Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
Ov0313 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41844984 | 41847835 | ![]() | C_unshiu_00009 | 1013478 | 1016014 | Diphthine synthase | KmG-09 | 79.072 | ||||||||||
Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | ![]() ![]() | scaffold_5 | 41184180 | 41190033 | ![]() | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
Al0618 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 40872793 | 40877775 | ![]() | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | ![]() | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | ![]() ![]() | scaffold_5 | 40628244 | 40630241 | ![]() | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
Gn0021 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 39630111 | 39635609 | ![]() | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
If0211 | AAvailable marker | - | - | - | - | O | O | SI226 | No | AGI-09 | 47.410 | KmG-09 | 60.856 | |||||||||||||||
Fb0138 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38499024 | 38504883 | ![]() | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
Wy0003 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37189653 | 37192231 | ![]() | C_unshiu_00144 | 215223 | 217733 | Aminotransferase | AGI-09 | 46.823 | KmG-09 | 52.581 | NAT-09 | 69.467 | ||||||
Ov0407 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37043417 | 37051080 | ![]() | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
Wy0030 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 36229310 | 36230518 | ![]() | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36398988 | 36399239 | ![]() | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
Bf0218 | O | - | - | - | - | - | SI232 | ![]() ![]() | scaffold_5 | 36036990 | 36048487 | ![]() | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | ![]() ![]() | scaffold_5 | 34294853 | 34297359 | ![]() | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
Vs0015 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
Ov0404 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_5 | 29768091 | 29769281 | ![]() | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
Al0612 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29481817 | 29485113 | ![]() | C_unshiu_01370 | 27014 | 30283 | UDP-glucuronic acid decarboxylase 1 | KmG-09 | 28.332 | JtR-09S | 32.873 | ||||||||
Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | ![]() | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
Fb0110 | O | - | - | - | - | - | SI246 | ![]() ![]() | scaffold_5 | 8512380 | 8517835 | ![]() | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
Fb0373 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6404463 | 6435349 | ![]() | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
Ks9003 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_2 | 8436110 | 8440408 | ![]() | C_unshiu_00494 | 7014 | 11146 | Ascorbate oxidase | KmG-09 | 19.560 | JtR-09S | 5.836 | ||||||||
Gn0019 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 26949951 | 26952841 | ![]() | C_unshiu_02041 | 18003 | 20672 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 | KmG-09 | 17.972 | JtR-09S | 22.316 | |||||||||
Lp0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 16971264 | 16973312 | ![]() | C_unshiu_00122 | 389000 | 391027 | Adenosylhomocysteinase | KmG-09 | 15.606 | |||||||||||
Ov0111 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 8532280 | 8539677 | ![]() | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
Al0331 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 8406632 | 8407188 | ![]() | C_unshiu_00111 | 83531 | 84087 | Hypothetical protein | KmG-09 | 9.593 | JtR-07 | 52.611 | RP-07 | 19.079 | ||||||
Al0419 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ![]() | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
Ov0526 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21522433 | 21525218 | ![]() | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | KmG-09 | JtR-09S | 0.758 | NAT-09 | ||||||||
Al0247 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2227827 | 2230752 | ![]() | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2561845 | 2563605 | ![]() | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
Ov0401 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28736008 | 28740315 | No | KmG-08 | 58.635 | SA-06 | |||||||||||||
Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | ![]() ![]() | scaffold_8 | 8176371 | 8177435 | ![]() | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
Gn0030 | MDisagree by Marco analysis | - | - | - | - | - | - | AGI-08 | 37.823 | KmG-08 | 37.758 | NAT-082 | 30.069 | |||||||||||||||
Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | ![]() ![]() | scaffold_8 | 21953129 | 21960709 | ![]() | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
Ov0324 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_8 | 22575845 | 22578398 | ![]() | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
Fb2130 | - | - | - | - | - | - | SI069,SI117 | ![]() ![]() | scaffold_8 | 24341129 | 24344795 | ![]() | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | ![]() ![]() | scaffold_8 | 23456630 | 23459052 | ![]() | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | ![]() ![]() | scaffold_8 | 24721937 | 24724569 | ![]() | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | ![]() ![]() | scaffold_4 | 16232756 | 16233365 | ![]() | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
Ov0505 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 16626338 | 16629094 | ![]() | C_unshiu_00250 | 82573 | 84397 | Tyrosine decarboxylase | KmG-07 | 53.887 | JtR-07 | 48.672 | NAT-07 | 3.814 | ||||||
Mf0097 | AAvailable marker | O | O | - | O | O | O | SI235,SI365 | No | AGI-07 | 44.663 | KmG-07 | 50.959 | JtR-07 | 44.863 | NAT-07 | 3.290 | RP-07 | 46.168 | |||||||||
Ks9013 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18947498 | 18950949 | ![]() | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | KmG-07 | 45.284 | JtR-07 | 39.119 | |||||||||
Vt0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18947498 | 18950949 | ![]() | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
If0223 | AAvailable marker | - | - | - | - | O | O | No | AGI-02 | 76.168 | KmG-07 | 43.554 | JtR-02 | 13.208 | NAT-02S | 71.420 | ||||||||||||
Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | ![]() ![]() | scaffold_4 | 19467669 | 19468803 | ![]() | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
Ov0413 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ![]() | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
Gn0063 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40937725 | 40942854 | ![]() | C_unshiu_00735 | 99621 | 103733 | Violaxanthin de-epoxidase | AGI-08 | 60.140 | KmG-07 | 31.750 | ||||||||
Al0638 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8662041 | 8665543 | ![]() | C_unshiu_00221 | 6658 | 10157 | VHS domain-containing protein | KmG-07 | 23.435 | JtR-07 | 17.224 | NAT-07 | 24.049 | ||||||
Ov0105.2 | Ov0106.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23552856 | 23556415 | ![]() | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | AGI-07 | 74.064 | KmG-07 | 15.390 | JtR-07 | 5.947 | ||||||
Al0408 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23737757 | 23740513 | ![]() | C_unshiu_00001 | 727392 | 729266 | F-box/kelch-repeat protein SKIP11 | AGI-07 | 75.917 | KmG-07 | 13.235 | JtR-07 | 1.788 | |||||||
Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
Gmom22 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
Fb0343 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_4 | 25059045 | 25061910 | ![]() | C_unshiu_00001 | 2042062 | 2044301 | U6 snRNA-associated Sm-like protein LSm7 | KmG-07 | |||||||||||
Vt0001 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35624935 | 35628855 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ![]() | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
If0002 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35546692 | 35549207 | ![]() | C_unshiu_01497 | 10215 | 14601 | YggS family pyridoxal phosphate enzyme | AGI-06 | 19.002 | KmG-06 | 62.901 | ||||||||
Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | ![]() ![]() | scaffold_2 | 35212691 | 35214865 | ![]() | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
Al0633 | OOthers | O | - | - | - | - | O | SI123 | ![]() ![]() | scaffold_2 | 33837403 | 33842156 | ![]() | C_unshiu_00002 | 901824 | 911260 | Vascular plant one zinc finger protein isoform 1 | KmG-06 | 55.857 | JtR-06S | 59.645 | NAT-06S | 51.106 | RP-06.2 | 27.837 | |||
Vs0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2078691 | 2083111 | ![]() | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32640743 | 32643349 | ![]() | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | ![]() ![]() | scaffold_2 | 31036088 | 31038222 | ![]() | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
Al0614 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44987719 | 44991534 | ![]() | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ![]() | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
Al0602 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_2 | 27141148 | 27141869 | ![]() | C_unshiu_00017 | 304994 | 305523 | Hypothetical protein | KmG-06 | 18.450 | JtR-06S | 3.805 | ||||||||
Al0224 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_2 | 26630154 | 26632900 | ![]() | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
Al0635 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 26435540 | 26438838 | ![]() | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ![]() | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
Mf0099 | OOthers | - | - | - | - | - | - | No | KmG-06 | 6.822 | JtR-06S | NAT-06S | ||||||||||||||||
Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | ![]() ![]() | scaffold_2 | 14143537 | 14146003 | ![]() | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
Wy0005 | DDominant marker | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48337105 | 48339028 | No | AGI-05 | 83.570 | KmG-05S | 122.932 | ||||||||||||
Ov0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2933121 | 2937460 | ![]() | C_unshiu_00092 | 356984 | 361021 | Aldehyde dehydrogenase | KmG-05S | 100.000 | |||||||||||
Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | ![]() ![]() | scaffold_3 | 46814909 | 46817474 | ![]() | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
Gn0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46011238 | 46017249 | ![]() | C_unshiu_00139 | 135708 | 141900 | Sucrose synthase | KmG-05S | 78.527 | |||||||||||
Mf0055 | DDominant marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45551345 | 45552620 | ![]() | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
Mf0041 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45076821 | 45080633 | ![]() | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
Al0309 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | ![]() | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
Fb2159 | - | - | - | - | - | - | SI205,SI300 | ![]() ![]() | scaffold_3 | 39606431 | 39608387 | ![]() | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42229224 | 42231230 | ![]() | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
Ov0122 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41636616 | 41641083 | ![]() | C_unshiu_01535 | 14018 | 19080 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | KmG-05S | 65.738 | JtR-05 | 41.268 | ||||||||
Al0605 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41434064 | 41437122 | ![]() | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43447942 | 43449920 | ![]() | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44202968 | 44205663 | ![]() | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
Lp0133 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ![]() | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | ![]() ![]() | scaffold_3 | 13810497 | 13813004 | ![]() | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
Ov0112 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 33252463 | 33253730 | ![]() | C_unshiu_01571 | 43836 | 45084 | Sulfotransferase | KmG-05S | 42.335 | RP-05 | 53.076 | ||||||||
Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | ![]() ![]() | scaffold_3 | 30648732 | 30651259 | ![]() | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
Lp0145 | - | - | - | - | - | - | ![]() | C_unshiu_01491 | 47122 | 50568 | Class I glutamine amidotransferase superfamily protein | KmG-05S | 40.802 | JtR-05 | ||||||||||||||
Lp0009 | DDominant marker | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30171791 | 30177202 | ![]() | C_unshiu_00134 | 71410 | 76705 | Phosphatase 2C 76 isoform 1 | KmG-05S | 36.573 | JtR-05 | 12.427 | ||||||||
Ov0427 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | ![]() | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | ![]() | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
Fb0369 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7792188 | 7795727 | ![]() | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
Ov0006 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 25.587 | JtR-08 | 27.669 | ||||||||
Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
Gn0050 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5382490 | 5385009 | ![]() | C_unshiu_00014 | 637698 | 638678 | CRT binding factor 3 | AGI-05 | 29.035 | KmG-05S | 21.884 | JtR-05 | 19.008 | |||||||
Wy0018 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 5318874 | 5321054 | ![]() | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
Wy0006 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4903592 | 4905871 | ![]() | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | KmG-05S | 19.072 | JtR-05 | 19.698 | NAT-05 | 21.803 | |||||||
Al0317 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ![]() | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
Gn0041 | AAvailable marker | - | - | - | - | - | O | ![]() | C_unshiu_00123 | 116817 | 119061 | Homeobox-leucine zipper protein HAT5 | KmG-05S | 9.772 | JtR-05 | 28.396 | ||||||||||||
Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | ![]() | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
Al0217 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI350 | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | No | KmG-05S | JtR-05 | 25.182 | ||||||||||||
Mf0084 | OOthers | - | - | - | - | - | - | SI383 | ![]() ![]() | scaffold_6 | 40381 | 43868 | ![]() | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
Gn0054 | - | - | - | - | - | - | AGI-08 | 95.075 | KmG-04 | 64.581 | ||||||||||||||||||
Ov0510 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10016564 | 10019369 | ![]() | C_unshiu_00279 | 116848 | 119657 | Phenylalanine ammonia-lyase 1 | KmG-04 | 62.284 | JtR-04 | 3.789 | ||||||||
Ov0502 | - | - | - | - | - | - | ![]() | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
Mf0072 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | ![]() | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
Ov0408 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 18491789 | 18493623 | ![]() | C_unshiu_00248 | 247183 | 248778 | UDP-glycosyltransferase 71C4 | KmG-04 | 50.902 | RP-04 | 23.745 | ||||||||
Gn0047 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18741181 | 18744166 | ![]() | C_unshiu_00139 | 204645 | 207518 | Squamosa promoter-binding-like protein 9 | KmG-04 | 48.092 | |||||||||||
Wy0016 | - | - | - | - | - | - | SI068 | ![]() ![]() | scaffold_6 | 18491789 | 18493623 | ![]() | C_unshiu_01309 | 21942 | 23382 | UDP-glycosyltransferase 71B1 | KmG-04 | 47.990 | ||||||||||
Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | ![]() ![]() | scaffold_6 | 16909492 | 16912088 | ![]() | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
Al0402 | AAvailable marker | O | - | - | - | O | O | ![]() | C_unshiu_00008 | 564906 | 567158 | Peptide upstream ORF protein, putative | AGI-08 | 81.190 | KmG-04 | 44.163 | NAT-04 | 28.388 | ||||||||||
Ks9010 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 29460866 | 29463385 | ![]() | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
Al0514 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ![]() | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | KmG-04 | 32.217 | ||||||||||
Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | ![]() ![]() | scaffold_6 | 21137783 | 21142157 | ![]() | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
Gn0009 | AAvailable marker | - | - | - | - | O | O | AGI-04 | 57.369 | KmG-04 | 27.843 | |||||||||||||||||
Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ![]() | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | ![]() ![]() | scaffold_6 | 22616979 | 22619271 | ![]() | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
Vt0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24932481 | 24935909 | ![]() | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
Wy0040 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ![]() | C_unshiu_00001 | 1378378 | 1380557 | Hypothetical protein | KmG-04 | 12.855 | ||||||||||
Ov0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 18341166 | 18342395 | ![]() | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
Al0313 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 23966039 | 23969583 | ![]() | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23430375 | 23436161 | ![]() | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
Ov0513 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ![]() | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | ![]() ![]() | scaffold_6 | 24082263 | 24084635 | ![]() | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
Al0020 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23364303 | 23366061 | ![]() | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | KmG-04 | |||||||||||
Ov0512 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27198508 | 27199642 | ![]() | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | ![]() ![]() | scaffold_9 | 7579900 | 7583093 | ![]() | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
Ov0319 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ![]() | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | KmG-032 | 19.158 | |||||||||||
Ov0013 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 18058387 | 18060752 | ![]() | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
Ov0114 | - | - | - | - | - | - | ![]() | C_unshiu_00206 | 75980 | 77488 | Nucleoside diphosphate kinase | KmG-032 | 18.485 | JtR-031 | 11.761 | |||||||||||||
Mf0067 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7264569 | 7269002 | ![]() | C_unshiu_00837 | 91807 | 96079 | Protein phosphatase 1 regulatory subunit pprA | KmG-032 | 18.460 | JtR-031 | 13.247 | ||||||||
Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | ![]() ![]() | scaffold_9 | 25073693 | 25080376 | ![]() | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
Lp0041 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_9 | 6354796 | 6356630 | ![]() | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | KmG-032 | 17.549 | JtR-031 | 14.643 | RP-03 | 29.608 | ||||||
Gn0052 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 10357084 | 10359834 | ![]() | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | KmG-032 | 15.450 | JtR-031 | 12.830 | |||||||||
Wy0032 | OOthers | O | - | - | - | O | O | ![]() ![]() | scaffold_9 | 10357084 | 10359834 | ![]() | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
Wy0012 | O | - | - | - | - | O | ![]() ![]() | scaffold_9 | 4888531 | 4892972 | ![]() | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | KmG-032 | 11.250 | JtR-031 | 4.898 | NAT-03 | 11.970 | |||||||
Mf0095 | OOthers | O | - | - | - | - | - | SI290 | ![]() ![]() | scaffold_9 | 21216748 | 21221111 | ![]() | C_unshiu_00160 | 290257 | 294371 | Transmembrane proteins 14C, putative isoform 1 | KmG-032 | JtR-031 | 11.958 | RP-03 | 43.323 | ||||||
Fb0827 | O | - | - | - | - | - | SI215,SI301 | ![]() ![]() | scaffold_9 | 2353442 | 2357780 | ![]() | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
Mf0047 | DDominant marker | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1685407 | 1687081 | ![]() | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
Al0234 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1372972 | 1374927 | ![]() | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
Al0628 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28974337 | 28977865 | ![]() | C_unshiu_00045 | 547196 | 550605 | O-glucosyltransferase rumi like | KmG-031 | 5.650 | |||||||||||
Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | ![]() ![]() | scaffold_9 | 2732900 | 2738896 | ![]() | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
Fb0995 | OOthers | O | - | - | - | - | - | SI026 | ![]() ![]() | scaffold_7 | 1180019 | 1202408 | ![]() | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
If0010 | AAvailable marker | O | - | - | - | O | - | ![]() ![]() | scaffold_7 | 1264965 | 1266960 | ![]() | C_unshiu_00218 | 63403 | 65018 | 60S ribosomal protein L8 | AGI-02 | 73.759 | KmG-02 | 76.687 | JtR-02 | 10.849 | NAT-02S | 71.041 | ||||
Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
Ov0306 | OOthers | - | - | - | - | - | - | SI382 | ![]() ![]() | scaffold_7 | 224443 | 227133 | No | AGI-02 | 79.663 | KmG-02 | 72.516 | JtR-02 | 8.671 | NAT-02S | 60.000 | |||||||
Vt0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2441452 | 2443391 | ![]() | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | ![]() ![]() | scaffold_2 | 33216839 | 33219042 | ![]() | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
Lp0126 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3946818 | 3949964 | ![]() | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
Ov0116 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3193875 | 3196468 | ![]() | C_unshiu_00342 | 154980 | 164222 | Hypothetical protein | KmG-02 | 53.208 | JtR-02 | 27.051 | RP-02.2 | 5.192 | |||||||
Lp0040 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3674156 | 3676384 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | KmG-02 | 52.181 | JtR-02 | 25.334 | ||||||||
Mf0094 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3721375 | 3722616 | ![]() | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4575503 | 4577125 | ![]() | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
Al0409 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI201,SI252 | ![]() ![]() | scaffold_7 | 5042508 | 5046271 | No | AGI-02 | 50.758 | KmG-02 | 44.930 | JtR-02 | 29.462 | NAT-02S | 90.742 | |||||||
Al0212 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5258045 | 5259521 | ![]() | C_unshiu_00288 | 142758 | 144183 | Mitochondrial uncoupling protein 3 | KmG-02 | 43.821 | JtR-02 | 30.507 | RP-08 | ||||||||
Lp0108 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_7 | 5554619 | 5556993 | ![]() | C_unshiu_00761 | 18704 | 21072 | 40S ribosomal protein S6 | KmG-02 | 41.508 | JtR-02 | 18.351 | ||||||||
Gn0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6011523 | 6014015 | ![]() | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
Al0620 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7796591 | 7799786 | ![]() | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | KmG-02 | 36.964 | JtR-02 | 17.013 | ||||||||
Ov0015 | OOthers | O | - | - | - | - | - | SI304 | ![]() ![]() | scaffold_7 | 8255046 | 8256442 | ![]() | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
Al0210 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6747139 | 6750382 | ![]() | C_unshiu_00166 | 205256 | 208771 | Eukaryotic initiation factor 4A-10 | KmG-02 | 34.998 | JtR-02 | 15.126 | ||||||||
Al0401 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13180567 | 13191638 | ![]() | C_unshiu_01698 | 39336 | 40206 | Hypothetical protein | KmG-02 | 26.204 | JtR-02 | -6.043 | NAT-02S | 22.960 | ||||||
Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | ![]() ![]() | scaffold_2 | 290799 | 294122 | ![]() | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
Gmom23 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
Ov0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20360086 | 20363290 | ![]() | C_unshiu_00650 | 86670 | 89289 | Myo-inositol-1 phosphate synthase | KmG-02 | 17.680 | NAT-02S | ||||||||||
Gn0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 5053540 | 5061039 | ![]() | C_unshiu_00616 | 99349 | 106841 | V-type H+-transporting ATPase subunit A | AGI-08 | 84.345 | KmG-02 | 16.986 | |||||||||
Lp0004 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15376818 | 15378771 | ![]() | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
Lp0140 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32629908 | 32634194 | ![]() | C_unshiu_00070 | 393864 | 397918 | Universal stress protein A-like protein | KmG-02 | 12.229 | JtR-02 | 2.765 | RP-02 | 8.172 | ||||||
Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
Mf0090 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
Lp0019 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20922631 | 20924709 | ![]() | C_unshiu_00622 | 28630 | 30583 | 50S ribosomal protein L29, chloroplastic | KmG-02 | 4.377 | JtR-02 | -6.938 | ||||||||
Fb0133 | - | - | - | - | - | - | ![]() | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
Fb0365 | O | - | - | - | - | - | SI036,SI320 | ![]() ![]() | scaffold_7 | 20872462 | 20874659 | ![]() | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | ![]() ![]() | scaffold_1 | 18068297 | 18070262 | ![]() | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
Al0639 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 41703787 | 41708779 | ![]() | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
Mf0033 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_1 | 6227617 | 6228389 | ![]() | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
Wy0008 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 9297360 | 9299641 | No | AGI-01 | 57.863 | KmG-01 | 43.003 | JtR-01S | 99.300 | ||||||||||
Al0513 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8046181 | 8049306 | ![]() | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
Al0525 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254023 | ![]() | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
Ov0515 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 14878427 | 14882285 | ![]() | C_unshiu_01955 | 21970 | 26584 | DUF760 family protein | KmG-01 | 40.558 | |||||||||||
Al0619 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2234066 | 2238313 | ![]() | C_unshiu_00311 | 55933 | 60057 | TLP domain class transcription factor | AGI-01 | 57.863 | KmG-01 | 39.698 | |||||||||
Al0209 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 18298599 | 18300295 | ![]() | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | KmG-01 | 37.230 | JtR-01S | 88.382 | ||||||||
If0216 | OOthers | O | - | - | - | - | - | SI174 | ![]() ![]() | scaffold_2 | 12876952 | 12881843 | ![]() | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | ![]() ![]() | scaffold_1 | 23776796 | 23782088 | ![]() | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
Gn0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24814539 | 24819264 | ![]() | C_unshiu_00341 | 85182 | 89905 | Sucrose synthase | KmG-01 | 21.459 | |||||||||||
Ov0310 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48463395 | 48465325 | ![]() | C_unshiu_00026 | 334715 | 336716 | Lanatoside 15-O-acetylesterase | KmG-01 | 21.291 | JtR-01S | 61.287 | |||||||||
Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | ![]() ![]() | scaffold_1 | 25592494 | 25593617 | ![]() | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
Gn0016 | - | - | - | - | - | - | KmG-01 | 18.088 | ||||||||||||||||||||
Gn0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25880824 | 25887976 | ![]() | C_unshiu_00005 | 841899 | 847089 | Sucrose phosphate synthase | AGI-01 | 30.293 | KmG-01 | 17.862 | |||||||||
Al0407 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 26576059 | 26578193 | ![]() | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
If0008 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_1 | 26576059 | 26578193 | No | KmG-01 | 15.635 | JtR-01S | 57.666 | ||||||||||||
Lp0237 | Lp0237.k | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25987803 | 25992258 | ![]() | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
Al0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41093725 | 41097411 | ![]() | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
Wy0028 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_1 | 25001341 | 25004726 | ![]() | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
Af1255 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28061221 | 28063450 | ||||||||||||||||||
Af1520 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7360380 | 7367946 | ||||||||||||||||||
Al0215 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21918726 | 21922966 | ![]() | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
Bf0180 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Cp1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1537835 | 1540818 | ||||||||||||||||||
Fb0346 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
Ov0129 | Ov0129.k | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2717014 | 2719856 | |||||||||||||||||
Tf0166 | - | - | - | - | - | - | SI156 | ![]() ![]() | scaffold_5 | 19682579 | 19686163 | ![]() | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
Tf0442 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23158292 | 23161424 | ||||||||||||||||||
Af0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25190682 | 25192326 | ||||||||||||||||||
Af1256 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 940514 | 942972 | ||||||||||||||||||
Af1521 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9799746 | 9804461 | ||||||||||||||||||
Al0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7359982 | 7369305 | ||||||||||||||||||
Bf0182 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 17831333 | 17834889 | ![]() | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
Cp1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20024370 | 20027538 | ||||||||||||||||||
Fb0357 | O | - | - | - | - | - | SI384 | ![]() ![]() | scaffold_5 | 40550222 | 40554434 | ![]() | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
Lp0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ||||||||||||||||||
Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | ![]() ![]() | scaffold_4 | 17143350 | 17147918 | ![]() | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
Tf0443 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 5886744 | 5892919 | ||||||||||||||||||
Af0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9468245 | 9468907 | ||||||||||||||||||
Af1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25059045 | 25061910 | ||||||||||||||||||
Af1522 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1507804 | 1510299 | ||||||||||||||||||
Bf0183 | O | - | - | - | - | - | SI308 | ![]() ![]() | scaffold_9 | 5254416 | 5256826 | ![]() | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
Cp1067 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 188504 | 192741 | ||||||||||||||||||
Lp0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3323209 | 3331825 | ||||||||||||||||||
Ov0302 | Ov0301.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | ![]() ![]() | scaffold_1 | 24898769 | 24905716 | ![]() | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
Tf0444 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 10574673 | 10578797 | ||||||||||||||||||
Af0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11373565 | 11374539 | ||||||||||||||||||
Af1258 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24591409 | 24594117 | ||||||||||||||||||
Af1523 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6231492 | 6235447 | ||||||||||||||||||
Al0218.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | ||||||||||||||||||
Bf0184 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24893551 | 24898675 | ![]() | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
Cp1081 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7826603 | 7829404 | ||||||||||||||||||
Lp0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14967254 | 14971449 | ||||||||||||||||||
Ov0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25160851 | 25164999 | ||||||||||||||||||
Tf0169 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2284484 | 2302268 | ||||||||||||||||||
Tf0445 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6065092 | 6068908 | ||||||||||||||||||
Af0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8447414 | 8453714 | ![]() | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
Af1259 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15528851 | 15538252 | ||||||||||||||||||
Af1524 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9325319 | 9327565 | ||||||||||||||||||
Al0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 793820 | 798369 | ||||||||||||||||||
Bf0189 | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
Cp1084 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
Lp0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22362548 | 22366644 | ||||||||||||||||||
Ov0304 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6482366 | 6484923 | ||||||||||||||||||
Tf0170 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ||||||||||||||||||
Tf0446 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42990251 | 42995979 | ||||||||||||||||||
Af0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ||||||||||||||||||
Af1260 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38869666 | 38875561 | ||||||||||||||||||
Af1525 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Al0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3683537 | 3688814 | ||||||||||||||||||
Bf0193 | O | - | - | - | - | - | SI100,SI109 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
Cp1085 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ![]() | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
Fb0372 | - | - | - | - | - | - | SI343,SI052 | ![]() ![]() | scaffold_5 | 35123213 | 35124730 | ![]() | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
Lp0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 329518 | 331024 | ||||||||||||||||||
Tf0171 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25466629 | 25472365 | ||||||||||||||||||
Tf0447 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Af0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36883103 | 36887975 | ||||||||||||||||||
Af1261 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20321003 | 20329872 | ||||||||||||||||||
Af1526 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38852547 | 38855263 | ||||||||||||||||||
Al0221 | - | - | - | - | - | - | ||||||||||||||||||||||
Bf0195 | - | - | - | - | - | - | SI369 | ![]() ![]() | scaffold_5 | 31069237 | 31075092 | ![]() | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
Cp1086 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ||||||||||||||||||
Lp0030 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23185703 | 23187916 | ||||||||||||||||||
Tf0172 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9976621 | 9980176 | ![]() | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
Tf0448 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254049 | ||||||||||||||||||
Af0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17014582 | 17026325 | ||||||||||||||||||
Af1262 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28424576 | 28427136 | ||||||||||||||||||
Af1527 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17175041 | 17177917 | ||||||||||||||||||
Al0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30607996 | 30610863 | ||||||||||||||||||
Bf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5654376 | 5658039 | ||||||||||||||||||
Cp1093 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16696979 | 16699623 | ||||||||||||||||||
Fb0374 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6777322 | 6781162 | ||||||||||||||||||
Lp0031 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22261408 | 22266208 | ![]() | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
Ov0307 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4937047 | 4940138 | |||||||||||||||||
Tf0173 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26097343 | 26099320 | ![]() | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
Tf0449 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28254307 | 28257305 | ![]() | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
Af0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32749064 | 32749699 | ||||||||||||||||||
Af1263 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28494348 | 28496251 | ||||||||||||||||||
Af1528 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1676368 | 1677018 | ||||||||||||||||||
Al0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17438270 | 17440122 | ![]() | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
Bf0200 | OOthers | - | - | - | - | - | - | SI335 | ![]() ![]() | scaffold_2 | 29022433 | 29030724 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8603450 | 8610239 | ![]() | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
Fb0389 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 25179668 | 25188103 | ![]() | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | ![]() | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
Ov0308 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16730150 | 16735004 | ||||||||||||||||||
Tf0175 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 5054551 | 5056146 | ||||||||||||||||||
Tf0450 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Af0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50406028 | 50412944 | ||||||||||||||||||
Af1264 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18539347 | 18543298 | ||||||||||||||||||
Af1529 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21228791 | 21231253 | ||||||||||||||||||
Bf0201 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29370560 | 29376244 | ||||||||||||||||||
Cp1113 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 987368 | 992630 | ||||||||||||||||||
Fb0423 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 867235 | 871452 | ||||||||||||||||||
Lp0033 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30923398 | 30926574 | ||||||||||||||||||
Ov0309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8078609 | 8083078 | ||||||||||||||||||
Tf0176 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | RP-01 | ||||||||||||
Tf0451 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Af0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40297492 | 40299711 | ||||||||||||||||||
Af1265 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22789104 | 22792252 | ||||||||||||||||||
Af1530 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Bf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 24103753 | 24107361 | ![]() | C_unshiu_00011 | 511309 | 514460 | Protein ETHYLENE INSENSITIVE 3 | RP-09 | 27.641 | |||||||||||
Cp1114 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 870926 | 875408 | ||||||||||||||||||
Fb0478 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 14592248 | 14596429 | ![]() | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
Tf0177 | - | - | - | - | - | - | SI133 | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | ||||||||||||
Tf0452 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Af0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11357990 | 11362560 | ||||||||||||||||||
Af1266 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8400378 | 8404853 | ||||||||||||||||||
Af1531 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4984340 | 4987674 | ||||||||||||||||||
Al0226 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2571941 | 2573984 | ||||||||||||||||||
Bf0203 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42410482 | 42413511 | ||||||||||||||||||
Cp1115 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 729077 | 730936 | ||||||||||||||||||
Fb0708 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243737 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
Lp0035 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27259813 | 27263097 | ||||||||||||||||||
Tf0178 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7232959 | 7238380 | ||||||||||||||||||
Tf0454 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 16108723 | 16113463 | ![]() | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
Af0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2458793 | 2459573 | ||||||||||||||||||
Af1267 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1465301 | 1468225 | ||||||||||||||||||
Af1532 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3988366 | 3989679 | ||||||||||||||||||
Al0227 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42217935 | 42222257 | ||||||||||||||||||
Bf0204 | - | - | - | - | - | - | SI326 | ![]() ![]() | scaffold_7 | 3222483 | 3228894 | ![]() | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | RP-02.2 | 9.835 | ||||||||||
Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39858531 | 39862402 | ![]() | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
Fb0722 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16098039 | 16100795 | ||||||||||||||||||
Lp0036 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12998055 | 13001834 | ||||||||||||||||||
Ov0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1344192 | 1349935 | ![]() | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
Tf0181 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Tf0455 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9338651 | 9341271 | ![]() | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
Af0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 13416061 | 13417219 | ||||||||||||||||||
Af1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22523213 | 22529556 | ||||||||||||||||||
Af1533 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22118203 | 22120791 | ||||||||||||||||||
Al0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 26206063 | 26208427 | ![]() | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
Bf0205 | O | - | - | - | - | - | SI236 | ![]() ![]() | scaffold_7 | 3541924 | 3543863 | ![]() | C_unshiu_00301 | 55570 | 57462 | WRKY | ||||||||||||
Cp1144 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2649991 | 2655756 | ![]() | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
Lp0037 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18963487 | 18968140 | |||||||||||||||||
Tf0183 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 30873886 | 30877367 | ||||||||||||||||||
Tf0456 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44858333 | 44862278 | ||||||||||||||||||
Af0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 253879 | 254627 | ||||||||||||||||||
Af1269 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27043124 | 27045483 | ||||||||||||||||||
Af1534 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 883603 | 885249 | ||||||||||||||||||
Al0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49675354 | 49684423 | ||||||||||||||||||
Bf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22005783 | 22011411 | ||||||||||||||||||
Cp1162 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 35908181 | 35912917 | ![]() | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
Lp0038 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6686602 | 6688894 | ||||||||||||||||||
Tf0184 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45393857 | 45398298 | ![]() | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
Vs0001 | - | - | - | - | - | - | ||||||||||||||||||||||
Af0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44021779 | 44027536 | ![]() | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
Af1270 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17589895 | 17593051 | ||||||||||||||||||
Af1535 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23814115 | 23817728 | ||||||||||||||||||
Al0230 | - | - | - | - | - | - | ||||||||||||||||||||||
Bf0212 | - | - | - | - | - | - | SI332 | ![]() ![]() | scaffold_2 | 9206686 | 9211152 | ![]() | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
Cp1163 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16201971 | 16207283 | ||||||||||||||||||
Fb1121 | Fb1121.lg | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22635764 | 22640239 | |||||||||||||||||
Lp0039 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22309970 | 22314448 | ||||||||||||||||||
Tf0185 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Af0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 25074163 | 25075916 | ![]() | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
Af1271 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13323583 | 13328683 | ||||||||||||||||||
Af1536 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6113049 | 6116055 | ||||||||||||||||||
Al0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16223771 | 16226683 | ![]() | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
Bf0213 | - | - | - | - | - | - | SI097 | ![]() ![]() | scaffold_5 | 37693882 | 37699178 | ![]() | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
Cp1177 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 4116356 | 4117315 | ||||||||||||||||||
Fb1134.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 9547707 | 9559498 | ![]() | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
Ov0316 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | JtR-05 | 31.749 | |||||||||||
Tf0186 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5382490 | 5385009 | ||||||||||||||||||
Af0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 313112 | 317158 | ||||||||||||||||||
Af1272 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24796351 | 24800588 | ||||||||||||||||||
Af1537 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8417158 | 8419377 | ||||||||||||||||||
Al0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4997089 | 4999255 | ||||||||||||||||||
Bf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50793520 | 50795340 | ||||||||||||||||||
Cp1184 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 17809957 | 17817998 | ||||||||||||||||||
Fb1170 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23829862 | 23832918 | ||||||||||||||||||
Ov0317 | Ov0316.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | |||||||||||||||||
Tf0187 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Af0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40691801 | 40694522 | ||||||||||||||||||
Af1273 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12214029 | 12215007 | ||||||||||||||||||
Af1538 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33921984 | 33926087 | ||||||||||||||||||
Bf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15058920 | 15066775 | ||||||||||||||||||
Cp1196 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19626061 | 19629792 | ||||||||||||||||||
Fb1227 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3367718 | 3376062 | ![]() | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
Lp0042 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21342050 | 21345004 | ||||||||||||||||||
Ov0318 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19405285 | 19407278 | ![]() | C_unshiu_00273 | 103250 | 105183 | 40S ribosomal protein S5 | ||||||||||||
Tf0188 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15774976 | 15777653 | ||||||||||||||||||
Af1003 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15605852 | 15610028 | ![]() | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
Af1274 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3152548 | 3153983 | ||||||||||||||||||
Af1539 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10097308 | 10100347 | ||||||||||||||||||
Al0235 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ||||||||||||||||||
Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
Fb1430 | Fb1430.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1879675 | 1880523 | ![]() | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
Lp0043 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35334245 | 35336841 | |||||||||||||||||
Tf0189 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21379384 | 21385293 | ||||||||||||||||||
Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 19024295 | 19026021 | ![]() | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
Af1004 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24426760 | 24434342 | ||||||||||||||||||
Af1275 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 13035174 | 13037307 | ||||||||||||||||||
Af1540 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 477388 | 478920 | ||||||||||||||||||
Al0236 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32806565 | 32812384 | ||||||||||||||||||
Bf0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24851462 | 24854925 | ||||||||||||||||||
Cp1201 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19416844 | 19420948 | ||||||||||||||||||
Fb1505 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0044 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23618424 | 23622719 | ||||||||||||||||||
Ov0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27640074 | 27641178 | ![]() | C_unshiu_00252 | 89281 | 90198 | 21 kDa protein | RP-03 | 56.919 | |||||||||||
Tf0191 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5821401 | 5825173 | ||||||||||||||||||
Vs0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Af1005 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20715590 | 20719704 | ||||||||||||||||||
Af1276 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7080222 | 7081373 | ||||||||||||||||||
Af1541 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 10510018 | 10517939 | ||||||||||||||||||
Al0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5523075 | 5524475 | ||||||||||||||||||
Bf0221 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24195180 | 24198282 | ![]() | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
Cp1213 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11598999 | 11601307 | ||||||||||||||||||
Fb1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50637673 | 50640392 | No | AGI-05 | 103.212 | |||||||||||||||
Lp0045 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0321 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42776479 | 42784038 | ||||||||||||||||||
Tf0193 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27167271 | 27171073 | ||||||||||||||||||
Vs0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 947943 | 949892 | ||||||||||||||||||
Af1006 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24661109 | 24664797 | ||||||||||||||||||
Af1277 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23811511 | 23814763 | ||||||||||||||||||
Af1542 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10424779 | 10427904 | ||||||||||||||||||
Al0238 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8494369 | 8496454 | ||||||||||||||||||
Bf0224 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22244924 | 22252231 | ||||||||||||||||||
Cp1216 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 12112790 | 12113903 | ![]() | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
Fb1611 | - | - | - | - | - | - | SI071 | ![]() ![]() | scaffold_2 | 27030188 | 27034752 | No | ||||||||||||||||
Lp0046 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24274031 | 24276658 | ||||||||||||||||||
Tf0194 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42996886 | 43001548 | ||||||||||||||||||
Vs0009 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12814731 | 12817148 | ||||||||||||||||||
Af1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6903804 | 6908960 | ||||||||||||||||||
Af1543 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42180650 | 42183843 | ||||||||||||||||||
Al0239 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16185818 | 16187223 | ![]() | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | ||||||||||||
Bf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 3460370 | 3462174 | ||||||||||||||||||
Cp1221 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 13627656 | 13629444 | ||||||||||||||||||
Fb1678 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6000266 | 6002833 | ![]() | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
Lp0047 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0323 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5549195 | 5553148 | ||||||||||||||||||
Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 67997 | 74191 | ![]() | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
Vs0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1008 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2470085 | 2471703 | ||||||||||||||||||
Af1279 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14510787 | 14516311 | ||||||||||||||||||
Af1544 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2622969 | 2624754 | ||||||||||||||||||
Al0240 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 8033465 | 8038415 | ![]() | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23654785 | 23658857 | ![]() | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
Cp1223 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50559205 | 50563745 | ||||||||||||||||||
Fb1685 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ||||||||||||||||||
Lp0048 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46374292 | 46377587 | ||||||||||||||||||
Tf0196 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7796591 | 7799786 | ![]() | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
Vs0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1009 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35818327 | 35822366 | ||||||||||||||||||
Af1281 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20366637 | 20367616 | ||||||||||||||||||
Af1545 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2153718 | 2155194 | ||||||||||||||||||
Al0241 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17857849 | 17860063 | ||||||||||||||||||
Bf0229 | - | - | - | - | - | - | SI253 | ![]() ![]() | scaffold_9 | 17242218 | 17245901 | ![]() | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
Cp1224 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ||||||||||||||||||
Fb1751 | - | - | - | - | - | - | SI264 | ![]() ![]() | scaffold_7 | 7977527 | 7984425 | ![]() | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
Lp0049 | Lp0049.k | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50736750 | 50739959 | |||||||||||||||||
Ov0325 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35180594 | 35182774 | ![]() | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
Tf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14804828 | 14808139 | ||||||||||||||||||
Vs0012 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | |||||||||||||||||||||
Af1010 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31656510 | 31666206 | ||||||||||||||||||
Af1282 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1546 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 12406078 | 12408794 | ||||||||||||||||||
Al0242 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3437577 | 3441367 | ||||||||||||||||||
Bf0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21861774 | 21865635 | ![]() | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
Cp1225 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 17208075 | 17211871 | ||||||||||||||||||
Fb1784 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 445469 | 446936 | ![]() | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
Lp0101 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15991108 | 15996585 | ||||||||||||||||||
Ov0326 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21522433 | 21525218 | ||||||||||||||||||
Tf0198 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | ||||||||||||
Vs0013 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1011 | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25306829 | 25315243 | ![]() | C_unshiu_00009 | 289462 | 299397 | Hypothetical protein | RP-04 | 60.491 | |||||||||||
Af1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29757723 | 29762309 | ||||||||||||||||||
Af1547 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3864764 | 3867933 | ||||||||||||||||||
Al0243 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | ![]() ![]() | scaffold_3 | 6502231 | 6504139 | ![]() | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
Cp1252 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 30617746 | 30629437 | ||||||||||||||||||
Fb1916 | - | - | - | - | - | - | SI336 | ![]() ![]() | scaffold_2 | 12043969 | 12046230 | ![]() | C_unshiu_00026 | 110679 | 112686 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 | RP-06.1 | 24.027 | ||||||||||
Tf0199 | - | - | - | - | - | - | SI023,SI157 | ![]() ![]() | scaffold_5 | 30994812 | 30999834 | ![]() | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
Af1012 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16270394 | 16272027 | ||||||||||||||||||
Af1285 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 12807597 | 12808725 | ||||||||||||||||||
Af1548 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25114213 | 25116604 | ||||||||||||||||||
Al0244 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9849133 | 9852098 | ||||||||||||||||||
Bf0401 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 37906090 | 37910975 | ||||||||||||||||||
Cp1254 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Lp0103 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16393309 | 16395378 | ![]() | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
Ov0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 9847502 | 9854667 | ||||||||||||||||||
Tf0200 | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21095569 | 21102194 | ||||||||||||||||||
Af1013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48621909 | 48624876 | ||||||||||||||||||
Af1286 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1549 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2184513 | 2186967 | ||||||||||||||||||
Al0245 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25185200 | 25188839 | ||||||||||||||||||
Bf0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9137249 | 9144663 | ![]() | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
Cp1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5582927 | 5587253 | ||||||||||||||||||
Fb2156 | Fb2156.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ![]() | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
Lp0104 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27579627 | 27581411 | ||||||||||||||||||
Tf0201 | O | - | - | - | - | - | SI195 | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
Af1014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43594638 | 43605172 | ||||||||||||||||||
Af1287 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39601128 | 39604586 | ||||||||||||||||||
Af1551 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6494973 | 6502196 | ||||||||||||||||||
Al0246 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44215333 | 44220917 | ||||||||||||||||||
Bf0403 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7983788 | 7991526 | ![]() | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | ![]() ![]() | scaffold_7 | 815904 | 817239 | ![]() | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
Tf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Vs0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6647158 | 6649599 | ||||||||||||||||||
Af1016 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2394471 | 2397293 | ||||||||||||||||||
Af1288 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35803512 | 35805985 | ||||||||||||||||||
Af1552 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30527060 | 30531535 | ||||||||||||||||||
Bf0404 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7327436 | 7329167 | ![]() | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
Gmom01 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33273053 | 33276013 | ||||||||||||||||||
Lp0106 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22868978 | 22880751 | ||||||||||||||||||
Ov0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18406856 | 18412391 | ||||||||||||||||||
Tf0203 | - | - | - | - | - | - | SI121 | ![]() ![]() | scaffold_2 | 10459593 | 10472483 | ![]() | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
Vs0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4612887 | 4617115 | ||||||||||||||||||
Af1017 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22671554 | 22672639 | No | AGI-03 | 46.274 | |||||||||||||||
Af1289 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 4289876 | 4293681 | ||||||||||||||||||
Af1553 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45812589 | 45815067 | ||||||||||||||||||
Al0248 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19779795 | 19784134 | ||||||||||||||||||
Bf0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2994525 | 3001770 | ||||||||||||||||||
Cp1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12263755 | 12266130 | ||||||||||||||||||
Gmom02 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4367068 | 4371625 | ||||||||||||||||||
Lp0107 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21916592 | 21922770 | ||||||||||||||||||
Ov0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5159995 | 5165972 | ||||||||||||||||||
Tf0204 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23589702 | 23593390 | ||||||||||||||||||
Af1019 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 192512 | 196670 | ||||||||||||||||||
Af1290 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24413157 | 24415621 | ||||||||||||||||||
Af1554 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23753759 | 23756754 | ![]() | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
Al0249 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30490331 | 30496586 | ||||||||||||||||||
Bf0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15773091 | 15776242 | ||||||||||||||||||
Cp1279 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12900777 | 12903692 | ![]() | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
Gmom03 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1864604 | 1871328 | ![]() | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
Tf0205 | OOthers | O | - | - | - | - | - | SI274 | ![]() ![]() | scaffold_9 | 16383851 | 16393557 | ![]() | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
Vt0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 20868750 | 20872170 | ||||||||||||||||||
Af1021 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40664635 | 40665640 | ||||||||||||||||||
Af1291 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4779400 | 4780310 | ||||||||||||||||||
Af1555 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24502070 | 24504031 | ||||||||||||||||||
Al0250 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24770754 | 24773948 | ||||||||||||||||||
Bf0407 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10729034 | 10731466 | ||||||||||||||||||
Cp1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34891100 | 34894176 | ||||||||||||||||||
Gmom04 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
Lp0109 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 17561127 | 17562695 | |||||||||||||||||
Tf0206 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23161294 | 23166939 | ||||||||||||||||||
Vt0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 8153660 | 8174407 | ![]() | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Af1022 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8486491 | 8488997 | ||||||||||||||||||
Af1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6677314 | 6680214 | ||||||||||||||||||
Af1556 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11107041 | 11109191 | ![]() | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
Al0251 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6695171 | 6697430 | ||||||||||||||||||
Bf0408 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4843157 | 4848614 | ||||||||||||||||||
Cp1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2246732 | 2249558 | ||||||||||||||||||
Gmom05 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 33722934 | 33727855 | ||||||||||||||||||
Lp0110 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24271753 | 24272644 | ||||||||||||||||||
Ov0409 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4736047 | 4740432 | ||||||||||||||||||
Tf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9008920 | 9021876 | ||||||||||||||||||
Vt0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9805899 | 9809222 | ||||||||||||||||||
Af1023 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2719654 | 2725331 | ||||||||||||||||||
Af1293 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 16597796 | 16602257 | ||||||||||||||||||
Af1558 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29608462 | 29612474 | ||||||||||||||||||
Al0252 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24689989 | 24692884 | ||||||||||||||||||
Bf0409 | - | - | - | - | - | - | ![]() | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
Cp1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 7407834 | 7414015 | ||||||||||||||||||
Gmom06 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2067586 | 2073007 | ||||||||||||||||||
Lp0111 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 36096009 | 36099799 | ||||||||||||||||||
Ov0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41005054 | 41009065 | ||||||||||||||||||
Tf0208 | - | - | - | - | - | - | SI181 | ![]() ![]() | scaffold_6 | 23593516 | 23595492 | ![]() | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
Vt0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36449346 | 36452178 | ||||||||||||||||||
Af1024 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35841859 | 35844177 | ||||||||||||||||||
Af1294 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ||||||||||||||||||
Af1559 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2211862 | 2215512 | ||||||||||||||||||
Al0256 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19538138 | 19541255 | ||||||||||||||||||
Bf0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32917826 | 32924241 | ||||||||||||||||||
Cp1308 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_6 | 6329421 | 6335005 | ![]() | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
Gmom07 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7248627 | 7253007 | ||||||||||||||||||
Lp0112 | AAvailable marker | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3749809 | 3751724 | ![]() | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
Ov0411 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23410636 | 23414246 | ||||||||||||||||||
Tf0209 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35642412 | 35646764 | ||||||||||||||||||
Vt0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24914885 | 24923422 | ||||||||||||||||||
Af1025 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48337105 | 48339028 | ||||||||||||||||||
Af1295 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3468083 | 3477274 | ||||||||||||||||||
Af1560 | - | - | - | - | - | - | ||||||||||||||||||||||
Al0257 | Al0257.k | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22407412 | 22409529 | |||||||||||||||||
Bf0411 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21869065 | 21874083 | ![]() | C_unshiu_00500 | 128482 | 133656 | Sulfotransferase | ||||||||||||
Cp1323 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17992563 | 17993671 | ||||||||||||||||||
Gmom08 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0113 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24480591 | 24484723 | ||||||||||||||||||
Tf0210 | - | - | - | - | - | - | SI183 | ![]() ![]() | scaffold_9 | 11993282 | 11999324 | ![]() | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
Vt0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49821906 | 49825730 | ||||||||||||||||||
Af1026 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24690261 | 24692734 | ![]() | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
Af1296 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19133592 | 19137895 | ||||||||||||||||||
Af1561 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2420324 | 2423040 | ||||||||||||||||||
Al0301 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45906879 | 45907641 | ||||||||||||||||||
Bf0412 | - | - | - | - | - | - | No | AGI-08 | 29.534 | |||||||||||||||||||
Cp1330 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 14898168 | 14903449 | ||||||||||||||||||
Gmom09 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0114 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28623624 | 28626008 | ||||||||||||||||||
Tf0211 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28607325 | 28610917 | ||||||||||||||||||
Vt0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49256390 | 49259083 | ||||||||||||||||||
Af1027 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2946301 | 2950297 | ||||||||||||||||||
Af1297 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23311867 | 23313814 | ||||||||||||||||||
Af1562 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 548048 | 549062 | ||||||||||||||||||
Bf0413 | - | - | - | - | - | - | ![]() | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
Gmom11 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 680835 | 684433 | ||||||||||||||||||
Lp0115 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ||||||||||||||||||
Ov0414 | Ov0413.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | |||||||||||||||||
Tf0212 | - | - | - | - | - | - | SI196 | ![]() ![]() | scaffold_4 | 19816800 | 19825304 | ![]() | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
Af1028 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42113621 | 42120391 | ||||||||||||||||||
Af1298 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2037273 | 2040825 | ||||||||||||||||||
Af1562b | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1530713 | 1532413 | ||||||||||||||||||
Al0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24431064 | 24433341 | ||||||||||||||||||
Bf0414 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7719550 | 7723396 | ||||||||||||||||||
Cp1336 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ||||||||||||||||||
Gmom12 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25604509 | 25605857 | ||||||||||||||||||
Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19397294 | 19398741 | ![]() | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
Ov0415 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2339077 | 2341173 | ||||||||||||||||||
Tf0213 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18839546 | 18848948 | ![]() | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
Vt0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48560245 | 48562027 | ||||||||||||||||||
Af1029 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2110308 | 2113166 | ||||||||||||||||||
Af1299 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27638163 | 27639131 | ||||||||||||||||||
Af1564 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26206635 | 26210648 | ||||||||||||||||||
Bf0415 | - | - | - | - | - | - | ![]() | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
Cp1340 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 125954 | 131376 | ||||||||||||||||||
Gmom13 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 13223034 | 13225922 | ![]() | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
Lp0117 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 28815314 | 28816638 | ||||||||||||||||||
Ov0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24807948 | 24823388 | ||||||||||||||||||
Tf0214 | - | - | - | - | - | - | SI020 | ![]() ![]() | scaffold_3 | 50133837 | 50139049 | ![]() | C_unshiu_00014 | 458017 | 462942 | Transcription factor UNE10 | ||||||||||||
Vt0011 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 12984411 | 12986574 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
Af1030 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3930788 | 3932748 | ||||||||||||||||||
Af1300 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8539647 | 8542949 | ||||||||||||||||||
Af1565 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21875022 | 21879839 | ||||||||||||||||||
Al0305 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47200055 | 47201893 | ||||||||||||||||||
Bf0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ||||||||||||||||||
Cp1352 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8198787 | 8204052 | ||||||||||||||||||
Gmom15 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 851900 | 857695 | ||||||||||||||||||
Tf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 43036925 | 43044008 | ||||||||||||||||||
Vt0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1806179 | 1809814 | ||||||||||||||||||
Af1031 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 718488 | 722516 | ![]() | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
Af1301 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 866845 | 870030 | ||||||||||||||||||
Af1566 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15346135 | 15348332 | ||||||||||||||||||
Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | ![]() | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
Bf0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 693215 | 695933 | ||||||||||||||||||
Cp1361 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 21714716 | 21717652 | ![]() | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
Gmom16 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | ![]() ![]() | scaffold_8 | 24315720 | 24317671 | ![]() | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
Ov0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11863906 | 11865549 | ||||||||||||||||||
Tf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29413143 | 29414562 | ||||||||||||||||||
Vt0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 13123280 | 13126173 | ||||||||||||||||||
Af1032 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8377489 | 8379348 | ||||||||||||||||||
Af1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14457766 | 14462726 | ||||||||||||||||||
Af1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22759341 | 22763218 | ||||||||||||||||||
Al0307 | Al0307.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | |||||||||||||||||
Bf0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38489257 | 38490776 | ||||||||||||||||||
Cp1362 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ||||||||||||||||||
Gmom17 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ||||||||||||||||||
Lp0120 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Ov0419 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 16709179 | 16712039 | ![]() | C_unshiu_00008 | 178086 | 180944 | Pyruvate decarboxylase | RP-04 | 11.143 | ||||||||||
Tf0217 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34910794 | 34916593 | ||||||||||||||||||
Vt0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21102979 | 21105476 | ||||||||||||||||||
Af1033 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10456899 | 10459385 | ||||||||||||||||||
Af1303 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22810929 | 22812161 | ||||||||||||||||||
Af1568 | - | - | - | - | - | - | ![]() | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
Al0308 | - | - | - | - | - | - | SI045 | ![]() ![]() | scaffold_8 | 24521116 | 24524868 | ![]() | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
Bf0419 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 8696694 | 8697639 | ||||||||||||||||||
Cp1366 | AAvailable marker | - | - | - | - | - | O | |||||||||||||||||||||
Gmom19 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21450811 | 21454133 | ![]() | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
Lp0121 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 34829300 | 34831997 | ||||||||||||||||||
Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | ![]() | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
Tf0218 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31489811 | 31497594 | ||||||||||||||||||
Af1034 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Af1304 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2210485 | 2215202 | ||||||||||||||||||
Af1569 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23192472 | 23198396 | ||||||||||||||||||
Bf1176 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24312108 | 24313141 | ||||||||||||||||||
Cp1369 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24737050 | 24741836 | ||||||||||||||||||
Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
Ov0421 | Ov0420.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | |||||||||||||||||
Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
Vt0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17974828 | 17979364 | ||||||||||||||||||
Af1035 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23469184 | 23472872 | ||||||||||||||||||
Af1305 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19760077 | 19761961 | ||||||||||||||||||
Af1570 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4601588 | 4603705 | ||||||||||||||||||
Al0310 | Al0309.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | |||||||||||||||||
Bf1181 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1405 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Lp0123 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32889614 | 32896199 | ||||||||||||||||||
Ov0422 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_2 | 11071587 | 11074479 | ![]() | C_unshiu_00184 | 295953 | 298736 | 14-3-3-like protein GF14 mu | RP-06.1 | 28.576 | ||||||||||
Tf0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23657256 | 23657810 | ||||||||||||||||||
Vt0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23705523 | 23709604 | ||||||||||||||||||
Af1036 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7016831 | 7019863 | ![]() | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
Af1306 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28968668 | 28973736 | ||||||||||||||||||
Af1571 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24533064 | 24536628 | ||||||||||||||||||
Al0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5456336 | 5459361 | ||||||||||||||||||
Bf1182.2 | - | - | - | - | - | - | No | AGI-03 | 56.391 | |||||||||||||||||||
Cp1407 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21243085 | 21244983 | ||||||||||||||||||
Gmom24 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
Lp0124 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10087523 | 10092758 | ||||||||||||||||||
Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42954362 | 42955051 | ![]() | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
Tf0221 | - | - | - | - | - | - | SI057,SI225 | ![]() ![]() | scaffold_7 | 490750 | 492882 | ![]() | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
Vt0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22471208 | 22474774 | ||||||||||||||||||
Af1037 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1969590 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
Af1307 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5310513 | 5314498 | ||||||||||||||||||
Af1572 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22084232 | 22091205 | ||||||||||||||||||
Al0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4144939 | 4148359 | ||||||||||||||||||
Bf1185 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40993520 | 40993992 | No | AGI-09 | ||||||||||||||||
Cp1412 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47217428 | 47221472 | ||||||||||||||||||
Gmom26 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 713868 | 716708 | ![]() | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
Lp0125 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 11150758 | 11155385 | ||||||||||||||||||
Ov0424 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23480483 | 23484398 | ||||||||||||||||||
Tf0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28782169 | 28786731 | ||||||||||||||||||
Vt0019 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41913536 | 41914321 | ||||||||||||||||||
Af1038 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1308 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13625504 | 13630800 | ||||||||||||||||||
Af1573 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11163359 | 11165487 | ||||||||||||||||||
Bf1186 | - | - | - | - | - | - | SI245 | ![]() ![]() | scaffold_6 | 21912438 | 21917736 | ![]() | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
Cp1427 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45576863 | 45579197 | ![]() | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
Gmom27 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16046322 | 16048971 | ||||||||||||||||||
Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | ![]() | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
Tf0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23774309 | 23780334 | ||||||||||||||||||
Vt0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1970129 | 1972842 | ||||||||||||||||||
Af1039 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14381144 | 14384897 | ||||||||||||||||||
Af1309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50647753 | 50652010 | ||||||||||||||||||
Af1574 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14444651 | 14447199 | ||||||||||||||||||
Al0314 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2574769 | 2577568 | ||||||||||||||||||
Bf1192 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 10678653 | 10684627 | ![]() | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
Cp1428 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49195569 | 49198341 | ||||||||||||||||||
Gmom28 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12596113 | 12597155 | ||||||||||||||||||
Lp0127 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21374019 | 21379609 | ||||||||||||||||||
Ov0426 | Ov0425.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | |||||||||||||||||
Tf0224 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7785328 | 7796808 | ![]() | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
Vt0021 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2015894 | 2023323 | ||||||||||||||||||
Af1040 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ||||||||||||||||||
Af1310 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 14481402 | 14484929 | ||||||||||||||||||
Af1575 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17524835 | 17526697 | ![]() | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
Al0315 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 4905341 | 4909930 | ||||||||||||||||||
Bf1198 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1436 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48720837 | 48722931 | ||||||||||||||||||
Gmom29 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 12677414 | 12680761 | ![]() | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
Lp0128 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2848884 | 2853210 | ||||||||||||||||||
Tf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 36211961 | 36216858 | ||||||||||||||||||
Vt0022 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24201196 | 24203794 | ||||||||||||||||||
Af1041 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40300306 | 40304768 | ||||||||||||||||||
Af1311 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2025698 | 2028188 | ||||||||||||||||||
Af1576 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41566338 | 41572373 | No | AGI-05 | 47.986 | |||||||||||||||
Al0316 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40918148 | 40922656 | ||||||||||||||||||
Bf1204 | - | - | - | - | - | - | SI364 | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
Cp1439 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47139756 | 47144124 | ||||||||||||||||||
Gmom31 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27783419 | 27789937 | ||||||||||||||||||
Lp0129 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ||||||||||||||||||
Ov0428 | Ov0427.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | |||||||||||||||||
Tf0226 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_1 | 526813 | 529150 | ![]() | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
Vt0023 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8712236 | 8714558 | ||||||||||||||||||
Af1042 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28786444 | 28788097 | No | AGI-06 | 55.700 | |||||||||||||||
Af1312 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29022433 | 29030537 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
Af1577 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ||||||||||||||||||
Bf1207 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22912695 | 22913798 | ![]() | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
Cp1441 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37735873 | 37744747 | ||||||||||||||||||
Gn0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12840408 | 12842940 | ||||||||||||||||||
Lp0130 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 11512415 | 11514434 | ||||||||||||||||||
Ov0429 | Ov0429.k | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 290799 | 294122 | |||||||||||||||||
Tf0227 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 21666061 | 21671693 | ![]() | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
Vt0024 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21593473 | 21597037 | ||||||||||||||||||
Af1043 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20049936 | 20052008 | ![]() | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
Af1313 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31222299 | 31225439 | ||||||||||||||||||
Af1578 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48016069 | 48017656 | ||||||||||||||||||
Al0318 | Al0318.2 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ||||||||||||||||
Bf1208 | - | - | - | - | - | - | SI108 | No | ||||||||||||||||||||
Cp1474 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37517043 | 37521275 | ||||||||||||||||||
Gn0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ![]() | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
Lp0131 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 20390517 | 20391131 | ||||||||||||||||||
Ov0501 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48089473 | 48091232 | ![]() | C_unshiu_00026 | 712172 | 713868 | Nepenthesin II | RP-05 | 61.026 | |||||||||||
Tf0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6025802 | 6031497 | ||||||||||||||||||
Vt0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6764664 | 6770188 | ||||||||||||||||||
Af1044 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16378858 | 16383103 | ||||||||||||||||||
Af1314 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38283419 | 38284959 | ||||||||||||||||||
Af1579 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 75348 | 78181 | ||||||||||||||||||
Bf1243 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24657015 | 24660141 | ![]() | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
Cp1477 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36095844 | 36099890 | ![]() | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
Gn0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Lp0132 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5469050 | 5475142 | ||||||||||||||||||
Tf0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24248767 | 24251495 | ||||||||||||||||||
Vt0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44691395 | 44694360 | ||||||||||||||||||
Af1045 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 9197774 | 9204364 | ||||||||||||||||||
Af1315 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 203839 | 207450 | ||||||||||||||||||
Af1580 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35013848 | 35015439 | ![]() | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
Al0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | ![]() | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
Bf1253 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1483 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ![]() | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
Ov0503 | AtAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | ![]() | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | NAT-05 | 19.042 | ||||||||||
Tf0230 | - | - | - | - | - | - | SI140 | ![]() ![]() | scaffold_1 | 23463843 | 23470911 | ![]() | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
Vt0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 303399 | 306794 | ||||||||||||||||||
Af1046 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ||||||||||||||||||
Af1316 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 685220 | 687072 | ||||||||||||||||||
Af1581 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 27092414 | 27093612 | ||||||||||||||||||
Al0320.2 | Al0320.em | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_3 | 541575 | 543121 | ![]() | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||
Cp0001 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47576415 | 47578036 | ||||||||||||||||||
Cp1487 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | ||||||||||||||||||
Lp0134 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24480591 | 24484723 | ||||||||||||||||||
Ov0504 | Ov0503.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | |||||||||||||||||
Tf0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6760311 | 6763833 | ||||||||||||||||||
Af1047 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 16357227 | 16363309 | ![]() | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
Af1317 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 35932198 | 35935023 | ||||||||||||||||||
Af1583 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29549722 | 29551403 | ||||||||||||||||||
Al0321.2 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | |||||||||||||||||
Cp0002 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47583337 | 47586652 | ||||||||||||||||||
Cp1488 | Cp1488.1 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | |||||||||||||||||
Gn0005.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ||||||||||||||||||
Lp0135 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39412819 | 39414334 | ![]() | C_unshiu_00457 | 27521 | 28982 | Xylem serinease 1-like protein | JtR-05 | 41.854 | |||||||||||
Tf0232 | - | - | - | - | - | - | SI258,SI261 | ![]() ![]() | scaffold_5 | 37066208 | 37070717 | ![]() | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
Vt0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2451345 | 2454325 | ![]() | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
Af1048 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 16357227 | 16363309 | ||||||||||||||||||
Af1318 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 12549543 | 12550712 | ||||||||||||||||||
Af1584 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 17424218 | 17426071 | ||||||||||||||||||
Al0322 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34801352 | 34804440 | ||||||||||||||||||
Cp0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 11826472 | 11830875 | ||||||||||||||||||
Cp1488.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ||||||||||||||||||
Gn0006 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0136 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10500879 | 10504450 | ||||||||||||||||||
Ov0506 | Ov0505.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16626338 | 16629094 | |||||||||||||||||
Tf0233 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6772264 | 6775904 | ||||||||||||||||||
Vt0030 | Vt0030.k | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11271705 | 11277014 | ![]() | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
Af1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42879563 | 42882316 | ||||||||||||||||||
Af1320 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 34602479 | 34604518 | ||||||||||||||||||
Af1585 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3462353 | 3463444 | ||||||||||||||||||
Al0323 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18188139 | 18189060 | |||||||||||||||||
Cp0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48753307 | 48755805 | ||||||||||||||||||
Cp1489 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6577360 | 6582553 | ||||||||||||||||||
Gn0007.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 17778571 | 17785482 | ||||||||||||||||||
Lp0137 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ||||||||||||||||||
Ov0507 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_4 | 642157 | 644823 | |||||||||||||||||
Tf0234 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23476661 | 23480861 | ||||||||||||||||||
Vt0031 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1051 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 35093132 | 35106001 | ||||||||||||||||||
Af1321 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16371168 | 16375666 | ![]() | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
Af1586 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23119502 | 23122347 | ![]() | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20424287 | 20425903 | ![]() | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
Cp0006 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14610897 | 14614381 | ||||||||||||||||||
Cp1490 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6369398 | 6372018 | ||||||||||||||||||
Gn0008 | OOthers | - | - | - | - | - | - | SI176 | ![]() ![]() | scaffold_9 | 17789634 | 17793258 | ![]() | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
Lp0138 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2599957 | 2603377 | ||||||||||||||||||
Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | ![]() ![]() | scaffold_4 | 17057658 | 17074755 | ![]() | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
Vt0032 | O | - | - | - | - | - | SI024 | ![]() ![]() | scaffold_7 | 17901487 | 17905433 | ![]() | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
Af1052 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 12808154 | 12820311 | ![]() | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Af1322 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41715562 | 41717774 | ||||||||||||||||||
Af1587 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39483387 | 39486219 | ||||||||||||||||||
Al0325 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp0007 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46924692 | 46927004 | |||||||||||||||||
Cp1500 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7080249 | 7086989 | ![]() | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
Lp0139 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1470163 | 1473304 | ||||||||||||||||||
Ov0509 | ULess informative for main cultivars | O | - | - | - | - | - | No | AGI-09 | 102.280 | RP-09 | 21.445 | ||||||||||||||||
Tf0236 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38595158 | 38602400 | ||||||||||||||||||
Vt0033 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23695881 | 23697100 | ||||||||||||||||||
Af1053 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29206818 | 29208977 | ||||||||||||||||||
Af1324 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38189669 | 38190638 | ||||||||||||||||||
Af1588 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6750503 | 6754741 | ||||||||||||||||||
Cp0009 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46143241 | 46147293 | ||||||||||||||||||
Cp1501 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24336809 | 24337802 | ||||||||||||||||||
Gn0010 | - | - | - | - | - | - | ||||||||||||||||||||||
Tf0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29392885 | 29395387 | ||||||||||||||||||
Vt0034 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39630111 | 39635609 | ||||||||||||||||||
Af1054 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2033331 | 2036879 | ||||||||||||||||||
Af1325 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6287460 | 6289468 | ||||||||||||||||||
Af1589 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30995129 | 30999295 | ![]() | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
Al0327 | Al0326.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | |||||||||||||||||
Cp0010 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45604806 | 45609651 | ||||||||||||||||||
Cp1523 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 1356758 | 1359310 | ![]() | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
Lp0141 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22386727 | 22388706 | ||||||||||||||||||
Ov0511 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6101482 | 6103243 | ||||||||||||||||||
Tf0238 | - | - | - | - | - | - | SI114 | ![]() ![]() | scaffold_7 | 551893 | 553909 | ![]() | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
Vt0035 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8510712 | 8514409 | ||||||||||||||||||
Af1055 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42297979 | 42300281 | ||||||||||||||||||
Af1326 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43258339 | 43260615 | ||||||||||||||||||
Af1590 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9348292 | 9351074 | ||||||||||||||||||
Al0328 | - | - | - | - | - | - | ![]() |