| Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
| Bf0104 | O | - | - | - | - | - |  C_unshiu_01101:mRNA_8.1 | C_unshiu_01101 | 77694 | 80951 | 12-oxophytodienoate reductase 2 | AGI-05 | 41.306 | NAT-05 | ||||||||||||||
| Ov0422 | AAvailable marker | - | - | - | - | - | O |   Ciclev10016314m | scaffold_2 | 11071587 | 11074479 | C_unshiu_00184:mRNA_33.1 | C_unshiu_00184 | 295953 | 298736 | 14-3-3-like protein GF14 mu | RP-06.1 | 28.576 | ||||||||||
| Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | Ciclev10009756m | scaffold_1 | 25592494 | 25593617 | C_unshiu_00066:mRNA_75.1 | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
| Ov0320 | - | - | - | - | - | - | Ciclev10005968m | scaffold_9 | 27640074 | 27641178 | C_unshiu_00252:mRNA_13.1 | C_unshiu_00252 | 89281 | 90198 | 21 kDa protein | RP-03 | 56.919 | |||||||||||
| Al0008 | - | - | - | - | - | - | Ciclev10001908m | scaffold_5 | 40317721 | 40321609 | C_unshiu_00054:mRNA_1.1 | C_unshiu_00054 | 5765 | 8674 | 26S proteasome non-ATPase regulatory subunit 14 | SA-09 | 50.699 | |||||||||||
| Af1031 | O | - | - | - | - | - | Ciclev10025711m | scaffold_7 | 718488 | 722516 | C_unshiu_00353:mRNA_22.1 | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
| Bf0182 | O | - | - | - | - | - | Ciclev10009454m | scaffold_1 | 17831333 | 17834889 | C_unshiu_00429:mRNA_12.1 | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
| Cp1500 | - | - | - | - | - | - | Ciclev10004776m | scaffold_9 | 7080249 | 7086989 | C_unshiu_00161:mRNA_19.1 | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
| Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | Ciclev10032902m | scaffold_4 | 19467669 | 19468803 | C_unshiu_00099:mRNA_4.1 | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
| Cp1598 | AAvailable marker | - | - | - | - | O | O | Ciclev10021001m | scaffold_3 | 3802387 | 3805494 | C_unshiu_00849:mRNA_13.2 | C_unshiu_00849 | 72935 | 75824 | 31 kDa ribonucleoprotein | AGI-05 | 12.715 | ||||||||||
| Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | Ciclev10014804m | scaffold_2 | 14143537 | 14146003 | C_unshiu_00466:mRNA_1.1 | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
| Af1513 | - | - | - | - | - | - | Ciclev10006024m | scaffold_9 | 29523786 | 29526379 | C_unshiu_00056:mRNA_24.1 | C_unshiu_00056 | 181282 | 183151 | 40S ribosomal protein S10 | AGI-03 | 63.545 | |||||||||||
| Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | Ciclev10012499m | scaffold_6 | 16909492 | 16912088 | C_unshiu_00008:mRNA_65.1 | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
| Ov0318 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10012779m | scaffold_6 | 19405285 | 19407278 | C_unshiu_00273:mRNA_20.1 | C_unshiu_00273 | 103250 | 105183 | 40S ribosomal protein S5 | ||||||||||||
| Lp0108 | AAvailable marker | - | - | - | - | - | O | Ciclev10026340m | scaffold_7 | 5554619 | 5556993 | C_unshiu_00761:mRNA_5.1 | C_unshiu_00761 | 18704 | 21072 | 40S ribosomal protein S6 | KmG-02 | 41.508 | JtR-02 | 18.351 | ||||||||
| Ov0005 | AAvailable marker | - | - | - | - | O | O | SI243,SI331 | Ciclev10019557m | scaffold_3 | 41636616 | 41641083 | C_unshiu_02126:mRNA_2.1 | C_unshiu_02126 | 9391 | 13319 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | AGI-05 | 47.986 | |||||||||
| Ov0122 | OOthers | - | - | - | - | - | - | Ciclev10019557m | scaffold_3 | 41636616 | 41641083 | C_unshiu_01535:mRNA_2.2 | C_unshiu_01535 | 14018 | 19080 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | KmG-05S | 65.738 | JtR-05 | 41.268 | ||||||||
| Cp1361 | AAvailable marker | - | - | - | - | O | O | Ciclev10013042m | scaffold_6 | 21714716 | 21717652 | C_unshiu_01167:mRNA_14.1 | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
| Em0001 | - | - | - | - | - | - | Ciclev10016968m | scaffold_2 | 31927342 | 31929229 | C_unshiu_00027:mRNA_54.1 | C_unshiu_00027 | 345067 | 346727 | 50S ribosomal protein L14, chloroplastic | AGI-06 | 35.643 | |||||||||||
| Cp2154 | - | - | - | - | - | - | SI164 | Ciclev10009584m | scaffold_1 | 20462860 | 20465557 | C_unshiu_00670:mRNA_8.1 | C_unshiu_00670 | 44502 | 47121 | 50S ribosomal protein L24, chloroplastic | ||||||||||||
| Lp0041 | AAvailable marker | - | - | - | - | - | O | Ciclev10006136m | scaffold_9 | 6354796 | 6356630 | C_unshiu_00146:mRNA_22.1 | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | KmG-032 | 17.549 | JtR-031 | 14.643 | RP-03 | 29.608 | ||||||
| Af1456 | - | - | - | - | - | - | Ciclev10006136m | scaffold_9 | 6354796 | 6356630 | C_unshiu_00146:mRNA_22.1 | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | AGI-03 | 46.298 | |||||||||||
| Lp0019 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10026623m | scaffold_7 | 20922631 | 20924709 | C_unshiu_00622:mRNA_2.1 | C_unshiu_00622 | 28630 | 30583 | 50S ribosomal protein L29, chloroplastic | KmG-02 | 4.377 | JtR-02 | -6.938 | ||||||||
| Cp0635 | AAvailable marker | O | - | O | - | O | O | C_unshiu_00337:mRNA_4.1 | C_unshiu_00337 | 11596 | 15307 | 50S ribosomal protein L4 | AGI-06 | 17.029 | ||||||||||||||
| Cp2210 | AAvailable marker | - | - | - | - | - | O | Ciclev10007886m | scaffold_1 | 8125279 | 8130885 | C_unshiu_00744:mRNA_3.1 | C_unshiu_00744 | 19836 | 25320 | 6-phosphofructokinase isoform 1 | ||||||||||||
| Af1332 | - | - | - | - | - | - | Ciclev10013051m | scaffold_6 | 20834427 | 20836151 | C_unshiu_00052:mRNA_57.1 | C_unshiu_00052 | 455959 | 457684 | 60S acidic ribosomal protein | AGI-04 | ||||||||||||
| Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | Ciclev10032770m | scaffold_4 | 2422861 | 2424838 | C_unshiu_00979:mRNA_13.2 | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
| Ov0027 | Ov0027.em | - | - | - | - | - | - | Ciclev10009797m | scaffold_1 | 8417158 | 8419377 | C_unshiu_00584:mRNA_9.1 | C_unshiu_00584 | 74089 | 76266 | 60S ribosomal protein L28 | AGI-03 | 51.749 | ||||||||||
| Mf0088 | OOthers | O | - | - | - | - | - | Ciclev10001453m | scaffold_5 | 5104067 | 5106917 | C_unshiu_00108:mRNA_11.1 | C_unshiu_00108 | 101283 | 105493 | 60S ribosomal protein L3 | RP-09 | |||||||||||
| Ov0503 | AtAvailable marker | O | - | - | - | - | O | Ciclev10020582m | scaffold_3 | 28382218 | 28386683 | C_unshiu_00585:mRNA_5.1 | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | NAT-05 | 19.042 | ||||||||||
| Gn0056 | - | - | - | - | - | - | Ciclev10020582m | scaffold_3 | 28382218 | 28386683 | C_unshiu_00585:mRNA_5.1 | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | AGI-05 | 39.424 | |||||||||||
| Al0407 | AAvailable marker | O | - | - | - | O | O | Ciclev10009315m | scaffold_1 | 26576059 | 26578193 | C_unshiu_00131:mRNA_17.1 | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
| If0010 | AAvailable marker | O | - | - | - | O | - | Ciclev10026308m | scaffold_7 | 1264965 | 1266960 | C_unshiu_00218:mRNA_11.1 | C_unshiu_00218 | 63403 | 65018 | 60S ribosomal protein L8 | AGI-02 | 73.759 | KmG-02 | 76.687 | JtR-02 | 10.849 | NAT-02S | 71.041 | ||||
| Fb1430 | Fb1430.lg | O | - | - | - | - | - | Ciclev10005994m | scaffold_9 | 1879675 | 1880523 | C_unshiu_00102:mRNA_3.1 | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
| Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | Ciclev10019364m | scaffold_3 | 29351854 | 29354190 | C_unshiu_00549:mRNA_6.1 | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
| Bf0110 | - | - | - | - | - | - | SI297 | Ciclev10014639m | scaffold_2 | 35235517 | 35237892 | C_unshiu_00048:mRNA_48.1 | C_unshiu_00048 | 306412 | 308620 | 9-cis-epoxycarotenoid dioxygenase 1 | ||||||||||||
| Gn0061.2 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10031014m | scaffold_4 | 25500601 | 25505812 | C_unshiu_00001:mRNA_343.1 | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-06 | 20.248 | ||||||||||
| Gn0071 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI363 | Ciclev10031039m | scaffold_4 | 25506446 | 25511133 | C_unshiu_00001:mRNA_343.1 | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-07 | 86.113 | |||||||||
| Lp0208 | - | - | - | - | - | - | Ciclev10018482m | scaffold_3 | 45704361 | 45713084 | C_unshiu_00326:mRNA_24.1 | C_unshiu_00326 | 146528 | 154002 | ABC transporter C family member 3 | AGI-03 | 15.136 | NAT-03 | 28.397 | |||||||||
| Cp0336 | - | - | - | - | - | - | Ciclev10004655m | scaffold_9 | 31244440 | 31250356 | C_unshiu_00003:mRNA_113.1 | C_unshiu_00003 | 809668 | 815079 | ABC transporter D family member 2, chloroplastic | AGI-03 | 79.515 | |||||||||||
| Cp1483 | - | - | - | - | - | - | Ciclev10020574m | scaffold_3 | 20762974 | 20770394 | C_unshiu_00692:mRNA_14.1 | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
| Tf0350 | OOthers | O | - | - | - | - | - | SI132 | Ciclev10019034m | scaffold_3 | 8914744 | 8921411 | C_unshiu_00695:mRNA_7.1 | C_unshiu_00695 | 71483 | 77987 | Acetyl-coenzyme A synthetase | AGI-05 | 43.295 | |||||||||
| Cp0249 | - | - | - | - | - | - | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_14.1 | C_unshiu_00457 | 96540 | 99356 | Acetyltransferase component of pyruvate dehydrogenase complex | AGI-09 | 41.336 | |||||||||||
| Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
| Mf0090 | AAvailable marker | - | O | - | - | O | O | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
| Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10022720m | scaffold_3 | 43447942 | 43449920 | C_unshiu_00411:mRNA_15.1 | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
| Lp0219 | - | - | - | - | - | - | Ciclev10032329m | scaffold_4 | 6128952 | 6131314 | C_unshiu_01202:mRNA_8.1 | C_unshiu_01202 | 57691 | 60017 | Acyl-CoA N-acyltransferases superfamily protein isoform 1 | AGI-01 | 61.636 | NAT-01S | 60.000 | |||||||||
| Cp0185 | - | - | - | - | - | - | Ciclev10002024m | scaffold_5 | 34558362 | 34564638 | C_unshiu_00190:mRNA_33.1 | C_unshiu_00190 | 230947 | 237587 | Adenine phosphoribosyltransferase | AGI-03 | 51.129 | |||||||||||
| Lp0013 | - | - | - | - | - | - | Ciclev10004852m | scaffold_9 | 16971264 | 16973312 | C_unshiu_00122:mRNA_43.1 | C_unshiu_00122 | 389000 | 391027 | Adenosylhomocysteinase | KmG-09 | 15.606 | |||||||||||
| Af1679 | - | - | - | - | - | - | Ciclev10021896m | scaffold_3 | 4260126 | 4262819 | C_unshiu_00186:mRNA_34.1 | C_unshiu_00186 | 288266 | 290432 | Adenylate kinase | AGI-05 | 29.035 | |||||||||||
| Mf0084 | OOthers | - | - | - | - | - | - | SI383 | Ciclev10012898m | scaffold_6 | 40381 | 43868 | C_unshiu_01371:mRNA_1.1 | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
| Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | Ciclev10022482m | scaffold_3 | 46814909 | 46817474 | C_unshiu_00053:mRNA_57.3 | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
| Ov0525 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10015260m | scaffold_2 | 15833142 | 15836770 | C_unshiu_01875:mRNA_4.1 | C_unshiu_01875 | 35983 | 39196 | ADP/ATP translocase 1 | AGI-06 | 91.522 | SA-06 | 27.092 | ||||||||
| Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | Ciclev10033176m | scaffold_4 | 16232756 | 16233365 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
| Tf0320 | - | - | - | - | - | - | SI203 | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 45.716 | ||||||||||
| Tf0043 | - | - | - | - | - | - | Ciclev10032519m | scaffold_4 | 24820269 | 24824732 | C_unshiu_00001:mRNA_295.1 | C_unshiu_00001 | 1871301 | 1874281 | Agamous-like MADS-box protein AGL15 | AGI-07 | 84.593 | |||||||||||
| Gn0037 | - | - | - | - | - | - | Ciclev10032578m | scaffold_4 | 21042049 | 21048279 | C_unshiu_00010:mRNA_111.3 | C_unshiu_00010 | 823068 | 829158 | Agamous-like MADS-box protein AGL9 homolog | AGI-08 | 55.656 | |||||||||||
| Tf0005.2 | AAvailable marker | O | - | - | - | - | O | Ciclev10032578m | scaffold_4 | 21042049 | 21048279 | C_unshiu_00010:mRNA_111.3 | C_unshiu_00010 | 823068 | 829158 | Agamous-like MADS-box protein AGL9 homolog | ||||||||||||
| Tf0059 | - | - | - | - | - | - | SI101 | Ciclev10007297m | scaffold_1 | 12883722 | 12897805 | C_unshiu_00450:mRNA_3.1 | C_unshiu_00450 | 36956 | 58462 | AGC family Serine/Threonine kinase family protein | AGI-01 | 56.416 | ||||||||||
| Af1447 | - | - | - | - | - | - | Ciclev10031155m | scaffold_4 | 22802995 | 22807340 | C_unshiu_00004:mRNA_35.1 | C_unshiu_00004 | 275820 | 279748 | Aldehyde dehydrogenase | AGI-07 | 70.744 | |||||||||||
| Ov0012 | - | - | - | - | - | - | Ciclev10019638m | scaffold_3 | 2933121 | 2937460 | C_unshiu_00092:mRNA_50.1 | C_unshiu_00092 | 356984 | 361021 | Aldehyde dehydrogenase | KmG-05S | 100.000 | |||||||||||
| Bf0150 | - | - | - | - | - | - | SI316,SI370 | Ciclev10004834m | scaffold_9 | 31018836 | 31027361 | C_unshiu_00003:mRNA_85.1 | C_unshiu_00003 | 596288 | 610960 | Aldehyde dehydrogenase | AGI-03 | 77.920 | RP-03 | 77.748 | ||||||||
| Cp0085 | O | - | - | - | - | - | Ciclev10012552m | scaffold_6 | 23364303 | 23366061 | C_unshiu_00098:mRNA_21.1 | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | AGI-04 | 42.183 | |||||||||||
| Al0020 | OOthers | - | - | - | - | - | - | Ciclev10012552m | scaffold_6 | 23364303 | 23366061 | C_unshiu_00098:mRNA_21.1 | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | KmG-04 | |||||||||||
| Cp0452 | AAvailable marker | - | - | - | - | O | O | Ciclev10030661m | scaffold_4 | 23575399 | 23582495 | C_unshiu_00001:mRNA_85.1 | C_unshiu_00001 | 566935 | 573821 | Alpha-amylase-like 3 isoform 1 | AGI-07 | 75.350 | ||||||||||
| Cp0813 | - | - | - | - | - | - | SI047 | Ciclev10011980m | scaffold_6 | 20638049 | 20641557 | C_unshiu_00046:mRNA_46.1 | C_unshiu_00046 | 406041 | 409549 | Alpha/beta fold hydrolase | AGI-04 | 58.655 | ||||||||||
| Cp0077 | O | - | - | - | - | - | Ciclev10015497m | scaffold_2 | 9849133 | 9852098 | C_unshiu_00049:mRNA_29.1 | C_unshiu_00049 | 210181 | 212829 | Altered inheritance of mitochondria protein 32 | AGI-08 | 54.867 | |||||||||||
| If0003 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI130 | Ciclev10015433m | scaffold_2 | 35470078 | 35472862 | C_unshiu_00048:mRNA_13.1 | C_unshiu_00048 | 64652 | 67377 | Aminomethyltransferase | AGI-06 | 18.136 | JtR-06S | 67.371 | |||||||
| Wy0003 | AAvailable marker | O | - | - | - | O | O | Ciclev10001202m | scaffold_5 | 37189653 | 37192231 | C_unshiu_00144:mRNA_30.1 | C_unshiu_00144 | 215223 | 217733 | Aminotransferase | AGI-09 | 46.823 | KmG-09 | 52.581 | NAT-09 | 69.467 | ||||||
| Bf0116 | - | - | - | - | - | - | SI260 | Ciclev10015490m | scaffold_2 | 7662753 | 7667440 | C_unshiu_00729:mRNA_11.1 | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
| Tf0221 | - | - | - | - | - | - | SI057,SI225 | Ciclev10025996m | scaffold_7 | 490750 | 492882 | C_unshiu_00488:mRNA_7.1 | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
| Bf0021 | O | - | - | - | - | - | Ciclev10031010m | scaffold_4 | 1058825 | 1062698 | C_unshiu_00012:mRNA_26.1 | C_unshiu_00012 | 227838 | 231495 | Anthranilate synthase component I | RP-07 | 52.587 | |||||||||||
| Af1086 | - | - | - | - | - | - | Ciclev10031563m | scaffold_4 | 10510018 | 10517939 | C_unshiu_00028:mRNA_1.2 | C_unshiu_00028 | 4115 | 12036 | AP-2 complex subunit mu | AGI-05 | 41.306 | |||||||||||
| Tf0337 | AAvailable marker | O | - | - | - | O | O | Ciclev10031846m | scaffold_4 | 19635415 | 19637061 | C_unshiu_00099:mRNA_23.1 | C_unshiu_00099 | 186480 | 188051 | Ap2 erf and b3 domain-containing transcription factor rav2 | AGI-07 | 54.869 | ||||||||||
| Cp0384 | AAvailable marker | O | - | - | - | O | O | Ciclev10015162m | scaffold_2 | 35422598 | 35425980 | C_unshiu_00048:mRNA_23.2 | C_unshiu_00048 | 111764 | 114820 | APS reductase | AGI-06 | 19.002 | ||||||||||
| Tf0424 | - | - | - | - | - | - | Ciclev10031190m | scaffold_4 | 23908189 | 23912723 | C_unshiu_00001:mRNA_134.1 | C_unshiu_00001 | 904872 | 908655 | Apyrase | AGI-07 | 77.041 | |||||||||||
| Lp0021 | AtAvailable marker | O | - | - | - | - | O | Ciclev10021502m | scaffold_3 | 1771668 | 1774647 | C_unshiu_00534:mRNA_8.2 | C_unshiu_00534 | 53508 | 55845 | Aquaporin | ||||||||||||
| Af1091 | O | - | - | - | - | - | Ciclev10021043m | scaffold_3 | 43316046 | 43317909 | C_unshiu_00411:mRNA_2.1 | C_unshiu_00411 | 11510 | 13352 | Arabinose 5-phosphate isomerase | AGI-05 | 52.655 | |||||||||||
| Fb0321 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10027873m | scaffold_8 | 6834487 | 6837762 | C_unshiu_00918:mRNA_1.1 | C_unshiu_00918 | 5010 | 7626 | Arginine decarboxylase 1 | AGI-08 | 56.405 | JtR-08 | 25.280 | ||||||||
| Af1515 | - | - | - | - | - | - | Ciclev10027760m | scaffold_8 | 20838053 | 20844872 | C_unshiu_00883:mRNA_4.1 | C_unshiu_00883 | 60978 | 104832 | Argonaute 1 | AGI-08 | 40.438 | |||||||||||
| Lp0229 | O | - | - | - | - | - | Ciclev10015636m | scaffold_2 | 24637053 | 24639946 | C_unshiu_00136:mRNA_24.1 | C_unshiu_00136 | 221432 | 223640 | ARM repeat superfamily protein | RP-06.1 | 25.198 | |||||||||||
| Al0201 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10014752m | scaffold_2 | 32780830 | 32782885 | C_unshiu_00153:mRNA_49.1 | C_unshiu_00153 | 346248 | 348256 | Armadillo/beta-catenin-like repeat family protein, expressed | ||||||||||||
| Ov0121 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10028359m | scaffold_8 | 20352232 | 20354410 | C_unshiu_00320:mRNA_8.1 | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | NAT-081 | |||||||||||
| Ov0125 | AAvailable marker | - | - | - | - | O | O | Ciclev10028359m | scaffold_8 | 20352232 | 20354410 | C_unshiu_00320:mRNA_8.1 | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | AGI-08 | 41.398 | ||||||||||
| Ks9003 | AAvailable marker | - | - | - | - | - | O | Ciclev10014733m | scaffold_2 | 8436110 | 8440408 | C_unshiu_00494:mRNA_1.1 | C_unshiu_00494 | 7014 | 11146 | Ascorbate oxidase | KmG-09 | 19.560 | JtR-09S | 5.836 | ||||||||
| Ov0526 | OOthers | - | - | - | - | - | - | Ciclev10001212m | scaffold_5 | 21522433 | 21525218 | C_unshiu_00201:mRNA_11.2 | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | KmG-09 | JtR-09S | 0.758 | NAT-09 | ||||||||
| Gn0046 | - | - | - | - | - | - | Ciclev10001212m | scaffold_5 | 21522433 | 21525218 | C_unshiu_00201:mRNA_11.2 | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | AGI-07 | 64.812 | JtR-08 | 23.181 | |||||||||
| Tf0152 | AAvailable marker | O | - | - | - | O | O | Ciclev10021000m | scaffold_3 | 2002427 | 2008126 | C_unshiu_01105:mRNA_2.1 | C_unshiu_01105 | 3681 | 8106 | AT-hook motif nuclear localized protein 1 | AGI-05 | 8.506 | ||||||||||
| Tf0032 | AAvailable marker | O | - | - | - | O | O | Ciclev10026014m | scaffold_7 | 94155 | 97631 | C_unshiu_00706:mRNA_8.1 | C_unshiu_00706 | 51525 | 54837 | AT-hook motif nuclear-localized protein 10 | AGI-02 | 78.531 | ||||||||||
| Fb0369 | - | - | - | - | - | - | Ciclev10019885m | scaffold_3 | 7792188 | 7795727 | C_unshiu_01545:mRNA_3.1 | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
| Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10030351m | scaffold_8 | 67997 | 74191 | C_unshiu_01137:mRNA_4.1 | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
| Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | Ciclev10007563m | scaffold_1 | 24898769 | 24905716 | C_unshiu_00341:mRNA_22.1 | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
| Cp0415 | - | - | - | - | - | - | Ciclev10011681m | scaffold_6 | 22213544 | 22219300 | C_unshiu_00074:mRNA_13.1 | C_unshiu_00074 | 81301 | 86950 | ATA15 protein | AGI-04 | 50.134 | |||||||||||
| Cp0747 | - | - | - | - | - | - | Ciclev10015418m | scaffold_2 | 11084960 | 11088767 | C_unshiu_00184:mRNA_32.1 | C_unshiu_00184 | 282295 | 285277 | ATP synthase protein I | AGI-09 | 85.816 | |||||||||||
| Lp0112 | AAvailable marker | O | - | - | - | - | - | Ciclev10032923m | scaffold_4 | 3749809 | 3751724 | C_unshiu_00236:mRNA_28.1 | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
| Cp1887 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10010991m | scaffold_6 | 25193617 | 25201413 | C_unshiu_00009:mRNA_34.1 | C_unshiu_00009 | 183041 | 190334 | ATP-dependent chaperone ClpB | ||||||||||||
| Cp0076 | O | - | - | - | - | - | Ciclev10021577m | scaffold_3 | 6329133 | 6332201 | C_unshiu_01248:mRNA_3.1 | C_unshiu_01248 | 39031 | 42057 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-05 | 35.411 | |||||||||||
| Cp0297 | - | - | - | - | - | - | Ciclev10028989m | scaffold_8 | 2135445 | 2138606 | C_unshiu_00024:mRNA_26.2 | C_unshiu_00024 | 197656 | 201866 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-08 | 78.209 | |||||||||||
| Cp0419 | AAvailable marker | - | O | - | - | O | O | Ciclev10002215m | scaffold_5 | 28815314 | 28816638 | C_unshiu_00758:mRNA_1.1 | C_unshiu_00758 | 794 | 4329 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-09 | 88.739 | SA-09 | 44.226 | ||||||||
| Cp0895 | AAvailable marker | - | - | - | - | O | O | Ciclev10011406m | scaffold_6 | 19241700 | 19246874 | C_unshiu_00089:mRNA_3.1 | C_unshiu_00089 | 9945 | 14749 | ATP-dependent RNA helicase | AGI-04 | 67.375 | ||||||||||
| Bf0174 | O | - | - | - | - | - | SI282 | Ciclev10019861m | scaffold_3 | 3551542 | 3555978 | C_unshiu_00120:mRNA_17.1 | C_unshiu_00120 | 130029 | 134158 | Atp-dependent RNA helicase | AGI-05 | 25.049 | ||||||||||
| Fb0373 | O | - | - | - | - | - | Ciclev10000030m | scaffold_5 | 6404463 | 6435349 | C_unshiu_00034:mRNA_15.1 | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
| Cp1885 | AAvailable marker | - | - | - | - | - | O | Ciclev10014471m | scaffold_2 | 11418331 | 11422116 | C_unshiu_01218:mRNA_4.1 | C_unshiu_01218 | 14084 | 22447 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic | ||||||||||||
| Tf0029 | - | - | - | - | - | - | Ciclev10027901m | scaffold_8 | 21887372 | 21893128 | C_unshiu_00500:mRNA_16.1 | C_unshiu_00500 | 147319 | 151840 | Auxin response factor | AGI-08 | 27.318 | |||||||||||
| Wy0056 | Wy0056.em | AAvailable marker | - | - | - | - | O | O | Ciclev10014198m | scaffold_2 | 31740431 | 31747095 | C_unshiu_00027:mRNA_81.1 | C_unshiu_00027 | 521555 | 527308 | Auxin response factor | AGI-06 | 36.788 | |||||||||
| Tf0304 | - | - | - | - | - | - | Ciclev10000491m | scaffold_5 | 953167 | 960232 | C_unshiu_00033:mRNA_32.1 | C_unshiu_00033 | 311804 | 317751 | Auxin response factor | AGI-09 | 113.306 | |||||||||||
| Tf0065 | - | - | - | - | - | - | SI142 | Ciclev10030696m | scaffold_4 | 13945795 | 13951313 | C_unshiu_00357:mRNA_3.1 | C_unshiu_00357 | 35189 | 39739 | Auxin response factor | AGI-07 | 41.876 | ||||||||||
| Tf0345 | - | - | - | - | - | - | SI011 | Ciclev10027918m | scaffold_8 | 22248129 | 22254029 | C_unshiu_00639:mRNA_3.1 | C_unshiu_00639 | 31842 | 37665 | Auxin response factor | ||||||||||||
| Tf0311 | AAvailable marker | O | - | - | - | O | O | Ciclev10011596m | scaffold_6 | 15932016 | 15936176 | C_unshiu_00779:mRNA_8.1 | C_unshiu_00779 | 78105 | 81377 | Auxin transporter-like protein 2 | AGI-08 | 91.890 | ||||||||||
| Tf0300 | AAvailable marker | O | O | - | - | O | O | Ciclev10022370m | scaffold_3 | 43862440 | 43863744 | C_unshiu_01051:mRNA_10.1 | C_unshiu_01051 | 83417 | 84406 | Auxin-induced protein IAA4 | AGI-05 | 54.726 | ||||||||||
| Tf0172 | O | - | - | - | - | - | Ciclev10026400m | scaffold_7 | 9976621 | 9980176 | C_unshiu_00496:mRNA_5.1 | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
| Tf0036 | AAvailable marker | O | - | - | - | O | O | Ciclev10022032m | scaffold_3 | 43850269 | 43852816 | C_unshiu_01051:mRNA_11.1 | C_unshiu_01051 | 94369 | 96339 | Auxin-responsive protein IAA14 | AGI-05 | 53.260 | ||||||||||
| Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | Ciclev10002290m | scaffold_5 | 29400846 | 29403554 | C_unshiu_00110:mRNA_26.1 | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
| Tf0093.2 | AAvailable marker | O | - | - | - | O | O | Ciclev10002569m | scaffold_5 | 29413143 | 29414562 | C_unshiu_00110:mRNA_25.1 | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | AGI-09 | 86.512 | ||||||||||
| Tf0393 | AAvailable marker | O | - | - | - | - | O | Ciclev10002569m | scaffold_5 | 29413143 | 29414562 | C_unshiu_00110:mRNA_25.1 | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | RP-09 | 29.347 | ||||||||||
| Tf0061 | - | - | - | - | - | - | SI150,SI186 | Ciclev10001592m | scaffold_5 | 35159690 | 35164384 | C_unshiu_00764:mRNA_4.1 | C_unshiu_00764 | 30899 | 36628 | Auxin-responsive protein IAA8 | AGI-09 | 61.651 | ||||||||||
| Tf0325 | OOthers | O | - | - | - | - | - | Ciclev10029355m | scaffold_8 | 6700441 | 6703748 | C_unshiu_02974:mRNA_2.1 | C_unshiu_02974 | 10142 | 13418 | B-box type zinc finger family protein | AGI-08 | 57.386 | ||||||||||
| Al0239 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10026364m | scaffold_7 | 16185818 | 16187223 | C_unshiu_00371:mRNA_7.1 | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | ||||||||||||
| Af3023 | - | - | - | - | - | - | Ciclev10026364m | scaffold_7 | 16185818 | 16187223 | C_unshiu_00371:mRNA_7.1 | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | AGI-02 | 21.337 | |||||||||||
| Af2596 | - | - | - | - | - | - | Ciclev10002840m | scaffold_5 | 38154975 | 38155769 | C_unshiu_00319:mRNA_29.1 | C_unshiu_00319 | 189073 | 189599 | Basic blue protein | AGI-09 | 57.830 | |||||||||||
| Af1205 | - | - | - | - | - | - | Ciclev10002396m | scaffold_5 | 34161721 | 34162652 | C_unshiu_00196:mRNA_4.1 | C_unshiu_00196 | 15219 | 16117 | Basic helix-loop-helix DNA-binding superfamily protein, putative | AGI-09 | 64.754 | |||||||||||
| Tf0088 | MDisagree by Marco analysis | O | - | - | - | - | - | SI066 | Ciclev10001291m | scaffold_5 | 41275201 | 41278829 | C_unshiu_00127:mRNA_34.1 | C_unshiu_00127 | 251592 | 254627 | Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | AGI-09 | 35.763 | |||||||||
| Tf0070 | OOthers | O | - | - | - | - | - | SI277 | Ciclev10002250m | scaffold_5 | 39748754 | 39753073 | C_unshiu_01089:mRNA_6.1 | C_unshiu_01089 | 22643 | 26826 | Basic helix-loop-helix family protein | AGI-09 | 45.029 | |||||||||
| Al0029 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00305:mRNA_10.1 | C_unshiu_00305 | 69938 | 73026 | Basic helix-loop-helix transcription factor | AGI-01 | 37.357 | JtR-01S | 50.000 | ||||||||||||
| Tf0356 | - | - | - | - | - | - | SI134,SI160 | Ciclev10029063m | scaffold_8 | 998289 | 1001763 | C_unshiu_00041:mRNA_95.3 | C_unshiu_00041 | 588335 | 591780 | Basic-leucine zipper (BZIP) transcription factor family | AGI-08 | 83.743 | ||||||||||
| Wy0006 | O | - | - | - | - | - | Ciclev10021901m | scaffold_3 | 4903592 | 4905871 | C_unshiu_00628:mRNA_6.1 | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | KmG-05S | 19.072 | JtR-05 | 19.698 | NAT-05 | 21.803 | |||||||
| Bf0165 | - | - | - | - | - | - | SI280 | Ciclev10021901m | scaffold_3 | 4903592 | 4905871 | C_unshiu_00628:mRNA_6.1 | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
| Bf0415 | - | - | - | - | - | - | C_unshiu_00643:mRNA_7.1 | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
| Em0003 | - | - | - | - | - | - | Ciclev10011201m | scaffold_6 | 19840881 | 19844299 | C_unshiu_00043:mRNA_48.1 | C_unshiu_00043 | 360776 | 363775 | BEL1-like homeodomain protein 1 | AGI-08 | 56.724 | |||||||||||
| Tf0258 | - | - | - | - | - | - | SI234 | Ciclev10000508m | scaffold_5 | 41372513 | 41377106 | C_unshiu_00127:mRNA_21.1 | C_unshiu_00127 | 163658 | 166645 | BEL1-like homeodomain protein 6 | ||||||||||||
| Tf0405 | - | - | - | - | - | - | Ciclev10027952m | scaffold_8 | 6025802 | 6031497 | C_unshiu_00220:mRNA_2.1 | C_unshiu_00220 | 48148 | 53214 | BEL1-like homeodomain protein 6 | AGI-08 | 61.643 | |||||||||||
| Em0005 | Fb1892.em | - | - | - | - | - | - | C_unshiu_00168:mRNA_8.1 | C_unshiu_00168 | 76386 | 80254 | BEL1-like homeodomain protein 9 | AGI-07 | |||||||||||||||
| Gn0014.2 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10005481m | scaffold_9 | 29488658 | 29491181 | C_unshiu_00056:mRNA_20.1 | C_unshiu_00056 | 144107 | 146527 | Beta-carotene hydroxylase 1 | ||||||||||||
| Fb0478 | - | - | - | - | - | - | Ciclev10008010m | scaffold_1 | 14592248 | 14596429 | C_unshiu_00071:mRNA_18.1 | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
| Cp1556 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10018756m | scaffold_3 | 21432494 | 21440948 | C_unshiu_00175:mRNA_9.1 | C_unshiu_00175 | 91338 | 99600 | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic | AGI-05 | 40.337 | ||||||||||
| Af1639 | - | - | - | - | - | - | Ciclev10012116m | scaffold_6 | 23462487 | 23466580 | C_unshiu_00098:mRNA_36.1 | C_unshiu_00098 | 239683 | 243712 | Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 | AGI-04 | 6.635 | |||||||||||
| Lp0211 | O | - | - | - | - | - | Ciclev10009567m | scaffold_1 | 25816949 | 25818472 | C_unshiu_00066:mRNA_48.1 | C_unshiu_00066 | 279404 | 280861 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 | AGI-01 | 30.175 | RP-01 | 24.533 | |||||||||
| Cp1427 | AAvailable marker | - | - | - | - | O | O | Ciclev10021746m | scaffold_3 | 45576863 | 45579197 | C_unshiu_00326:mRNA_5.1 | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
| Al0039 | - | - | - | - | - | - | C_unshiu_00018:mRNA_107.1 | C_unshiu_00018 | 723553 | 725648 | Bifunctional protein FolD | AGI-05 | 95.305 | |||||||||||||||
| Fb0110 | O | - | - | - | - | - | SI246 | Ciclev10000900m | scaffold_5 | 8512380 | 8517835 | C_unshiu_00033:mRNA_4.1 | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
| Gmom03 | - | - | - | - | - | - | Ciclev10019436m | scaffold_3 | 1864604 | 1871328 | C_unshiu_01325:mRNA_3.1 | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
| Ov0520 | OOthers | O | - | - | - | - | - | Ciclev10029053m | scaffold_8 | 4712393 | 4713689 | C_unshiu_00438:mRNA_3.1 | C_unshiu_00438 | 34343 | 35619 | BURP domain-containing protein | AGI-08 | 33.144 | JtR-08 | 26.748 | ||||||||
| Tf0021 | AAvailable marker | - | - | - | - | - | O | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | ||||||||||||
| Af1499 | - | - | - | - | - | - | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | AGI-04 | ||||||||||||
| Tf0335 | - | - | - | - | - | - | SI014,SI168 | Ciclev10033529m | scaffold_4 | 2457798 | 2458868 | C_unshiu_00979:mRNA_19.1 | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
| Tf0019 | - | - | - | - | - | - | SI056,SI347 | Ciclev10001255m | scaffold_5 | 41881297 | 41883386 | C_unshiu_00009:mRNA_161.1 | C_unshiu_00009 | 1049324 | 1051358 | C2H2-like zinc finger protein | AGI-09 | 34.799 | ||||||||||
| Lp0004 | OOthers | - | - | - | - | - | - | Ciclev10026144m | scaffold_7 | 15376818 | 15378771 | C_unshiu_00703:mRNA_1.1 | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
| Cp0089 | Bno homozygous cultivar with minor allele | O | - | O | - | - | - | Ciclev10032543m | scaffold_4 | 23858830 | 23861090 | C_unshiu_00001:mRNA_128.1 | C_unshiu_00001 | 852968 | 856494 | CAAX amino terminal protease family protein | AGI-07 | 77.194 | ||||||||||
| Ov0013 | OOthers | - | - | - | - | - | - | Ciclev10005251m | scaffold_9 | 18058387 | 18060752 | C_unshiu_00556:mRNA_14.1 | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
| Bf0030 | O | - | - | - | - | - | Ciclev10022841m | scaffold_3 | 46452893 | 46453717 | C_unshiu_00627:mRNA_10.1 | C_unshiu_00627 | 45215 | 45931 | Calvin cycle protein CP12 | RP-05 | 58.661 | |||||||||||
| Bf0212 | - | - | - | - | - | - | SI332 | Ciclev10016442m | scaffold_2 | 9206686 | 9211152 | C_unshiu_00004:mRNA_52.2 | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
| Gn0066.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10011230m | scaffold_6 | 19578179 | 19583475 | C_unshiu_00043:mRNA_12.1 | C_unshiu_00043 | 90212 | 94791 | Carotenoid isomerase | AGI-04 | |||||||||||
| Bf1192 | - | - | - | - | - | - | Ciclev10008160m | scaffold_1 | 10678653 | 10684627 | C_unshiu_00242:mRNA_11.1 | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
| Af1177 | - | - | - | - | - | - | Ciclev10005989m | scaffold_9 | 2168387 | 2170546 | C_unshiu_00085:mRNA_13.1 | C_unshiu_00085 | 78341 | 80308 | CASP-like protein 1E1 | AGI-03 | 18.579 | |||||||||||
| Al0317 | - | - | - | - | - | - | Ciclev10021392m | scaffold_3 | 3006218 | 3008357 | C_unshiu_00092:mRNA_60.1 | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
| Al0223 | - | - | - | - | - | - | Ciclev10011771m | scaffold_6 | 17438270 | 17440122 | C_unshiu_00008:mRNA_127.1 | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
| Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | Ciclev10008225m | scaffold_1 | 1070373 | 1072218 | C_unshiu_00005:mRNA_43.1 | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
| Af1379 | - | - | - | - | - | - | Ciclev10026357m | scaffold_7 | 3456105 | 3460607 | C_unshiu_00301:mRNA_21.2 | C_unshiu_00301 | 134429 | 138770 | CBS domain-containing protein CBSX1, chloroplastic | AGI-02 | 68.467 | |||||||||||
| Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | Ciclev10008537m | scaffold_1 | 18068297 | 18070262 | C_unshiu_00187:mRNA_17.1 | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
| Cp1216 | AAvailable marker | - | - | - | - | O | O | Ciclev10017113m | scaffold_2 | 12112790 | 12113903 | C_unshiu_00026:mRNA_6.1 | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
| Tf0271 | Bno homozygous cultivar with minor allele | O | O | - | O | - | - | Ciclev10010976m | scaffold_6 | 11707953 | 11715646 | C_unshiu_01619:mRNA_7.1 | C_unshiu_01619 | 42347 | 50640 | CCR4-NOT transcription complex subunit 4 | AGI-08 | 95.613 | ||||||||||
| Al0037 | - | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | |||||||||||
| Al0037.2 | Al0037.k | O | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | ||||||||||
| Cp1852 | - | - | - | - | - | - | Ciclev10010530m | scaffold_1 | 22711668 | 22715696 | C_unshiu_00103:mRNA_19.2 | C_unshiu_00103 | 116559 | 121057 | Cell differentiation protein rcd1 | AGI-02 | 9.592 | |||||||||||
| Fb0326 | O | - | - | - | - | - | Ciclev10002506m | scaffold_5 | 43051579 | 43053394 | C_unshiu_00370:mRNA_38.1 | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
| Cp1584 | AAvailable marker | - | - | - | - | - | O | Ciclev10031523m | scaffold_4 | 201556 | 204527 | C_unshiu_00168:mRNA_36.1 | C_unshiu_00168 | 285304 | 287905 | Cell division cycle 20.1, cofactor of APC complex | ||||||||||||
| Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | Ciclev10018691m | scaffold_3 | 34696661 | 34702240 | C_unshiu_00669:mRNA_17.2 | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
| Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10024860m | scaffold_7 | 8603450 | 8610239 | C_unshiu_00290:mRNA_28.1 | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
| Ov0413 | - | - | - | - | - | - | Ciclev10028322m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
| Al0632 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10028775m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | AGI-08 | 56.724 | JtR-08 | 18.952 | ||||||||
| Af1424 | - | - | - | - | - | - | Ciclev10008953m | scaffold_1 | 18688873 | 18690138 | C_unshiu_00137:mRNA_44.1 | C_unshiu_00137 | 354434 | 355481 | CFE protein | AGI-01 | 43.613 | |||||||||||
| Lp0232 | O | - | - | - | - | - | Ciclev10030590m | scaffold_4 | 21120135 | 21127140 | C_unshiu_00010:mRNA_105.1 | C_unshiu_00010 | 751317 | 757205 | CHASE-domain containing histidine kinase 1 | RP-07 | 19.079 | |||||||||||
| Fb1227 | - | - | - | - | - | - | Ciclev10004375m | scaffold_9 | 3367718 | 3376062 | C_unshiu_00051:mRNA_60.1 | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
| Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | Ciclev10016280m | scaffold_2 | 23891814 | 23893095 | C_unshiu_00081:mRNA_50.1 | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
| Fb0827 | O | - | - | - | - | - | SI215,SI301 | Ciclev10004432m | scaffold_9 | 2353442 | 2357780 | C_unshiu_00394:mRNA_9.1 | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
| Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | Ciclev10004620m | scaffold_9 | 7579900 | 7583093 | C_unshiu_00063:mRNA_61.1 | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
| Cp1627 | AAvailable marker | - | - | - | - | O | O | Ciclev10022024m | scaffold_3 | 13309398 | 13310636 | C_unshiu_00431:mRNA_6.1 | C_unshiu_00431 | 44507 | 45451 | Chloroplast small heat shock protein | AGI-05 | 41.272 | ||||||||||
| Bf0031 | O | - | - | - | - | - | Ciclev10031547m | scaffold_4 | 4077557 | 4083819 | C_unshiu_00306:mRNA_12.1 | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
| Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | Ciclev10028839m | scaffold_8 | 24721937 | 24724569 | C_unshiu_00984:mRNA_8.1 | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
| Lg2004 | - | - | - | - | - | - | Ciclev10028785m | scaffold_8 | 2599717 | 2602090 | C_unshiu_00152:mRNA_53.1 | C_unshiu_00152 | 347645 | 349890 | Cinnamyl alcohol dehydrogenase | AGI-08 | 76.045 | |||||||||||
| Af1645 | - | - | - | - | - | - | Ciclev10000427m | scaffold_5 | 2472805 | 2477375 | C_unshiu_00127:mRNA_11.1 | C_unshiu_00127 | 52207 | 62775 | Class I (E and Q) tRNA synthetase | AGI-09 | 90.878 | |||||||||||
| Fb1784 | - | - | - | - | - | - | Ciclev10028959m | scaffold_8 | 445469 | 446936 | C_unshiu_02466:mRNA_2.1 | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
| Lp0133 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021187m | scaffold_3 | 39657613 | 39660222 | C_unshiu_00037:mRNA_84.1 | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
| Lp0145 | - | - | - | - | - | - | C_unshiu_01491:mRNA_8.1 | C_unshiu_01491 | 47122 | 50568 | Class I glutamine amidotransferase superfamily protein | KmG-05S | 40.802 | JtR-05 | ||||||||||||||
| Tf0092 | - | - | - | - | - | - | SI099 | Ciclev10007435m | scaffold_1 | 3285601 | 3291534 | C_unshiu_00006:mRNA_60.1 | C_unshiu_00006 | 496127 | 502071 | Class III HD-Zip family protein | ||||||||||||
| Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | Ciclev10027790m | scaffold_8 | 21953129 | 21960709 | C_unshiu_02574:mRNA_1.1 | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
| Bf0142 | O | - | - | - | - | - | Ciclev10024891m | scaffold_7 | 8508837 | 8516759 | C_unshiu_00290:mRNA_16.1 | C_unshiu_00290 | 151884 | 158772 | Class III homeodomain leucine zipper protein | AGI-02 | 5.104 | |||||||||||
| Tf0208 | - | - | - | - | - | - | SI181 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
| Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
| Gn0050 | - | - | - | - | - | - | Ciclev10024602m | scaffold_3 | 5382490 | 5385009 | C_unshiu_00014:mRNA_87.1 | C_unshiu_00014 | 637698 | 638678 | CRT binding factor 3 | AGI-05 | 29.035 | KmG-05S | 21.884 | JtR-05 | 19.008 | |||||||
| Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | Ciclev10022680m | scaffold_3 | 8528292 | 8529236 | C_unshiu_00154:mRNA_1.1 | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
| Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | C_unshiu_00679:mRNA_13.1 | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
| Wy0004 | - | - | - | - | - | - | C_unshiu_02819:mRNA_2.1 | C_unshiu_02819 | 2728 | 4118 | CXE carboxylesterase | AGI-08 | 70.463 | NAT-082 | 65.434 | |||||||||||||
| Bf0184 | O | - | - | - | - | - | Ciclev10021248m | scaffold_3 | 24893551 | 24898675 | C_unshiu_00286:mRNA_27.1 | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
| Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | C_unshiu_00009:mRNA_117.1 | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
| Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | Ciclev10019826m | scaffold_3 | 6502231 | 6504139 | C_unshiu_00521:mRNA_1.1 | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
| Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10025343m | scaffold_7 | 19024295 | 19026021 | C_unshiu_00468:mRNA_22.1 | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
| Af1096 | - | - | - | - | - | - | Ciclev10020597m | scaffold_3 | 42061488 | 42063267 | C_unshiu_00778:mRNA_10.1 | C_unshiu_00778 | 89741 | 91509 | Cytochrome P450 82A4 | AGI-05 | 51.052 | |||||||||||
| Cp1709 | AAvailable marker | - | - | - | - | - | O | Ciclev10025382m | scaffold_7 | 1450748 | 1452915 | C_unshiu_00624:mRNA_14.1 | C_unshiu_00624 | 137579 | 139378 | Cytochrome P450 84A1 | ||||||||||||
| Mf0076 | AAvailable marker | - | - | - | - | O | O | Ciclev10012554m | scaffold_6 | 11704199 | 11706676 | C_unshiu_00207:mRNA_15.1 | C_unshiu_00207 | 132539 | 134984 | Cytosolic ascorbate peroxidase | AGI-08 | 93.624 | ||||||||||
| Cp2208 | AAvailable marker | - | - | - | - | - | O | Ciclev10021564m | scaffold_3 | 7420176 | 7425027 | C_unshiu_00995:mRNA_4.1 | C_unshiu_00995 | 39031 | 43144 | D-ribulose-5-phosphate-3-epimerase isoform 1 | ||||||||||||
| Bf0159 | - | - | - | - | - | - | SI074 | Ciclev10016059m | scaffold_2 | 13502268 | 13505597 | C_unshiu_01990:mRNA_1.1 | C_unshiu_01990 | 10471 | 13748 | DCD (Development and cell death) domain protein | RP-06.1 | 23.326 | ||||||||||
| Mf0034 | OOthers | O | - | - | - | - | - | Ciclev10031304m | scaffold_4 | 1559490 | 1563887 | C_unshiu_00012:mRNA_100.1 | C_unshiu_00012 | 732963 | 736971 | DEAD-box ATP-dependent RNA helicase 27 | RP-07 | 73.631 | ||||||||||
| Cp0454 | - | - | - | - | - | - | Ciclev10030551m | scaffold_4 | 23200936 | 23206254 | C_unshiu_00001:mRNA_32.1 | C_unshiu_00001 | 214996 | 218740 | DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic | AGI-07 | 73.034 | |||||||||||
| Gn0042 | - | - | - | - | - | - | Ciclev10009742m | scaffold_1 | 25370176 | 25371445 | C_unshiu_00498:mRNA_21.1 | C_unshiu_00498 | 140388 | 142383 | Deficiens | JtR-08 | 6.490 | |||||||||||
| Al0003 | Al0003.2 | - | - | - | - | - | - | Ciclev10024637m | scaffold_3 | 41697052 | 41697860 | C_unshiu_01778:mRNA_2.1 | C_unshiu_01778 | 27362 | 28139 | Dehydrin COR15 | AGI-05 | 49.499 | ||||||||||
| Af1693 | - | - | - | - | - | - | Ciclev10016657m | scaffold_2 | 32069149 | 32072079 | C_unshiu_00027:mRNA_31.2 | C_unshiu_00027 | 205885 | 208484 | DERLIN-2.2 isoform 1 | AGI-06 | 35.794 | |||||||||||
| Tf0124 | - | - | - | - | - | - | Ciclev10007717m | scaffold_1 | 27457358 | 27462893 | C_unshiu_00237:mRNA_37.1 | C_unshiu_00237 | 259818 | 273281 | Dethiobiotin synthase | AGI-01 | 34.062 | |||||||||||
| Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | Ciclev10001621m | scaffold_5 | 34294853 | 34297359 | C_unshiu_03047:mRNA_1.1 | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
| Ov0313 | OOthers | - | - | - | - | - | - | Ciclev10002372m | scaffold_5 | 41844984 | 41847835 | C_unshiu_00009:mRNA_157.1 | C_unshiu_00009 | 1013478 | 1016014 | Diphthine synthase | KmG-09 | 79.072 | ||||||||||
| Al0215 | OOthers | - | - | - | - | - | - | Ciclev10007304m | scaffold_1 | 21918726 | 21922966 | C_unshiu_00595:mRNA_18.1 | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
| Bf0409 | - | - | - | - | - | - | C_unshiu_00616:mRNA_6.1 | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
| Al0225 | - | - | - | - | - | - | Ciclev10001539m | scaffold_5 | 41093725 | 41097411 | C_unshiu_01543:mRNA_6.1 | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
| Fb1134.2 | - | - | - | - | - | - | Ciclev10030474m | scaffold_4 | 9547707 | 9559498 | C_unshiu_00140:mRNA_14.1 | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
| Tf0342 | - | - | - | - | - | - | SI151 | Ciclev10019088m | scaffold_3 | 1649410 | 1655963 | C_unshiu_00343:mRNA_23.1 | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
| Cp0540 | - | - | - | - | - | - | Ciclev10020181m | scaffold_3 | 10427313 | 10435293 | C_unshiu_02340:mRNA_1.1 | C_unshiu_02340 | 2005 | 8306 | DNA repair protein reca, putative | AGI-05 | 42.191 | |||||||||||
| Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | Ciclev10027769m | scaffold_8 | 13408610 | 13413938 | C_unshiu_01226:mRNA_1.1 | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
| Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | Ciclev10030023m | scaffold_8 | 2673135 | 2674232 | C_unshiu_00152:mRNA_38.1 | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
| Cp0675 | AAvailable marker | O | - | - | - | O | O | Ciclev10030633m | scaffold_4 | 20294240 | 20301426 | C_unshiu_00015:mRNA_33.1 | C_unshiu_00015 | 302440 | 309360 | DNA-directed RNA polymerase | AGI-07 | 59.793 | ||||||||||
| Tf0250 | AAvailable marker | O | - | - | - | O | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | AGI-08 | 73.105 | ||||||||||
| Tf0431 | AAvailable marker | O | - | - | - | - | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | ||||||||||||
| Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | Ciclev10015385m | scaffold_2 | 4021167 | 4024377 | C_unshiu_00992:mRNA_13.1 | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
| Af1487 | - | - | - | - | - | - | Ciclev10028531m | scaffold_8 | 18155481 | 18157658 | C_unshiu_00251:mRNA_22.1 | C_unshiu_00251 | 205180 | 207288 | DnaJ | AGI-08 | 47.330 | |||||||||||
| Bf0213 | - | - | - | - | - | - | SI097 | Ciclev10000820m | scaffold_5 | 37693882 | 37699178 | C_unshiu_00238:mRNA_2.1 | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
| Tf0286 | DDominant marker | O | - | - | - | - | - | Ciclev10011556m | scaffold_6 | 25001586 | 25004619 | C_unshiu_01279:mRNA_6.1 | C_unshiu_01279 | 43222 | 46082 | Dof zinc finger protein DOF5.2 | AGI-04 | 32.710 | ||||||||||
| Gn0019 | - | - | - | - | - | - | Ciclev10002883m | scaffold_5 | 26949951 | 26952841 | C_unshiu_02041:mRNA_4.1 | C_unshiu_02041 | 18003 | 20672 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 | KmG-09 | 17.972 | JtR-09S | 22.316 | |||||||||
| Al0643 | - | - | - | - | - | - | Ciclev10012685m | scaffold_6 | 11126658 | 11131076 | C_unshiu_02977:mRNA_1.1 | C_unshiu_02977 | 1950 | 2673 | Dolichyldiphosphatase 1 | AGI-08 | 56.724 | |||||||||||
| Af1482 | - | - | - | - | - | - | Ciclev10001945m | scaffold_5 | 36550507 | 36552800 | C_unshiu_00657:mRNA_2.2 | C_unshiu_00657 | 28541 | 30831 | DRE binding transcription factor | AGI-09 | 49.255 | |||||||||||
| Cp0114 | - | - | - | - | - | - | Ciclev10027515m | scaffold_7 | 15446269 | 15449214 | C_unshiu_01960:mRNA_1.1 | C_unshiu_01960 | 1400 | 4642 | DS12 from 2D-PAGE of leaf protein, putative | AGI-02 | 21.337 | |||||||||||
| Gn0049 | - | - | - | - | - | - | Ciclev10028366m | scaffold_8 | 1604460 | 1606311 | C_unshiu_00024:mRNA_95.1 | C_unshiu_00024 | 699386 | 701126 | DUF1005 family protein | AGI-08 | 77.688 | JtR-08 | 17.757 | |||||||||
| Cp0057 | - | - | - | - | - | - | Ciclev10031335m | scaffold_4 | 24227703 | 24230754 | C_unshiu_00001:mRNA_187.1 | C_unshiu_00001 | 1244353 | 1247404 | DUF1336 family protein | AGI-07 | 79.269 | |||||||||||
| Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028879m | scaffold_8 | 19397294 | 19398741 | C_unshiu_02034:mRNA_3.1 | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
| Wy0059 | Wy0059.em | - | - | - | - | - | - | Ciclev10012904m | scaffold_6 | 8562431 | 8564865 | C_unshiu_00232:mRNA_33.1 | C_unshiu_00232 | 292640 | 294683 | DUF538 family protein | AGI-08 | 91.502 | ||||||||||
| Ov0515 | - | - | - | - | - | - | Ciclev10020337m | scaffold_3 | 14878427 | 14882285 | C_unshiu_01955:mRNA_4.1 | C_unshiu_01955 | 21970 | 26584 | DUF760 family protein | KmG-01 | 40.558 | |||||||||||
| Cp0431 | AAvailable marker | O | - | - | - | O | O | Ciclev10015731m | scaffold_2 | 27084177 | 27089027 | C_unshiu_00017:mRNA_35.1 | C_unshiu_00017 | 248152 | 252850 | E3 ubiquitin protein ligase RIE1 | AGI-06 | 60.660 | ||||||||||
| Fb0223 | - | - | - | - | - | - | SI240 | C_unshiu_00303:mRNA_13.1 | C_unshiu_00303 | 108935 | 110191 | E3 ubiquitin-protein ligase ATL6 | RP-08 | 15.967 | ||||||||||||||
| Bf0171 | - | - | - | - | - | - | SI381 | Ciclev10006006m | scaffold_9 | 4116356 | 4117315 | C_unshiu_00101:mRNA_25.1 | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
| Al0416 | OOthers | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00639:mRNA_12.1 | C_unshiu_00639 | 90698 | 99467 | Elongation factor 1-alpha | AGI-08 | 23.023 | JtR-07 | 60.405 | NAT-082 | 21.126 | ||||||
| Ov0018 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00082:mRNA_34.1 | C_unshiu_00082 | 267163 | 269630 | Elongation factor 1-alpha | ||||||||||||
| Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | Ciclev10004309m | scaffold_9 | 30513333 | 30517676 | C_unshiu_00003:mRNA_13.1 | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
| Af1416 | - | - | - | - | - | - | Ciclev10029140m | scaffold_8 | 3738607 | 3741747 | C_unshiu_00589:mRNA_10.1 | C_unshiu_00589 | 131180 | 134227 | Embryo defective 1273, putative isoform 1 | AGI-08 | 68.834 | |||||||||||
| Lp0226 | O | - | - | - | - | - | SI210 | Ciclev10027999m | scaffold_8 | 2831832 | 2837109 | C_unshiu_00152:mRNA_19.1 | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
| Cp0160 | - | - | - | - | - | - | Ciclev10019883m | scaffold_3 | 21940551 | 21944032 | C_unshiu_00272:mRNA_20.1 | C_unshiu_00272 | 187755 | 191248 | Endoglucanase | AGI-05 | 41.267 | |||||||||||
| Tf0213 | OOthers | O | - | - | - | - | - | Ciclev10030571m | scaffold_4 | 18839546 | 18848948 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
| Tf0251 | - | - | - | - | - | - | SI005 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | ||||||||||||||||
| Wy0011 | OOthers | O | - | - | - | - | - | SI091 | Ciclev10032364m | scaffold_4 | 24417602 | 24419019 | C_unshiu_00001:mRNA_226.1 | C_unshiu_00001 | 1429943 | 1431279 | Enoyl CoA hydratase/isomerase | AGI-07 | 86.288 | |||||||||
| Mf0052 | - | - | - | - | - | - | Ciclev10005897m | scaffold_9 | 28054214 | 28056032 | C_unshiu_01194:mRNA_11.1 | C_unshiu_01194 | 83573 | 84813 | Envelope glycoprotein | |||||||||||||
| Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | Ciclev10016009m | scaffold_2 | 33216839 | 33219042 | C_unshiu_00002:mRNA_211.1 | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
| If0219 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00318:mRNA_17.1 | C_unshiu_00318 | 110550 | 117056 | Esterase | JtR-05 | 13.922 | NAT-05 | 28.283 | ||||||||||||
| Wy0012 | O | - | - | - | - | O | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | KmG-032 | 11.250 | JtR-031 | 4.898 | NAT-03 | 11.970 | |||||||
| Af1414 | - | - | - | - | - | - | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | AGI-03 | 50.895 | |||||||||||
| Bf0158 | - | O | - | O | - | - | SI376 | Ciclev10021285m | scaffold_3 | 5253281 | 5254755 | C_unshiu_00795:mRNA_3.1 | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
| Tf0351 | - | - | - | - | - | - | SI122 | Ciclev10021622m | scaffold_3 | 43472094 | 43473220 | C_unshiu_00411:mRNA_17.1 | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
| Tf0027 | - | - | - | - | - | - | SI046 | Ciclev10026602m | scaffold_7 | 13911684 | 13912447 | C_unshiu_00792:mRNA_11.1 | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
| Gmom13 | - | - | - | - | - | - | Ciclev10005787m | scaffold_9 | 13223034 | 13225922 | C_unshiu_00620:mRNA_11.2 | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
| Tf0201 | O | - | - | - | - | - | SI195 | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
| Gmom23 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
| Gmom24 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
| Al0210 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10025724m | scaffold_7 | 6747139 | 6750382 | C_unshiu_00166:mRNA_28.1 | C_unshiu_00166 | 205256 | 208771 | Eukaryotic initiation factor 4A-10 | KmG-02 | 34.998 | JtR-02 | 15.126 | ||||||||
| Al0605 | OOthers | - | - | - | - | - | - | Ciclev10022151m | scaffold_3 | 41434064 | 41437122 | C_unshiu_00194:mRNA_5.1 | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
| Tf0226 | AAvailable marker | O | - | - | - | - | O | Ciclev10008836m | scaffold_1 | 526813 | 529150 | C_unshiu_00129:mRNA_32.1 | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
| Wy0030 | AAvailable marker | O | - | - | - | O | O | Ciclev10001854m | scaffold_5 | 36229310 | 36230518 | C_unshiu_00619:mRNA_10.1 | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
| Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
| Mf0017 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | AGI-05 | 44.674 | ||||||||||
| Bf0130 | - | - | - | - | - | - | SI063,SI188 | Ciclev10004858m | scaffold_9 | 26981498 | 26984277 | C_unshiu_00095:mRNA_24.1 | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
| Fb0219 | - | - | - | - | - | - | Ciclev10031436m | scaffold_4 | 21153791 | 21158006 | C_unshiu_00010:mRNA_101.1 | C_unshiu_00010 | 718703 | 722812 | F-box only protein 6 | AGI-03 | 46.274 | |||||||||||
| Al0408 | O | - | - | - | - | - | Ciclev10031487m | scaffold_4 | 23737757 | 23740513 | C_unshiu_00001:mRNA_109.1 | C_unshiu_00001 | 727392 | 729266 | F-box/kelch-repeat protein SKIP11 | AGI-07 | 75.917 | KmG-07 | 13.235 | JtR-07 | 1.788 | |||||||
| Tf0364 | AAvailable marker | O | - | - | - | O | O | Ciclev10011266m | scaffold_6 | 24606501 | 24612654 | C_unshiu_00135:mRNA_49.1 | C_unshiu_00135 | 338118 | 344273 | FACT complex subunit SSRP1 | AGI-04 | 37.102 | ||||||||||
| Wy0035 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10014857m | scaffold_2 | 31148849 | 31150616 | C_unshiu_00292:mRNA_13.1 | C_unshiu_00292 | 110620 | 112650 | FAD-binding Berberine family protein | AGI-06 | 36.863 | ||||||||||
| Fb0995 | OOthers | O | - | - | - | - | - | SI026 | Ciclev10024677m | scaffold_7 | 1180019 | 1202408 | C_unshiu_00544:mRNA_10.1 | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
| Cp0065 | O | - | - | - | - | - | Ciclev10002793m | scaffold_5 | 8435123 | 8435971 | C_unshiu_01044:mRNA_2.1 | C_unshiu_01044 | 7117 | 7963 | Ferredoxin | AGI-09 | 86.996 | |||||||||||
| Cp0703 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | AGI-08 | 43.089 | |||||||||||
| Al0018 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | RP-08 | 23.447 | |||||||||||
| Bf0189 | - | - | - | - | - | - | C_unshiu_00008:mRNA_66.1 | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
| Cp0741 | AAvailable marker | O | - | - | - | O | O | Ciclev10008230m | scaffold_1 | 3746864 | 3749903 | C_unshiu_00055:mRNA_22.1 | C_unshiu_00055 | 168281 | 172005 | Ferrochelatase | AGI-01 | 75.964 | ||||||||||
| Tf0058 | - | - | - | - | - | - | SI257 | Ciclev10009065m | scaffold_1 | 20885102 | 20889283 | C_unshiu_00395:mRNA_8.2 | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
| Af1405 | - | - | - | - | - | - | Ciclev10032481m | scaffold_4 | 24503838 | 24505365 | C_unshiu_00001:mRNA_238.1 | C_unshiu_00001 | 1513811 | 1515209 | FH interacting protein 1 | AGI-07 | 83.026 | |||||||||||
| Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10015934m | scaffold_2 | 35693249 | 35696515 | C_unshiu_00337:mRNA_13.1 | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
| Af1223 | - | - | - | - | - | - | Ciclev10009839m | scaffold_1 | 27111412 | 27114276 | C_unshiu_00347:mRNA_8.1 | C_unshiu_00347 | 66555 | 79401 | Flavin-binding kelch domain F box protein | AGI-09 | 97.668 | |||||||||||
| Af1207 | - | - | - | - | - | - | Ciclev10025335m | scaffold_7 | 15605065 | 15607345 | C_unshiu_00628:mRNA_20.1 | C_unshiu_00628 | 144683 | 146646 | Flavonoid 3'-monooxygenase | AGI-02 | 21.344 | |||||||||||
| Bf0147 | - | - | - | - | - | - | SI165 | Ciclev10014858m | scaffold_2 | 5975367 | 5977280 | C_unshiu_00260:mRNA_18.1 | C_unshiu_00260 | 124629 | 126502 | Flavonoid 3'-monooxygenase | RP-06.1 | 47.841 | ||||||||||
| Gn0004 | - | - | - | - | - | - | Ciclev10026028m | scaffold_7 | 6011523 | 6014015 | C_unshiu_00696:mRNA_14.1 | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
| Wy0034 | - | - | - | - | - | - | SI367 | Ciclev10026310m | scaffold_7 | 2299638 | 2302863 | C_unshiu_00025:mRNA_32.1 | C_unshiu_00025 | 269762 | 270443 | Flavoprotein wrbA | ||||||||||||
| Tf0344 | AAvailable marker | O | - | - | - | O | O | Ciclev10016433m | scaffold_2 | 34624236 | 34631123 | C_unshiu_00002:mRNA_17.1 | C_unshiu_00002 | 124392 | 131264 | Floral homeotic protein AGAMOUS | AGI-06 | 24.216 | ||||||||||
| Tf0145 | - | - | - | - | - | - | SI092 | Ciclev10022479m | scaffold_3 | 8486491 | 8488997 | C_unshiu_00154:mRNA_7.1 | C_unshiu_00154 | 49131 | 60112 | Floral homeotic protein APETALA 1 | ||||||||||||
| Tf0280 | - | - | - | - | - | - | SI158,SI200 | Ciclev10025566m | scaffold_7 | 3429964 | 3433239 | C_unshiu_00301:mRNA_24.3 | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
| Al0514 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | KmG-04 | 32.217 | ||||||||||
| If0210 | - | - | - | - | - | - | SI042 | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
| Al0635 | AAvailable marker | - | - | - | - | O | O | Ciclev10015354m | scaffold_2 | 26435540 | 26438838 | C_unshiu_00197:mRNA_27.1 | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
| Cp2262 | AAvailable marker | - | - | - | - | - | O | Ciclev10026121m | scaffold_7 | 1870933 | 1874304 | C_unshiu_00289:mRNA_20.1 | C_unshiu_00289 | 113542 | 116894 | Galactose mutarotase-like superfamily protein | ||||||||||||
| Tf0264 | AAvailable marker | O | - | - | - | O | O | Ciclev10015873m | scaffold_2 | 248256 | 250675 | C_unshiu_00109:mRNA_29.1 | C_unshiu_00109 | 175776 | 179005 | GAN | AGI-06 | 103.728 | ||||||||||
| Tf0454 | AAvailable marker | O | - | - | - | O | O | Ciclev10027306m | scaffold_7 | 16108723 | 16113463 | C_unshiu_00371:mRNA_10.1 | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
| Tf0106 | - | - | - | - | - | - | Ciclev10006161m | scaffold_9 | 1128046 | 1129318 | C_unshiu_00007:mRNA_6.1 | C_unshiu_00007 | 49599 | 50702 | GATA transcription factor 15 | AGI-03 | 7.674 | |||||||||||
| Fb0103 | OOthers | O | - | - | - | - | - | SI155 | Ciclev10008255m | scaffold_1 | 22758712 | 22761740 | C_unshiu_00103:mRNA_27.1 | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
| Wy0041 | - | - | - | - | - | - | Ciclev10025903m | scaffold_7 | 1295839 | 1297378 | C_unshiu_00218:mRNA_18.1 | C_unshiu_00218 | 93074 | 94183 | GDP-mannose 4,6 dehydratase 2 | AGI-02 | 75.406 | |||||||||||
| Wy0045 | Wy0045.k | - | - | - | - | - | - | Ciclev10028268m | scaffold_8 | 9564698 | 9566326 | C_unshiu_02764:mRNA_1.1 | C_unshiu_02764 | 1529 | 2654 | Geraniol 10-hydroxylase-like protein | AGI-08 | 56.724 | ||||||||||
| Af1111 | - | - | - | - | - | - | Ciclev10015086m | scaffold_2 | 23021193 | 23023457 | C_unshiu_00172:mRNA_31.1 | C_unshiu_00172 | 270783 | 273047 | Glucan endo-1,3-beta-glucosidase 13 | AGI-06 | 83.445 | |||||||||||
| If0005 | OOthers | - | - | - | - | - | - | Ciclev10032438m | scaffold_4 | 20629463 | 20633356 | C_unshiu_00015:mRNA_81.1 | C_unshiu_00015 | 667011 | 671011 | Glucosamine/galactosamine-6-phosphate isomerase family protein | JtR-07 | 25.458 | NAT-07 | 15.764 | ||||||||
| Cp0052 | OOthers | O | - | - | - | - | - | C_unshiu_01597:mRNA_11.1 | C_unshiu_01597 | 29471 | 42354 | Glucose-6-phosphate dehydrogenase 4 | AGI-08 | 96.035 | ||||||||||||||
| Bf0200 | OOthers | - | - | - | - | - | - | SI335 | Ciclev10014367m | scaffold_2 | 29022433 | 29030724 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
| Af1312 | - | - | - | - | - | - | Ciclev10014367m | scaffold_2 | 29022433 | 29030537 | C_unshiu_00022:mRNA_44.1 | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
| Af1003 | O | - | - | - | - | - | Ciclev10001093m | scaffold_5 | 15605852 | 15610028 | C_unshiu_00533:mRNA_20.1 | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
| Af1149 | - | - | - | - | - | - | Ciclev10025360m | scaffold_7 | 12985954 | 12989228 | C_unshiu_02261:mRNA_2.1 | C_unshiu_02261 | 19156 | 21966 | Glycerol kinase | AGI-05 | 21.630 | |||||||||||
| Af1087 | O | - | - | - | - | - | Ciclev10019689m | scaffold_3 | 24796351 | 24800588 | C_unshiu_00286:mRNA_17.1 | C_unshiu_00286 | 132648 | 135466 | Glycine hydroxymethyltransferase | AGI-05 | 41.306 | |||||||||||
| Af1586 | - | - | - | - | - | - | Ciclev10005733m | scaffold_9 | 23119502 | 23122347 | C_unshiu_00148:mRNA_17.1 | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
| Vt0029 | - | - | - | - | - | - | Ciclev10031975m | scaffold_4 | 2451345 | 2454325 | C_unshiu_00979:mRNA_17.1 | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
| Bf0036 | AAvailable marker | O | O | - | O | O | O | Ciclev10008751m | scaffold_1 | 22840947 | 22844111 | C_unshiu_00103:mRNA_45.1 | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
| Bf0020 | - | - | - | - | - | - | Ciclev10005107m | scaffold_9 | 25185200 | 25188839 | C_unshiu_00119:mRNA_25.1 | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
| Tf0071 | - | - | - | - | - | - | SI084,SI146 | Ciclev10022102m | scaffold_3 | 26610747 | 26612959 | C_unshiu_00167:mRNA_6.1 | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
| Fb0207 | - | - | - | - | - | - | Ciclev10006449m | scaffold_9 | 3771162 | 3771725 | C_unshiu_00254:mRNA_35.1 | C_unshiu_00254 | 237120 | 239518 | Heat shock 22 kDa protein | RP-03 | 21.444 | |||||||||||
| Tf0263 | - | - | - | - | - | - | SI013 | Ciclev10008768m | scaffold_1 | 6358030 | 6359568 | C_unshiu_00075:mRNA_22.1 | C_unshiu_00075 | 227733 | 229211 | Heat shock transcription factor A7a1 | ||||||||||||
| Tf0068 | - | - | - | - | - | - | SI106 | Ciclev10020724m | scaffold_3 | 44141305 | 44144453 | C_unshiu_00217:mRNA_25.1 | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
| Tf0072 | - | - | - | - | - | - | Ciclev10005403m | scaffold_9 | 28757274 | 28759075 | C_unshiu_00045:mRNA_48.1 | C_unshiu_00045 | 372168 | 373811 | Heat stress transcription factor B-4 | AGI-03 | 35.962 | |||||||||||
| Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | Ciclev10021287m | scaffold_3 | 7047024 | 7049430 | C_unshiu_00425:mRNA_7.1 | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
| Af1498 | - | - | - | - | - | - | Ciclev10006723m | scaffold_9 | 6766349 | 6768025 | C_unshiu_00307:mRNA_26.2 | C_unshiu_00307 | 212314 | 218407 | Heterogeneous nuclear ribonucleoprotein 1 | AGI-03 | 46.274 | |||||||||||
| Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
| Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
| Vt0015 | - | - | - | - | - | - | Ciclev10025952m | scaffold_7 | 2441452 | 2443391 | C_unshiu_00025:mRNA_49.1 | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
| Al0525 | OOthers | O | - | - | - | - | - | Ciclev10026706m | scaffold_7 | 252320 | 254023 | C_unshiu_00312:mRNA_20.2 | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
| Tf0343 | AtAvailable marker | O | - | - | - | O | O | Ciclev10016587m | scaffold_2 | 29204680 | 29206501 | C_unshiu_00022:mRNA_67.1 | C_unshiu_00022 | 489282 | 490950 | High mobility group B protein 7 | AGI-06 | 44.393 | ||||||||||
| Mf0041 | AAvailable marker | - | - | - | - | O | O | Ciclev10022012m | scaffold_3 | 45076821 | 45080633 | C_unshiu_00069:mRNA_16.1 | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
| Af1345 | - | - | - | - | - | - | Ciclev10013023m | scaffold_6 | 13082313 | 13084012 | C_unshiu_01022:mRNA_2.1 | C_unshiu_01022 | 8566 | 10161 | Histone H2A | AGI-08 | 93.624 | |||||||||||
| Tf0232 | - | - | - | - | - | - | SI258,SI261 | Ciclev10001105m | scaffold_5 | 37066208 | 37070717 | C_unshiu_00773:mRNA_3.1 | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
| Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | Ciclev10024695m | scaffold_7 | 2501520 | 2509737 | C_unshiu_02417:mRNA_1.1 | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
| Fb1916 | - | - | - | - | - | - | SI336 | Ciclev10016275m | scaffold_2 | 12043969 | 12046230 | C_unshiu_00026:mRNA_12.1 | C_unshiu_00026 | 110679 | 112686 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 | RP-06.1 | 24.027 | ||||||||||
| Tf0020 | - | - | - | - | - | - | SI154 | Ciclev10026414m | scaffold_7 | 2289455 | 2291216 | C_unshiu_00025:mRNA_31.1 | C_unshiu_00025 | 258446 | 260200 | Homeobox leucine zipper protein | AGI-02 | 71.294 | ||||||||||
| Tf0375 | - | - | - | - | - | - | Ciclev10022365m | scaffold_3 | 13034654 | 13036082 | C_unshiu_00020:mRNA_62.1 | C_unshiu_00020 | 527751 | 528816 | Homeobox leucine zipper protein | AGI-05 | 40.558 | |||||||||||
| Tf0045 | - | - | - | - | - | - | SI303,SI321 | Ciclev10032837m | scaffold_4 | 23496020 | 23497466 | C_unshiu_00001:mRNA_74.1 | C_unshiu_00001 | 490607 | 491890 | Homeobox transcription factor | AGI-07 | 74.573 | ||||||||||
| Tf0265 | - | - | - | - | - | - | SI197 | Ciclev10019232m | scaffold_3 | 49318106 | 49324231 | C_unshiu_00018:mRNA_126.1 | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
| Tf0363 | - | - | - | - | - | - | SI002,SI096 | Ciclev10019714m | scaffold_3 | 49318106 | 49324231 | C_unshiu_00018:mRNA_126.1 | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
| Wy0018 | AAvailable marker | - | - | - | - | O | O | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
| Tf0301 | - | - | - | - | - | - | SI182 | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | ||||||||||||
| Gn0041 | AAvailable marker | - | - | - | - | - | O | C_unshiu_00123:mRNA_16.1 | C_unshiu_00123 | 116817 | 119061 | Homeobox-leucine zipper protein HAT5 | KmG-05S | 9.772 | JtR-05 | 28.396 | ||||||||||||
| Tf0198 | AAvailable marker | O | - | - | - | - | O | Ciclev10032275m | scaffold_4 | 23695766 | 23697703 | C_unshiu_00001:mRNA_105.2 | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | ||||||||||||
| Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | Ciclev10032275m | scaffold_4 | 23695766 | 23697703 | C_unshiu_00001:mRNA_105.2 | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
| Tf0203 | - | - | - | - | - | - | SI121 | Ciclev10014039m | scaffold_2 | 10459593 | 10472483 | C_unshiu_00403:mRNA_13.1 | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
| Tf0075 | - | - | - | - | - | - | SI059,SI248 | Ciclev10010972m | scaffold_6 | 19142307 | 19156510 | C_unshiu_00089:mRNA_11.1 | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
| Cp0603 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10028998m | scaffold_8 | 2349655 | 2354496 | C_unshiu_00363:mRNA_34.1 | C_unshiu_00363 | 217631 | 222409 | Hop-interacting protein THI043 | AGI-08 | 75.684 | ||||||||||
| Ov0404 | AAvailable marker | - | - | - | - | - | O | Ciclev10002415m | scaffold_5 | 29768091 | 29769281 | C_unshiu_00731:mRNA_6.3 | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
| Wy0026 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10010857m | scaffold_1 | 28321342 | 28323314 | C_unshiu_02224:mRNA_5.1 | C_unshiu_02224 | 30176 | 31684 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AGI-01 | 35.518 | ||||||||||
| Af1509 | - | - | - | - | - | - | Ciclev10032314m | scaffold_4 | 23564251 | 23568956 | C_unshiu_00001:mRNA_83.3 | C_unshiu_00001 | 555659 | 560336 | Hypersensitive-induced response protein 1 | AGI-07 | 73.796 | |||||||||||
| Tf0166 | - | - | - | - | - | - | SI156 | Ciclev10000524m | scaffold_5 | 19682579 | 19686163 | C_unshiu_00050:mRNA_13.1 | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
| Fb0357 | O | - | - | - | - | - | SI384 | Ciclev10001633m | scaffold_5 | 40550222 | 40554434 | C_unshiu_00889:mRNA_6.1 | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
| Bf0183 | O | - | - | - | - | - | SI308 | Ciclev10005208m | scaffold_9 | 5254416 | 5256826 | C_unshiu_01106:mRNA_9.1 | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
| Fb0365 | O | - | - | - | - | - | SI036,SI320 | Ciclev10026391m | scaffold_7 | 20872462 | 20874659 | C_unshiu_00098:mRNA_41.1 | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
| Af0004 | O | - | - | - | - | - | Ciclev10025125m | scaffold_7 | 8447414 | 8453714 | C_unshiu_00290:mRNA_10.1 | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
| Tf0173 | O | - | - | - | - | - | Ciclev10015413m | scaffold_2 | 26097343 | 26099320 | C_unshiu_00259:mRNA_35.1 | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
| Tf0176 | - | - | - | - | - | - | Ciclev10008476m | scaffold_1 | 385469 | 388179 | C_unshiu_00003:mRNA_163.1 | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | RP-01 | ||||||||||||
| Tf0177 | - | - | - | - | - | - | SI133 | Ciclev10008476m | scaffold_1 | 385469 | 388179 | C_unshiu_00003:mRNA_163.1 | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | ||||||||||||
| Tf0455 | OOthers | O | - | - | - | - | - | Ciclev10017004m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
| Af0015 | - | - | - | - | - | - | Ciclev10019449m | scaffold_3 | 44021779 | 44027536 | C_unshiu_00217:mRNA_10.1 | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
| Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | Ciclev10000046m | scaffold_5 | 41184180 | 41190033 | C_unshiu_00127:mRNA_46.1 | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
| Af0016 | - | - | - | - | - | - | Ciclev10022861m | scaffold_3 | 25074163 | 25075916 | C_unshiu_00117:mRNA_7.1 | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Bf0221 | - | - | - | - | - | - | Ciclev10005970m | scaffold_9 | 24195180 | 24198282 | C_unshiu_00132:mRNA_22.1 | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
| Al0240 | AAvailable marker | - | - | - | - | O | O | Ciclev10028497m | scaffold_8 | 8033465 | 8038415 | C_unshiu_00682:mRNA_9.1 | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
| Ov0324 | AAvailable marker | - | - | - | - | - | O | Ciclev10030198m | scaffold_8 | 22575845 | 22578398 | C_unshiu_01619:mRNA_6.1 | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
| Tf0196 | - | - | - | - | - | - | Ciclev10025815m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
| Af1011 | O | - | - | - | - | - | Ciclev10013781m | scaffold_6 | 25306829 | 25315243 | C_unshiu_00009:mRNA_53.1 | C_unshiu_00009 | 289462 | 299397 | Hypothetical protein | RP-04 | 60.491 | |||||||||||
| Fb2130 | - | - | - | - | - | - | SI069,SI117 | Ciclev10030030m | scaffold_8 | 24341129 | 24344795 | C_unshiu_00021:mRNA_68.1 | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
| Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | Ciclev10026412m | scaffold_7 | 815904 | 817239 | C_unshiu_00353:mRNA_13.1 | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
| Vt0003 | - | - | - | - | - | - | Ciclev10027667m | scaffold_8 | 8153660 | 8174407 | C_unshiu_00616:mRNA_3.1 | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Bf0413 | - | - | - | - | - | - | C_unshiu_00293:mRNA_16.1 | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
| Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | Ciclev10028631m | scaffold_8 | 24315720 | 24317671 | C_unshiu_00021:mRNA_65.1 | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
| Al0309 | AAvailable marker | O | - | - | - | - | O | Ciclev10022019m | scaffold_3 | 44900059 | 44900865 | C_unshiu_00069:mRNA_47.1 | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
| Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10023016m | scaffold_3 | 42954362 | 42955051 | C_unshiu_00152:mRNA_28.1 | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
| Ov0427 | - | - | - | - | - | - | Ciclev10009427m | scaffold_1 | 2156679 | 2158871 | C_unshiu_00553:mRNA_14.1 | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
| Bf1204 | - | - | - | - | - | - | SI364 | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
| Bf1207 | - | - | - | - | - | - | Ciclev10010835m | scaffold_1 | 22912695 | 22913798 | C_unshiu_00103:mRNA_59.1 | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
| Gn0002 | - | - | - | - | - | - | Ciclev10032697m | scaffold_4 | 3335945 | 3338632 | C_unshiu_00465:mRNA_12.1 | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
| Ov0502 | - | - | - | - | - | - | C_unshiu_01254:mRNA_7.1 | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
| Vt0028 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
| Af1321 | - | - | - | - | - | - | Ciclev10009751m | scaffold_1 | 16371168 | 16375666 | C_unshiu_00108:mRNA_25.1 | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
| Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10029315m | scaffold_8 | 20424287 | 20425903 | C_unshiu_00320:mRNA_1.2 | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
| Af1052 | O | - | - | - | - | - | Ciclev10004444m | scaffold_9 | 12808154 | 12820311 | C_unshiu_00508:mRNA_9.1 | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Cp1523 | AAvailable marker | - | - | - | - | O | O | Ciclev10005519m | scaffold_9 | 1356758 | 1359310 | C_unshiu_01431:mRNA_7.1 | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
| Ov0513 | OOthers | O | - | - | - | - | - | Ciclev10011622m | scaffold_6 | 25349417 | 25351949 | C_unshiu_00009:mRNA_59.1 | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
| Al0331 | AAvailable marker | - | - | - | - | - | O | Ciclev10033190m | scaffold_4 | 8406632 | 8407188 | C_unshiu_00111:mRNA_9.1 | C_unshiu_00111 | 83531 | 84087 | Hypothetical protein | KmG-09 | 9.593 | JtR-07 | 52.611 | RP-07 | 19.079 | ||||||
| Tf0245 | - | - | - | - | - | - | SI021 | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | ||||||||||||
| Al0401 | OOthers | O | - | - | - | - | - | Ciclev10025346m | scaffold_7 | 13180567 | 13191638 | C_unshiu_01698:mRNA_6.1 | C_unshiu_01698 | 39336 | 40206 | Hypothetical protein | KmG-02 | 26.204 | JtR-02 | -6.043 | NAT-02S | 22.960 | ||||||
| Tf0254 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10010885m | scaffold_6 | 23916876 | 23939827 | C_unshiu_00253:mRNA_3.1 | C_unshiu_00253 | 14647 | 20586 | Hypothetical protein | AGI-04 | 38.226 | ||||||||||
| Cp0047 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10021599m | scaffold_3 | 40918148 | 40922656 | C_unshiu_00735:mRNA_16.1 | C_unshiu_00735 | 120088 | 124350 | Hypothetical protein | AGI-05 | 48.590 | ||||||||||
| Lp0220 | O | - | - | - | - | - | Ciclev10000749m | scaffold_5 | 39221210 | 39227401 | C_unshiu_00495:mRNA_21.1 | C_unshiu_00495 | 125230 | 136174 | Hypothetical protein | AGI-07 | 14.968 | |||||||||||
| Af1084 | - | - | - | - | - | - | Ciclev10008467m | scaffold_1 | 25716862 | 25720071 | C_unshiu_00066:mRNA_57.1 | C_unshiu_00066 | 369928 | 382143 | Hypothetical protein | AGI-01 | 24.643 | |||||||||||
| Al0419 | OOthers | O | - | - | - | - | - | Ciclev10005894m | scaffold_9 | 2452853 | 2455181 | C_unshiu_00394:mRNA_25.1 | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
| Tf0003.2 | OOthers | O | - | - | - | - | - | Ciclev10002471m | scaffold_5 | 37808878 | 37811097 | C_unshiu_00238:mRNA_14.1 | C_unshiu_00238 | 116142 | 129209 | Hypothetical protein | AGI-09 | 44.054 | ||||||||||
| Af1362 | - | - | - | - | - | - | Ciclev10027931m | scaffold_8 | 2888992 | 2895645 | C_unshiu_00152:mRNA_9.1 | C_unshiu_00152 | 72564 | 86513 | Hypothetical protein | AGI-08 | 80.366 | |||||||||||
| Gn0058 | - | - | - | - | - | - | Ciclev10029531m | scaffold_8 | 11297754 | 11299510 | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-08 | 59.107 | |||||||||||
| Tf0011.2 | OOthers | O | - | - | - | - | - | Ciclev10018614m | scaffold_3 | 11078798 | 11089090 | C_unshiu_02207:mRNA_3.1 | C_unshiu_02207 | 9802 | 19021 | Hypothetical protein | AGI-05 | 42.191 | ||||||||||
| Wy0039 | AAvailable marker | - | - | - | - | O | O | Ciclev10028965m | scaffold_8 | 18824262 | 18825514 | C_unshiu_00459:mRNA_4.1 | C_unshiu_00459 | 34475 | 34918 | Hypothetical protein | AGI-08 | 45.276 | JtR-08 | 16.276 | ||||||||
| Wy0040 | AAvailable marker | O | - | - | - | - | O | Ciclev10011622m | scaffold_6 | 25349417 | 25351949 | C_unshiu_00001:mRNA_217.1 | C_unshiu_00001 | 1378378 | 1380557 | Hypothetical protein | KmG-04 | 12.855 | ||||||||||
| Wy0044.3 | - | - | - | - | - | - | Ciclev10020328m | scaffold_3 | 49621665 | 49623875 | C_unshiu_00126:mRNA_45.1 | C_unshiu_00126 | 300225 | 314275 | Hypothetical protein | RP-05 | 49.102 | |||||||||||
| Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | Ciclev10031723m | scaffold_4 | 115362 | 118025 | C_unshiu_02038:mRNA_4.1 | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
| Al0602 | AAvailable marker | - | - | - | - | - | O | Ciclev10017248m | scaffold_2 | 27141148 | 27141869 | C_unshiu_00017:mRNA_42.1 | C_unshiu_00017 | 304994 | 305523 | Hypothetical protein | KmG-06 | 18.450 | JtR-06S | 3.805 | ||||||||
| Af1398 | - | - | - | - | - | - | Ciclev10030393m | scaffold_8 | 7899376 | 7902959 | C_unshiu_00887:mRNA_6.1 | C_unshiu_00887 | 49120 | 57547 | Hypothetical protein | AGI-08 | 57.551 | |||||||||||
| Mf0033 | AAvailable marker | - | - | - | - | O | O | Ciclev10010044m | scaffold_1 | 6227617 | 6228389 | C_unshiu_00075:mRNA_11.1 | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
| Tf0042.2 | AAvailable marker | O | - | - | - | - | O | Ciclev10016820m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | ||||||||||||
| Cp0278 | - | - | - | - | - | - | Ciclev10022561m | scaffold_3 | 24750794 | 24752907 | C_unshiu_00286:mRNA_8.1 | C_unshiu_00286 | 73068 | 81236 | Hypothetical protein | AGI-04 | 122.142 | |||||||||||
| Tf0054 | O | - | - | - | - | - | SI238 | Ciclev10000100m | scaffold_5 | 43108998 | 43114214 | C_unshiu_01422:mRNA_2.1 | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
| Al0620 | OOthers | - | - | - | - | - | - | Ciclev10025816m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | KmG-02 | 36.964 | JtR-02 | 17.013 | ||||||||
| Cp0321 | AAvailable marker | - | - | - | - | - | O | Ciclev10026722m | scaffold_7 | 8898626 | 8899984 | C_unshiu_00221:mRNA_33.1 | C_unshiu_00221 | 211111 | 214358 | Hypothetical protein | ||||||||||||
| Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10025875m | scaffold_7 | 4575503 | 4577125 | C_unshiu_00656:mRNA_8.1 | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
| Af1685 | - | - | - | - | - | - | Ciclev10023782m | scaffold_3 | 40086985 | 40089114 | C_unshiu_00335:mRNA_9.1 | C_unshiu_00335 | 76164 | 77436 | Hypothetical protein | AGI-05 | 56.481 | |||||||||||
| Mf0055 | DDominant marker | - | - | - | - | O | O | Ciclev10022212m | scaffold_3 | 45551345 | 45552620 | C_unshiu_01674:mRNA_4.1 | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
| Af1690 | - | - | - | - | - | - | Ciclev10032651m | scaffold_4 | 23923757 | 23925178 | C_unshiu_00001:mRNA_137.1 | C_unshiu_00001 | 920379 | 924128 | Hypothetical protein | AGI-07 | 77.752 | |||||||||||
| Mf0060 | - | - | - | - | - | - | C_unshiu_00715:mRNA_6.1 | C_unshiu_00715 | 29601 | 30242 | Hypothetical protein | JtR-07 | 56.497 | |||||||||||||||
| If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | C_unshiu_00046:mRNA_66.1 | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
| If0207 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_01172:mRNA_2.1 | C_unshiu_01172 | 28413 | 28712 | Hypothetical protein | AGI-07 | 45.716 | ||||||||||||||
| Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | Ciclev10017346m | scaffold_2 | 3067337 | 3069249 | C_unshiu_00246:mRNA_8.1 | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
| If0216 | OOthers | O | - | - | - | - | - | SI174 | Ciclev10015257m | scaffold_2 | 12876952 | 12881843 | C_unshiu_01838:mRNA_2.1 | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
| Mf0072 | AAvailable marker | - | - | - | - | O | O | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
| Mf0073 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_00069:mRNA_5.1 | C_unshiu_00069 | 25589 | 28375 | Hypothetical protein | JtR-05 | 38.749 | NAT-05 | 44.567 | ||||||||||||
| If0220 | AAvailable marker | - | - | - | - | - | O | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_15.1 | C_unshiu_00457 | 99488 | 99913 | Hypothetical protein | ||||||||||||
| Cp2263 | AAvailable marker | - | - | - | - | O | O | Ciclev10026034m | scaffold_7 | 2586384 | 2588513 | C_unshiu_00025:mRNA_69.1 | C_unshiu_00025 | 530588 | 532071 | Hypothetical protein | AGI-02 | 70.082 | ||||||||||
| Af1453 | - | - | - | - | - | - | Ciclev10023068m | scaffold_3 | 4663211 | 4664667 | C_unshiu_01589:mRNA_7.1 | C_unshiu_01589 | 29063 | 37936 | Hypothetical protein | AGI-05 | 27.956 | |||||||||||
| Ks9013 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | KmG-07 | 45.284 | JtR-07 | 39.119 | |||||||||
| Tf0370 | - | - | - | - | - | - | Ciclev10019820m | scaffold_3 | 47121093 | 47124518 | C_unshiu_00023:mRNA_20.1 | C_unshiu_00023 | 123134 | 131389 | Hypothetical protein | AGI-05 | 69.117 | |||||||||||
| Tf0371 | - | - | - | - | - | - | Ciclev10002081m | scaffold_5 | 20377552 | 20384333 | C_unshiu_00913:mRNA_4.1 | C_unshiu_00913 | 37450 | 43326 | Hypothetical protein | AGI-09 | 102.280 | |||||||||||
| Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | Ciclev10018252m | scaffold_2 | 27774863 | 27778271 | C_unshiu_00745:mRNA_6.1 | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
| Af1462 | - | - | - | - | - | - | Ciclev10012884m | scaffold_6 | 24274031 | 24276658 | C_unshiu_00133:mRNA_50.1 | C_unshiu_00133 | 274230 | 284897 | Hypothetical protein | AGI-04 | 37.527 | |||||||||||
| Cp0634 | - | - | - | - | - | - | Ciclev10031740m | scaffold_4 | 15660463 | 15665838 | C_unshiu_00824:mRNA_8.1 | C_unshiu_00824 | 96745 | 119992 | Hypothetical protein | AGI-07 | 32.589 | |||||||||||
| Al0001 | - | - | - | - | - | - | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-03 | 62.228 | JtR-031 | 17.616 | |||||||||||||
| Bf0101 | - | - | - | - | - | - | Ciclev10003680m | scaffold_5 | 32917826 | 32924241 | C_unshiu_00229:mRNA_13.1 | C_unshiu_00229 | 57438 | 62744 | Hypothetical protein | NAT-09 | 50.353 | |||||||||||
| Tf0119 | AAvailable marker | - | - | - | - | O | O | Ciclev10014416m | scaffold_2 | 35564238 | 35570619 | C_unshiu_01497:mRNA_5.1 | C_unshiu_01497 | 20297 | 33375 | Hypothetical protein | AGI-06 | 19.002 | ||||||||||
| Fb0133 | - | - | - | - | - | - | C_unshiu_00195:mRNA_19.1 | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
| Tf0122 | - | - | - | - | - | - | Ciclev10020009m | scaffold_3 | 24620623 | 24627357 | C_unshiu_02869:mRNA_1.1 | C_unshiu_02869 | 1885 | 10204 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | Ciclev10019665m | scaffold_3 | 50861813 | 50866146 | C_unshiu_00206:mRNA_42.1 | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
| Fb0180 | - | - | - | - | - | - | SI209 | Ciclev10005370m | scaffold_9 | 27734482 | 27736035 | C_unshiu_00252:mRNA_1.1 | C_unshiu_00252 | 12109 | 13626 | Hypothetical protein | RP-03 | 56.919 | ||||||||||
| Bf0128 | O | - | - | - | - | - | Ciclev10025298m | scaffold_7 | 3323269 | 3331038 | C_unshiu_00051:mRNA_2.2 | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
| Fb0237 | - | - | - | - | - | - | Ciclev10007227m | scaffold_1 | 23487200 | 23497316 | C_unshiu_00338:mRNA_20.1 | C_unshiu_00338 | 134033 | 144369 | Hypothetical protein | AGI-01 | 28.325 | |||||||||||
| Fb0246 | - | - | - | - | - | - | Ciclev10029680m | scaffold_8 | 2403492 | 2406922 | C_unshiu_00363:mRNA_27.1 | C_unshiu_00363 | 170901 | 174318 | Hypothetical protein | AGI-08 | 80.078 | |||||||||||
| Cp0933 | OOthers | - | - | - | - | - | - | Ciclev10019734m | scaffold_3 | 49821906 | 49825730 | C_unshiu_00014:mRNA_26.1 | C_unshiu_00014 | 159299 | 162719 | Hypothetical protein | AGI-03 | 47.283 | ||||||||||
| Ov0116 | - | - | - | - | - | - | Ciclev10032931m | scaffold_4 | 3193875 | 3196468 | C_unshiu_00342:mRNA_22.1 | C_unshiu_00342 | 154980 | 164222 | Hypothetical protein | KmG-02 | 53.208 | JtR-02 | 27.051 | RP-02.2 | 5.192 | |||||||
| Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | Ciclev10010926m | scaffold_6 | 19105139 | 19113780 | C_unshiu_00089:mRNA_17.1 | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
| Fb0293 | - | - | - | - | - | - | SI198,SI374 | C_unshiu_00152:mRNA_37.1 | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
| Cp0974 | - | - | - | - | - | - | Ciclev10011578m | scaffold_6 | 8029488 | 8035109 | C_unshiu_00711:mRNA_6.1 | C_unshiu_00711 | 128510 | 138133 | Hypothetical protein | AGI-04 | 107.018 | |||||||||||
| Fb0296 | - | - | - | - | - | - | Ciclev10014378m | scaffold_2 | 22689124 | 22695586 | C_unshiu_01495:mRNA_8.1 | C_unshiu_01495 | 60336 | 62557 | Hypothetical protein | RP-06.1 | 10.382 | |||||||||||
| Al0209 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | KmG-01 | 37.230 | JtR-01S | 88.382 | ||||||||
| Cp0719 | - | - | - | - | - | - | Ciclev10028417m | scaffold_8 | 23257043 | 23262019 | C_unshiu_02393:mRNA_2.1 | C_unshiu_02393 | 18637 | 23537 | Inner membrane protein ALBINO3 | AGI-08 | 12.793 | |||||||||||
| Ks9001 | - | - | - | - | - | - | Ciclev10008207m | scaffold_1 | 24548109 | 24552107 | C_unshiu_00047:mRNA_72.1 | C_unshiu_00047 | 475125 | 488565 | Inter-alpha-trypsin inhibitor heavy chain-related isoform 1 | AGI-01 | 27.192 | JtR-01S | 61.287 | |||||||||
| Al0639 | AAvailable marker | O | - | - | - | O | O | Ciclev10001091m | scaffold_5 | 41703787 | 41708779 | C_unshiu_00009:mRNA_141.1 | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
| Cp1044 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10015927m | scaffold_2 | 4354278 | 4358516 | C_unshiu_00062:mRNA_38.1 | C_unshiu_00062 | 326045 | 332995 | Iron-sulfur cluster formation ABC transporter ATP-binding subunit | AGI-07 | 39.420 | ||||||||||
| Bf0218 | O | - | - | - | - | - | SI232 | Ciclev10000452m | scaffold_5 | 36036990 | 36048487 | C_unshiu_00406:mRNA_20.1 | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
| Cp0975 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10012312m | scaffold_6 | 7924189 | 7928192 | C_unshiu_00631:mRNA_15.1 | C_unshiu_00631 | 149702 | 153660 | Isopentenyl pyrophosphate isomerase | AGI-07 | 29.152 | ||||||||||
| Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | Ciclev10015483m | scaffold_2 | 35212691 | 35214865 | C_unshiu_00048:mRNA_50.1 | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
| Al0630 | AAvailable marker | O | - | - | - | - | O | Ciclev10008681m | scaffold_1 | 487184 | 489198 | C_unshiu_00129:mRNA_38.1 | C_unshiu_00129 | 342865 | 344872 | Kelch repeat-containing F-box family protein | RP-01 | 1.092 | ||||||||||
| Cp2190 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028681m | scaffold_8 | 24416582 | 24418982 | C_unshiu_00021:mRNA_82.1 | C_unshiu_00021 | 526890 | 529253 | Kinase PfkB | AGI-08 | 13.780 | ||||||||||
| Ov0311 | - | - | - | - | - | - | Ciclev10022001m | scaffold_3 | 18341166 | 18342395 | C_unshiu_00417:mRNA_9.1 | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
| Af1556 | - | - | - | - | - | - | Ciclev10026643m | scaffold_7 | 11107041 | 11109191 | C_unshiu_01501:mRNA_6.1 | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
| Ov0310 | - | - | - | - | - | - | Ciclev10023404m | scaffold_3 | 48463395 | 48465325 | C_unshiu_00026:mRNA_46.1 | C_unshiu_00026 | 334715 | 336716 | Lanatoside 15-O-acetylesterase | KmG-01 | 21.291 | JtR-01S | 61.287 | |||||||||
| Mf0047 | DDominant marker | - | - | - | - | - | - | Ciclev10006308m | scaffold_9 | 1685407 | 1687081 | C_unshiu_00036:mRNA_24.2 | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
| Tf0081 | - | - | - | - | - | - | SI038,SI324 | Ciclev10021980m | scaffold_3 | 38214468 | 38216861 | C_unshiu_00575:mRNA_8.1 | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
| Vt0032 | O | - | - | - | - | - | SI024 | Ciclev10024737m | scaffold_7 | 17901487 | 17905433 | C_unshiu_00382:mRNA_15.1 | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
| Cp0748 | - | - | - | - | - | - | Ciclev10022288m | scaffold_3 | 34673451 | 34674900 | C_unshiu_00669:mRNA_14.1 | C_unshiu_00669 | 103814 | 104779 | Light-dependent short hypocotyls protein | AGI-01 | 33.562 | |||||||||||
| Cp1268 | - | - | - | - | - | - | Ciclev10021861m | scaffold_3 | 7327436 | 7329167 | C_unshiu_00199:mRNA_13.1 | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
| Cp1533 | - | - | - | - | - | - | Ciclev10021868m | scaffold_3 | 4831751 | 4834270 | C_unshiu_00768:mRNA_14.1 | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
| Edw002 | - | - | - | - | - | - | Ciclev10029316m | scaffold_8 | 2012329 | 2014782 | C_unshiu_00024:mRNA_48.2 | C_unshiu_00024 | 335678 | 337129 | LIM transcription factor | AGI-08 | 77.720 | |||||||||||
| Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | C_unshiu_00564:mRNA_19.1 | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
| Al0517 | AAvailable marker | - | - | - | - | O | O | Ciclev10028293m | scaffold_8 | 2572439 | 2574295 | C_unshiu_00363:mRNA_1.1 | C_unshiu_00363 | 5892 | 7583 | Limonoid glucosyltransferase | AGI-08 | 74.016 | JtR-08 | 15.435 | ||||||||
| Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028247m | scaffold_8 | 2561845 | 2563605 | C_unshiu_00363:mRNA_2.1 | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
| Cp0039 | O | - | - | - | - | - | Ciclev10032929m | scaffold_4 | 1549679 | 1551396 | C_unshiu_00012:mRNA_98.1 | C_unshiu_00012 | 722822 | 724539 | LOB domain-containing protein 12 | AGI-07 | 11.882 | |||||||||||
| Fb0143 | - | - | - | - | - | - | SI361 | Ciclev10007397m | scaffold_1 | 25283807 | 25291472 | C_unshiu_00150:mRNA_43.1 | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
| Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | Ciclev10004730m | scaffold_9 | 22728310 | 22730086 | C_unshiu_00295:mRNA_17.1 | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
| Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | Ciclev10008410m | scaffold_1 | 10946316 | 10949617 | C_unshiu_00201:mRNA_19.1 | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
| Tf0028 | - | - | - | - | - | - | SI377 | Ciclev10022572m | scaffold_3 | 19780711 | 19782241 | C_unshiu_00443:mRNA_20.1 | C_unshiu_00443 | 195567 | 202424 | MADS-box transcription factor | ||||||||||||
| Af1116 | - | - | - | - | - | - | Ciclev10001154m | scaffold_5 | 6749024 | 6753178 | C_unshiu_00100:mRNA_44.1 | C_unshiu_00100 | 361556 | 365479 | Magnesium transporter MRS2-like protein | AGI-09 | 85.810 | |||||||||||
| Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | Ciclev10011842m | scaffold_6 | 21598429 | 21600967 | C_unshiu_00037:mRNA_7.2 | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
| Vt0009 | - | - | - | - | - | - | Ciclev10012382m | scaffold_6 | 24932481 | 24935909 | C_unshiu_00135:mRNA_6.1 | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
| Wy0020 | - | - | - | - | - | - | SI007 | Ciclev10005394m | scaffold_9 | 5549195 | 5553148 | C_unshiu_00164:mRNA_5.1 | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
| Fb0275 | O | - | - | - | - | - | Ciclev10008562m | scaffold_1 | 15883118 | 15887517 | C_unshiu_00288:mRNA_9.1 | C_unshiu_00288 | 55910 | 60461 | Malate dehydrogenase | AGI-01 | 55.687 | |||||||||||
| Gn0052 | - | - | - | - | - | - | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | KmG-032 | 15.450 | JtR-031 | 12.830 | |||||||||
| Wy0032 | OOthers | O | - | - | - | O | O | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
| Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | Ciclev10029386m | scaffold_8 | 8176371 | 8177435 | C_unshiu_00728:mRNA_1.1 | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
| Mf0094 | AAvailable marker | - | - | - | - | O | O | Ciclev10026594m | scaffold_7 | 3721375 | 3722616 | C_unshiu_00169:mRNA_29.1 | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
| Fb0153 | - | - | - | - | - | - | Ciclev10002324m | scaffold_5 | 36347986 | 36350649 | C_unshiu_02857:mRNA_2.1 | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
| Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_00375:mRNA_10.1 | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
| Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_02110:mRNA_3.2 | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
| Al0614 | - | - | - | - | - | - | Ciclev10022348m | scaffold_3 | 44987719 | 44991534 | C_unshiu_00069:mRNA_32.1 | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
| Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10019489m | scaffold_3 | 24840386 | 24845254 | C_unshiu_00286:mRNA_25.1 | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
| Fb0329 | - | - | - | - | - | - | Ciclev10004180m | scaffold_9 | 29237838 | 29242883 | C_unshiu_00606:mRNA_2.1 | C_unshiu_00606 | 13693 | 18703 | Methyltransferase MT-A70 family protein isoform 1 | AGI-03 | 60.686 | |||||||||||
| Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10003485m | scaffold_5 | 36398988 | 36399239 | C_unshiu_00241:mRNA_9.1 | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
| Af1629 | - | - | - | - | - | - | Ciclev10012332m | scaffold_6 | 2969527 | 2973147 | C_unshiu_00060:mRNA_62.1 | C_unshiu_00060 | 539807 | 543307 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | AGI-07 | 39.420 | |||||||||||
| Fb0313 | - | - | - | - | - | - | Ciclev10002602m | scaffold_5 | 29803196 | 29804310 | C_unshiu_00570:mRNA_7.1 | C_unshiu_00570 | 69328 | 70168 | Mitochondrial import inner membrane translocase subunit tim23 | RP-07 | 9.871 | |||||||||||
| Vs0015 | OOthers | - | - | - | - | - | - | C_unshiu_00001:mRNA_84.1 | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
| Al0212 | O | - | - | - | - | - | Ciclev10026128m | scaffold_7 | 5258045 | 5259521 | C_unshiu_00288:mRNA_19.1 | C_unshiu_00288 | 142758 | 144183 | Mitochondrial uncoupling protein 3 | KmG-02 | 43.821 | JtR-02 | 30.507 | RP-08 | ||||||||
| Al0022 | - | - | - | - | - | - | Ciclev10011465m | scaffold_6 | 25364317 | 25368608 | C_unshiu_00009:mRNA_62.1 | C_unshiu_00009 | 346583 | 350755 | Mitochondrial-processing peptidase subunit alpha | SA-09 | 42.503 | |||||||||||
| Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | Ciclev10004660m | scaffold_9 | 2732900 | 2738896 | C_unshiu_00040:mRNA_76.1 | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
| Lp0206 | O | - | - | - | - | - | Ciclev10011764m | scaffold_6 | 20836509 | 20840107 | C_unshiu_00052:mRNA_56.1 | C_unshiu_00052 | 452105 | 455631 | Monodehydroascorbate reductase | AGI-04 | 58.655 | |||||||||||
| Cp0214 | OOthers | - | - | - | - | - | - | Ciclev10016075m | scaffold_2 | 29732249 | 29735969 | C_unshiu_00073:mRNA_25.1 | C_unshiu_00073 | 178507 | 182191 | MOSC domain-containing protein 2, mitochondrial | AGI-06 | 46.660 | ||||||||||
| Af1505 | - | - | - | - | - | - | Ciclev10031326m | scaffold_4 | 1531262 | 1535758 | C_unshiu_00012:mRNA_96.1 | C_unshiu_00012 | 704342 | 708725 | Multiple inositol polyphosphate phosphatase 1 | AGI-07 | 12.283 | |||||||||||
| Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | Ciclev10012265m | scaffold_6 | 22305922 | 22308021 | C_unshiu_00252:mRNA_6.1 | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
| Tf0307 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10009286m | scaffold_1 | 25395688 | 25397278 | C_unshiu_00442:mRNA_24.1 | C_unshiu_00442 | 209015 | 209831 | Myb domain protein 5 | AGI-01 | 23.266 | ||||||||||
| Tf0094 | - | - | - | - | - | - | SI006 | Ciclev10031937m | scaffold_4 | 23957038 | 23959134 | C_unshiu_00001:mRNA_145.1 | C_unshiu_00001 | 950657 | 954895 | Myb family transcription factor APL | AGI-07 | 77.141 | ||||||||||
| Tf0117 | - | - | - | - | - | - | Ciclev10005596m | scaffold_9 | 15107375 | 15113804 | C_unshiu_00170:mRNA_11.1 | C_unshiu_00170 | 91205 | 97326 | Myb family transcription factor APL | AGI-03 | 46.274 | |||||||||||
| Tf0402 | - | - | - | - | - | - | Ciclev10015893m | scaffold_2 | 36211961 | 36216858 | C_unshiu_00077:mRNA_57.1 | C_unshiu_00077 | 335424 | 340163 | MYB-CC type transfactor | AGI-06 | 9.560 | |||||||||||
| Tf0050 | - | - | - | - | - | - | SI104,SI346 | Ciclev10012152m | scaffold_6 | 24874840 | 24876388 | C_unshiu_00135:mRNA_12.1 | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
| Tf0256 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021699m | scaffold_3 | 43420187 | 43422432 | C_unshiu_00411:mRNA_13.1 | C_unshiu_00411 | 116444 | 118424 | Myb-related protein Myb4 | AGI-05 | 52.314 | ||||||||||
| Ov0004 | - | - | - | - | - | - | Ciclev10025545m | scaffold_7 | 20360086 | 20363290 | C_unshiu_00650:mRNA_9.1 | C_unshiu_00650 | 86670 | 89289 | Myo-inositol-1 phosphate synthase | KmG-02 | 17.680 | NAT-02S | ||||||||||
| Tf0240 | - | - | - | - | - | - | SI184 | Ciclev10018505m | scaffold_3 | 42718991 | 42733040 | C_unshiu_00386:mRNA_19.1 | C_unshiu_00386 | 164396 | 178993 | Myosin 2 | ||||||||||||
| Al0204 | - | - | - | - | - | - | Ciclev10008298m | scaffold_1 | 275263 | 280936 | C_unshiu_00003:mRNA_150.2 | C_unshiu_00003 | 1127884 | 1133567 | Myosin heavy chain-like protein | JtR-09S | 5.527 | |||||||||||
| Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
| Sd0004 | - | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 40.459 | |||||||||||||||
| Af1110 | - | - | - | - | - | - | Ciclev10028599m | scaffold_8 | 9656865 | 9660001 | C_unshiu_01425:mRNA_1.1 | C_unshiu_01425 | 333 | 5522 | N-carbamoylputrescine amidase | AGI-08 | 56.690 | |||||||||||
| Lp0031 | - | - | - | - | - | - | Ciclev10027944m | scaffold_8 | 22261408 | 22266208 | C_unshiu_00639:mRNA_5.1 | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
| Tf0332 | - | - | - | - | - | - | SI081 | Ciclev10001976m | scaffold_5 | 37586834 | 37589255 | C_unshiu_00985:mRNA_11.1 | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
| Wy0025 | - | - | - | - | - | - | SI004 | Ciclev10032547m | scaffold_4 | 24434005 | 24435526 | C_unshiu_00001:mRNA_229.1 | C_unshiu_00001 | 1446446 | 1447952 | NAC domain-containing protein 29 | ||||||||||||
| Tf0066 | - | - | - | - | - | - | SI221 | Ciclev10008812m | scaffold_1 | 18270818 | 18273015 | C_unshiu_00187:mRNA_34.1 | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
| Tf0076 | - | - | - | - | - | - | SI266 | Ciclev10031150m | scaffold_4 | 7200135 | 7204232 | C_unshiu_00013:mRNA_63.3 | C_unshiu_00013 | 459064 | 463137 | NAC domain-containing protein 78 | AGI-07 | 38.565 | ||||||||||
| Tf0310 | - | - | - | - | - | - | Ciclev10031598m | scaffold_4 | 19681884 | 19685929 | C_unshiu_00099:mRNA_27.1 | C_unshiu_00099 | 233334 | 237357 | NAC domain-containing protein 8 | AGI-07 | 54.869 | |||||||||||
| Bf0125 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | NAT-03 | 8.920 | RP-03 | 31.431 | |||||||||
| Tf0147 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | AGI-02 | 22.436 | |||||||||||
| Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | Ciclev10020717m | scaffold_3 | 40963774 | 40965744 | C_unshiu_00735:mRNA_9.1 | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
| Gmom22 | - | - | - | - | - | - | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
| Tf0323 | - | - | - | - | - | - | SI030 | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
| Tf0339 | - | - | - | - | - | - | SI019 | Ciclev10032304m | scaffold_4 | 24041593 | 24043549 | C_unshiu_00001:mRNA_158.1 | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
| Af1580 | - | - | - | - | - | - | Ciclev10016368m | scaffold_2 | 35013848 | 35015439 | C_unshiu_00048:mRNA_76.1 | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
| Tf0336 | - | - | - | - | - | - | Ciclev10029022m | scaffold_8 | 10574673 | 10578797 | C_unshiu_02599:mRNA_1.1 | C_unshiu_02599 | 10362 | 14310 | NAD(P)-linked oxidoreductase superfamily protein | AGI-08 | 54.304 | |||||||||||
| Al0308 | - | - | - | - | - | - | SI045 | Ciclev10028262m | scaffold_8 | 24521116 | 24524868 | C_unshiu_00021:mRNA_97.1 | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
| Tf0230 | - | - | - | - | - | - | SI140 | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
| Tf0406 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | AGI-01 | 28.515 | ||||||||||
| Af1047 | - | - | - | - | - | - | Ciclev10019002m | scaffold_3 | 16357227 | 16363309 | C_unshiu_01252:mRNA_3.1 | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
| Cp0459 | - | - | - | - | - | - | Ciclev10016822m | scaffold_2 | 27549660 | 27551146 | C_unshiu_00017:mRNA_86.1 | C_unshiu_00017 | 707192 | 708314 | NADH dehydrogenase-like complex L | AGI-06 | 74.140 | |||||||||||
| Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | Ciclev10008900m | scaffold_1 | 4722889 | 4726339 | C_unshiu_00547:mRNA_9.1 | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
| Bf0033 | - | - | - | - | - | - | SI356,SI379 | Ciclev10007537m | scaffold_1 | 27204998 | 27211059 | C_unshiu_00347:mRNA_22.1 | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
| Mf0007 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10008907m | scaffold_1 | 17471330 | 17472833 | C_unshiu_00044:mRNA_52.1 | C_unshiu_00044 | 424343 | 425685 | NADPH-dependent codeinone reductase-like protein | ||||||||||||
| Al0206 | AAvailable marker | - | - | - | - | O | O | Ciclev10032727m | scaffold_4 | 12309480 | 12311438 | C_unshiu_00365:mRNA_26.1 | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
| Gn0097 | - | - | - | - | - | - | Ciclev10005133m | scaffold_9 | 10246239 | 10248409 | C_unshiu_00372:mRNA_8.1 | C_unshiu_00372 | 77039 | 79209 | Naringenin-chalcone synthase | AGI-02 | ||||||||||||
| Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | Ciclev10022215m | scaffold_3 | 13810497 | 13813004 | C_unshiu_00542:mRNA_3.1 | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
| Tf0153 | AAvailable marker | O | - | - | - | O | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | AGI-05 | 41.267 | ||||||||||
| Tf0154 | AAvailable marker | O | - | - | - | - | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | ||||||||||||
| Cp1791 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10027428m | scaffold_7 | 11604464 | 11607028 | C_unshiu_00582:mRNA_4.1 | C_unshiu_00582 | 10067 | 11470 | NBS-LRR type disease resistance protein | AGI-02 | 12.969 | ||||||||||
| Lp0202 | O | - | - | - | - | - | Ciclev10006509m | scaffold_9 | 3131006 | 3134438 | C_unshiu_00051:mRNA_31.2 | C_unshiu_00051 | 239802 | 243699 | NEDD8-activating enzyme E1 catalytic subunit | AGI-03 | 23.085 | |||||||||||
| Af1600 | - | - | - | - | - | - | Ciclev10013134m | scaffold_6 | 22758027 | 22760875 | C_unshiu_00038:mRNA_51.4 | C_unshiu_00038 | 305110 | 307864 | Negatively light-regulated protein | AGI-04 | 5.122 | |||||||||||
| Ov0501 | - | - | - | - | - | - | Ciclev10019938m | scaffold_3 | 48089473 | 48091232 | C_unshiu_00026:mRNA_86.1 | C_unshiu_00026 | 712172 | 713868 | Nepenthesin II | RP-05 | 61.026 | |||||||||||
| Lp0235 | O | - | - | - | - | - | Ciclev10019848m | scaffold_3 | 9466071 | 9468445 | C_unshiu_00227:mRNA_19.1 | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
| Wy0055 | Wy0055.em | - | - | - | - | - | - | C_unshiu_00005:mRNA_81.1 | C_unshiu_00005 | 686926 | 696896 | Neurochondrin | AGI-01 | 118.691 | ||||||||||||||
| Cp0996 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI340 | Ciclev10004474m | scaffold_9 | 543444 | 546746 | C_unshiu_00007:mRNA_105.1 | C_unshiu_00007 | 630727 | 633783 | Neutral/alkaline invertase | AGI-03 | 9.366 | |||||||||
| Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016069m | scaffold_2 | 32640743 | 32643349 | C_unshiu_00070:mRNA_53.1 | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
| Mf0058 | T3 or more alleleic model | - | - | - | - | - | - | Ciclev10022378m | scaffold_3 | 46818817 | 46822856 | C_unshiu_00053:mRNA_58.1 | C_unshiu_00053 | 481338 | 485184 | Nitrogen regulatory protein P-II | AGI-08 | 57.196 | JtR-05 | 39.516 | ||||||||
| Cp0849 | - | - | - | - | - | - | SI355 | Ciclev10012425m | scaffold_6 | 17651466 | 17653457 | C_unshiu_00090:mRNA_56.2 | C_unshiu_00090 | 364770 | 367591 | Non-green plastid inner envelope membrane protein | ||||||||||||
| Tf0432 | AAvailable marker | O | - | - | - | O | O | Ciclev10016685m | scaffold_2 | 31420457 | 31425299 | C_unshiu_00091:mRNA_39.1 | C_unshiu_00091 | 370141 | 375026 | Nuclear transcription factor Y subunit A-7 | AGI-06 | 38.958 | ||||||||||
| Tf0243 | - | - | - | - | - | - | SI231 | Ciclev10032893m | scaffold_4 | 3636667 | 3641089 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | ||||||||||||
| Tf0348 | - | - | - | - | - | - | SI118 | Ciclev10012920m | scaffold_6 | 11611994 | 11614367 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
| Tf0334 | - | - | - | - | - | - | SI034 | Ciclev10007003m | scaffold_9 | 30983347 | 30984159 | C_unshiu_00003:mRNA_76.2 | C_unshiu_00003 | 557862 | 561962 | Nuclear transcription factor Y subunit C-9 | ||||||||||||
| Cp2229 | AAvailable marker | - | - | - | - | O | O | Ciclev10022058m | scaffold_3 | 4117485 | 4120274 | C_unshiu_00318:mRNA_6.1 | C_unshiu_00318 | 44376 | 47085 | Nucleoside diphosphate kinase | AGI-05 | 27.135 | ||||||||||
| Ov0114 | - | - | - | - | - | - | C_unshiu_00206:mRNA_12.3 | C_unshiu_00206 | 75980 | 77488 | Nucleoside diphosphate kinase | KmG-032 | 18.485 | JtR-031 | 11.761 | |||||||||||||
| Vs0004 | - | - | - | - | - | - | Ciclev10021761m | scaffold_3 | 2078691 | 2083111 | C_unshiu_00490:mRNA_23.1 | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
| Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | Ciclev10013536m | scaffold_6 | 22616979 | 22619271 | C_unshiu_00038:mRNA_27.1 | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
| Al0628 | - | - | - | - | - | - | Ciclev10004696m | scaffold_9 | 28974337 | 28977865 | C_unshiu_00045:mRNA_76.1 | C_unshiu_00045 | 547196 | 550605 | O-glucosyltransferase rumi like | KmG-031 | 5.650 | |||||||||||
| Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | Ciclev10028241m | scaffold_8 | 23456630 | 23459052 | C_unshiu_00375:mRNA_4.1 | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
| Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | Ciclev10004850m | scaffold_9 | 13440332 | 13442904 | C_unshiu_02379:mRNA_2.1 | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
| Tf0397 | - | - | - | - | - | - | SI008 | Ciclev10013334m | scaffold_6 | 23657256 | 23657810 | C_unshiu_00098:mRNA_65.1 | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
| Cp1798 | AAvailable marker | - | - | - | - | O | O | Ciclev10012134m | scaffold_6 | 20319677 | 20323198 | C_unshiu_00215:mRNA_34.1 | C_unshiu_00215 | 205164 | 208490 | Orange 2 | AGI-04 | 60.291 | ||||||||||
| Cp1279 | AAvailable marker | - | - | - | - | O | O | Ciclev10031414m | scaffold_4 | 12900777 | 12903692 | C_unshiu_00461:mRNA_17.1 | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
| Ov0407 | AAvailable marker | - | - | - | - | O | O | Ciclev10000563m | scaffold_5 | 37043417 | 37051080 | C_unshiu_00773:mRNA_1.1 | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
| Bf0138 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10019462m | scaffold_3 | 6072460 | 6076187 | C_unshiu_00428:mRNA_16.2 | C_unshiu_00428 | 119232 | 121021 | Oxygen-evolving enhancer protein 2, chloroplastic | NAT-05 | 14.555 | RP-05 | 24.995 | ||||||||
| Bf0004 | - | - | - | - | - | - | SI273 | Ciclev10005212m | scaffold_9 | 29563003 | 29568705 | C_unshiu_00056:mRNA_33.1 | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
| Af1443 | - | - | - | - | - | - | Ciclev10011413m | scaffold_6 | 25048398 | 25053494 | C_unshiu_00009:mRNA_3.1 | C_unshiu_00009 | 15765 | 28846 | Pentatricopeptide repeat-containing family protein | AGI-04 | 33.808 | |||||||||||
| Cp1880 | AAvailable marker | - | - | - | - | - | O | Ciclev10016235m | scaffold_2 | 9351630 | 9354621 | C_unshiu_00067:mRNA_9.1 | C_unshiu_00067 | 71252 | 74672 | Peptide deformylase | ||||||||||||
| Tf0053 | - | - | - | - | - | - | SI305 | Ciclev10022321m | scaffold_3 | 29153425 | 29156189 | C_unshiu_01169:mRNA_3.1 | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
| Al0402 | AAvailable marker | O | - | - | - | O | O | C_unshiu_00008:mRNA_88.1 | C_unshiu_00008 | 564906 | 567158 | Peptide upstream ORF protein, putative | AGI-08 | 81.190 | KmG-04 | 44.163 | NAT-04 | 28.388 | ||||||||||
| Wy0062 | Wy0062.em | - | - | - | - | - | - | Ciclev10011305m | scaffold_6 | 15214969 | 15222324 | C_unshiu_00034:mRNA_76.1 | C_unshiu_00034 | 634791 | 641934 | Peptidyl-prolyl cis-trans isomerase PASTICCINO1 | AGI-02 | 78.531 | ||||||||||
| Af1026 | O | - | - | - | - | - | Ciclev10016450m | scaffold_2 | 24690261 | 24692734 | C_unshiu_00136:mRNA_33.1 | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
| Af1589 | - | - | - | - | - | - | Ciclev10005524m | scaffold_9 | 30995129 | 30999295 | C_unshiu_00003:mRNA_80.1 | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
| Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | C_unshiu_00087:mRNA_54.1 | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
| Tf0315 | AAvailable marker | O | - | - | - | O | O | Ciclev10012089m | scaffold_6 | 14087181 | 14090115 | C_unshiu_00287:mRNA_20.1 | C_unshiu_00287 | 221944 | 222997 | Phantastica | AGI-08 | 93.657 | ||||||||||
| Ov0510 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011175m | scaffold_6 | 10016564 | 10019369 | C_unshiu_00279:mRNA_11.1 | C_unshiu_00279 | 116848 | 119657 | Phenylalanine ammonia-lyase 1 | KmG-04 | 62.284 | JtR-04 | 3.789 | ||||||||
| Af1452 | - | - | - | - | - | - | Ciclev10018443m | scaffold_3 | 5518457 | 5529974 | C_unshiu_00900:mRNA_3.1 | C_unshiu_00900 | 20186 | 30140 | Pheromone-processing carboxypeptidase kex1 | AGI-05 | 29.863 | |||||||||||
| Lp0009 | DDominant marker | - | - | - | - | - | - | Ciclev10005585m | scaffold_9 | 30171791 | 30177202 | C_unshiu_00134:mRNA_8.1 | C_unshiu_00134 | 71410 | 76705 | Phosphatase 2C 76 isoform 1 | KmG-05S | 36.573 | JtR-05 | 12.427 | ||||||||
| Bf0005 | - | - | - | - | - | - | SI194 | Ciclev10005100m | scaffold_9 | 465444 | 468143 | C_unshiu_00007:mRNA_115.1 | C_unshiu_00007 | 710354 | 712926 | Phosphatase 2C family protein | AGI-03 | 8.177 | ||||||||||
| Al0618 | AAvailable marker | - | - | - | - | O | O | Ciclev10000916m | scaffold_5 | 40872793 | 40877775 | C_unshiu_00123:mRNA_34.1 | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
| Af3822 | - | - | - | - | - | - | Ciclev10004695m | scaffold_9 | 5494254 | 5497030 | C_unshiu_00164:mRNA_13.1 | C_unshiu_00164 | 74059 | 75936 | Phosphate transporter | AGI-03 | 44.864 | |||||||||||
| Af1253 | - | - | - | - | - | - | Ciclev10020405m | scaffold_3 | 3201206 | 3204377 | C_unshiu_00163:mRNA_29.1 | C_unshiu_00163 | 211551 | 214568 | Phosphate/phosphoenolpyruvate translocator | AGI-05 | 24.709 | |||||||||||
| Fb0124 | - | - | - | - | - | - | SI167,SI212 | Ciclev10014164m | scaffold_2 | 11088808 | 11095416 | C_unshiu_00184:mRNA_31.1 | C_unshiu_00184 | 275231 | 281575 | Phosphoenolpyruvate carboxylase | ||||||||||||
| Al0320 | - | - | - | - | - | - | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
| Al0320.2 | Al0320.em | AAvailable marker | - | - | - | - | - | O | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||
| Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10000651m | scaffold_5 | 39858531 | 39862402 | C_unshiu_00096:mRNA_9.1 | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
| Lg2002 | - | - | - | - | - | - | Ciclev10028055m | scaffold_8 | 2646458 | 2649562 | C_unshiu_00152:mRNA_44.1 | C_unshiu_00152 | 294607 | 297615 | Phosphoglycerate dehydrogenase | AGI-08 | 69.974 | |||||||||||
| Cp0030 | O | - | - | - | - | - | Ciclev10019700m | scaffold_3 | 43815647 | 43818118 | C_unshiu_00869:mRNA_1.1 | C_unshiu_00869 | 176 | 1664 | Phospholipase A1-Igamma1, chloroplastic | AGI-05 | 53.642 | |||||||||||
| Vt0030 | Vt0030.k | O | - | - | - | - | - | Ciclev10024917m | scaffold_7 | 11271705 | 11277014 | C_unshiu_01240:mRNA_4.1 | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
| Fb0227 | - | - | - | - | - | - | Ciclev10026002m | scaffold_7 | 2938059 | 2940407 | C_unshiu_00084:mRNA_42.1 | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
| Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | Ciclev10012056m | scaffold_6 | 21137783 | 21142157 | C_unshiu_00052:mRNA_27.2 | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
| Cp1162 | AAvailable marker | - | - | - | - | O | O | Ciclev10001345m | scaffold_5 | 35908181 | 35912917 | C_unshiu_00255:mRNA_35.1 | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
| Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_01048:mRNA_12.1 | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
| Bf0177 | - | - | - | - | - | - | SI060 | Ciclev10022075m | scaffold_3 | 8186689 | 8189902 | C_unshiu_00154:mRNA_43.2 | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
| Cp0221 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10016539m | scaffold_2 | 30648531 | 30649856 | C_unshiu_00125:mRNA_61.1 | C_unshiu_00125 | 360098 | 361069 | Photosystem I reaction center subunit III | ||||||||||||
| Cp2232 | AAvailable marker | - | - | - | - | O | O | Ciclev10002687m | scaffold_5 | 17809523 | 17810742 | C_unshiu_01815:mRNA_5.1 | C_unshiu_01815 | 28593 | 29777 | Photosystem I reaction center subunit N | AGI-02 | 22.436 | ||||||||||
| Af1575 | - | - | - | - | - | - | Ciclev10029551m | scaffold_8 | 17524835 | 17526697 | C_unshiu_02252:mRNA_4.1 | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
| Lp0126 | AAvailable marker | O | - | - | - | O | O | Ciclev10025164m | scaffold_7 | 3946818 | 3949964 | C_unshiu_00801:mRNA_10.1 | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
| Gn0008 | OOthers | - | - | - | - | - | - | SI176 | Ciclev10005632m | scaffold_9 | 17789634 | 17793258 | C_unshiu_00098:mRNA_1.1 | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
| Gn0065 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00021:mRNA_4.1 | C_unshiu_00021 | 34178 | 38574 | Phytoene desaturase | AGI-09 | 79.316 | ||||||||||||||
| Cp2188 | AAvailable marker | - | - | - | - | O | O | Ciclev10028997m | scaffold_8 | 24666729 | 24669708 | C_unshiu_00021:mRNA_116.1 | C_unshiu_00021 | 778469 | 782836 | Phytol kinase | AGI-08 | 2.186 | ||||||||||
| Fb2159 | - | - | - | - | - | - | SI205,SI300 | Ciclev10021136m | scaffold_3 | 39606431 | 39608387 | C_unshiu_00037:mRNA_76.1 | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
| Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | C_unshiu_00343:mRNA_25.1 | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
| Af1370 | - | - | - | - | - | - | Ciclev10009015m | scaffold_1 | 8822834 | 8826308 | C_unshiu_00579:mRNA_6.1 | C_unshiu_00579 | 46507 | 50108 | Plasma membrane | AGI-01 | 56.590 | |||||||||||
| Al0505 | - | - | - | - | - | - | Ciclev10032306m | scaffold_4 | 947943 | 949892 | C_unshiu_00012:mRNA_14.1 | C_unshiu_00012 | 117194 | 125051 | Plasma membrane intrinsic protein | RP-07 | 51.815 | |||||||||||
| If0011 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10013189m | scaffold_6 | 20522569 | 20523527 | C_unshiu_00331:mRNA_8.1 | C_unshiu_00331 | 122906 | 127189 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 | ||||||||||||
| Wy0058 | Wy0058.em | - | - | - | - | - | - | Ciclev10016274m | scaffold_2 | 29140509 | 29143804 | C_unshiu_00022:mRNA_58.1 | C_unshiu_00022 | 424974 | 428249 | Plastid ribosomal protein L15 | ||||||||||||
| Af1059 | - | - | - | - | - | - | Ciclev10011827m | scaffold_6 | 23066384 | 23072168 | C_unshiu_00038:mRNA_98.1 | C_unshiu_00038 | 554982 | 560549 | Plastidic glucose transporter 4 | AGI-04 | 44.840 | |||||||||||
| Bf0008 | - | - | - | - | - | - | SI309 | Ciclev10012950m | scaffold_6 | 22467565 | 22470029 | C_unshiu_00038:mRNA_5.1 | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
| Tf0410 | AAvailable marker | O | - | - | - | O | O | Ciclev10032838m | scaffold_4 | 213798 | 215848 | C_unshiu_00168:mRNA_34.1 | C_unshiu_00168 | 273522 | 275858 | Pollen-specific protein SF3 | AGI-07 | 6.146 | ||||||||||
| Fb2156 | Fb2156.lg | O | - | - | - | - | - | Ciclev10000537m | scaffold_5 | 39992234 | 39996269 | C_unshiu_00096:mRNA_31.1 | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
| Lp0212 | O | - | - | - | - | - | Ciclev10030930m | scaffold_4 | 22697056 | 22699336 | C_unshiu_00004:mRNA_48.1 | C_unshiu_00004 | 381547 | 383756 | Polygalacturonase 1 beta-like protein 3 | AGI-07 | 69.544 | |||||||||||
| Al0011 | Al0010.2 | - | - | - | - | - | - | Ciclev10012654m | scaffold_6 | 10316999 | 10318328 | C_unshiu_00806:mRNA_1.2 | C_unshiu_00806 | 21305 | 22892 | Polyubiquitin | AGI-03 | 46.768 | ||||||||||
| Af1062 | - | - | - | - | - | - | Ciclev10012766m | scaffold_6 | 14892939 | 14897320 | C_unshiu_00102:mRNA_47.1 | C_unshiu_00102 | 331172 | 333886 | PRA1 family protein A1 | AGI-08 | 93.624 | |||||||||||
| Gmom26 | - | - | - | - | - | - | Ciclev10005911m | scaffold_9 | 713868 | 716708 | C_unshiu_00007:mRNA_76.1 | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
| Af1486 | - | - | - | - | - | - | Ciclev10029576m | scaffold_8 | 17510926 | 17513265 | C_unshiu_00962:mRNA_1.1 | C_unshiu_00962 | 434 | 2684 | Prefoldin subunit 4 | AGI-08 | 59.562 | |||||||||||
| Al0601 | - | - | - | - | - | - | C_unshiu_00065:mRNA_8.1 | C_unshiu_00065 | 39268 | 43421 | Probable GTP diphosphokinase RSH2, chloroplastic | AGI-08 | 93.624 | |||||||||||||||
| Wy0028 | AAvailable marker | - | - | - | - | O | O | Ciclev10007806m | scaffold_1 | 25001341 | 25004726 | C_unshiu_00150:mRNA_3.1 | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
| Bf0024 | O | - | - | - | - | - | SI093 | Ciclev10002093m | scaffold_5 | 38134662 | 38138860 | C_unshiu_00319:mRNA_24.1 | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
| Al0224 | AAvailable marker | - | O | - | - | O | O | Ciclev10015872m | scaffold_2 | 26630154 | 26632900 | C_unshiu_00262:mRNA_19.1 | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
| Af1593 | - | - | - | - | - | - | Ciclev10015971m | scaffold_2 | 27738397 | 27741912 | C_unshiu_00745:mRNA_8.1 | C_unshiu_00745 | 82265 | 85742 | Prolactin regulatory element-binding protein, putative | AGI-06 | 61.501 | |||||||||||
| Fb0225 | - | - | - | - | - | - | Ciclev10008570m | scaffold_1 | 4873970 | 4878979 | C_unshiu_00039:mRNA_6.1 | C_unshiu_00039 | 54980 | 59746 | Protein arginine N-methyltransferase 1 | RP-05 | 33.168 | |||||||||||
| Cp1736 | - | - | - | - | - | - | Ciclev10026179m | scaffold_7 | 5640058 | 5643125 | C_unshiu_00761:mRNA_15.2 | C_unshiu_00761 | 89991 | 92755 | Protein CbbY | AGI-02 | 50.716 | |||||||||||
| Gmom19 | - | - | - | - | - | - | Ciclev10011554m | scaffold_6 | 21450811 | 21454133 | C_unshiu_00037:mRNA_27.1 | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
| Bf0016 | O | - | - | - | - | - | Ciclev10002605m | scaffold_5 | 35782419 | 35784765 | C_unshiu_00255:mRNA_23.1 | C_unshiu_00255 | 146364 | 148653 | Protein CutA 1, chloroplastic | RP-09 | 67.943 | |||||||||||
| Af1554 | - | - | - | - | - | - | Ciclev10009386m | scaffold_1 | 23753759 | 23756754 | C_unshiu_00080:mRNA_59.1 | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
| Bf0202 | - | - | - | - | - | - | Ciclev10000607m | scaffold_5 | 24103753 | 24107361 | C_unshiu_00011:mRNA_55.1 | C_unshiu_00011 | 511309 | 514460 | Protein ETHYLENE INSENSITIVE 3 | RP-09 | 27.641 | |||||||||||
| Cp2223 | OOthers | - | - | - | - | - | - | Ciclev10022371m | scaffold_3 | 3483334 | 3485637 | C_unshiu_00933:mRNA_9.1 | C_unshiu_00933 | 86958 | 89273 | Protein LATERAL ORGAN BOUNDARIES | AGI-05 | 25.049 | ||||||||||
| Gmom04 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
| Gmom16 | - | - | - | - | - | - | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
| Tf0419 | AAvailable marker | O | O | O | - | - | O | Ciclev10019228m | scaffold_3 | 47476188 | 47479361 | C_unshiu_00023:mRNA_74.1 | C_unshiu_00023 | 480170 | 486801 | Protein LHY | ||||||||||||
| Cp0537 | AAvailable marker | O | - | - | - | O | O | Ciclev10016779m | scaffold_2 | 34189216 | 34193815 | C_unshiu_00002:mRNA_71.2 | C_unshiu_00002 | 543564 | 547918 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 | AGI-06 | 25.930 | ||||||||||
| Cp0237 | - | - | - | - | - | - | Ciclev10033007m | scaffold_4 | 10652381 | 10655082 | C_unshiu_00483:mRNA_11.1 | C_unshiu_00483 | 100177 | 109515 | Protein LSD1 | AGI-07 | 35.506 | |||||||||||
| Gn0101 | - | - | - | - | - | - | Ciclev10025706m | scaffold_7 | 662802 | 667420 | C_unshiu_00353:mRNA_30.1 | C_unshiu_00353 | 203269 | 207136 | Protein MID1-COMPLEMENTING ACTIVITY 1 | AGI-02 | 77.881 | |||||||||||
| Tf0012 | AAvailable marker | - | - | - | - | O | O | Ciclev10018673m | scaffold_3 | 37601493 | 37607586 | C_unshiu_00502:mRNA_21.1 | C_unshiu_00502 | 155419 | 162660 | Protein NLP8 | AGI-05 | 47.173 | ||||||||||
| Cp0059 | O | - | - | - | - | - | Ciclev10031015m | scaffold_4 | 23075728 | 23081009 | C_unshiu_00001:mRNA_13.1 | C_unshiu_00001 | 89828 | 96147 | Protein NLRC3 | AGI-08 | 86.856 | |||||||||||
| Lp0207 | O | - | - | - | - | - | Ciclev10021695m | scaffold_3 | 6140332 | 6142252 | C_unshiu_01103:mRNA_8.1 | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
| Mf0067 | OOthers | - | - | - | - | - | - | Ciclev10008855m | scaffold_1 | 7264569 | 7269002 | C_unshiu_00837:mRNA_9.1 | C_unshiu_00837 | 91807 | 96079 | Protein phosphatase 1 regulatory subunit pprA | KmG-032 | 18.460 | JtR-031 | 13.247 | ||||||||
| Tf0292 | OOthers | O | - | - | - | - | - | Ciclev10006112m | scaffold_9 | 31139789 | 31143240 | C_unshiu_00003:mRNA_98.2 | C_unshiu_00003 | 698480 | 711976 | Protein strawberry notch | AGI-03 | 77.793 | ||||||||||
| Fb1751 | - | - | - | - | - | - | SI264 | Ciclev10025011m | scaffold_7 | 7977527 | 7984425 | C_unshiu_00121:mRNA_40.1 | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
| Cp0632 | AAvailable marker | O | - | - | - | O | O | Ciclev10007941m | scaffold_1 | 27698934 | 27703620 | C_unshiu_00237:mRNA_7.1 | C_unshiu_00237 | 40930 | 45531 | Protein translocase subunit SecY | AGI-08 | 56.724 | ||||||||||
| Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00008:mRNA_8.1 | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
| Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | Ciclev10011780m | scaffold_6 | 24082263 | 24084635 | C_unshiu_00133:mRNA_13.1 | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
| Af1068 | O | - | - | - | - | - | Ciclev10021732m | scaffold_3 | 40110008 | 40113420 | C_unshiu_00335:mRNA_13.1 | C_unshiu_00335 | 99790 | 103133 | Protein vip1 | AGI-05 | 48.750 | |||||||||||
| Af1622 | - | - | - | - | - | - | Ciclev10008520m | scaffold_1 | 18117264 | 18119451 | C_unshiu_00187:mRNA_23.3 | C_unshiu_00187 | 141733 | 143877 | Protochlorophyllide reductase, chloroplastic | AGI-01 | 54.754 | |||||||||||
| Fb0234 | - | - | - | - | - | - | SI250,SI265 | Ciclev10032271m | scaffold_4 | 16176836 | 16178421 | C_unshiu_00086:mRNA_8.1 | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
| Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | Ciclev10027909m | scaffold_8 | 22730839 | 22737522 | C_unshiu_00158:mRNA_13.1 | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
| Wy0060 | Wy0060.em | - | - | - | - | - | - | Ciclev10020776m | scaffold_3 | 46998745 | 47002683 | C_unshiu_00023:mRNA_2.1 | C_unshiu_00023 | 7129 | 11067 | Pto kinase interactor 1 | AGI-02 | 14.597 | ||||||||||
| Af1056 | - | - | - | - | - | - | Ciclev10015905m | scaffold_2 | 26595972 | 26598955 | C_unshiu_00262:mRNA_14.1 | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
| Cp0026 | - | - | - | - | - | - | Ciclev10014741m | scaffold_2 | 24938686 | 24943643 | C_unshiu_00472:mRNA_8.1 | C_unshiu_00472 | 85278 | 89618 | Putative ADP-glucose pyrophosphorylase small subunit | AGI-06 | 72.449 | |||||||||||
| Af1467 | - | - | - | - | - | - | Ciclev10008651m | scaffold_1 | 24171632 | 24175378 | C_unshiu_00047:mRNA_19.1 | C_unshiu_00047 | 116658 | 120038 | Putative amino acid permease 7 | AGI-01 | 29.784 | |||||||||||
| Tf0279 | - | - | - | - | - | - | SI073 | Ciclev10019219m | scaffold_3 | 49031441 | 49035202 | C_unshiu_00018:mRNA_78.1 | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | AGI-05 | 80.539 | ||||||||||
| Tf0293 | AAvailable marker | O | O | O | - | - | O | Ciclev10019219m | scaffold_3 | 49031441 | 49035202 | C_unshiu_00018:mRNA_78.1 | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | ||||||||||||
| Fb1678 | O | - | - | - | - | - | Ciclev10022198m | scaffold_3 | 6000266 | 6002833 | C_unshiu_00997:mRNA_6.2 | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
| Wy0019 | - | - | - | - | - | - | SI031 | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | ||||||||||||
| Tf0290 | AAvailable marker | O | - | - | - | O | O | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | AGI-08 | 57.802 | ||||||||||
| Cp1034 | AtAvailable marker | - | - | - | - | O | O | Ciclev10005575m | scaffold_9 | 21107894 | 21109983 | C_unshiu_00160:mRNA_22.1 | C_unshiu_00160 | 182942 | 184946 | Putative calcium-binding protein CML48 | AGI-03 | 46.760 | ||||||||||
| Cp1738 | AAvailable marker | - | - | - | - | - | O | SI237,SI296 | Ciclev10025941m | scaffold_7 | 5388458 | 5389981 | C_unshiu_00303:mRNA_12.1 | C_unshiu_00303 | 100918 | 102276 | Putative clathrin assembly protein | |||||||||||
| Cp0018 | - | - | - | - | - | - | Ciclev10005068m | scaffold_9 | 5605470 | 5610840 | C_unshiu_00057:mRNA_49.1 | C_unshiu_00057 | 415460 | 428173 | Putative E3 ubiquitin-protein ligase HERC1 | AGI-03 | 44.848 | |||||||||||
| Cp1031 | AAvailable marker | - | O | - | - | O | O | Ciclev10005224m | scaffold_9 | 2324313 | 2328666 | C_unshiu_00394:mRNA_4.1 | C_unshiu_00394 | 11970 | 16480 | Putative E3 ubiquitin-protein ligase MARCH10 | AGI-03 | 18.610 | ||||||||||
| Tf0289 | - | - | - | - | - | - | SI207 | Ciclev10020486m | scaffold_3 | 915818 | 919213 | C_unshiu_01070:mRNA_6.1 | C_unshiu_01070 | 43545 | 46732 | Putative E3 ubiquitin-protein ligase UBR7 | ||||||||||||
| Af1568 | - | - | - | - | - | - | C_unshiu_00591:mRNA_15.1 | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
| Cp0672 | - | - | - | - | - | - | Ciclev10007769m | scaffold_1 | 28262202 | 28267878 | C_unshiu_00005:mRNA_26.1 | C_unshiu_00005 | 170218 | 174432 | Putative eukaryotic translation initiation factor 4 gamma | AGI-01 | 101.472 | |||||||||||
| Cp1085 | - | - | - | - | - | - | Ciclev10025935m | scaffold_7 | 2390010 | 2391658 | C_unshiu_00025:mRNA_42.1 | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
| Af1109 | - | - | - | - | - | - | C_unshiu_00194:mRNA_16.1 | C_unshiu_00194 | 96415 | 98120 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | AGI-05 | 48.590 | |||||||||||||||
| Gn0100 | - | - | - | - | - | - | Ciclev10028245m | scaffold_8 | 19259623 | 19261508 | C_unshiu_00814:mRNA_2.1 | C_unshiu_00814 | 13987 | 15768 | Putative lycopene beta cyclase | AGI-08 | 44.669 | |||||||||||
| Tf0303 | - | - | - | - | - | - | SI082 | Ciclev10030491m | scaffold_4 | 6325180 | 6334300 | C_unshiu_00210:mRNA_10.1 | C_unshiu_00210 | 52148 | 60690 | Putative lysine-specific demethylase ELF6 | ||||||||||||
| Af2893 | - | - | - | - | - | - | Ciclev10025356m | scaffold_7 | 1739443 | 1743149 | C_unshiu_01334:mRNA_6.1 | C_unshiu_01334 | 25863 | 29359 | Putative mitochondrial chaperone BCS1-B | AGI-02 | 73.779 | |||||||||||
| Tf0103 | - | - | - | - | - | - | Ciclev10002094m | scaffold_5 | 354416 | 357301 | C_unshiu_01920:mRNA_2.1 | C_unshiu_01920 | 10140 | 12134 | Putative NAC domain-containing protein 94 | AGI-09 | 93.685 | |||||||||||
| Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10013467m | scaffold_6 | 23430375 | 23436161 | C_unshiu_00098:mRNA_32.2 | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
| Tf0212 | - | - | - | - | - | - | SI196 | Ciclev10030538m | scaffold_4 | 19816800 | 19825304 | C_unshiu_00535:mRNA_20.1 | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
| Fb0389 | - | - | - | - | - | - | Ciclev10014121m | scaffold_2 | 25179668 | 25188103 | C_unshiu_00087:mRNA_31.1 | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
| Tf0319 | - | - | - | - | - | - | SI152 | Ciclev10026319m | scaffold_7 | 6872666 | 6877291 | C_unshiu_00166:mRNA_10.1 | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
| Al0313 | AAvailable marker | O | - | - | - | O | O | Ciclev10011272m | scaffold_6 | 23966039 | 23969583 | C_unshiu_00133:mRNA_4.2 | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
| Wy0048 | Wy0048.k | - | - | - | - | - | - | Ciclev10010999m | scaffold_6 | 19900235 | 19904192 | C_unshiu_00043:mRNA_54.1 | C_unshiu_00043 | 424252 | 427984 | Putative receptor protein kinase TMK1 | AGI-04 | 63.371 | NAT-04 | 21.157 | ||||||||
| Af1700 | - | - | - | - | - | - | Ciclev10004322m | scaffold_9 | 18502293 | 18505531 | C_unshiu_00138:mRNA_34.1 | C_unshiu_00138 | 182719 | 186200 | Putative receptor protein kinase TMK1 | AGI-03 | 54.060 | |||||||||||
| Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | Ciclev10004372m | scaffold_9 | 25073693 | 25080376 | C_unshiu_00119:mRNA_33.1 | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
| Bf0019 | - | - | - | - | - | - | Ciclev10028586m | scaffold_8 | 232123 | 235806 | C_unshiu_00376:mRNA_8.1 | C_unshiu_00376 | 72474 | 76027 | Putative serine/threonine-protein kinase Cx32 | RP-04 | ||||||||||||
| Tf0004 | - | - | - | - | - | - | SI219,SI330 | Ciclev10014045m | scaffold_2 | 33074821 | 33084014 | C_unshiu_00153:mRNA_7.1 | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
| Tf0411 | OOthers | O | - | - | - | - | - | Ciclev10020263m | scaffold_3 | 38111191 | 38116265 | C_unshiu_00523:mRNA_15.1 | C_unshiu_00523 | 100297 | 104594 | Putative transcription factor PosF21 | AGI-05 | 48.613 | ||||||||||
| Edb003 | OOthers | - | - | - | - | - | - | Ciclev10032012m | scaffold_4 | 16046322 | 16048971 | C_unshiu_01260:mRNA_4.1 | C_unshiu_01260 | 30136 | 32342 | Putative WRKY transcription factor 28 | AGI-07 | 41.830 | ||||||||||
| Gmom29 | - | - | - | - | - | - | Ciclev10000654m | scaffold_5 | 12677414 | 12680761 | C_unshiu_00578:mRNA_7.1 | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
| Tf0010 | - | - | - | - | - | - | Ciclev10021038m | scaffold_3 | 1054257 | 1056078 | C_unshiu_00609:mRNA_18.1 | C_unshiu_00609 | 77883 | 79313 | Putative WRKY transcription factor 41 | AGI-05 | ||||||||||||
| Tf0321 | - | - | - | - | - | - | SI003 | Ciclev10032283m | scaffold_4 | 24341642 | 24346244 | C_unshiu_00001:mRNA_213.1 | C_unshiu_00001 | 1358115 | 1363266 | Putative WRKY transcription factor 57 | ||||||||||||
| Cp0093 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10032427m | scaffold_4 | 23596434 | 23599906 | C_unshiu_00001:mRNA_89.1 | C_unshiu_00001 | 587949 | 598235 | Putative WRKY transcription factor 72 | AGI-07 | 74.537 | ||||||||||
| Tf0148 | AAvailable marker | O | - | - | - | O | O | SI119 | Ciclev10032816m | scaffold_4 | 20998708 | 21001535 | C_unshiu_00010:mRNA_116.1 | C_unshiu_00010 | 869802 | 872410 | Putative WRKY transcription factor 75 | AGI-07 | 64.812 | |||||||||
| Lp0103 | OOthers | - | - | - | - | - | - | Ciclev10012274m | scaffold_6 | 16393309 | 16395378 | C_unshiu_00332:mRNA_15.1 | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
| Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | Ciclev10000615m | scaffold_5 | 43060442 | 43066562 | C_unshiu_00370:mRNA_39.2 | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
| Lp0237 | Lp0237.k | - | - | - | - | - | - | Ciclev10007524m | scaffold_1 | 25987803 | 25992258 | C_unshiu_00066:mRNA_23.1 | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
| Ov0419 | AAvailable marker | - | - | - | - | - | O | Ciclev10011593m | scaffold_6 | 16709179 | 16712039 | C_unshiu_00008:mRNA_31.2 | C_unshiu_00008 | 178086 | 180944 | Pyruvate decarboxylase | RP-04 | 11.143 | ||||||||||
| Bf1186 | - | - | - | - | - | - | SI245 | Ciclev10012047m | scaffold_6 | 21912438 | 21917736 | C_unshiu_00079:mRNA_40.1 | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
| Af1100 | - | - | - | - | - | - | Ciclev10026703m | scaffold_7 | 10853487 | 10855215 | C_unshiu_00451:mRNA_17.1 | C_unshiu_00451 | 120744 | 122474 | Ran BP2/NZF zinc finger-like superfamily protein isoform 1 | AGI-02 | 13.326 | |||||||||||
| Ov0105 | MDisagree by Marco analysis | O | - | - | - | - | - | SI126,SI278 | Ciclev10031362m | scaffold_4 | 23552856 | 23556415 | C_unshiu_00001:mRNA_81.1 | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | NAT-07 | 36.023 | RP-07 | ||||||||
| Ov0105.2 | Ov0106.2 | - | - | - | - | - | - | Ciclev10031362m | scaffold_4 | 23552856 | 23556415 | C_unshiu_00001:mRNA_81.1 | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | AGI-07 | 74.064 | KmG-07 | 15.390 | JtR-07 | 5.947 | ||||||
| Ks9010 | AAvailable marker | - | - | - | - | O | O | Ciclev10007188m | scaffold_9 | 29460866 | 29463385 | C_unshiu_00056:mRNA_15.1 | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
| Tf0238 | - | - | - | - | - | - | SI114 | Ciclev10026387m | scaffold_7 | 551893 | 553909 | C_unshiu_01559:mRNA_5.1 | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
| Tf0112 | O | - | - | - | - | - | Ciclev10031118m | scaffold_4 | 17014582 | 17026325 | C_unshiu_00225:mRNA_9.1 | C_unshiu_00225 | 37090 | 44898 | Regulation of nuclear pre-mRNA domain-containing protein 1B | AGI-07 | 43.014 | |||||||||||
| Fb0138 | - | - | - | - | - | - | Ciclev10000092m | scaffold_5 | 38499024 | 38504883 | C_unshiu_00183:mRNA_7.1 | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
| Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | C_unshiu_00139:mRNA_45.1 | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
| Af1036 | O | - | - | - | - | - | Ciclev10021080m | scaffold_3 | 7016831 | 7019863 | C_unshiu_00425:mRNA_11.1 | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
| Edp005 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10000211m | scaffold_5 | 21203994 | 21212595 | C_unshiu_00020:mRNA_80.1 | C_unshiu_00020 | 742433 | 758888 | Retinoblastoma protein 2 | AGI-09 | 105.195 | RP-09 | 23.442 | ||||||||
| Cp1628 | - | - | - | - | - | - | Ciclev10021963m | scaffold_3 | 12822911 | 12825620 | C_unshiu_02666:mRNA_2.1 | C_unshiu_02666 | 10104 | 12687 | Rhodanese/cell cycle control phosphatase superfamily protein | AGI-05 | 41.272 | |||||||||||
| Cp2237 | AAvailable marker | - | - | - | - | O | O | Ciclev10028314m | scaffold_8 | 13190041 | 13194829 | C_unshiu_01736:mRNA_2.1 | C_unshiu_01736 | 18986 | 23543 | Riboflavin biosynthesis protein ribBA, chloroplastic | AGI-08 | 55.965 | ||||||||||
| Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011346m | scaffold_6 | 7983788 | 7991526 | C_unshiu_02325:mRNA_1.1 | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
| Af1043 | - | - | - | - | - | - | Ciclev10026060m | scaffold_7 | 20049936 | 20052008 | C_unshiu_00519:mRNA_19.1 | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
| Cp0062 | O | - | - | - | - | - | Ciclev10032378m | scaffold_4 | 16107199 | 16109587 | C_unshiu_01642:mRNA_2.1 | C_unshiu_01642 | 16316 | 20085 | Ribose-phosphate diphosphokinase | AGI-07 | 45.716 | |||||||||||
| Cp0233 | - | - | - | - | - | - | Ciclev10031694m | scaffold_4 | 11210879 | 11216325 | C_unshiu_00061:mRNA_64.1 | C_unshiu_00061 | 550725 | 556167 | Ribose-phosphate pyrophosphokinase 4 | AGI-07 | 37.826 | |||||||||||
| Al0234 | OOthers | - | - | - | - | - | - | Ciclev10005909m | scaffold_9 | 1372972 | 1374927 | C_unshiu_00369:mRNA_20.1 | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
| Af1396 | - | - | - | - | - | - | Ciclev10022545m | scaffold_3 | 4920662 | 4923421 | C_unshiu_00520:mRNA_16.2 | C_unshiu_00520 | 166824 | 167867 | Ribosomal protein L19 family protein | AGI-05 | 28.041 | |||||||||||
| Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | Ciclev10031860m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
| Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | Ciclev10031974m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
| Tf0163 | AAvailable marker | O | - | - | - | O | O | Ciclev10010423m | scaffold_1 | 26740822 | 26744016 | C_unshiu_00105:mRNA_35.1 | C_unshiu_00105 | 316978 | 320206 | RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 | AGI-01 | 31.240 | ||||||||||
| Bf0146 | O | - | - | - | - | - | Ciclev10022345m | scaffold_3 | 48528820 | 48531316 | C_unshiu_00026:mRNA_37.1 | C_unshiu_00026 | 280361 | 282836 | RRNA-processing protein FCF1 | AGI-05 | 78.274 | |||||||||||
| Bf0193 | O | - | - | - | - | - | SI100,SI109 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
| Tf0330 | - | - | - | - | - | - | SI064,SI139 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
| Lg2005 | - | - | - | - | - | - | Ciclev10002751m | scaffold_5 | 42187714 | 42189727 | C_unshiu_00192:mRNA_45.1 | C_unshiu_00192 | 319592 | 321612 | SCF ubiquitin ligase, SKP1 component | AGI-09 | 34.172 | |||||||||||
| Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10002770m | scaffold_5 | 29463604 | 29466318 | C_unshiu_01370:mRNA_6.1 | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
| Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10008869m | scaffold_1 | 23654785 | 23658857 | C_unshiu_00175:mRNA_30.1 | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
| Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | Ciclev10015053m | scaffold_2 | 31036088 | 31038222 | C_unshiu_00143:mRNA_11.1 | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
| Bf0229 | - | - | - | - | - | - | SI253 | Ciclev10004848m | scaffold_9 | 17242218 | 17245901 | C_unshiu_00122:mRNA_16.1 | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
| Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | Ciclev10020840m | scaffold_3 | 30648732 | 30651259 | C_unshiu_00759:mRNA_1.1 | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
| Bf0161 | - | - | - | - | - | - | SI089,SI348 | Ciclev10015189m | scaffold_2 | 6658003 | 6660691 | C_unshiu_00072:mRNA_47.1 | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
| Al0228 | - | - | - | - | - | - | Ciclev10009018m | scaffold_1 | 26206063 | 26208427 | C_unshiu_00315:mRNA_25.1 | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
| Tf0199 | - | - | - | - | - | - | SI023,SI157 | Ciclev10000697m | scaffold_5 | 30994812 | 30999834 | C_unshiu_00422:mRNA_12.1 | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
| Af3017 | - | - | - | - | - | - | Ciclev10031492m | scaffold_4 | 24401841 | 24406470 | C_unshiu_00001:mRNA_224.1 | C_unshiu_00001 | 1415778 | 1420221 | Serine/threonine-protein kinase PBS1 | AGI-07 | 83.217 | |||||||||||
| Af1377 | - | - | - | - | - | - | Ciclev10001143m | scaffold_5 | 32780339 | 32783349 | C_unshiu_00224:mRNA_50.1 | C_unshiu_00224 | 297837 | 300694 | Seryl-tRNA synthetase (Serin-tRNA ligase) | AGI-09 | 70.624 | |||||||||||
| Cp1084 | OOthers | - | - | - | - | - | - | C_unshiu_01090:mRNA_3.1 | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
| Ov0325 | - | - | - | - | - | - | Ciclev10016692m | scaffold_2 | 35180594 | 35182774 | C_unshiu_00048:mRNA_54.1 | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
| Al0231 | - | - | - | - | - | - | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
| Edw001 | AAvailable marker | - | - | - | - | - | O | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | ||||||||||||
| Af1437 | - | - | - | - | - | - | Ciclev10002114m | scaffold_5 | 1474396 | 1479079 | C_unshiu_00060:mRNA_37.1 | C_unshiu_00060 | 309328 | 313345 | Short-chain alcohol dehydrogenase | AGI-09 | 92.804 | |||||||||||
| Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | Ciclev10030998m | scaffold_4 | 17143350 | 17147918 | C_unshiu_00478:mRNA_2.1 | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
| Tf0143 | - | - | - | - | - | - | SI127 | Ciclev10004758m | scaffold_9 | 30040457 | 30044615 | C_unshiu_00134:mRNA_22.1 | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
| Ov0512 | OOthers | O | - | - | - | - | - | Ciclev10006241m | scaffold_9 | 27198508 | 27199642 | C_unshiu_00433:mRNA_19.1 | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
| If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10022993m | scaffold_3 | 42229224 | 42231230 | C_unshiu_00322:mRNA_21.1 | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
| Al0207 | OOthers | - | - | - | - | - | - | Ciclev10020027m | scaffold_3 | 4366802 | 4370111 | C_unshiu_00186:mRNA_18.1 | C_unshiu_00186 | 178635 | 181547 | SNF1-related protein kinase regulatory subunit gamma-1 | AGI-09 | 84.537 | JtR-09S | 9.929 | ||||||||
| Bf0195 | - | - | - | - | - | - | SI369 | Ciclev10000780m | scaffold_5 | 31069237 | 31075092 | C_unshiu_00422:mRNA_5.1 | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
| Cp1144 | OOthers | - | - | - | - | - | - | Ciclev10028086m | scaffold_8 | 2649991 | 2655756 | C_unshiu_00152:mRNA_43.1 | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
| Cp0532 | - | - | - | - | - | - | Ciclev10020319m | scaffold_3 | 30393811 | 30398972 | C_unshiu_00501:mRNA_15.1 | C_unshiu_00501 | 133280 | 137847 | Solanesyl diphosphate synthase | AGI-05 | 42.168 | |||||||||||
| Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | Ciclev10014319m | scaffold_2 | 35354776 | 35363026 | C_unshiu_00048:mRNA_32.1 | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
| Al0247 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10029281m | scaffold_8 | 2227827 | 2230752 | C_unshiu_00024:mRNA_15.1 | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
| Gn0021 | AAvailable marker | - | - | - | - | O | O | Ciclev10000597m | scaffold_5 | 39630111 | 39635609 | C_unshiu_01033:mRNA_10.1 | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
| Ov0312 | - | - | - | - | - | - | Ciclev10018858m | scaffold_3 | 1344192 | 1349935 | C_unshiu_00541:mRNA_19.1 | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
| Fb0322 | O | - | - | - | - | - | Ciclev10030532m | scaffold_4 | 3249710 | 3254808 | C_unshiu_00342:mRNA_35.1 | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
| Wy0063 | Wy0063.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | AGI-01 | 33.445 | ||||||||||
| Wy0064 | Wy0064.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | ||||||||||||
| Al0637 | AAvailable marker | O | - | - | - | - | O | SI353 | Ciclev10019147m | scaffold_3 | 2939620 | 2941934 | C_unshiu_00092:mRNA_51.1 | C_unshiu_00092 | 363486 | 365791 | Spotted leaf protein, putative | |||||||||||
| Bf0115 | O | - | - | - | - | - | SI054,SI295 | Ciclev10029066m | scaffold_8 | 6317205 | 6322458 | C_unshiu_00484:mRNA_11.3 | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
| Tf0140 | - | - | - | - | - | - | Ciclev10004457m | scaffold_9 | 225971 | 232459 | C_unshiu_00007:mRNA_144.1 | C_unshiu_00007 | 929895 | 935477 | Squamosa promoter-binding-like protein 1 | AGI-03 | 9.830 | |||||||||||
| Tf0267 | AAvailable marker | O | - | - | - | O | O | Ciclev10031834m | scaffold_4 | 12571526 | 12575185 | C_unshiu_00847:mRNA_8.1 | C_unshiu_00847 | 48651 | 52296 | Squamosa promoter-binding-like protein 13 | AGI-07 | 37.800 | ||||||||||
| Gn0047 | - | - | - | - | - | - | Ciclev10011938m | scaffold_6 | 18741181 | 18744166 | C_unshiu_00139:mRNA_23.1 | C_unshiu_00139 | 204645 | 207518 | Squamosa promoter-binding-like protein 9 | KmG-04 | 48.092 | |||||||||||
| Cp1585 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | ||||||||||||
| Tf0083 | - | - | - | - | - | - | SI129 | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Tf0420 | AAvailable marker | O | O | O | - | O | O | Ciclev10022018m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Al0513 | OOthers | - | - | - | - | - | - | Ciclev10009222m | scaffold_1 | 8046181 | 8049306 | C_unshiu_00191:mRNA_21.1 | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
| Ov0015 | OOthers | O | - | - | - | - | - | SI304 | Ciclev10026223m | scaffold_7 | 8255046 | 8256442 | C_unshiu_02827:mRNA_2.1 | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
| Af1508 | - | - | - | - | - | - | Ciclev10011580m | scaffold_6 | 21983044 | 21991500 | C_unshiu_00079:mRNA_48.1 | C_unshiu_00079 | 328854 | 336213 | Stomatal closure-related actin-binding protein 3 | AGI-04 | 1.342 | |||||||||||
| Vt0001 | AAvailable marker | - | - | - | - | O | O | Ciclev10014290m | scaffold_2 | 35624935 | 35628855 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
| Vt0011 | AAvailable marker | - | - | - | - | O | O | Ciclev10021162m | scaffold_3 | 12984411 | 12986574 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
| Al0422 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10013176m | scaffold_6 | 14495473 | 14496662 | C_unshiu_00032:mRNA_34.1 | C_unshiu_00032 | 369423 | 370581 | Subtilisin inhibitor 1, putative | AGI-08 | 93.695 | ||||||||||
| Gn0017 | - | - | - | - | - | - | Ciclev10007311m | scaffold_1 | 25880824 | 25887976 | C_unshiu_00005:mRNA_103.1 | C_unshiu_00005 | 841899 | 847089 | Sucrose phosphate synthase | AGI-01 | 30.293 | KmG-01 | 17.862 | |||||||||
| Gn0011 | - | - | - | - | - | - | Ciclev10007488m | scaffold_1 | 24814539 | 24819264 | C_unshiu_00341:mRNA_12.1 | C_unshiu_00341 | 85182 | 89905 | Sucrose synthase | KmG-01 | 21.459 | |||||||||||
| Gn0012 | - | - | - | - | - | - | Ciclev10018889m | scaffold_3 | 46011238 | 46017249 | C_unshiu_00139:mRNA_16.1 | C_unshiu_00139 | 135708 | 141900 | Sucrose synthase | KmG-05S | 78.527 | |||||||||||
| Bf0123 | - | - | - | - | - | - | SI141 | Ciclev10011473m | scaffold_6 | 15803864 | 15809998 | C_unshiu_00284:mRNA_13.1 | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
| Bf0411 | ||||||||||||||||||||||||||||