopene beta-cyclaseAGI-0346.274
Gn0068.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplastic
Tf0286 DDominant marker O-----TP Ciclev10011556mscaffold_62500158625004619J C_unshiu_01279:mRNA_6.1C_unshiu_012794322246082Dof zinc finger protein DOF5.2AGI-0432.710
Gn0069 ULess informative for main cultivars O-----SI086,SI375TP Ciclev10008410mscaffold_11094631610949617J C_unshiu_00201:mRNA_19.1C_unshiu_00201212151227232Lycopene epsilon cyclaseAGI-0157.863
Tf0022 MDisagree by Marco analysis O-----SI116TP Ciclev10005681mscaffold_93123708931243866J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0378.631
Tf0290 AAvailable marker O---OOTP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2AGI-0857.802
Gn0071 Bno homozygous cultivar with minor allele O-----SI363TP Ciclev10031039mscaffold_42550644625511133J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0786.113
Tf0292 OOthers O-----TP Ciclev10006112mscaffold_93113978931143240J C_unshiu_00003:mRNA_98.2C_unshiu_00003698480711976Protein strawberry notchAGI-0377.793
Tf0293 AAvailable marker OOO--OTP Ciclev10019219mscaffold_34903144149035202J C_unshiu_00018:mRNA_78.1C_unshiu_00018562898566588Putative anthocyanin regulator
Al0515 Bno homozygous cultivar with minor allele O-----SI178TP Ciclev10030023mscaffold_826731352674232J C_unshiu_00152:mRNA_38.1C_unshiu_00152273851275034DNA-damage-repair/toleration protein DRT100AGI-0873.663JtR-0814.154NAT-08110.596
Gn0073 AAvailable marker OO--OOTP Ciclev10014770mscaffold_23589566235898841J C_unshiu_00077:mRNA_4.1C_unshiu_000773041032987Tonoplast dicarboxylate transporterAGI-0612.402
Tf0026 O-----SI111,SI288TP Ciclev10025369mscaffold_7285299292550J C_unshiu_00312:mRNA_28.1C_unshiu_00312151229158232UbiquilinAGI-0278.531
Tf0294 AAvailable marker O---OOTP Ciclev10021365mscaffold_347947014799518J C_unshiu_00135:mRNA_58.2C_unshiu_00135398519403121Ureidoglycine aminohydrolase isoform 1AGI-0527.135
Al0519 DDominant marker O-----TP Ciclev10015260mscaffold_21583314215836770NoRP-06.1
Tf0300 AAvailable marker OO--OOTP Ciclev10022370mscaffold_34386244043863744J C_unshiu_01051:mRNA_10.1C_unshiu_010518341784406Auxin-induced protein IAA4AGI-0554.726
Tf0032 AAvailable marker O---OOTP Ciclev10026014mscaffold_79415597631J C_unshiu_00706:mRNA_8.1C_unshiu_007065152554837AT-hook motif nuclear-localized protein 10AGI-0278.531
Al0524 AAvailable marker OO--OOSI043,SI341TP Ciclev10031723mscaffold_4115362118025J C_unshiu_02038:mRNA_4.1C_unshiu_020383425638775Hypothetical proteinAGI-075.972JtR-0776.060RP-0774.381
Al0525 OOthers O-----TP Ciclev10026706mscaffold_7252320254023J C_unshiu_00312:mRNA_20.2C_unshiu_00312114652116351High mobility group (HMG)-box proteinAGI-0138.939KmG-0141.081
Tf0036 AAvailable marker O---OOTP Ciclev10022032mscaffold_34385026943852816J C_unshiu_01051:mRNA_11.1C_unshiu_010519436996339Auxin-responsive protein IAA14AGI-0553.260
Tf0307 Bno homozygous cultivar with minor allele O-----TP Ciclev10009286mscaffold_12539568825397278J C_unshiu_00442:mRNA_24.1C_unshiu_00442209015209831Myb domain protein 5AGI-0123.266
Tf0311 AAvailable marker O---OOTP Ciclev10011596mscaffold_61593201615936176J C_unshiu_00779:mRNA_8.1C_unshiu_007797810581377Auxin transporter-like protein 2AGI-0891.890
Wy0065Wy0065.em O-----
Mf0034 OOthers O-----TP Ciclev10031304mscaffold_415594901563887J C_unshiu_00012:mRNA_100.1C_unshiu_00012732963736971DEAD-box ATP-dependent RNA helicase 27RP-0773.631
Tf0042.2 AAvailable marker O----OTP Ciclev10016820mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical protein
Tf0315 AAvailable marker O---OOTP Ciclev10012089mscaffold_61408718114090115J C_unshiu_00287:mRNA_20.1C_unshiu_00287221944222997PhantasticaAGI-0893.657
Mf0039 AAvailable marker O---OOSI016,SI147J C_unshiu_00343:mRNA_25.1C_unshiu_00343221381224081PLAC8 family proteinAGI-055.510KmG-05S5.643JtR-0510.014
Tf0318 AAvailable marker OOO-OOTP Ciclev10031873mscaffold_41375143313754767J C_unshiu_00240:mRNA_28.2C_unshiu_00240282002285335Transcription factor bHLH137AGI-0737.467
Al0617 AAvailable marker O---OOTP Ciclev10033546mscaffold_410211791023023J C_unshiu_00012:mRNA_24.1C_unshiu_00012188654191971Ubiquitin-binding WIYLD domain proteinAGI-078.553JtR-0774.121
Tf0054 O-----SI238TP Ciclev10000100mscaffold_54310899843114214J C_unshiu_01422:mRNA_2.1C_unshiu_014221515033598Hypothetical proteinAGI-0921.045
Tf0325 OOthers O-----TP Ciclev10029355mscaffold_867004416703748J C_unshiu_02974:mRNA_2.1C_unshiu_029741014213418B-box type zinc finger family proteinAGI-0857.386
Tf0056 AAvailable marker O---OOSI061,SI137TP Ciclev10012265mscaffold_62230592222308021J C_unshiu_00252:mRNA_6.1C_unshiu_002524863249537Myb domain protein 42AGI-0449.225
Tf0326 AAvailable marker OO-OOOSI085TP Ciclev10024695mscaffold_725015202509737J C_unshiu_02417:mRNA_1.1C_unshiu_02417369211684Histone-lysine N-methyltransferase SUVR5AGI-0269.928
Al0621 Bno homozygous cultivar with minor allele O-----TP Ciclev10025875mscaffold_745755034577125J C_unshiu_00656:mRNA_8.1C_unshiu_006563294034329Hypothetical proteinAGI-0260.566KmG-0247.196JtR-0228.472
If0010 AAvailable marker O---O-TP Ciclev10026308mscaffold_712649651266960J C_unshiu_00218:mRNA_11.1C_unshiu_00218634036501860S ribosomal protein L8AGI-0273.759KmG-0276.687JtR-0210.849NAT-02S71.041
Al0625 AAvailable marker O---OOSI329J C_unshiu_00139:mRNA_45.1C_unshiu_00139346138349862Regulator of chromosome condensation family proteinAGI-0466.455RP-0423.717
Cp0384 AAvailable marker O---OOTP Ciclev10015162mscaffold_23542259835425980J C_unshiu_00048:mRNA_23.2C_unshiu_00048111764114820APS reductaseAGI-0619.002
Tf0062 Bno homozygous cultivar with minor allele O--O--SI223TP Ciclev10012377mscaffold_61182647211830875J C_unshiu_00207:mRNA_24.2C_unshiu_00207252955255240Transcription factor ASG4AGI-0893.624
Al0627 HDisagree on Clementine haploid genotype O-----TP Ciclev10025602mscaffold_7128539131642J C_unshiu_00706:mRNA_3.1C_unshiu_007061659018098Trigalactosyldiacylglycerol 1 isoform 1AGI-0278.531
Tf0337 AAvailable marker O---OOTP Ciclev10031846mscaffold_41963541519637061J C_unshiu_00099:mRNA_23.1C_unshiu_00099186480188051Ap2 erf and b3 domain-containing transcription factor rav2AGI-0754.869
Al0630 AAvailable marker O----OTP Ciclev10008681mscaffold_1487184489198J C_unshiu_00129:mRNA_38.1C_unshiu_00129342865344872Kelch repeat-containing F-box family proteinRP-011.092
Tf0067 OOthers O-----SI033,SI187TP Ciclev10025950mscaffold_784387028442381J C_unshiu_00290:mRNA_9.1C_unshiu_002907419477624Transcription factorAGI-025.104
Al0632 HDisagree on Clementine haploid genotype O-----TP Ciclev10028775mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeAGI-0856.724JtR-0818.952
Cp0431 AAvailable marker O---OOTP Ciclev10015731mscaffold_22708417727089027J C_unshiu_00017:mRNA_35.1C_unshiu_00017248152252850E3 ubiquitin protein ligase RIE1AGI-0660.660
Al0633 OOthers O----OSI123TP Ciclev10015092mscaffold_23383740333842156J C_unshiu_00002:mRNA_126.1C_unshiu_00002901824911260Vascular plant one zinc finger protein isoform 1KmG-0655.857JtR-06S59.645NAT-06S51.106RP-06.227.837
Tf0070 OOthers O-----SI277TP Ciclev10002250mscaffold_53974875439753073J C_unshiu_01089:mRNA_6.1C_unshiu_010892264326826Basic helix-loop-helix family proteinAGI-0945.029
Tf0343 AtAvailable marker O---OOTP Ciclev10016587mscaffold_22920468029206501J C_unshiu_00022:mRNA_67.1C_unshiu_00022489282490950High mobility group B protein 7AGI-0644.393
Tf0344 AAvailable marker O---OOTP Ciclev10016433mscaffold_23462423634631123J C_unshiu_00002:mRNA_17.1C_unshiu_00002124392131264Floral homeotic protein AGAMOUSAGI-0624.216
Al0636 AAvailable marker O--OOOSI313TP Ciclev10007493mscaffold_12377679623782088J C_unshiu_00080:mRNA_56.1C_unshiu_00080464290469444WW domain-containing proteinAGI-0127.489KmG-0125.751JtR-01S63.210NAT-01S12.652RP-0148.896
Tf0074 O-----TP Ciclev10005366mscaffold_92844451228446074J C_unshiu_00045:mRNA_7.1C_unshiu_000456260863842TCP family transcription factorAGI-0337.816
Al0637 AAvailable marker O----OSI353TP Ciclev10019147mscaffold_329396202941934J C_unshiu_00092:mRNA_51.1C_unshiu_00092363486365791Spotted leaf protein, putative
Mf0070 MDisagree by Marco analysis O-----SI017TP Ciclev10017346mscaffold_230673373069249J C_unshiu_00246:mRNA_8.1C_unshiu_002466825169988Hypothetical proteinAGI-0736.616JtR-0752.611RP-0719.079
Al0638 OOthers O-----TP Ciclev10027380mscaffold_786620418665543J C_unshiu_00221:mRNA_2.1C_unshiu_00221665810157VHS domain-containing proteinKmG-0723.435JtR-0717.224NAT-0724.049
Al0639 AAvailable marker O---OOTP Ciclev10001091mscaffold_54170378741708779J C_unshiu_00009:mRNA_141.1C_unshiu_00009874868888901IQ calmodulin-binding motif proteinAGI-0170.494KmG-0148.992JtR-01S110.675NAT-01S94.639RP-0128.746
If0216 OOthers O-----SI174TP Ciclev10015257mscaffold_21287695212881843J C_unshiu_01838:mRNA_2.1C_unshiu_018382359431186Hypothetical proteinAGI-0974.076KmG-0126.420JtR-01S66.382RP-0929.224
Tf0077 O-----SI135TP Ciclev10008135mscaffold_12843397228437921J C_unshiu_00590:mRNA_15.1C_unshiu_005908643090131WRKYAGI-0134.814
Tf0079 MDisagree by Marco analysis O--O--SI270,SI294TP Ciclev10021287mscaffold_370470247049430J C_unshiu_00425:mRNA_7.1C_unshiu_004253560838027Heat stress transcription factor B-4AGI-0545.092
Tf0350 OOthers O-----SI132TP Ciclev10019034mscaffold_389147448921411J C_unshiu_00695:mRNA_7.1C_unshiu_006957148377987Acetyl-coenzyme A synthetaseAGI-0543.295
Tf0353 MDisagree by Marco analysis O-----SI087TP Ciclev10018691mscaffold_33469666134702240J C_unshiu_00669:mRNA_17.2C_unshiu_00669126539133312Cell division cycle 5-like proteinAGI-0853.069
Cp0506 AAvailable marker O---OOTP Ciclev10001978mscaffold_54083260340834625NoAGI-0938.656
Mf0079 AAvailable marker O---OOSI067TP Ciclev10028839mscaffold_82472193724724569J C_unshiu_00984:mRNA_8.1C_unshiu_009845567658212Cinnamoyl CoA reductaseAGI-083.409KmG-08NAT-082
Al0647 MDisagree by Marco analysis O-----TP Ciclev10016069mscaffold_23264074332643349J C_unshiu_00070:mRNA_53.1C_unshiu_00070403765406305Nitric oxide synthase-interacting protein homologAGI-06KmG-0646.877
Tf0088 MDisagree by Marco analysis O-----SI066TP Ciclev10001291mscaffold_54127520141278829J C_unshiu_00127:mRNA_34.1C_unshiu_00127251592254627Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1AGI-0935.763
Bf0003 ULess informative for main cultivars O-----SI354TP Ciclev10011720mscaffold_61624677316250769J C_unshiu_00390:mRNA_6.1C_unshiu_003907579978947Vacuolar cation/proton exchanger 3RP-0410.253
Ks9005 AAvailable marker O---OOSI342TP Ciclev10015338mscaffold_2290799294122J C_unshiu_00109:mRNA_36.1C_unshiu_00109219070222359TRNA-splicing ligase RtcBAGI-0213.646KmG-0223.647RP-0216.986
Cp0537 AAvailable marker O---OOTP Ciclev10016779mscaffold_23418921634193815J C_unshiu_00002:mRNA_71.2C_unshiu_00002543564547918Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10AGI-0625.930
Tf0090 AAvailable marker O----OTP Ciclev10031135mscaffold_41651904616521918J C_unshiu_00086:mRNA_45.1C_unshiu_00086374812377677Transcription factor bHLH62
Mf0086 AAvailable marker O---OOSI220,SI315TP Ciclev10009756mscaffold_12559249425593617J C_unshiu_00066:mRNA_75.1C_unshiu_0006650099250183317.9 kDa class II heat shock proteinAGI-0126.428KmG-0119.692JtR-01S57.666RP-0169.936
Mf0088 OOthers O-----TP Ciclev10001453mscaffold_551040675106917J C_unshiu_00108:mRNA_11.1C_unshiu_0010810128310549360S ribosomal protein L3RP-09
Tf0093.2 AAvailable marker O---OOTP Ciclev10002569mscaffold_52941314329414562J C_unshiu_00110:mRNA_25.1C_unshiu_00110149681150624Auxin-responsive protein IAA4AGI-0986.512
Tf0364 AAvailable marker O---OOTP Ciclev10011266mscaffold_62460650124612654J C_unshiu_00135:mRNA_49.1C_unshiu_00135338118344273FACT complex subunit SSRP1AGI-0437.102
Tf0095 O-----TP Ciclev10016229mscaffold_23441215234415059
Tf0096 O-----TP Ciclev10028804mscaffold_82136937321370728J C_unshiu_00784:mRNA_1.1C_unshiu_007842971652Transcription factor RAX3AGI-0834.042
Bf0011 AAvailable marker O---OOSI218TP Ciclev10008900mscaffold_147228894726339J C_unshiu_00547:mRNA_9.1C_unshiu_005475455657654NADH-cytochrome b5 reductaseAGI-0167.331RP-0123.653
Tf0368 AAvailable marker O---OOSI102TP Ciclev10020717mscaffold_34096377440965744J C_unshiu_00735:mRNA_9.1C_unshiu_007357667378652NAC transcription factor 29AGI-0548.590
Bf0013 O-----TP Ciclev10008507mscaffold_12311173323116067NoAGI-01RP-0147.360
Bf0016 O-----TP Ciclev10002605mscaffold_53578241935784765J C_unshiu_00255:mRNA_23.1C_unshiu_00255146364148653Protein CutA 1, chloroplasticRP-0967.943
Cp0603 MDisagree by Marco analysis O-----TP Ciclev10028998mscaffold_823496552354496J C_unshiu_00363:mRNA_34.1C_unshiu_00363217631222409Hop-interacting protein THI043AGI-0875.684
Mf0095 OOthers O-----SI290TP Ciclev10005778mscaffold_92121674821221111J C_unshiu_00160:mRNA_34.1C_unshiu_00160290257294371Transmembrane proteins 14C, putative isoform 1KmG-032JtR-03111.958RP-0343.323
Cp0632 AAvailable marker O---OOTP Ciclev10007941mscaffold_12769893427703620J C_unshiu_00237:mRNA_7.1C_unshiu_002374093045531Protein translocase subunit SecYAGI-0856.724
Mf0097 AAvailable marker OO-OOOSI235,SI365NoAGI-0744.663KmG-0750.959JtR-0744.863NAT-073.290RP-0746.168
Bf0021 O-----TP Ciclev10031010mscaffold_410588251062698J C_unshiu_00012:mRNA_26.1C_unshiu_00012227838231495Anthranilate synthase component IRP-0752.587
Cp0635 AAvailable marker O-O-OOJ C_unshiu_00337:mRNA_4.1C_unshiu_00337115961530750S ribosomal protein L4AGI-0617.029
Bf0024 O-----SI093TP Ciclev10002093mscaffold_53813466238138860J C_unshiu_00319:mRNA_24.1C_unshiu_00319167810171973Probable protein phosphatase 2C 11AGI-0539.006
Mf0100 O-----TP Ciclev10026756mscaffold_783106158313304
Tf0376 AAvailable marker O---OOSI072TP Ciclev10022680mscaffold_385282928529236J C_unshiu_00154:mRNA_1.1C_unshiu_00154983210761CRT binding factor 3AGI-0541.853
Bf0028 DDominant marker O--O--SI001TP Ciclev10014319mscaffold_23535477635363026J C_unshiu_00048:mRNA_32.1C_unshiu_00048179733188796Soluble starch synthase III-1AGI-0617.966
Ov0002 AAvailable marker O---OOSI110,SI179TP Ciclev10032770mscaffold_424228612424838J C_unshiu_00979:mRNA_13.2C_unshiu_00979505085247860S ribosomal protein L10AGI-0713.657JtR-0768.221RP-0782.035
Cp0675 AAvailable marker O---OOTP Ciclev10030633mscaffold_42029424020301426J C_unshiu_00015:mRNA_33.1C_unshiu_00015302440309360DNA-directed RNA polymeraseAGI-0759.793
Bf0030 O-----TP Ciclev10022841mscaffold_34645289346453717J C_unshiu_00627:mRNA_10.1C_unshiu_006274521545931Calvin cycle protein CP12RP-0558.661
Bf0031 O-----TP Ciclev10031547mscaffold_440775574083819J C_unshiu_00306:mRNA_12.1C_unshiu_003065170757589Chorismate synthaseAGI-0732.590RP-0719.092
Tf0112 O-----TP Ciclev10031118mscaffold_41701458217026325J C_unshiu_00225:mRNA_9.1C_unshiu_002253709044898Regulation of nuclear pre-mRNA domain-containing protein 1BAGI-0743.014
Bf0032 O-----TP Ciclev10030771mscaffold_453789835392182
Ov0006 Bno homozygous cultivar with minor allele O-----TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S25.587JtR-0827.669
Tf0386 AAvailable marker OOO-OOSI044,SI095TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 proteinAGI-0441.367
Fb0103 OOthers O-----SI155TP Ciclev10008255mscaffold_12275871222761740J C_unshiu_00103:mRNA_27.1C_unshiu_00103160138163082GDP-L-galactose phosphorylaseAGI-0130.703JtR-01S6.418
Tf0388 O-----TP Ciclev10004533mscaffold_91199328211999324
Bf0036 AAvailable marker OO-OOOTP Ciclev10008751mscaffold_12284094722844111J C_unshiu_00103:mRNA_45.1C_unshiu_00103244231250643GrpE protein homologAGI-0129.144RP-0146.445
Fb0104 OOthers O-----TP Ciclev10016358mscaffold_23575854635760859J C_unshiu_00337:mRNA_24.1C_unshiu_00337135198136991Tropinone reductase likeAGI-0616.857RP-06.216.271
Fb0110 O-----SI246TP Ciclev10000900mscaffold_585123808517835J C_unshiu_00033:mRNA_4.1C_unshiu_000333775543368Bifunctional protein thiEDAGI-0985.810KmG-0923.401JtR-09S5.362
Bf0104 O-----J C_unshiu_01101:mRNA_8.1C_unshiu_01101776948095112-oxophytodienoate reductase 2AGI-0541.306NAT-05
Tf0393 AAvailable marker O----OTP Ciclev10002569mscaffold_52941314329414562J C_unshiu_00110:mRNA_25.1C_unshiu_00110149681150624Auxin-responsive protein IAA4RP-0929.347
Cp0741 AAvailable marker O---OOTP Ciclev10008230mscaffold_137468643749903J C_unshiu_00055:mRNA_22.1C_unshiu_00055168281172005FerrochelataseAGI-0175.964
Ov0015 OOthers O-----SI304TP Ciclev10026223mscaffold_782550468256442J C_unshiu_02827:mRNA_2.1C_unshiu_028271598617224Stem 28 kDa glycoproteinAGI-0234.494KmG-0235.126JtR-0219.319
Tf0396 Bno homozygous cultivar with minor allele O-----SI035TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60
Al0014 O-----SI058,SI153,SI312TP Ciclev10008225mscaffold_110703731072218J C_unshiu_00005:mRNA_43.1C_unshiu_00005281165283012CBL-interacting serine/threonine-protein kinase 20AGI-0197.525RP-013.295
Bf0115 O-----SI054,SI295TP Ciclev10029066mscaffold_863172056322458J C_unshiu_00484:mRNA_11.3C_unshiu_004844821654250Squalene synthaseAGI-0858.587NAT-08117.717
Fb0159 AAvailable marker O---OOSI227TP Ciclev10028241mscaffold_82345663023459052J C_unshiu_00375:mRNA_4.1C_unshiu_003752795230443O-Glycosyl hydrolases family 17 proteinAGI-0813.499KmG-089.978RP-082.327
Ov0020 AAvailable marker O---OOSI055,SI143,SI213TP Ciclev10011842mscaffold_62159842921600967J C_unshiu_00037:mRNA_7.2C_unshiu_000373771940241Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclaseAGI-0455.145KmG-0422.465NAT-043.806RP-0440.905
Bf0119 O-----TP Ciclev10005276mscaffold_91074434110746393
Fb0202 O-----TP Ciclev10027835mscaffold_82373619723740543
Tf0406 Bno homozygous cultivar with minor allele O-----TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1AGI-0128.515
Tf0410 AAvailable marker O---OOTP Ciclev10032838mscaffold_4213798215848J C_unshiu_00168:mRNA_34.1C_unshiu_00168273522275858Pollen-specific protein SF3AGI-076.146
Ov0104 AAvailable marker O---OOSI216TP Ciclev10004850mscaffold_91344033213442904J C_unshiu_02379:mRNA_2.1C_unshiu_023792290625482Obtusifoliol 14-alpha demethylaseAGI-0856.724JtR-0828.207
Tf0411 OOthers O-----TP Ciclev10020263mscaffold_33811119138116265J C_unshiu_00523:mRNA_15.1C_unshiu_00523100297104594Putative transcription factor PosF21AGI-0548.613
Bf0128 O-----TP Ciclev10025298mscaffold_733232693331038J C_unshiu_00051:mRNA_2.2C_unshiu_000512587240163Hypothetical proteinAGI-0270.082NAT-02S77.157RP-02.29.835
Ov0105 MDisagree by Marco analysis O-----SI126,SI278TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantNAT-0736.023RP-07
Al0029 Bno homozygous cultivar with minor allele O-----J C_unshiu_00305:mRNA_10.1C_unshiu_003056993873026Basic helix-loop-helix transcription factorAGI-0137.357JtR-01S50.000
Bf0136 AAvailable marker O----O
Bf0138 MDisagree by Marco analysis O-----TP Ciclev10019462mscaffold_360724606076187J C_unshiu_00428:mRNA_16.2C_unshiu_00428119232121021Oxygen-evolving enhancer protein 2, chloroplasticNAT-0514.555RP-0524.995
Al0032 O-----TP Ciclev10020029mscaffold_35084105150845732
Fb0233 O-----SI025,SI079,SI169TP Ciclev10025557mscaffold_765355226540965J C_unshiu_00437:mRNA_15.1C_unshiu_00437131524136642WD-40 repeat-containing protein MSI4AGI-0247.382
Ov0109 MDisagree by Marco analysis O-----SI172,SI202TP Ciclev10004309mscaffold_93051333330517676J C_unshiu_00003:mRNA_13.1C_unshiu_00003122283126575Elongation factor 2AGI-0371.060JtR-03213.729RP-0371.532
Tf0419 AAvailable marker OOO--OTP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHY
Bf0142 O-----TP Ciclev10024891mscaffold_785088378516759J C_unshiu_00290:mRNA_16.1C_unshiu_00290151884158772Class III homeodomain leucine zipper proteinAGI-025.104
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Bf0145 O--O--SI272,SI327,SI368TP Ciclev10027909mscaffold_82273083922737522J C_unshiu_00158:mRNA_13.1C_unshiu_00158102548109253Pseudo-response regulator 37AGI-0820.703RP-085.775
Bf0146 O-----TP Ciclev10022345mscaffold_34852882048531316J C_unshiu_00026:mRNA_37.1C_unshiu_00026280361282836RRNA-processing protein FCF1AGI-0578.274
Al0037.2Al0037.k O-----TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Fb0275 O-----TP Ciclev10008562mscaffold_11588311815887517J C_unshiu_00288:mRNA_9.1C_unshiu_002885591060461Malate dehydrogenaseAGI-0155.687
Tf0148 AAvailable marker O---OOSI119TP Ciclev10032816mscaffold_42099870821001535J C_unshiu_00010:mRNA_116.1C_unshiu_00010869802872410Putative WRKY transcription factor 75AGI-0764.812
Tf0149 HDisagree on Clementine haploid genotype O-----SI128,SI269TP Ciclev10002290mscaffold_52940084629403554J C_unshiu_00110:mRNA_26.1C_unshiu_00110160409163111Auxin-responsive protein IAA16AGI-0985.976RP-0932.826
Tf0150 AAvailable marker OO-OOOSI262TP Ciclev10028292mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Ov0117 AAvailable marker O---OOSI040TP Ciclev10010926mscaffold_61910513919113780J C_unshiu_00089:mRNA_17.1C_unshiu_00089153791161685Hypothetical proteinAGI-0466.455RP-0428.160
Tf0151 AAvailable marker O---OOSI159,SI281TP Ciclev10002917mscaffold_53535733335359897NoAGI-0960.528RP-0941.892
Ov0118 AAvailable marker O---OOSI357TP Ciclev10001621mscaffold_53429485334297359J C_unshiu_03047:mRNA_1.1C_unshiu_0304714183450Dihydrodipicolinate synthaseAGI-0434.838KmG-0936.138JtR-09S72.673NAT-0955.867
Tf0152 AAvailable marker O---OOTP Ciclev10021000mscaffold_320024272008126J C_unshiu_01105:mRNA_2.1C_unshiu_0110536818106AT-hook motif nuclear localized protein 1AGI-058.506
Tf0153 AAvailable marker O---OOTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit betaAGI-0541.267
Tf0431 AAvailable marker O----OTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-A
Tf0154 AAvailable marker O----OTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit beta
Tf0432 AAvailable marker O---OOTP Ciclev10016685mscaffold_23142045731425299J C_unshiu_00091:mRNA_39.1C_unshiu_00091370141375026Nuclear transcription factor Y subunit A-7AGI-0638.958
Bf0164 ULess informative for main cultivars O-----SI263TP Ciclev10000615mscaffold_54306044243066562J C_unshiu_00370:mRNA_39.2C_unshiu_00370217887223455Pyrophosphate-dependent phosphofructokinase alpha subunitAGI-0921.471NAT-09111.981RP-0994.065
Fb0321 MDisagree by Marco analysis O-----TP Ciclev10027873mscaffold_868344876837762J C_unshiu_00918:mRNA_1.1C_unshiu_0091850107626Arginine decarboxylase 1AGI-0856.405JtR-0825.280
Al0208 O-----TP Ciclev10001155mscaffold_54059727240598741
Fb0322 O-----TP Ciclev10030532mscaffold_432497103254808J C_unshiu_00342:mRNA_35.1C_unshiu_00342217525222590Splicing factor 3B subunit 3AGI-0714.580JtR-0764.384RP-0747.636
Fb0326 O-----TP Ciclev10002506mscaffold_54305157943053394J C_unshiu_00370:mRNA_38.1C_unshiu_00370207050209216Cell division control protein 2AGI-098.959RP-0978.225
Bf0174 O-----SI282TP Ciclev10019861mscaffold_335515423555978J C_unshiu_00120:mRNA_17.1C_unshiu_00120130029134158Atp-dependent RNA helicaseAGI-0525.049
Lp0021 AtAvailable marker O----OTP Ciclev10021502mscaffold_317716681774647J C_unshiu_00534:mRNA_8.2C_unshiu_005345350855845Aquaporin
Ov0126 MDisagree by Marco analysis O-----TP Ciclev10022482mscaffold_34681490946817474
Al0212 O-----TP Ciclev10026128mscaffold_752580455259521J C_unshiu_00288:mRNA_19.1C_unshiu_00288142758144183Mitochondrial uncoupling protein 3KmG-0243.821JtR-0230.507RP-08
Tf0163 AAvailable marker O---OOTP Ciclev10010423mscaffold_12674082226744016J C_unshiu_00105:mRNA_35.1C_unshiu_00105316978320206RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1AGI-0131.240
Fb0343 AAvailable marker O----OTP Ciclev10033061mscaffold_42505904525061910J C_unshiu_00001:mRNA_322.1C_unshiu_0000120420622044301U6 snRNA-associated Sm-like protein LSm7KmG-07
Tf0165 AAvailable marker O---OOTP Ciclev10031793mscaffold_41960547319608059J C_unshiu_00099:mRNA_19.1C_unshiu_00099154500156794Two-component response regulator ARR18AGI-0755.503
Af1255 ------TP Ciclev10006003mscaffold_92806122128063450
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Bf0180 ------TP Ciclev10028147mscaffold_82111280421117215
Cp1050 ------TP Ciclev10032471mscaffold_415378351540818
Fb0346 ------TP Ciclev10021000mscaffold_320024272008126
Ov0129Ov0129.k ------TP Ciclev10030928mscaffold_427170142719856
Tf0166 ------SI156TP Ciclev10000524mscaffold_51968257919686163J C_unshiu_00050:mRNA_13.1C_unshiu_00050140837153470Hypothetical proteinAGI-09101.351
Tf0442 ------TP Ciclev10029160mscaffold_82315829223161424
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1521 ------TP Ciclev10004680mscaffold_997997469804461
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Cp1056 ------TP Ciclev10012459mscaffold_62002437020027538
Lp0025 ------TP Ciclev10009567mscaffold_12581694925818472
Ov0301 Bno homozygous cultivar with minor allele ------SI078TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S23.526JtR-0519.932RP-0521.590
Tf0167 ------SI230,SI241,SI247TP Ciclev10030998mscaffold_41714335017147918J C_unshiu_00478:mRNA_2.1C_unshiu_004781923227824Sigma factorAGI-0746.244
Tf0443 ------TP Ciclev10012193mscaffold_658867445892919
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Cp1067 ------TP Ciclev10014572mscaffold_2188504192741
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Lp0026 ------TP Ciclev10030880mscaffold_433232093331825
Ov0302Ov0301.2 ------TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factor
Tf0444 ------TP Ciclev10029022mscaffold_81057467310578797
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Cp1081 ------TP Ciclev10024992mscaffold_778266037829404
Lp0027 ------TP Ciclev10032174mscaffold_41496725414971449
Ov0303 ------TP Ciclev10011600mscaffold_62516085125164999
Tf0169 ------TP Ciclev10004115mscaffold_922844842302268
Tf0445 ------TP Ciclev10029260mscaffold_860650926068908
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Bf0189 ------J C_unshiu_00008:mRNA_66.1C_unshiu_00008372226374586FerritinRP-0415.774
Cp1084 OOthers ------J C_unshiu_01090:mRNA_3.1C_unshiu_010902308426817Sesquiterpene synthaseAGI-0844.577
Fb0369 ------TP Ciclev10019885mscaffold_377921887795727J C_unshiu_01545:mRNA_3.1C_unshiu_015453755939424AT-rich interactive domain-containing protein 2AGI-0544.172KmG-05S30.809JtR-0516.246
Lp0028 ------TP Ciclev10014842mscaffold_22236254822366644
Ov0304 ------TP Ciclev10000702mscaffold_564823666484923
Tf0170 ------TP Ciclev10005681mscaffold_93123708931243866
Tf0446 ------TP Ciclev10020000mscaffold_34299025142995979
Af0005 ------TP Ciclev10005894mscaffold_924528532455181
Af1260 ------TP Ciclev10001188mscaffold_53886966638875561
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Cp1085 ------TP Ciclev10025935mscaffold_723900102391658J C_unshiu_00025:mRNA_42.1C_unshiu_00025337060338142Putative geranylgeranyl pyrophosphate synthase 3-likeAGI-0270.082
Fb0372 ------SI343,SI052TP Ciclev10002666mscaffold_53512321335124730J C_unshiu_00042:mRNA_34.1C_unshiu_00042237022238272Ubiquitin-fold modifier-conjugating enzyme 1AGI-0959.896
Lp0029 ------TP Ciclev10003645mscaffold_5329518331024
Tf0171 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0447 ------TP Ciclev10021000mscaffold_320024272008126
Af0006 ------TP Ciclev10001011mscaffold_53688310336887975
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Af1526 ------TP Ciclev10001454mscaffold_53885254738855263
Al0221 ------
Bf0195 ------SI369TP Ciclev10000780mscaffold_53106923731075092J C_unshiu_00422:mRNA_5.1C_unshiu_004223532240511Sodium/hydrogen exchanger 2AGI-0974.076
Cp1086 ------TP Ciclev10025935mscaffold_723900102391658
Lp0030 ------TP Ciclev10031831mscaffold_42318570323187916
Ov0306 OOthers ------SI382TP Ciclev10026199mscaffold_7224443227133NoAGI-0279.663KmG-0272.516JtR-028.671NAT-02S60.000
Tf0448 ------TP Ciclev10026715mscaffold_7252320254049
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Bf0197 ------TP Ciclev10025476mscaffold_756543765658039
Cp1093 ------TP Ciclev10009636mscaffold_11669697916699623
Fb0374 ------TP Ciclev10002014mscaffold_567773226781162
Lp0031 ------TP Ciclev10027944mscaffold_82226140822266208J C_unshiu_00639:mRNA_5.1C_unshiu_006394532149901N-terminal isoform 1AGI-089.183
Ov0307 OOthers ------TP Ciclev10015790mscaffold_249370474940138
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Af1263 ------TP Ciclev10005448mscaffold_92849434828496251
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Al0223 ------TP Ciclev10011771mscaffold_61743827017440122J C_unshiu_00008:mRNA_127.1C_unshiu_00008890026891371CBL-interacting serine/threonine-protein kinase 11RP-0417.965
Bf0200 OOthers ------SI335TP Ciclev10014367mscaffold_22902243329030724J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Cp1111 MDisagree by Marco analysis ------TP Ciclev10024860mscaffold_786034508610239J C_unshiu_00290:mRNA_28.1C_unshiu_00290241335248051Cell division protein ftsH, putative isoform 1AGI-025.054
Fb0389 ------TP Ciclev10014121mscaffold_22517966825188103J C_unshiu_00087:mRNA_31.1C_unshiu_00087209767218135Putative pesticidal crystal cry8Ba-likeAGI-0856.850
Lp0032 Bno homozygous cultivar with minor allele ------SI286J C_unshiu_00679:mRNA_13.1C_unshiu_00679124222132199CwfJ-like family protein, putative isoform 1
Ov0308 ------TP Ciclev10032476mscaffold_41673015016735004
Tf0175 ------TP Ciclev10010825mscaffold_150545515056146
Tf0450 ------TP Ciclev10021535mscaffold_35039957150401808
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Af1529 ------TP Ciclev10005711mscaffold_92122879121231253
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Bf0201 ------TP Ciclev10015180mscaffold_22937056029376244
Cp1113 ------TP Ciclev10004638mscaffold_9987368992630
Lp0033 ------TP Ciclev10016127mscaffold_23092339830926574
Ov0309 ------TP Ciclev10022230mscaffold_380786098083078
Tf0176 ------TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical proteinRP-01
Tf0451 ------TP Ciclev10011164mscaffold_61469451314700102
Af0010 ------TP Ciclev10004080mscaffold_54029749240299711
Af1265 ------TP Ciclev10031646mscaffold_42278910422792252
Af1530 ------TP Ciclev10013041mscaffold_62009203320095946
Al0225 ------TP Ciclev10001539mscaffold_54109372541097411J C_unshiu_01543:mRNA_6.1C_unshiu_015433410635343DNA glycosylase superfamily proteinKmG-019.277
Bf0202 ------TP Ciclev10000607mscaffold_52410375324107361J C_unshiu_00011:mRNA_55.1C_unshiu_00011511309514460Protein ETHYLENE INSENSITIVE 3RP-0927.641
Cp1114 ------TP Ciclev10004644mscaffold_9870926875408
Fb0478 ------TP Ciclev10008010mscaffold_11459224814596429J C_unshiu_00071:mRNA_18.1C_unshiu_00071196512200666Beta-glucosidase 44AGI-0161.025
Ov0310 ------TP Ciclev10023404mscaffold_34846339548465325J C_unshiu_00026:mRNA_46.1C_unshiu_00026334715336716Lanatoside 15-O-acetylesteraseKmG-0121.291JtR-01S61.287
Tf0177 ------SI133TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical protein
Tf0452 ------TP Ciclev10014198mscaffold_23174043131747095
Af0011 ------TP Ciclev10025929mscaffold_71135799011362560
Af1266 ------TP Ciclev10032367mscaffold_484003788404853
Af1531 ------TP Ciclev10008796mscaffold_149843404987674
Al0226 ------TP Ciclev10012002mscaffold_625719412573984
Bf0203 ------TP Ciclev10022162mscaffold_34241048242413511
Cp1115 ------TP Ciclev10005600mscaffold_9729077730936
Fb0708 ------TP Ciclev10005455mscaffold_93123708931243737J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0374.195JtR-03219.857
Lp0035 ------TP Ciclev10005111mscaffold_92725981327263097
Ov0311 ------TP Ciclev10022001mscaffold_31834116618342395J C_unshiu_00417:mRNA_9.1C_unshiu_004179342694543Kunitz trypsin inhibitorKmG-0410.598NAT-0982.730
Tf0178 ------TP Ciclev10004481mscaffold_972329597238380
Af0012 ------TP Ciclev10006108mscaffold_924587932459573
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Af1532 ------TP Ciclev10026374mscaffold_739883663989679
Al0227 ------TP Ciclev10001654mscaffold_54221793542222257
Bf0204 ------SI326TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticRP-02.29.835
Fb0722 ------TP Ciclev10008390mscaffold_11609803916100795
Lp0036 ------TP Ciclev10012725mscaffold_61299805513001834
Ov0312 ------TP Ciclev10018858mscaffold_313441921349935J C_unshiu_00541:mRNA_19.1C_unshiu_00541170170175878SpastinSA-098.022
Tf0181 ------TP Ciclev10011164mscaffold_61469451314700102
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Af1268 ------TP Ciclev10011546mscaffold_62252321322529556
Af1533 ------TP Ciclev10009600mscaffold_12211820322120791
Al0228 ------TP Ciclev10009018mscaffold_12620606326208427J C_unshiu_00315:mRNA_25.1C_unshiu_00315212819220361Serine/threonine-protein kinase HT1JtR-0347.115
Cp1144 OOthers ------TP Ciclev10028086mscaffold_826499912655756J C_unshiu_00152:mRNA_43.1C_unshiu_00152288550294174Sodium:hydrogen antiporter 1 isoform 1AGI-0870.995
Lp0037 OOthers ------TP Ciclev10025045mscaffold_71896348718968140
Ov0313 OOthers ------TP Ciclev10002372mscaffold_54184498441847835J C_unshiu_00009:mRNA_157.1C_unshiu_0000910134781016014Diphthine synthaseKmG-0979.072
Tf0183 ------TP Ciclev10021488mscaffold_33087388630877367
Tf0456 ------TP Ciclev10020156mscaffold_34485833344862278
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
Af1269 ------TP Ciclev10009375mscaffold_12704312427045483
Af1534 ------TP Ciclev10006429mscaffold_9883603885249
Al0229 ------TP Ciclev10018463mscaffold_34967535449684423
Bf0207 ------TP Ciclev10014190mscaffold_22200578322011411
Cp1162 AAvailable marker ----OOTP Ciclev10001345mscaffold_53590818135912917J C_unshiu_00255:mRNA_35.1C_unshiu_00255260170264872Phosphoribosylaminoimidazolesuccinocarboxamide synthaseAGI-0953.232RP-0969.673
Lp0038 ------TP Ciclev10029808mscaffold_866866026688894
Vs0001 ------
Af0015 ------TP Ciclev10019449mscaffold_34402177944027536J C_unshiu_00217:mRNA_10.1C_unshiu_002178639391294Hypothetical proteinAGI-0554.268
Af1270 ------TP Ciclev10011405mscaffold_61758989517593051
Af1535 ------TP Ciclev10007633mscaffold_12381411523817728
Al0230 ------
Bf0212 ------SI332TP Ciclev10016442mscaffold_292066869211152J C_unshiu_00004:mRNA_52.2C_unshiu_00004401860406444Carbonate dehydrataseAGI-06117.593
Cp1163 ------TP Ciclev10025825mscaffold_71620197116207283
Fb1121Fb1121.lg ------TP Ciclev10014991mscaffold_22263576422640239
Lp0039 ------TP Ciclev10004396mscaffold_92230997022314448
Ov0315 ULess informative for main cultivars ------TP Ciclev10013467mscaffold_62343037523436161J C_unshiu_00098:mRNA_32.2C_unshiu_00098207615213748Putative nuclear matrix constituent protein 1-like proteinKmG-047.092
Vs0002 MDisagree by Marco analysis ------SI103,SI115TP Ciclev10000046mscaffold_54118418041190033J C_unshiu_00127:mRNA_46.1C_unshiu_00127341430344325Hypothetical proteinAGI-0936.685KmG-0973.930JtR-0768.221
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Af1271 ------TP Ciclev10025653mscaffold_71332358313328683
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Al0231 ------TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609ShatterproofRP-06.17.272
Bf0213 ------SI097TP Ciclev10000820mscaffold_53769388237699178J C_unshiu_00238:mRNA_2.1C_unshiu_002381447519398DnaJ domain proteinRP-0977.126
Cp1177 ------TP Ciclev10006006mscaffold_941163564117315
Fb1134.2 ------TP Ciclev10030474mscaffold_495477079559498J C_unshiu_00140:mRNA_14.1C_unshiu_00140164689176715DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5AGI-0738.546
Lp0040 Bno homozygous cultivar with minor allele ------TP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorKmG-0252.181JtR-0225.334
Ov0316 ------TP Ciclev10020995mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43JtR-0531.749
Tf0186 ------TP Ciclev10024602mscaffold_353824905385009
Vs0003 AAvailable marker ----OOSI077J C_unshiu_00009:mRNA_117.1C_unshiu_00009675718677501Cysteine proteinase RD19aAGI-0935.312KmG-0972.447NAT-0993.467
Af0017 ------TP Ciclev10029358mscaffold_8313112317158
Af1272 ------TP Ciclev10019689mscaffold_32479635124800588
Af1537 ------TP Ciclev10009797mscaffold_184171588419377
Al0232 ------TP Ciclev10026186mscaffold_749970894999255
Bf0215 ------TP Ciclev10022088mscaffold_35079352050795340
Cp1184 ------TP Ciclev10005685mscaffold_91780995717817998
Fb1170 ------TP Ciclev10014845mscaffold_22382986223832918
Lp0041 AAvailable marker -----OTP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28KmG-03217.549JtR-03114.643RP-0329.608
Ov0317Ov0316.2 ------TP Ciclev10020995mscaffold_339630243966516
Tf0187 ------TP Ciclev10013228mscaffold_619501211950908
Vs0004 ------TP Ciclev10021761mscaffold_320786912083111J C_unshiu_00490:mRNA_23.1C_unshiu_00490182148190847Nucleosome assembly proteinKmG-0651.244
Af0018 ------TP Ciclev10000947mscaffold_54069180140694522
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Af1538 ------TP Ciclev10002528mscaffold_53392198433926087
Al0234 OOthers ------TP Ciclev10005909mscaffold_913729721374927J C_unshiu_00369:mRNA_20.1C_unshiu_003697403474546Ribosomal protein L19KmG-0316.974NAT-0347.094RP-033.219
Bf0216 ------TP Ciclev10031058mscaffold_41505892015066775
Cp1196 ------TP Ciclev10031889mscaffold_41962606119629792
Fb1227 ------TP Ciclev10004375mscaffold_933677183376062J C_unshiu_00051:mRNA_60.1C_unshiu_00051463042471084Chloride channel proteinAGI-0319.631
Lp0042 ------TP Ciclev10028234mscaffold_82134205021345004
Ov0318 ULess informative for main cultivars ------TP Ciclev10012779mscaffold_61940528519407278J C_unshiu_00273:mRNA_20.1C_unshiu_0027310325010518340S ribosomal protein S5
Tf0188 ------TP Ciclev10012285mscaffold_61577497615777653
Af1274 ------TP Ciclev10009370mscaffold_131525483153983
Af1539 ------TP Ciclev10016688mscaffold_21009730810100347
Al0235 ------TP Ciclev10009395mscaffold_12576157025764926
Lp0043 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Ov0319 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinKmG-03219.158
Tf0189 ------TP Ciclev10001738mscaffold_52137938421385293
Vs0006 ULess informative for main cultivars ------TP Ciclev10025343mscaffold_71902429519026021J C_unshiu_00468:mRNA_22.1C_unshiu_00468132124133922Cytochrome P450 78A4AGI-0227.491JtR-0250.216NAT-02S3.328
Af1004 ------TP Ciclev10008926mscaffold_12442676024434342
Af1275 ------TP Ciclev10028274mscaffold_81303517413037307
Af1540 ------TP Ciclev10006242mscaffold_9477388478920
Al0236 ------TP Ciclev10014723mscaffold_23280656532812384
Bf0219 ------TP Ciclev10029243mscaffold_82485146224854925
Cp1201 ------TP Ciclev10031397mscaffold_41941684419420948
Fb1505 ------
Lp0044 ------TP Ciclev10032981mscaffold_42361842423622719
Ov0320 ------TP Ciclev10005968mscaffold_92764007427641178J C_unshiu_00252:mRNA_13.1C_unshiu_00252892819019821 kDa proteinRP-0356.919
Tf0191 ------TP Ciclev10015847mscaffold_258214015825173
Vs0007 ------TP Ciclev10025931mscaffold_712071411210820
Af1005 ------TP Ciclev10012491mscaffold_62071559020719704
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Af1541 ------TP Ciclev10031567mscaffold_41051001810517939
Al0237 ------TP Ciclev10026739mscaffold_755230755524475
Bf0221 ------TP Ciclev10005970mscaffold_92419518024198282J C_unshiu_00132:mRNA_22.1C_unshiu_00132211597223530Hypothetical proteinAGI-0347.887RP-0337.193
Cp1213 ------TP Ciclev10015476mscaffold_21159899911601307
Fb1567 ------TP Ciclev10022690mscaffold_35063767350640392NoAGI-05103.212
Lp0045 ------
Ov0321 ------TP Ciclev10018918mscaffold_34277647942784038
Tf0193 ------TP Ciclev10007849mscaffold_12716727127171073
Vs0008 ------TP Ciclev10032306mscaffold_4947943949892
Af1006 ------TP Ciclev10005512mscaffold_92466110924664797
Af1277 ------TP Ciclev10030804mscaffold_42381151123814763
Af1542 ------TP Ciclev10015820mscaffold_21042477910427904
Al0238 ------TP Ciclev10017077mscaffold_284943698496454
Bf0224 ------TP Ciclev10012183mscaffold_62224492422252231
Cp1216 AAvailable marker ----OOTP Ciclev10017113mscaffold_21211279012113903J C_unshiu_00026:mRNA_6.1C_unshiu_000264665847677CCR proteinAGI-0676.905
Fb1611 ------SI071TP Ciclev10014570mscaffold_22703018827034752No
Lp0046 ------TP Ciclev10012884mscaffold_62427403124276658
Ov0322 ULess informative for main cultivars ------TP Ciclev10003485mscaffold_53639898836399239J C_unshiu_00241:mRNA_9.1C_unshiu_002413954640639Microsomal signal peptidase 12 kDa proteinAGI-0950.810KmG-0942.179JtR-09S62.873RP-0970.369
Tf0194 ------TP Ciclev10018639mscaffold_34299688643001548
Vs0009 ------
Af1007 ------TP Ciclev10021398mscaffold_31281473112817148
Af1278 ------TP Ciclev10009508mscaffold_169038046908960
Af1543 ------TP Ciclev10022165mscaffold_34218065042183843
Al0239 Bno homozygous cultivar with minor allele ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putative
Bf0225 ------TP Ciclev10016071mscaffold_234603703462174
Cp1221 ------TP Ciclev10016867mscaffold_21362765613629444
Lp0047 ------
Ov0323 ------TP Ciclev10005490mscaffold_955491955553148
Vs0010 ------TP Ciclev10012145mscaffold_62103591021038368
Af1008 ------TP Ciclev10006973mscaffold_924700852471703
Af1279 ------TP Ciclev10031302mscaffold_41451078714516311
Af1544 ------TP Ciclev10026596mscaffold_726229692624754
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Cp1223 ------TP Ciclev10019033mscaffold_35055920550563745
Fb1685 ------TP Ciclev10015934mscaffold_23569324935696515
Lp0048 ------TP Ciclev10022383mscaffold_34637429246377587
Ov0324 AAvailable marker -----OTP Ciclev10030198mscaffold_82257584522578398J C_unshiu_01619:mRNA_6.1C_unshiu_016191513924519Hypothetical proteinKmG-0823.615
Tf0196 ------TP Ciclev10025815mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinAGI-024.033
Vs0011 ------TP Ciclev10012145mscaffold_62103591021038368
Af1009 ------TP Ciclev10015365mscaffold_23581832735822366
Af1281 ------TP Ciclev10029683mscaffold_82036663720367616
Af1545 ------TP Ciclev10032524mscaffold_421537182155194
Al0241 ------TP Ciclev10012288mscaffold_61785784917860063
Bf0229 ------SI253TP Ciclev10004848mscaffold_91724221817245901J C_unshiu_00122:mRNA_16.1C_unshiu_00122118693122329Selenium binding proteinAGI-0346.274RP-0337.885
Cp1224 ------TP Ciclev10016280mscaffold_22389181423893095
Fb1751 ------SI264TP Ciclev10025011mscaffold_779775277984425J C_unshiu_00121:mRNA_40.1C_unshiu_00121250743257054Protein STRUBBELIG-RECEPTOR FAMILY 8
Lp0049Lp0049.k ------TP Ciclev10021491mscaffold_35073675050739959
Ov0325 ------TP Ciclev10016692mscaffold_23518059435182774J C_unshiu_00048:mRNA_54.1C_unshiu_00048359734361893SGS domain-containing proteinNAT-08248.374
Tf0197 ------TP Ciclev10012447mscaffold_61480482814808139
Vs0012 Bno homozygous cultivar with minor allele ------
Af1010 ------TP Ciclev10014106mscaffold_23165651031666206
Af1282 ------
Af1546 ------TP Ciclev10016821mscaffold_21240607812408794
Al0242 ------TP Ciclev10032030mscaffold_434375773441367
Bf0232 ------TP Ciclev10031191mscaffold_42186177421865635J C_unshiu_01346:mRNA_3.1C_unshiu_013461820622054T-complex protein 1 subunit deltaAGI-0767.250RP-076.705
Cp1225 ------TP Ciclev10025660mscaffold_71720807517211871
Fb1784 ------TP Ciclev10028959mscaffold_8445469446936J C_unshiu_02466:mRNA_2.1C_unshiu_0246625974055Class I chitinaseRP-0552.311
Lp0101 ------TP Ciclev10002394mscaffold_51599110815996585
Ov0326 ------TP Ciclev10001212mscaffold_52152243321525218
Vs0013 ------
Af1283 ------TP Ciclev10016366mscaffold_22975772329762309
Af1547 ------TP Ciclev10005907mscaffold_938647643867933
Al0243 ------TP Ciclev10013041mscaffold_62009203320095946
Cp1252 ------TP Ciclev10000164mscaffold_53061774630629437
Fb1916 ------SI336TP Ciclev10016275mscaffold_21204396912046230J C_unshiu_00026:mRNA_12.1C_unshiu_00026110679112686Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4RP-06.124.027
Tf0199 ------SI023,SI157TP Ciclev10000697mscaffold_53099481230999834J C_unshiu_00422:mRNA_12.1C_unshiu_00422116754121159Serine/threonine-protein kinase isoform 2
Vs0014 Bno homozygous cultivar with minor allele ------J C_unshiu_00375:mRNA_10.1C_unshiu_003755051551680Metallothionein
Af1012 ------TP Ciclev10026672mscaffold_71627039416272027
Af1285 ------TP Ciclev10010796mscaffold_11280759712808725
Af1548 ------TP Ciclev10012731mscaffold_62511421325116604
Al0244 ------TP Ciclev10015497mscaffold_298491339852098
Bf0401 ------TP Ciclev10019609mscaffold_33790609037910975
Cp1254 ------TP Ciclev10028147mscaffold_82111280421117215
Fb2130 ------SI069,SI117TP Ciclev10030030mscaffold_82434112924344795J C_unshiu_00021:mRNA_68.1C_unshiu_00021452003461315Hypothetical proteinAGI-0811.809KmG-0811.813
Lp0103 OOthers ------TP Ciclev10012274mscaffold_61639330916395378J C_unshiu_00332:mRNA_15.1C_unshiu_00332142648144673Pyridoxal biosynthesis lyase pdxSRP-0411.437
Ov0402 ------TP Ciclev10011849mscaffold_698475029854667
Vs0015 OOthers ------J C_unshiu_00001:mRNA_84.1C_unshiu_00001561308564986Mitochondrial outer membrane protein porin of 34 kDaAGI-09115.452KmG-0934.185JtR-09S15.823
Af1013 ------TP Ciclev10022053mscaffold_34862190948624876
Af1286 ------
Af1549 ------TP Ciclev10009920mscaffold_121845132186967
Al0245 ------TP Ciclev10005107mscaffold_92518520025188839
Bf0402 ------TP Ciclev10020232mscaffold_391372499144663J C_unshiu_00058:mRNA_19.1C_unshiu_00058104866110977TRNA-specific adenosine deaminase-like protein 3AGI-0543.970
Cp1257 ------TP Ciclev10014209mscaffold_255829275587253
Lp0104 ------TP Ciclev10017466mscaffold_22757962727581411
Vs0016 Bno homozygous cultivar with minor allele ------J C_unshiu_02110:mRNA_3.2C_unshiu_021102766028723MetallothioneinAGI-0525.980KmG-0817.483JtR-08
Af1014 ------TP Ciclev10018683mscaffold_34359463843605172
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Af1551 ------TP Ciclev10008489mscaffold_164949736502196
Al0246 ------TP Ciclev10019351mscaffold_34421533344220917
Bf0403 ------
Cp1267 MDisagree by Marco analysis ------TP Ciclev10011346mscaffold_679837887991526J C_unshiu_02325:mRNA_1.1C_unshiu_0232516429359Riboflavin biosynthesis protein RibDAGI-0894.382
Fb2159 ------SI205,SI300TP Ciclev10021136mscaffold_33960643139608387J C_unshiu_00037:mRNA_76.1C_unshiu_00037551437553057Pirin family proteinAGI-0549.856KmG-05S68.781JtR-0541.770SA-09
Ov0404 AAvailable marker -----OTP Ciclev10002415mscaffold_52976809129769281J C_unshiu_00731:mRNA_6.3C_unshiu_007312659828767Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseKmG-0929.016JtR-09S31.495RP-0929.347
Tf0202 ------TP Ciclev10032893mscaffold_436366673641089
Vs0017 ------TP Ciclev10009470mscaffold_166471586649599
Af1016 ------TP Ciclev10025840mscaffold_723944712397293
Af1288 ------TP Ciclev10016357mscaffold_23580351235805985
Af1552 ------TP Ciclev10005340mscaffold_93052706030531535
Bf0404 ------
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Gmom01 ------TP Ciclev10000531mscaffold_53327305333276013
Lp0106 ------TP Ciclev10030683mscaffold_42286897822880751
Ov0405 ------TP Ciclev10011509mscaffold_61840685618412391
Tf0203 ------SI121TP Ciclev10014039mscaffold_21045959310472483J C_unshiu_00403:mRNA_13.1C_unshiu_0040388988102135Homeodomain transcriptional regulator
Vs0018 ------TP Ciclev10026149mscaffold_746128874617115
Af1289 ------TP Ciclev10001940mscaffold_542898764293681
Af1553 ------TP Ciclev10023028mscaffold_34581258945815067
Al0248 ------TP Ciclev10028483mscaffold_81977979519784134
Bf0405 ------TP Ciclev10024721mscaffold_729945253001770
Cp1278 ------TP Ciclev10030907mscaffold_41226375512266130
Gmom02 ------TP Ciclev10015097mscaffold_243670684371625
Lp0107 ------TP Ciclev10030913mscaffold_42191659221922770
Ov0406 ------TP Ciclev10025329mscaffold_751599955165972
Tf0204 ------TP Ciclev10027848mscaffold_82358970223593390
Vt0001 AAvailable marker ----OOTP Ciclev10014290mscaffold_23562493535628855J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0616.327KmG-0668.041
Af1019 ------TP Ciclev10005635mscaffold_9192512196670
Af1290 ------TP Ciclev10029472mscaffold_82441315724415621
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Al0249 ------TP Ciclev10004782mscaffold_93049033130496586
Bf0406 ------TP Ciclev10026290mscaffold_71577309115776242
Cp1279 AAvailable marker ----OOTP Ciclev10031414mscaffold_41290077712903692J C_unshiu_00461:mRNA_17.1C_unshiu_00461144878147555Ornithine aminotransferaseAGI-0740.184
Gmom03 ------TP Ciclev10019436mscaffold_318646041871328J C_unshiu_01325:mRNA_3.1C_unshiu_01325787614474Bromo-adjacent-like (BAH) domain proteinAGI-057.888
Lp0108 AAvailable marker -----OTP Ciclev10026340mscaffold_755546195556993J C_unshiu_00761:mRNA_5.1C_unshiu_00761187042107240S ribosomal protein S6KmG-0241.508JtR-0218.351
Ov0407 AAvailable marker ----OOTP Ciclev10000563mscaffold_53704341737051080J C_unshiu_00773:mRNA_1.1C_unshiu_00773788815416OSBP(Oxysterol binding protein)-related protein 1C isoform 3AGI-0946.097KmG-0948.606JtR-09S66.176RP-0976.027
Vt0002 ------TP Ciclev10032270mscaffold_42086875020872170
Af1021 ------TP Ciclev10022113mscaffold_34066463540665640
Af1291 ------TP Ciclev10026757mscaffold_747794004780310
Af1555 ------TP Ciclev10029189mscaffold_82450207024504031
Al0250 ------TP Ciclev10031445mscaffold_42477075424773948
Bf0407 ------TP Ciclev10011592mscaffold_61072903410731466
Cp1283 ------TP Ciclev10001817mscaffold_53489110034894176
Gmom04 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.504
Ov0408 AAvailable marker -----OTP Ciclev10011522mscaffold_61849178918493623J C_unshiu_00248:mRNA_30.1C_unshiu_00248247183248778UDP-glycosyltransferase 71C4KmG-0450.902RP-0423.745
Tf0206 ------TP Ciclev10005479mscaffold_92316129423166939
Vt0003 ------TP Ciclev10027667mscaffold_881536608174407J C_unshiu_00616:mRNA_3.1C_unshiu_006161080818470Hypothetical proteinAGI-0856.724
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Af1292 ------TP Ciclev10026736mscaffold_766773146680214
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Al0251 ------TP Ciclev10021340mscaffold_366951716697430
Bf0408 ------TP Ciclev10024877mscaffold_748431574848614
Cp1292 ------TP Ciclev10025390mscaffold_722467322249558
Gmom05 ------TP Ciclev10024623mscaffold_33372293433727855
Lp0110 ------TP Ciclev10009769mscaffold_12427175324272644
Ov0409 ------TP Ciclev10022219mscaffold_347360474740432
Tf0207 ------TP Ciclev10014026mscaffold_290089209021876
Vt0004 ------TP Ciclev10005408mscaffold_998058999809222
Af1023 ------TP Ciclev10028042mscaffold_827196542725331
Af1293 ------TP Ciclev10014998mscaffold_21659779616602257
Af1558 ------TP Ciclev10005504mscaffold_92960846229612474
Al0252 ------TP Ciclev10028251mscaffold_82468998924692884
Bf0409 ------J C_unshiu_00616:mRNA_6.1C_unshiu_006167217179153Disease resistance protein (CC-NBS-LRR class) family proteinAGI-0857.386
Cp1302 ------TP Ciclev10031853mscaffold_474078347414015
Gmom06 ------TP Ciclev10012088mscaffold_620675862073007
Lp0111 ------TP Ciclev10022339mscaffold_33609600936099799
Ov0410 ------TP Ciclev10001911mscaffold_54100505441009065
Tf0208 ------SI181TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 protein
Vt0005 ------TP Ciclev10001888mscaffold_53644934636452178
Af1024 ------TP Ciclev10016735mscaffold_23584185935844177
Af1294 ------TP Ciclev10018252mscaffold_22777486327778271
Af1559 ------TP Ciclev10005333mscaffold_922118622215512
Al0256 ------TP Ciclev10028637mscaffold_81953813819541255
Bf0410 ------TP Ciclev10003680mscaffold_53291782632924241
Cp1308 AAvailable marker -O--OOTP Ciclev10011420mscaffold_663294216335005J C_unshiu_00147:mRNA_29.1C_unshiu_00147247701253232Unspecific monooxygenaseAGI-04101.201
Gmom07 ------TP Ciclev10021492mscaffold_372486277253007
Ov0411 ------TP Ciclev10011259mscaffold_62341063623414246
Tf0209 ------TP Ciclev10015591mscaffold_23564241235646764
Vt0006 ------TP Ciclev10010149mscaffold_12491488524923422
Af1025 ------TP Ciclev10019927mscaffold_34833710548339028
Af1295 ------TP Ciclev10030829mscaffold_434680833477274
Af1560 ------
Al0257Al0257.k ------TP Ciclev10008444mscaffold_12240741222409529
Bf0411 MDisagree by Marco analysis ------TP Ciclev10028317mscaffold_82186906521874083J C_unshiu_00500:mRNA_13.1C_unshiu_00500128482133656Sulfotransferase
Cp1323 ------TP Ciclev10012716mscaffold_61799256317993671
Gmom08 ------TP Ciclev10008617mscaffold_141439484146608
Lp0113 ------TP Ciclev10007510mscaffold_12448059124484723
Ov0412 OOthers ----OOSI050,SI222TP Ciclev10015053mscaffold_23103608831038222J C_unshiu_00143:mRNA_11.1C_unshiu_001436747569537SEC14 cytosolic factor family proteinAGI-0642.110KmG-0639.373JtR-06S15.372
Tf0210 ------SI183TP Ciclev10004533mscaffold_91199328211999324J C_unshiu_00926:mRNA_13.1C_unshiu_00926108384111875Zinc finger protein NUTCRACKERAGI-0856.724
Vt0007 ------TP Ciclev10019734mscaffold_34982190649825730
Af1296 ------TP Ciclev10031556mscaffold_41913359219137895
Af1561 ------TP Ciclev10009643mscaffold_124203242423040
Al0301 ------TP Ciclev10022576mscaffold_34590687945907641
Bf0412 ------NoAGI-0829.534
Cp1330 ------TP Ciclev10019667mscaffold_31489816814903449
Gmom09 ------TP Ciclev10008617mscaffold_141439484146608
Lp0114 ------TP Ciclev10008315mscaffold_12862362428626008
Ov0413 ------TP Ciclev10028322mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeKmG-0734.263
Tf0211 ------TP Ciclev10008192mscaffold_12860732528610917
Vt0008 ------TP Ciclev10019736mscaffold_34925639049259083
Af1297 ------TP Ciclev10013207mscaffold_62331186723313814
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Al0302 AAvailable marker -O--OOSI090,SI311TP Ciclev10004372mscaffold_92507369325080376J C_unshiu_00119:mRNA_33.1C_unshiu_00119346131352710Putative seed imbibition proteinAGI-0348.375KmG-03218.339JtR-033NAT-033.773RP-0336.113
Bf0413 ------J C_unshiu_00293:mRNA_16.1C_unshiu_00293231743233897Hypothetical proteinAGI-0986.996
Cp1334 MDisagree by Marco analysis ------J C_unshiu_01048:mRNA_12.1C_unshiu_010488738690179Phosphoribosylformylglycinamidine cyclo-ligaseAGI-0346.968
Gmom11 ------TP Ciclev10019184mscaffold_3680835684433
Lp0115 ------TP Ciclev10028775mscaffold_81780942817813065
Ov0414Ov0413.2 ------TP Ciclev10028322mscaffold_81780942817813065
Tf0212 ------SI196TP Ciclev10030538mscaffold_41981680019825304J C_unshiu_00535:mRNA_20.1C_unshiu_00535166525174142Putative nuclear matrix constituent protein 1-like proteinAGI-0756.586
Vt0009 ------TP Ciclev10012382mscaffold_62493248124935909J C_unshiu_00135:mRNA_6.1C_unshiu_001352589128913Major intrinsic protein (MIP) family transporterAGI-0438.770KmG-0414.707
Af1298 ------TP Ciclev10005845mscaffold_920372732040825
Af1562b ------TP Ciclev10026749mscaffold_715307131532413
Al0303 ------TP Ciclev10029291mscaffold_82443106424433341
Bf0414 ------TP Ciclev10014446mscaffold_277195507723396
Cp1336 ------TP Ciclev10032697mscaffold_433359453338632
Gmom12 ------TP Ciclev10009761mscaffold_12560450925605857
Lp0116 Bno homozygous cultivar with minor allele ------TP Ciclev10028879mscaffold_81939729419398741J C_unshiu_02034:mRNA_3.1C_unshiu_0203475738901DUF3049 family proteinJtR-0818.207NAT-0547.659
Ov0415 ------TP Ciclev10007121mscaffold_923390772341173
Vt0010 ------TP Ciclev10020141mscaffold_34856024548562027
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1299 ------TP Ciclev10017055mscaffold_22763816327639131
Af1564 ------TP Ciclev10015917mscaffold_22620663526210648
Al0304 MDisagree by Marco analysis ------SI259,SI293TP Ciclev10013536mscaffold_62261697922619271J C_unshiu_00038:mRNA_27.1C_unshiu_00038174815175255Nutrient reservoir, putativeAGI-0446.361KmG-0416.744NAT-04RP-0454.617
Bf0415 ------J C_unshiu_00643:mRNA_7.1C_unshiu_00643115076117637BEL1-like homeodomain protein 1AGI-0846.736
Cp1340 ------TP Ciclev10032342mscaffold_4125954131376
Gmom13 ------TP Ciclev10005787mscaffold_91322303413225922J C_unshiu_00620:mRNA_11.2C_unshiu_00620118042120892Ethylene-responsive transcription factor ERF114AGI-0856.724
Lp0117 ------TP Ciclev10002215mscaffold_52881531428816638
Ov0416 ------TP Ciclev10004279mscaffold_92480794824823388
Tf0214 ------SI020TP Ciclev10020053mscaffold_35013383750139049J C_unshiu_00014:mRNA_67.1C_unshiu_00014458017462942Transcription factor UNE10
Vt0011 AAvailable marker ----OOTP Ciclev10021162mscaffold_31298441112986574J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0541.306JtR-0537.780
Af1030 ------TP Ciclev10026876mscaffold_739307883932748
Af1300 ------TP Ciclev10008203mscaffold_185396478542949
Af1565 ------TP Ciclev10008210mscaffold_12187502221879839
Al0305 ------TP Ciclev10021551mscaffold_34720005547201893
Bf0416 ------TP Ciclev10020574mscaffold_32076297420770394
Cp1352 ------TP Ciclev10032297mscaffold_481987878204052
Gmom15 ------
Lp0118 MDisagree by Marco analysis ------J C_unshiu_00008:mRNA_8.1C_unshiu_000084636354318Protein trichome birefringence-like 33AGI-0273.759KmG-0275.522JtR-0224.745
Ov0417 ------TP Ciclev10007609mscaffold_1851900857695
Tf0215 ------TP Ciclev10001099mscaffold_54303692543044008
Vt0012 ------TP Ciclev10007708mscaffold_118061791809814
Af1301 ------TP Ciclev10025759mscaffold_7866845870030
Af1566 ------TP Ciclev10011855mscaffold_61534613515348332
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Bf0417 ------TP Ciclev10009842mscaffold_1693215695933
Cp1361 AAvailable marker ----OOTP Ciclev10013042mscaffold_62171471621717652J C_unshiu_01167:mRNA_14.1C_unshiu_01167790368180850S ribosomal 5 alpha, chloroplasticAGI-0452.740
Gmom16 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.007
Lp0119 AAvailable marker ----OOSI276TP Ciclev10028631mscaffold_82431572024317671J C_unshiu_00021:mRNA_65.1C_unshiu_00021426040431920Hypothetical proteinAGI-088.544
Ov0418 ------TP Ciclev10015900mscaffold_21186390611865549
Tf0216 ------TP Ciclev10002569mscaffold_52941314329414562
Vt0013 ------TP Ciclev10008981mscaffold_11312328013126173
Af1302 ------TP Ciclev10031454mscaffold_41445776614462726
Af1567 ------TP Ciclev10016663mscaffold_22275934122763218
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Bf0418 ------TP Ciclev10002049mscaffold_53848925738490776
Cp1362 ------TP Ciclev10011842mscaffold_62159842921600967
Gmom17 ------TP Ciclev10019228mscaffold_34747618847479361
Ov0419 AAvailable marker -----OTP Ciclev10011593mscaffold_61670917916712039J C_unshiu_00008:mRNA_31.2C_unshiu_00008178086180944Pyruvate decarboxylaseRP-0411.143
Tf0217 ------TP Ciclev10001508mscaffold_53491079434916593
Vt0014 ------TP Ciclev10029694mscaffold_82110297921105476
Af1303 ------TP Ciclev10009361mscaffold_12281092922812161
Af1568 ------J C_unshiu_00591:mRNA_15.1C_unshiu_00591108974112318Putative elongation factor 2-likeAGI-0124.954
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Bf0419 ------TP Ciclev10012995mscaffold_686966948697639
Cp1366 AAvailable marker -----O
Gmom19 ------TP Ciclev10011554mscaffold_62145081121454133J C_unshiu_00037:mRNA_27.1C_unshiu_00037166873170276Protein CCA1AGI-0454.804
Lp0121 ------TP Ciclev10017090mscaffold_23482930034831997
Ov0420 MDisagree by Marco analysis ------TP Ciclev10019489mscaffold_32484038624845254J C_unshiu_00286:mRNA_25.1C_unshiu_00286176709181573Methylenetetrahydrofolate reductase (NAD(P)H)AGI-0541.306JtR-0541.208
Tf0218 ------TP Ciclev10014499mscaffold_23148981131497594
Vt0015 ------TP Ciclev10025952mscaffold_724414522443391J C_unshiu_00025:mRNA_49.1C_unshiu_00025381829383760HexosyltransferaseAGI-0270.082KmG-0267.054JtR-0221.082
Af1034 ------TP Ciclev10013228mscaffold_619501211950908
Af1304 ------TP Ciclev10019494mscaffold_322104852215202
Af1569 ------TP Ciclev10031754mscaffold_42319247223198396
Bf1176 ------TP Ciclev10033000mscaffold_42431210824313141
Cp1369 ------TP Ciclev10031159mscaffold_42473705024741836
Gmom22 ------TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1AGI-0778.469KmG-072.659
Ov0421Ov0420.2 ------TP Ciclev10019489mscaffold_32484038624845254
Vt0016 ------TP Ciclev10011403mscaffold_61797482817979364
Af1305 ------TP Ciclev10029439mscaffold_81976007719761961
Af1570 ------TP Ciclev10009899mscaffold_146015884603705
Al0310Al0309.2 ------TP Ciclev10022019mscaffold_34490005944900865
Bf1181 ------
Cp1405 ------TP Ciclev10021000mscaffold_320024272008126
Gmom23 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1KmG-0220.942
Lp0123 ------TP Ciclev10000541mscaffold_53288961432896199
Ov0422 AAvailable marker -----OTP Ciclev10016314mscaffold_21107158711074479J C_unshiu_00184:mRNA_33.1C_unshiu_0018429595329873614-3-3-like protein GF14 muRP-06.128.576
Tf0220 ------TP Ciclev10013334mscaffold_62365725623657810
Vt0017 ------TP Ciclev10031431mscaffold_42370552323709604
Af1306 ------TP Ciclev10014843mscaffold_22896866828973736
Af1571 ------TP Ciclev10010323mscaffold_12453306424536628
Al0311 ------TP Ciclev10020637mscaffold_354563365459361
Bf1182.2 ------NoAGI-0356.391
Cp1407 ------TP Ciclev10031886mscaffold_42124308521244983
Gmom24 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1AGI-0219.971
Lp0124 ------TP Ciclev10015245mscaffold_21008752310092758
Tf0221 ------SI057,SI225TP Ciclev10025996mscaffold_7490750492882J C_unshiu_00488:mRNA_7.1C_unshiu_004884481348259Ankyrin repeat domain-containing protein, chloroplasticAGI-0281.212
Vt0018 ------TP Ciclev10016206mscaffold_22247120822474774
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Af1307 ------TP Ciclev10005707mscaffold_953105135314498
Af1572 ------TP Ciclev10027884mscaffold_82208423222091205
Al0312 ------TP Ciclev10021037mscaffold_341449394148359
Bf1185 ------TP Ciclev10003304mscaffold_54099352040993992NoAGI-09
Cp1412 ------TP Ciclev10021694mscaffold_34721742847221472
Gmom26 ------TP Ciclev10005911mscaffold_9713868716708J C_unshiu_00007:mRNA_76.1C_unshiu_00007473625476336Prefoldin subunit 3AGI-0310.918
Lp0125 ------TP Ciclev10004499mscaffold_91115075811155385
Ov0424 ------TP Ciclev10029115mscaffold_82348048323484398
Tf0222 ------TP Ciclev10008882mscaffold_12878216928786731
Vt0019 ------TP Ciclev10002927mscaffold_54191353641914321
Af1038 ------
Af1308 ------TP Ciclev10025747mscaffold_71362550413630800
Af1573 ------TP Ciclev10026597mscaffold_71116335911165487
Bf1186 ------SI245TP Ciclev10012047mscaffold_62191243821917736J C_unshiu_00079:mRNA_40.1C_unshiu_00079278696283911R3H domain-containing protein 2
Cp1427 AAvailable marker ----OOTP Ciclev10021746mscaffold_34557686345579197J C_unshiu_00326:mRNA_5.1C_unshiu_003262307325265Bifunctional protein FolDAGI-0558.917
Gmom27 ------TP Ciclev10032012mscaffold_41604632216048971
Ov0425 Bno homozygous cultivar with minor allele ------SI051,SI291,SI351,SI371TP Ciclev10015385mscaffold_240211674024377J C_unshiu_00992:mRNA_13.1C_unshiu_009927900882132DnaJAGI-0741.317RP-0725.534
Tf0223 ------TP Ciclev10028561mscaffold_82377430923780334
Vt0020 ------TP Ciclev10032461mscaffold_419701291972842