Citrus CAPS Marker Database

National Agriculture and Food Research Organization
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Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Bf1207 ------TP Ciclev10010835mscaffold_12291269522913798J C_unshiu_00103:mRNA_59.1C_unshiu_00103319187320041Hypothetical proteinAGI-01
Bf0013 O-----TP Ciclev10008507mscaffold_12311173323116067NoAGI-01RP-0147.360
Tf0449 OOthers O-----TP Ciclev10009165mscaffold_12825430728257305J C_unshiu_01997:mRNA_4.1C_unshiu_019973253935330Translation initiation factor IF-3AGI-010.404
Tf0307 Bno homozygous cultivar with minor allele O-----TP Ciclev10009286mscaffold_12539568825397278J C_unshiu_00442:mRNA_24.1C_unshiu_00442209015209831Myb domain protein 5AGI-0123.266
Cp2158 MDisagree by Marco analysis ------TP Ciclev10007944mscaffold_12284739722852110J C_unshiu_00103:mRNA_47.1C_unshiu_00103254015258614Trigger factor type chaperone family proteinAGI-0124.422
Af1084 ------TP Ciclev10008467mscaffold_12571686225720071J C_unshiu_00066:mRNA_57.1C_unshiu_00066369928382143Hypothetical proteinAGI-0124.643
Af1568 ------J C_unshiu_00591:mRNA_15.1C_unshiu_00591108974112318Putative elongation factor 2-likeAGI-0124.954
Tf0168 AAvailable marker OO-OOOSI175TP Ciclev10007563mscaffold_12489876924905716J C_unshiu_00341:mRNA_22.1C_unshiu_00341170777178753AT-rich interactive domain-containing protein 4AGI-0125.752
Wy0028 AAvailable marker ----OOTP Ciclev10007806mscaffold_12500134125004726J C_unshiu_00150:mRNA_3.1C_unshiu_001501865222079Probable pectinesterase/pectinesterase inhibitor 61AGI-0126.171KmG-01
Fb0143 ------SI361TP Ciclev10007397mscaffold_12528380725291472J C_unshiu_00150:mRNA_43.1C_unshiu_00150325164333089LRR receptor-like serine/threonine-protein kinase ERL1AGI-0126.176RP-0164.368
Mf0086 AAvailable marker O---OOSI220,SI315TP Ciclev10009756mscaffold_12559249425593617J C_unshiu_00066:mRNA_75.1C_unshiu_0006650099250183317.9 kDa class II heat shock proteinAGI-0126.428KmG-0119.692JtR-01S57.666RP-0169.936
Tf0049 ------SI328TP Ciclev10008919mscaffold_12427399324277800J C_unshiu_00047:mRNA_33.1C_unshiu_00047212549221653WD domain protein-likeAGI-0126.841
Ks9001 ------TP Ciclev10008207mscaffold_12454810924552107J C_unshiu_00047:mRNA_72.1C_unshiu_00047475125488565Inter-alpha-trypsin inhibitor heavy chain-related isoform 1AGI-0127.192JtR-01S61.287
Al0636 AAvailable marker O--OOOSI313TP Ciclev10007493mscaffold_12377679623782088J C_unshiu_00080:mRNA_56.1C_unshiu_00080464290469444WW domain-containing proteinAGI-0127.489KmG-0125.751JtR-01S63.210NAT-01S12.652RP-0148.896
Fb0237 ------TP Ciclev10007227mscaffold_12348720023497316J C_unshiu_00338:mRNA_20.1C_unshiu_00338134033144369Hypothetical proteinAGI-0128.325
Tf0406 Bno homozygous cultivar with minor allele O-----TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1AGI-0128.515
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Bf0036 AAvailable marker OO-OOOTP Ciclev10008751mscaffold_12284094722844111J C_unshiu_00103:mRNA_45.1C_unshiu_00103244231250643GrpE protein homologAGI-0129.144RP-0146.445
Af1467 ------TP Ciclev10008651mscaffold_12417163224175378J C_unshiu_00047:mRNA_19.1C_unshiu_00047116658120038Putative amino acid permease 7AGI-0129.784
Lp0237Lp0237.k ------TP Ciclev10007524mscaffold_12598780325992258J C_unshiu_00066:mRNA_23.1C_unshiu_00066112710117006Pyrophosphate-energized vacuolar membrane proton pumpAGI-0129.815KmG-0113.444JtR-01S57.629NAT-01S8.967
Lp0211 O-----TP Ciclev10009567mscaffold_12581694925818472J C_unshiu_00066:mRNA_48.1C_unshiu_00066279404280861Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1AGI-0130.175RP-0124.533
Af1094 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinAGI-0130.175
Gn0017 ------TP Ciclev10007311mscaffold_12588082425887976J C_unshiu_00005:mRNA_103.1C_unshiu_00005841899847089Sucrose phosphate synthaseAGI-0130.293KmG-0117.862
Fb0103 OOthers O-----SI155TP Ciclev10008255mscaffold_12275871222761740J C_unshiu_00103:mRNA_27.1C_unshiu_00103160138163082GDP-L-galactose phosphorylaseAGI-0130.703JtR-01S6.418
Al0407 AAvailable marker O---OOTP Ciclev10009315mscaffold_12657605926578193J C_unshiu_00131:mRNA_17.1C_unshiu_0013112115212318360S ribosomal protein L7AGI-0131.240KmG-0115.673JtR-01S57.666RP-0179.425
Tf0163 AAvailable marker O---OOTP Ciclev10010423mscaffold_12674082226744016J C_unshiu_00105:mRNA_35.1C_unshiu_00105316978320206RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1AGI-0131.240
Bf0033 ------SI356,SI379TP Ciclev10007537mscaffold_12720499827211059J C_unshiu_00347:mRNA_22.1C_unshiu_00347166830172467NADPH--hemoprotein reductaseAGI-0132.408RP-0185.146
Wy0063Wy0063.em ------TP Ciclev10021336mscaffold_32939509429402560J C_unshiu_00549:mRNA_8.1C_unshiu_005498314990542Splicing regulatory glutamine/lysine-rich protein 1AGI-0133.445
Cp0748 ------TP Ciclev10022288mscaffold_33467345134674900J C_unshiu_00669:mRNA_14.1C_unshiu_00669103814104779Light-dependent short hypocotyls proteinAGI-0133.562
Tf0124 ------TP Ciclev10007717mscaffold_12745735827462893J C_unshiu_00237:mRNA_37.1C_unshiu_00237259818273281Dethiobiotin synthaseAGI-0134.062
Tf0077 O-----SI135TP Ciclev10008135mscaffold_12843397228437921J C_unshiu_00590:mRNA_15.1C_unshiu_005908643090131WRKYAGI-0134.814
Wy0026 HDisagree on Clementine haploid genotype ------TP Ciclev10010857mscaffold_12832134228323314J C_unshiu_02224:mRNA_5.1C_unshiu_022243017631684Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseAGI-0135.518
Cp0671 AAvailable marker ----OOTP Ciclev10009489mscaffold_12835394828356507J C_unshiu_00590:mRNA_26.1C_unshiu_00590165626168046UPF0133 proteinAGI-0136.113
Al0029 Bno homozygous cultivar with minor allele O-----J C_unshiu_00305:mRNA_10.1C_unshiu_003056993873026Basic helix-loop-helix transcription factorAGI-0137.357JtR-01S50.000
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Al0525 OOthers O-----TP Ciclev10026706mscaffold_7252320254023J C_unshiu_00312:mRNA_20.2C_unshiu_00312114652116351High mobility group (HMG)-box proteinAGI-0138.939KmG-0141.081
Bf0026 ------TP Ciclev10008765mscaffold_12108290221086082J C_unshiu_00487:mRNA_12.1C_unshiu_00487113166115416Thiazole biosynthetic enzymeAGI-0143.164RP-0156.137
Af1424 ------TP Ciclev10008953mscaffold_11868887318690138J C_unshiu_00137:mRNA_44.1C_unshiu_00137354434355481CFE proteinAGI-0143.613
Tf0058 ------SI257TP Ciclev10009065mscaffold_12088510220889283J C_unshiu_00395:mRNA_8.2C_unshiu_003955097854866Fertilization-independent endosperm proteinAGI-0146.623
Bf0182 O-----TP Ciclev10009454mscaffold_11783133317834889J C_unshiu_00429:mRNA_12.1C_unshiu_0042990883942963-deoxy-D-manno-octulosonate cytidylyltransferaseAGI-0147.439
Af1622 ------TP Ciclev10008520mscaffold_11811726418119451J C_unshiu_00187:mRNA_23.3C_unshiu_00187141733143877Protochlorophyllide reductase, chloroplasticAGI-0154.754
Fb0275 O-----TP Ciclev10008562mscaffold_11588311815887517J C_unshiu_00288:mRNA_9.1C_unshiu_002885591060461Malate dehydrogenaseAGI-0155.687
Tf0059 ------SI101TP Ciclev10007297mscaffold_11288372212897805J C_unshiu_00450:mRNA_3.1C_unshiu_004503695658462AGC family Serine/Threonine kinase family proteinAGI-0156.416
Af1370 ------TP Ciclev10009015mscaffold_188228348826308J C_unshiu_00579:mRNA_6.1C_unshiu_005794650750108Plasma membraneAGI-0156.590
Bf1192 ------TP Ciclev10008160mscaffold_11067865310684627J C_unshiu_00242:mRNA_11.1C_unshiu_00242100038105603Casein kinase I-like proteinAGI-0157.863
Wy0008 HDisagree on Clementine haploid genotype O-----TP Ciclev10009193mscaffold_192973609299641NoAGI-0157.863KmG-0143.003JtR-01S99.300
Gn0069 ULess informative for main cultivars O-----SI086,SI375TP Ciclev10008410mscaffold_11094631610949617J C_unshiu_00201:mRNA_19.1C_unshiu_00201212151227232Lycopene epsilon cyclaseAGI-0157.863
Al0619 ------TP Ciclev10005142mscaffold_922340662238313J C_unshiu_00311:mRNA_12.1C_unshiu_003115593360057TLP domain class transcription factorAGI-0157.863KmG-0139.698
Cp1624 AAvailable marker -O-OOOSI307TP Ciclev10008537mscaffold_11806829718070262J C_unshiu_00187:mRNA_17.1C_unshiu_0018799220100762CBS domain-containing protein CBSX5AGI-0158.420KmG-0153.054
Tf0066 ------SI221TP Ciclev10008812mscaffold_11827081818273015J C_unshiu_00187:mRNA_34.1C_unshiu_00187287391289585NAC domain-containing protein 72AGI-0158.420
Al0513 OOthers ------TP Ciclev10009222mscaffold_180461818049306J C_unshiu_00191:mRNA_21.1C_unshiu_00191243988246458Stem 28 kDa glycoproteinAGI-0160.031KmG-0141.591
Fb0478 ------TP Ciclev10008010mscaffold_11459224814596429J C_unshiu_00071:mRNA_18.1C_unshiu_00071196512200666Beta-glucosidase 44AGI-0161.025
Lp0219 ------TP Ciclev10032329mscaffold_461289526131314J C_unshiu_01202:mRNA_8.1C_unshiu_012025769160017Acyl-CoA N-acyltransferases superfamily protein isoform 1AGI-0161.636NAT-01S60.000
Mf0033 AAvailable marker ----OOTP Ciclev10010044mscaffold_162276176228389J C_unshiu_00075:mRNA_11.1C_unshiu_00075123779124531Hypothetical proteinAGI-0162.570KmG-0146.353JtR-01S106.811NAT-01S77.905
Bf0011 AAvailable marker O---OOSI218TP Ciclev10008900mscaffold_147228894726339J C_unshiu_00547:mRNA_9.1C_unshiu_005475455657654NADH-cytochrome b5 reductaseAGI-0167.331RP-0123.653
Al0639 AAvailable marker O---OOTP Ciclev10001091mscaffold_54170378741708779J C_unshiu_00009:mRNA_141.1C_unshiu_00009874868888901IQ calmodulin-binding motif proteinAGI-0170.494KmG-0148.992JtR-01S110.675NAT-01S94.639RP-0128.746
Cp0741 AAvailable marker O---OOTP Ciclev10008230mscaffold_137468643749903J C_unshiu_00055:mRNA_22.1C_unshiu_00055168281172005FerrochelataseAGI-0175.964
Al0014 O-----SI058,SI153,SI312TP Ciclev10008225mscaffold_110703731072218J C_unshiu_00005:mRNA_43.1C_unshiu_00005281165283012CBL-interacting serine/threonine-protein kinase 20AGI-0197.525RP-013.295
Cp0672 ------TP Ciclev10007769mscaffold_12826220228267878J C_unshiu_00005:mRNA_26.1C_unshiu_00005170218174432Putative eukaryotic translation initiation factor 4 gammaAGI-01101.472
Wy0055Wy0055.em ------J C_unshiu_00005:mRNA_81.1C_unshiu_00005686926696896NeurochondrinAGI-01118.691
Gn0097 ------TP Ciclev10005133mscaffold_91024623910248409J C_unshiu_00372:mRNA_8.1C_unshiu_003727703979209Naringenin-chalcone synthaseAGI-02
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Tf0196 ------TP Ciclev10025815mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinAGI-024.033
Cp1111 MDisagree by Marco analysis ------TP Ciclev10024860mscaffold_786034508610239J C_unshiu_00290:mRNA_28.1C_unshiu_00290241335248051Cell division protein ftsH, putative isoform 1AGI-025.054
Tf0067 OOthers O-----SI033,SI187TP Ciclev10025950mscaffold_784387028442381J C_unshiu_00290:mRNA_9.1C_unshiu_002907419477624Transcription factorAGI-025.104
Bf0142 O-----TP Ciclev10024891mscaffold_785088378516759J C_unshiu_00290:mRNA_16.1C_unshiu_00290151884158772Class III homeodomain leucine zipper proteinAGI-025.104
Cp1852 ------TP Ciclev10010530mscaffold_12271166822715696J C_unshiu_00103:mRNA_19.2C_unshiu_00103116559121057Cell differentiation protein rcd1AGI-029.592
Tf0172 O-----TP Ciclev10026400mscaffold_799766219980176J C_unshiu_00496:mRNA_5.1C_unshiu_004964806950951Auxin-induced protein IAA6AGI-0210.638
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Em0004Fb1532.em ------TP Ciclev10015815mscaffold_21158569911587422J C_unshiu_01211:mRNA_9.1C_unshiu_012116775669149Transparent testa glabra 1AGI-0211.835
Vt0030Vt0030.k O-----TP Ciclev10024917mscaffold_71127170511277014J C_unshiu_01240:mRNA_4.1C_unshiu_012402765532960Phospholipase DAGI-0212.615
Cp1791 Bno homozygous cultivar with minor allele ------TP Ciclev10027428mscaffold_71160446411607028J C_unshiu_00582:mRNA_4.1C_unshiu_005821006711470NBS-LRR type disease resistance proteinAGI-0212.969
Af1100 ------TP Ciclev10026703mscaffold_71085348710855215J C_unshiu_00451:mRNA_17.1C_unshiu_00451120744122474Ran BP2/NZF zinc finger-like superfamily protein isoform 1AGI-0213.326
Ks9005 AAvailable marker O---OOSI342TP Ciclev10015338mscaffold_2290799294122J C_unshiu_00109:mRNA_36.1C_unshiu_00109219070222359TRNA-splicing ligase RtcBAGI-0213.646KmG-0223.647RP-0216.986
Cp0100 O-----TP Ciclev10024866mscaffold_71047113610474241J C_unshiu_00924:mRNA_4.1C_unshiu_009245026952902Tetratricopeptide repeat-like superfamily proteinAGI-0214.111
Wy0060Wy0060.em ------TP Ciclev10020776mscaffold_34699874547002683J C_unshiu_00023:mRNA_2.1C_unshiu_00023712911067Pto kinase interactor 1AGI-0214.597
Al0037 ------TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Al0037.2Al0037.k O-----TP Ciclev10026259mscaffold_71431010014311942J C_unshiu_02045:mRNA_3.1C_unshiu_020451741419393CCR4-NOT transcription complex subunit 7AGI-0215.816
Gmom24 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1AGI-0219.971
Lp0004 OOthers ------TP Ciclev10026144mscaffold_71537681815378771J C_unshiu_00703:mRNA_1.1C_unshiu_0070327934693C6HC-type zinc finger RING/U-box proteinAGI-0220.292KmG-0215.368RP-0211.119
Tf0454 AAvailable marker O---OOTP Ciclev10027306mscaffold_71610872316113463J C_unshiu_00371:mRNA_10.1C_unshiu_00371121418127245GATA transcription factorAGI-0221.099
Cp0114 ------TP Ciclev10027515mscaffold_71544626915449214J C_unshiu_01960:mRNA_1.1C_unshiu_0196014004642DS12 from 2D-PAGE of leaf protein, putativeAGI-0221.337
Af3023 ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putativeAGI-0221.337
Tf0125 ------TP Ciclev10025501mscaffold_71624952316255343J C_unshiu_01042:mRNA_11.1C_unshiu_010428657791963Ubiquitin-specific protease family C19 proteinAGI-0221.337
Af1207 ------TP Ciclev10025335mscaffold_71560506515607345J C_unshiu_00628:mRNA_20.1C_unshiu_00628144683146646Flavonoid 3'-monooxygenaseAGI-0221.344
Af1003 O-----TP Ciclev10001093mscaffold_51560585215610028J C_unshiu_00533:mRNA_20.1C_unshiu_00533131430141111Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrialAGI-0222.436
Gmom29 ------TP Ciclev10000654mscaffold_51267741412680761J C_unshiu_00578:mRNA_7.1C_unshiu_005787744680730Putative WRKY transcription factor 33AGI-0222.436
Cp2232 AAvailable marker ----OOTP Ciclev10002687mscaffold_51780952317810742J C_unshiu_01815:mRNA_5.1C_unshiu_018152859329777Photosystem I reaction center subunit NAGI-0222.436
Tf0147 ------TP Ciclev10001956mscaffold_51576493715766976J C_unshiu_00293:mRNA_8.1C_unshiu_00293104196105925NAC transcription factorAGI-0222.436
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Vt0032 O-----SI024TP Ciclev10024737mscaffold_71790148717905433J C_unshiu_00382:mRNA_15.1C_unshiu_00382163577167662Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1AGI-0225.601RP-026.081
Mf0090 AAvailable marker -O--OOTP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.869KmG-0211.182JtR-023.182RP-028.191
Vs0006 ULess informative for main cultivars ------TP Ciclev10025343mscaffold_71902429519026021J C_unshiu_00468:mRNA_22.1C_unshiu_00468132124133922Cytochrome P450 78A4AGI-0227.491JtR-0250.216NAT-02S3.328
Fb0365 O-----SI036,SI320TP Ciclev10026391mscaffold_72087246220874659J C_unshiu_00098:mRNA_41.1C_unshiu_00098264947272086Hypothetical proteinAGI-0231.596KmG-02JtR-02-4.953
Ov0015 OOthers O-----SI304TP Ciclev10026223mscaffold_782550468256442J C_unshiu_02827:mRNA_2.1C_unshiu_028271598617224Stem 28 kDa glycoproteinAGI-0234.494KmG-0235.126JtR-0219.319
Fb0133 ------J C_unshiu_00195:mRNA_19.1C_unshiu_00195140861146843Hypothetical proteinAGI-0239.589KmG-021.175JtR-021.082
Af1043 ------TP Ciclev10026060mscaffold_72004993620052008J C_unshiu_00519:mRNA_19.1C_unshiu_00519110187111261Ribonucleoside-diphosphate reductase subunit M2AGI-0244.231
Tf0319 ------SI152TP Ciclev10026319mscaffold_768726666877291J C_unshiu_00166:mRNA_10.1C_unshiu_001667878083374Putative PHD finger protein ALFIN-LIKE 4-likeAGI-0244.258
Fb0233 O-----SI025,SI079,SI169TP Ciclev10025557mscaffold_765355226540965J C_unshiu_00437:mRNA_15.1C_unshiu_00437131524136642WD-40 repeat-containing protein MSI4AGI-0247.382
Gn0004 ------TP Ciclev10026028mscaffold_760115236014015J C_unshiu_00696:mRNA_14.1C_unshiu_00696122646125456Flavonol synthaseAGI-0249.699KmG-0238.471JtR-0215.126
Cp1736 ------TP Ciclev10026179mscaffold_756400585643125J C_unshiu_00761:mRNA_15.2C_unshiu_007618999192755Protein CbbYAGI-0250.716
Al0409 Bno homozygous cultivar with minor allele O-----SI201,SI252TP Ciclev10024949mscaffold_750425085046271NoAGI-0250.758KmG-0244.930JtR-0229.462NAT-02S90.742
Al0621 Bno homozygous cultivar with minor allele O-----TP Ciclev10025875mscaffold_745755034577125J C_unshiu_00656:mRNA_8.1C_unshiu_006563294034329Hypothetical proteinAGI-0260.566KmG-0247.196JtR-0228.472
Lp0126 AAvailable marker O---OOTP Ciclev10025164mscaffold_739468183949964J C_unshiu_00801:mRNA_10.1C_unshiu_0080197228100216Phototropic-responsive NPH3 family proteinAGI-0265.295KmG-0254.892JtR-0226.278RP-02.2
Tf0259 AAvailable marker O---OOTP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0267.666
Mf0094 AAvailable marker ----OOTP Ciclev10026594mscaffold_737213753722616J C_unshiu_00169:mRNA_29.1C_unshiu_00169217948219072Maternal effect embryo arrest proteinAGI-0267.666KmG-0252.124JtR-0225.334
Gn0068 ------TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticAGI-0268.446RP-02.29.814
Af1379 ------TP Ciclev10026357mscaffold_734561053460607J C_unshiu_00301:mRNA_21.2C_unshiu_00301134429138770CBS domain-containing protein CBSX1, chloroplasticAGI-0268.467
Tf0326 AAvailable marker OO-OOOSI085TP Ciclev10024695mscaffold_725015202509737J C_unshiu_02417:mRNA_1.1C_unshiu_02417369211684Histone-lysine N-methyltransferase SUVR5AGI-0269.928
Cp1716 AAvailable marker ----OOTP Ciclev10026303mscaffold_726076702609433J C_unshiu_00025:mRNA_77.1C_unshiu_00025553145554831Thiol disulfide interchange proteinAGI-0270.068
Cp1085 ------TP Ciclev10025935mscaffold_723900102391658J C_unshiu_00025:mRNA_42.1C_unshiu_00025337060338142Putative geranylgeranyl pyrophosphate synthase 3-likeAGI-0270.082
Vt0015 ------TP Ciclev10025952mscaffold_724414522443391J C_unshiu_00025:mRNA_49.1C_unshiu_00025381829383760HexosyltransferaseAGI-0270.082KmG-0267.054JtR-0221.082
Cp2263 AAvailable marker ----OOTP Ciclev10026034mscaffold_725863842588513J C_unshiu_00025:mRNA_69.1C_unshiu_00025530588532071Hypothetical proteinAGI-0270.082
Bf0128 O-----TP Ciclev10025298mscaffold_733232693331038J C_unshiu_00051:mRNA_2.2C_unshiu_000512587240163Hypothetical proteinAGI-0270.082NAT-02S77.157RP-02.29.835
Fb0227 ------TP Ciclev10026002mscaffold_729380592940407J C_unshiu_00084:mRNA_42.1C_unshiu_00084428180435326Phospholipase, patatin familyAGI-0270.082RP-02.212.696
Tf0020 ------SI154TP Ciclev10026414mscaffold_722894552291216J C_unshiu_00025:mRNA_31.1C_unshiu_00025258446260200Homeobox leucine zipper proteinAGI-0271.294
Tf0357 ------SI018TP Ciclev10025390mscaffold_722467322249558J C_unshiu_01055:mRNA_7.1C_unshiu_010556061463050Zinc finger protein JACKDAWAGI-0271.294
Lp0118 MDisagree by Marco analysis ------J C_unshiu_00008:mRNA_8.1C_unshiu_000084636354318Protein trichome birefringence-like 33AGI-0273.759KmG-0275.522JtR-0224.745
Af1619 ------TP Ciclev10026784mscaffold_716086341610659J C_unshiu_00209:mRNA_18.2C_unshiu_00209147009148975Thioredoxin hAGI-0273.759
If0010 AAvailable marker O---O-TP Ciclev10026308mscaffold_712649651266960J C_unshiu_00218:mRNA_11.1C_unshiu_00218634036501860S ribosomal protein L8AGI-0273.759KmG-0276.687JtR-0210.849NAT-02S71.041
If0210 ------SI042TP Ciclev10012145mscaffold_62103591021038368J C_unshiu_00052:mRNA_38.1C_unshiu_00052265461267883Fructose-bisphosphate aldolase, cytoplasmic isozymeAGI-0273.759
Cp1697 AAvailable marker ----OOTP Ciclev10028645mscaffold_8966124968846J C_unshiu_00041:mRNA_89.1C_unshiu_00041555334558046Urease accessory protein UreHAGI-0273.770
Af2893 ------TP Ciclev10025356mscaffold_717394431743149J C_unshiu_01334:mRNA_6.1C_unshiu_013342586329359Putative mitochondrial chaperone BCS1-BAGI-0273.779
Lp0024 HDisagree on Clementine haploid genotype O-----SI010,SI302TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QAGI-0274.555RP-02.217.330
Fb0995 OOthers O-----SI026TP Ciclev10024677mscaffold_711800191202408J C_unshiu_00544:mRNA_10.1C_unshiu_0054497318121662FAT domain-containing proteinAGI-0274.555KmG-0282.954JtR-0210.215
Wy0041 ------TP Ciclev10025903mscaffold_712958391297378J C_unshiu_00218:mRNA_18.1C_unshiu_002189307494183GDP-mannose 4,6 dehydratase 2AGI-0275.406
Lp0105 Bno homozygous cultivar with minor allele O-----SI113,SI163,SI254TP Ciclev10026412mscaffold_7815904817239J C_unshiu_00353:mRNA_13.1C_unshiu_003539203393437Hypothetical proteinAGI-0275.939
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
If0223 AAvailable marker ----OONoAGI-0276.168KmG-0743.554JtR-0213.208NAT-02S71.420
Gn0101 ------TP Ciclev10025706mscaffold_7662802667420J C_unshiu_00353:mRNA_30.1C_unshiu_00353203269207136Protein MID1-COMPLEMENTING ACTIVITY 1AGI-0277.881
Tf0026 O-----SI111,SI288TP Ciclev10025369mscaffold_7285299292550J C_unshiu_00312:mRNA_28.1C_unshiu_00312151229158232UbiquilinAGI-0278.531
Tf0032 AAvailable marker O---OOTP Ciclev10026014mscaffold_79415597631J C_unshiu_00706:mRNA_8.1C_unshiu_007065152554837AT-hook motif nuclear-localized protein 10AGI-0278.531
Wy0062Wy0062.em ------TP Ciclev10011305mscaffold_61521496915222324J C_unshiu_00034:mRNA_76.1C_unshiu_00034634791641934Peptidyl-prolyl cis-trans isomerase PASTICCINO1AGI-0278.531
Al0627 HDisagree on Clementine haploid genotype O-----TP Ciclev10025602mscaffold_7128539131642J C_unshiu_00706:mRNA_3.1C_unshiu_007061659018098Trigalactosyldiacylglycerol 1 isoform 1AGI-0278.531
Ov0306 OOthers ------SI382TP Ciclev10026199mscaffold_7224443227133NoAGI-0279.663KmG-0272.516JtR-028.671NAT-02S60.000
Tf0221 ------SI057,SI225TP Ciclev10025996mscaffold_7490750492882J C_unshiu_00488:mRNA_7.1C_unshiu_004884481348259Ankyrin repeat domain-containing protein, chloroplasticAGI-0281.212
Fb1430Fb1430.lg O-----TP Ciclev10005994mscaffold_918796751880523J C_unshiu_00102:mRNA_3.1C_unshiu_00102165071733460S ribosome subunit biogenesis protein NIP7 homologAGI-03
Tf0106 ------TP Ciclev10006161mscaffold_911280461129318J C_unshiu_00007:mRNA_6.1C_unshiu_000074959950702GATA transcription factor 15AGI-037.674
Bf0005 ------SI194TP Ciclev10005100mscaffold_9465444468143J C_unshiu_00007:mRNA_115.1C_unshiu_00007710354712926Phosphatase 2C family proteinAGI-038.177
Cp0996 Bno homozygous cultivar with minor allele ------SI340TP Ciclev10004474mscaffold_9543444546746J C_unshiu_00007:mRNA_105.1C_unshiu_00007630727633783Neutral/alkaline invertaseAGI-039.366
Tf0140 ------TP Ciclev10004457mscaffold_9225971232459J C_unshiu_00007:mRNA_144.1C_unshiu_00007929895935477Squamosa promoter-binding-like protein 1AGI-039.830
Gmom26 ------TP Ciclev10005911mscaffold_9713868716708J C_unshiu_00007:mRNA_76.1C_unshiu_00007473625476336Prefoldin subunit 3AGI-0310.918
Tf0275 AAvailable marker O---OOTP Ciclev10006256mscaffold_9955176957425J C_unshiu_00249:mRNA_31.1C_unshiu_00249191274194861Transposon protein, putative, Mutator sub-classAGI-0311.501
Cp1523 AAvailable marker ----OOTP Ciclev10005519mscaffold_913567581359310J C_unshiu_01431:mRNA_7.1C_unshiu_014313151837086Hypothetical proteinAGI-0312.606
Mf0047 DDominant marker ------TP Ciclev10006308mscaffold_916854071687081J C_unshiu_00036:mRNA_24.2C_unshiu_00036126753128428Late embryogenesis abundant protein Lea5-DAGI-0314.323KmG-0317.139NAT-0350.708
Lp0208 ------TP Ciclev10018482mscaffold_34570436145713084J C_unshiu_00326:mRNA_24.1C_unshiu_00326146528154002ABC transporter C family member 3AGI-0315.136NAT-0328.397
Af1415 ------TP Ciclev10005717mscaffold_926031342605405J C_unshiu_00366:mRNA_20.1C_unshiu_00366130993132913Transmembrane BAX inhibitor motif-containing protein 4AGI-0316.667
Al0419 OOthers O-----TP Ciclev10005894mscaffold_924528532455181J C_unshiu_00394:mRNA_25.1C_unshiu_00394150531152208Hypothetical proteinAGI-0317.378KmG-099.593JtR-09S7.976
Af1177 ------TP Ciclev10005989mscaffold_921683872170546J C_unshiu_00085:mRNA_13.1C_unshiu_000857834180308CASP-like protein 1E1AGI-0318.579
Cp1031 AAvailable marker -O--OOTP Ciclev10005224mscaffold_923243132328666J C_unshiu_00394:mRNA_4.1C_unshiu_003941197016480Putative E3 ubiquitin-protein ligase MARCH10AGI-0318.610
Fb0827 O-----SI215,SI301TP Ciclev10004432mscaffold_923534422357780J C_unshiu_00394:mRNA_9.1C_unshiu_003944171945690Chloroplast 1-deoxy-D-xylulose-5-phosphate synthaseAGI-0319.017KmG-03116.544JtR-034
Fb1227 ------TP Ciclev10004375mscaffold_933677183376062J C_unshiu_00051:mRNA_60.1C_unshiu_00051463042471084Chloride channel proteinAGI-0319.631
Cp1923 OOthers ------TP Ciclev10005293mscaffold_929463012950297J C_unshiu_00097:mRNA_22.1C_unshiu_00097195825199499UPF0613 protein PB24D3.06cAGI-0322.454
Lp0202 O-----TP Ciclev10006509mscaffold_931310063134438J C_unshiu_00051:mRNA_31.2C_unshiu_00051239802243699NEDD8-activating enzyme E1 catalytic subunitAGI-0323.085
Cp1925 AAvailable marker ----OOTP Ciclev10005182mscaffold_931159713120271J C_unshiu_00051:mRNA_29.1C_unshiu_00051224928229203YjeF family domain-containing proteinAGI-0324.457
Al0415 AAvailable marker ----OOSI120,SI310TP Ciclev10004660mscaffold_927329002738896J C_unshiu_00040:mRNA_76.1C_unshiu_00040632823638463Mitogen-activated protein kinase 14AGI-0324.885KmG-031NAT-0341.576
Af1638 ------TP Ciclev10004755mscaffold_92898497228989373J C_unshiu_00045:mRNA_79.1C_unshiu_00045556440562091TubulinAGI-0334.554
Tf0072 ------TP Ciclev10005403mscaffold_92875727428759075J C_unshiu_00045:mRNA_48.1C_unshiu_00045372168373811Heat stress transcription factor B-4AGI-0335.962
Tf0074 O-----TP Ciclev10005366mscaffold_92844451228446074J C_unshiu_00045:mRNA_7.1C_unshiu_000456260863842TCP family transcription factorAGI-0337.816
Ov0512 OOthers O-----TP Ciclev10006241mscaffold_92719850827199642J C_unshiu_00433:mRNA_19.1C_unshiu_00433116730118286Small heat shock proteinAGI-0340.361KmG-03225.743JtR-031NAT-03
Bf0130 ------SI063,SI188TP Ciclev10004858mscaffold_92698149826984277J C_unshiu_00095:mRNA_24.1C_unshiu_00095228406230902F-box family protein isoform 1AGI-0340.452
Cp0106 MDisagree by Marco analysis ------TP Ciclev10020606mscaffold_31186776511869679J C_unshiu_00741:mRNA_6.1C_unshiu_007414498955203Wall associated kinase-like 6, putativeAGI-0340.566
Wy0020 ------SI007TP Ciclev10005394mscaffold_955491955553148J C_unshiu_00164:mRNA_5.1C_unshiu_001641704620923Malate dehydrogenaseAGI-0343.563
Cp0018 ------TP Ciclev10005068mscaffold_956054705610840J C_unshiu_00057:mRNA_49.1C_unshiu_00057415460428173Putative E3 ubiquitin-protein ligase HERC1AGI-0344.848
Af3822 ------TP Ciclev10004695mscaffold_954942545497030J C_unshiu_00164:mRNA_13.1C_unshiu_001647405975936Phosphate transporterAGI-0344.864
Wy0032 OOthers O---OOTP Ciclev10005365mscaffold_91035708410359834J C_unshiu_00367:mRNA_10.1C_unshiu_00367100255102997Male sterility MS5 family proteinAGI-0346.121KmG-03214.572JtR-03112.840
Al0413 AAvailable marker ---OOOSI275,SI299TP Ciclev10004620mscaffold_975799007583093J C_unshiu_00063:mRNA_61.1C_unshiu_00063483279486427Chloroplast beta-amylase 3AGI-0346.197KmG-03219.570JtR-03110.395RP-0333.559
Bf0229 ------SI253TP Ciclev10004848mscaffold_91724221817245901J C_unshiu_00122:mRNA_16.1C_unshiu_00122118693122329Selenium binding proteinAGI-0346.274RP-0337.885
Af1017 O-----TP Ciclev10006402mscaffold_92267155422672639NoAGI-0346.274
Tf0205 OOthers O-----SI274TP Ciclev10005062mscaffold_91638385116393557J C_unshiu_00094:mRNA_29.1C_unshiu_00094262934272307UBX domain-containing protein 1AGI-0346.274
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Gn0008 OOthers ------SI176TP Ciclev10005632mscaffold_91778963417793258J C_unshiu_00098:mRNA_1.1C_unshiu_00098512017442Phytoene desaturaseAGI-0346.274
Cp1500 ------TP Ciclev10004776mscaffold_970802497086989J C_unshiu_00161:mRNA_19.1C_unshiu_001611505191572063-isopropylmalate dehydratase large subunitAGI-0346.274
Gn0067 OOthers O-----SI204,SI349TP Ciclev10004730mscaffold_92272831022730086J C_unshiu_00295:mRNA_17.1C_unshiu_00295207257208985Lycopene beta-cyclaseAGI-0346.274
Tf0071 ------SI084,SI146TP Ciclev10022102mscaffold_32661074726612959J C_unshiu_00167:mRNA_6.1C_unshiu_001675730062494HAUS augmin-like complex subunitAGI-0346.274
Tf0117 ------TP Ciclev10005596mscaffold_91510737515113804J C_unshiu_00170:mRNA_11.1C_unshiu_001709120597326Myb family transcription factor APLAGI-0346.274
Fb0219 ------TP Ciclev10031436mscaffold_42115379121158006J C_unshiu_00010:mRNA_101.1C_unshiu_00010718703722812F-box only protein 6AGI-0346.274
Af1498 ------TP Ciclev10006723mscaffold_967663496768025J C_unshiu_00307:mRNA_26.2C_unshiu_00307212314218407Heterogeneous nuclear ribonucleoprotein 1AGI-0346.274
Af1456 ------TP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28AGI-0346.298
Cp1034 AtAvailable marker ----OOTP Ciclev10005575mscaffold_92110789421109983J C_unshiu_00160:mRNA_22.1C_unshiu_00160182942184946Putative calcium-binding protein CML48AGI-0346.760
Al0011Al0010.2 ------TP Ciclev10012654mscaffold_61031699910318328J C_unshiu_00806:mRNA_1.2C_unshiu_008062130522892PolyubiquitinAGI-0346.768
Cp1334 MDisagree by Marco analysis ------J C_unshiu_01048:mRNA_12.1C_unshiu_010488738690179Phosphoribosylformylglycinamidine cyclo-ligaseAGI-0346.968
Cp0933 OOthers ------TP Ciclev10019734mscaffold_34982190649825730J C_unshiu_00014:mRNA_26.1C_unshiu_00014159299162719Hypothetical proteinAGI-0347.283
Bf0221 ------TP Ciclev10005970mscaffold_92419518024198282J C_unshiu_00132:mRNA_22.1C_unshiu_00132211597223530Hypothetical proteinAGI-0347.887RP-0337.193
Bf0020 ------TP Ciclev10005107mscaffold_92518520025188839J C_unshiu_00119:mRNA_25.1C_unshiu_00119238437248656Guanylate kinaseAGI-0347.887RP-0337.189
Al0302 AAvailable marker -O--OOSI090,SI311TP Ciclev10004372mscaffold_92507369325080376J C_unshiu_00119:mRNA_33.1C_unshiu_00119346131352710Putative seed imbibition proteinAGI-0348.375KmG-03218.339JtR-033NAT-033.773RP-0336.113
Tf0219 Bno homozygous cultivar with minor allele O-----SI076,SI267TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0349.250
Tf0423 ------TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0350.361
Ov0013 OOthers ------TP Ciclev10005251mscaffold_91805838718060752J C_unshiu_00556:mRNA_14.1C_unshiu_00556103101105466Caffeic acid 3-O-methyltransferaseAGI-0350.691KmG-03218.852JtR-03111.918RP-0338.986
Af1414 ------TP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorAGI-0350.895
Cp0185 ------TP Ciclev10002024mscaffold_53455836234564638J C_unshiu_00190:mRNA_33.1C_unshiu_00190230947237587Adenine phosphoribosyltransferaseAGI-0351.129
Ov0027Ov0027.em ------TP Ciclev10009797mscaffold_184171588419377J C_unshiu_00584:mRNA_9.1C_unshiu_00584740897626660S ribosomal protein L28AGI-0351.749
Bf0171 ------SI381TP Ciclev10006006mscaffold_941163564117315J C_unshiu_00101:mRNA_25.1C_unshiu_00101280469282533Early light-induced protein, chloroplasticAGI-0352.548
Af1700 ------TP Ciclev10004322mscaffold_91850229318505531J C_unshiu_00138:mRNA_34.1C_unshiu_00138182719186200Putative receptor protein kinase TMK1AGI-0354.060
Bf1182.2 ------NoAGI-0356.391
Bf0004 ------SI273TP Ciclev10005212mscaffold_92956300329568705J C_unshiu_00056:mRNA_33.1C_unshiu_00056220997225323Pentatricopeptide repeat superfamily protein, putative isoform 1AGI-0358.312
Fb0329 ------TP Ciclev10004180mscaffold_92923783829242883J C_unshiu_00606:mRNA_2.1C_unshiu_006061369318703Methyltransferase MT-A70 family protein isoform 1AGI-0360.686
Al0001 ------J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0362.228JtR-03117.616
Af1586 ------TP Ciclev10005733mscaffold_92311950223122347J C_unshiu_00148:mRNA_17.1C_unshiu_00148145165147922Glycoprotein family proteinAGI-0363.545
Af1513 ------TP Ciclev10006024mscaffold_92952378629526379J C_unshiu_00056:mRNA_24.1C_unshiu_0005618128218315140S ribosomal protein S10AGI-0363.545
Tf0143 ------SI127TP Ciclev10004758mscaffold_93004045730044615J C_unshiu_00134:mRNA_22.1C_unshiu_00134203848206784Sigma factorAGI-0368.846
Ov0109 MDisagree by Marco analysis O-----SI172,SI202TP Ciclev10004309mscaffold_93051333330517676J C_unshiu_00003:mRNA_13.1C_unshiu_00003122283126575Elongation factor 2AGI-0371.060JtR-03213.729RP-0371.532
Fb0708 ------TP Ciclev10005455mscaffold_93123708931243737J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0374.195JtR-03219.857
Af1589 ------TP Ciclev10005524mscaffold_93099512930999295J C_unshiu_00003:mRNA_80.1C_unshiu_00003574672576940Peroxisomal 2,4-dienoyl-CoA reductaseAGI-0377.744
Tf0292 OOthers O-----TP Ciclev10006112mscaffold_93113978931143240J C_unshiu_00003:mRNA_98.2C_unshiu_00003698480711976Protein strawberry notchAGI-0377.793
Bf0150 ------SI316,SI370TP Ciclev10004834mscaffold_93101883631027361J C_unshiu_00003:mRNA_85.1C_unshiu_00003596288610960Aldehyde dehydrogenaseAGI-0377.920RP-0377.748
Tf0022 MDisagree by Marco analysis O-----SI116TP Ciclev10005681mscaffold_93123708931243866J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0378.631
Cp0336 ------TP Ciclev10004655mscaffold_93124444031250356J C_unshiu_00003:mRNA_113.1C_unshiu_00003809668815079ABC transporter D family member 2, chloroplasticAGI-0379.515
Af1332 ------TP Ciclev10013051mscaffold_62083442720836151J C_unshiu_00052:mRNA_57.1C_unshiu_0005245595945768460S acidic ribosomal proteinAGI-04
Wy0029 ------TP Ciclev10012640mscaffold_62114570321148279J C_unshiu_00052:mRNA_26.1C_unshiu_00052161014162179Type II peroxiredoxinAGI-04
Gn0066.2 HDisagree on Clementine haploid genotype O-----TP Ciclev10011230mscaffold_61957817919583475J C_unshiu_00043:mRNA_12.1C_unshiu_000439021294791Carotenoid isomeraseAGI-04
Af1499 ------TP Ciclev10011169mscaffold_62190555721908832J C_unshiu_00079:mRNA_39.1C_unshiu_00079273228275864BZIP transcription factor family proteinAGI-04
Af1508 ------TP Ciclev10011580mscaffold_62198304421991500J C_unshiu_00079:mRNA_48.1C_unshiu_00079328854336213Stomatal closure-related actin-binding protein 3AGI-041.342
Af1600 ------TP Ciclev10013134mscaffold_62275802722760875J C_unshiu_00038:mRNA_51.4C_unshiu_00038305110307864Negatively light-regulated proteinAGI-045.122
Af1639 ------TP Ciclev10012116mscaffold_62346248723466580J C_unshiu_00098:mRNA_36.1C_unshiu_00098239683243712Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1AGI-046.635
Tf0286 DDominant marker O-----TP Ciclev10011556mscaffold_62500158625004619J C_unshiu_01279:mRNA_6.1C_unshiu_012794322246082Dof zinc finger protein DOF5.2AGI-0432.710
Af1443 ------TP Ciclev10011413mscaffold_62504839825053494J C_unshiu_00009:mRNA_3.1C_unshiu_000091576528846Pentatricopeptide repeat-containing family proteinAGI-0433.808
Ov0118 AAvailable marker O---OOSI357TP Ciclev10001621mscaffold_53429485334297359J C_unshiu_03047:mRNA_1.1C_unshiu_0304714183450Dihydrodipicolinate synthaseAGI-0434.838KmG-0936.138JtR-09S72.673NAT-0955.867
Tf0050 ------SI104,SI346TP Ciclev10012152mscaffold_62487484024876388J C_unshiu_00135:mRNA_12.1C_unshiu_001358426085810Myb-related protein 306AGI-0436.106
Tf0364 AAvailable marker O---OOTP Ciclev10011266mscaffold_62460650124612654J C_unshiu_00135:mRNA_49.1C_unshiu_00135338118344273FACT complex subunit SSRP1AGI-0437.102
Af1462 ------TP Ciclev10012884mscaffold_62427403124276658J C_unshiu_00133:mRNA_50.1C_unshiu_00133274230284897Hypothetical proteinAGI-0437.527
Al0313 AAvailable marker O---OOTP Ciclev10011272mscaffold_62396603923969583J C_unshiu_00133:mRNA_4.2C_unshiu_001332248526003Putative phosphatidylinositol 4-kinase type 2-betaAGI-0438.152KmG-049.748
Tf0254 Bno homozygous cultivar with minor allele O-----TP Ciclev10010885mscaffold_62391687623939827J C_unshiu_00253:mRNA_3.1C_unshiu_002531464720586Hypothetical proteinAGI-0438.226
Vt0009 ------TP Ciclev10012382mscaffold_62493248124935909J C_unshiu_00135:mRNA_6.1C_unshiu_001352589128913Major intrinsic protein (MIP) family transporterAGI-0438.770KmG-0414.707
Ov0513 OOthers O-----TP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00009:mRNA_59.1C_unshiu_00009325807333424Hypothetical proteinAGI-0438.903KmG-045.110RP-0460.491
Gn0051 AAvailable marker ----OOSI306,SI366TP Ciclev10011780mscaffold_62408226324084635J C_unshiu_00133:mRNA_13.1C_unshiu_001336387065165Protein UNUSUAL FLORAL ORGANSAGI-0439.510KmG-040.447
Tf0397 ------SI008TP Ciclev10013334mscaffold_62365725623657810J C_unshiu_00098:mRNA_65.1C_unshiu_00098441975442704Ocs element-binding factor 1AGI-0440.646
Tf0386 AAvailable marker OOO-OOSI044,SI095TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 proteinAGI-0441.367
Cp0085 O-----TP Ciclev10012552mscaffold_62336430323366061J C_unshiu_00098:mRNA_21.1C_unshiu_00098143026144827Allene oxide cyclaseAGI-0442.183
Cp2026 AAvailable marker ----OOTP Ciclev10011534mscaffold_62350649123509585J C_unshiu_00098:mRNA_44.1C_unshiu_00098286004289150Tryptophan synthase, beta subunitAGI-0443.239
Af1059 ------TP Ciclev10011827mscaffold_62306638423072168J C_unshiu_00038:mRNA_98.1C_unshiu_00038554982560549Plastidic glucose transporter 4AGI-0444.840
Al0304 MDisagree by Marco analysis ------SI259,SI293TP Ciclev10013536mscaffold_62261697922619271J C_unshiu_00038:mRNA_27.1C_unshiu_00038174815175255Nutrient reservoir, putativeAGI-0446.361KmG-0416.744NAT-04RP-0454.617
Bf0008 ------SI309TP Ciclev10012950mscaffold_62246756522470029J C_unshiu_00038:mRNA_5.1C_unshiu_000384098343503Pollen-specific C2 domain containing proteinAGI-0447.391RP-0450.862
Tf0056 AAvailable marker O---OOSI061,SI137TP Ciclev10012265mscaffold_62230592222308021J C_unshiu_00252:mRNA_6.1C_unshiu_002524863249537Myb domain protein 42AGI-0449.225
Cp0415 ------TP Ciclev10011681mscaffold_62221354422219300J C_unshiu_00074:mRNA_13.1C_unshiu_000748130186950ATA15 proteinAGI-0450.134
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Cp1361 AAvailable marker ----OOTP Ciclev10013042mscaffold_62171471621717652J C_unshiu_01167:mRNA_14.1C_unshiu_01167790368180850S ribosomal 5 alpha, chloroplasticAGI-0452.740
Gmom19 ------TP Ciclev10011554mscaffold_62145081121454133J C_unshiu_00037:mRNA_27.1C_unshiu_00037166873170276Protein CCA1AGI-0454.804
Ov0020 AAvailable marker O---OOSI055,SI143,SI213TP Ciclev10011842mscaffold_62159842921600967J C_unshiu_00037:mRNA_7.2C_unshiu_000373771940241Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclaseAGI-0455.145KmG-0422.465NAT-043.806RP-0440.905
Gn0009 AAvailable marker ----OOAGI-0457.369KmG-0427.843
Lp0206 O-----TP Ciclev10011764mscaffold_62083650920840107J C_unshiu_00052:mRNA_56.1C_unshiu_00052452105455631Monodehydroascorbate reductaseAGI-0458.655
Cp0813 ------SI047TP Ciclev10011980mscaffold_62063804920641557J C_unshiu_00046:mRNA_46.1C_unshiu_00046406041409549Alpha/beta fold hydrolaseAGI-0458.655
Mf0092 AAvailable marker ----OOSI138TP Ciclev10012056mscaffold_62113778321142157J C_unshiu_00052:mRNA_27.2C_unshiu_00052168316172622Phosphopyruvate hydrataseAGI-0459.190KmG-0430.795NAT-0411.576
Cp1798 AAvailable marker ----OOTP Ciclev10012134mscaffold_62031967720323198J C_unshiu_00215:mRNA_34.1C_unshiu_00215205164208490Orange 2AGI-0460.291
Tf0373 ------SI088TP Ciclev10011502mscaffold_62122981321233537J C_unshiu_00037:mRNA_60.1C_unshiu_00037387538391239Uridylate kinase, putativeAGI-0461.716
Bf0148 ------TP Ciclev10012535mscaffold_62013311820134805NoAGI-0462.325NAT-0412.575
Ks9010 AAvailable marker ----OOTP Ciclev10007188mscaffold_92946086629463385J C_unshiu_00056:mRNA_15.1C_unshiu_00056116304118823Receptor-like protein kinase HERK 1AGI-0462.499KmG-0439.019
Wy0048Wy0048.k ------TP Ciclev10010999mscaffold_61990023519904192J C_unshiu_00043:mRNA_54.1C_unshiu_00043424252427984Putative receptor protein kinase TMK1AGI-0463.371NAT-0421.157
Al0625 AAvailable marker O---OOSI329J C_unshiu_00139:mRNA_45.1C_unshiu_00139346138349862Regulator of chromosome condensation family proteinAGI-0466.455RP-0423.717
Tf0075 ------SI059,SI248TP Ciclev10010972mscaffold_61914230719156510J C_unshiu_00089:mRNA_11.1C_unshiu_00089108874122025Homoserine kinaseAGI-0466.455
Ov0117 AAvailable marker O---OOSI040TP Ciclev10010926mscaffold_61910513919113780J C_unshiu_00089:mRNA_17.1C_unshiu_00089153791161685Hypothetical proteinAGI-0466.455RP-0428.160
Cp0895 AAvailable marker ----OOTP Ciclev10011406mscaffold_61924170019246874J C_unshiu_00089:mRNA_3.1C_unshiu_00089994514749ATP-dependent RNA helicaseAGI-0467.375
If0205 Bno homozygous cultivar with minor allele ------SI256J C_unshiu_00046:mRNA_66.1C_unshiu_00046551244556744Hypothetical proteinAGI-0486.280KmG-0452.960
Mf0072 AAvailable marker ----OOTP Ciclev10013297mscaffold_61375067113752605J C_unshiu_00155:mRNA_3.1C_unshiu_001551760819347Hypothetical proteinAGI-0491.104KmG-0458.483RP-048.126
Tf0224 OOthers O-----TP Ciclev10011741mscaffold_677853287796808J C_unshiu_00104:mRNA_54.1C_unshiu_00104400959412354Zinc finger CCCH domain-containing protein 32AGI-0499.859
Cp1308 AAvailable marker -O--OOTP Ciclev10011420mscaffold_663294216335005J C_unshiu_00147:mRNA_29.1C_unshiu_00147247701253232Unspecific monooxygenaseAGI-04101.201
Cp0974 ------TP Ciclev10011578mscaffold_680294888035109J C_unshiu_00711:mRNA_6.1C_unshiu_00711128510138133Hypothetical proteinAGI-04107.018
Mf0084 OOthers ------SI383TP Ciclev10012898mscaffold_64038143868J C_unshiu_01371:mRNA_1.1C_unshiu_013711774621242ADP-ribosylation factor A1FAGI-04114.409KmG-0466.806JtR-0411.413
Cp0278 ------TP Ciclev10022561mscaffold_32475079424752907J C_unshiu_00286:mRNA_8.1C_unshiu_002867306881236Hypothetical proteinAGI-04122.142
Tf0010 ------TP Ciclev10021038mscaffold_310542571056078J C_unshiu_00609:mRNA_18.1C_unshiu_006097788379313Putative WRKY transcription factor 41AGI-05
Mf0039 AAvailable marker O---OOSI016,SI147J C_unshiu_00343:mRNA_25.1C_unshiu_00343221381224081PLAC8 family proteinAGI-055.510KmG-05S5.643JtR-0510.014
Tf0342 ------SI151TP Ciclev10019088mscaffold_316494101655963J C_unshiu_00343:mRNA_23.1C_unshiu_00343203038209504DNA repair helicaseAGI-055.510
Gmom03 ------TP Ciclev10019436mscaffold_318646041871328J C_unshiu_01325:mRNA_3.1C_unshiu_01325787614474Bromo-adjacent-like (BAH) domain proteinAGI-057.888
Tf0152 AAvailable marker O---OOTP Ciclev10021000mscaffold_320024272008126J C_unshiu_01105:mRNA_2.1C_unshiu_0110536818106AT-hook motif nuclear localized protein 1AGI-058.506
Cp1598 AAvailable marker ----OOTP Ciclev10021001mscaffold_338023873805494J C_unshiu_00849:mRNA_13.2C_unshiu_00849729357582431 kDa ribonucleoproteinAGI-0512.715
Af1149 ------TP Ciclev10025360mscaffold_71298595412989228J C_unshiu_02261:mRNA_2.1C_unshiu_022611915621966Glycerol kinaseAGI-0521.630
Af1253 ------TP Ciclev10020405mscaffold_332012063204377J C_unshiu_00163:mRNA_29.1C_unshiu_00163211551214568Phosphate/phosphoenolpyruvate translocatorAGI-0524.709
Cp2223 OOthers ------TP Ciclev10022371mscaffold_334833343485637J C_unshiu_00933:mRNA_9.1C_unshiu_009338695889273Protein LATERAL ORGAN BOUNDARIESAGI-0525.049
Bf0174 O-----SI282TP Ciclev10019861mscaffold_335515423555978J C_unshiu_00120:mRNA_17.1C_unshiu_00120130029134158Atp-dependent RNA helicaseAGI-0525.049
Tf0051 ------SI027,SI214TP Ciclev10021952mscaffold_339640363966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0525.590
Vs0016 Bno homozygous cultivar with minor allele ------J C_unshiu_02110:mRNA_3.2C_unshiu_021102766028723MetallothioneinAGI-0525.980KmG-0817.483JtR-08
Tf0294 AAvailable marker O---OOTP Ciclev10021365mscaffold_347947014799518J C_unshiu_00135:mRNA_58.2C_unshiu_00135398519403121Ureidoglycine aminohydrolase isoform 1AGI-0527.135
Cp2229 AAvailable marker ----OOTP Ciclev10022058mscaffold_341174854120274J C_unshiu_00318:mRNA_6.1C_unshiu_003184437647085Nucleoside diphosphate kinaseAGI-0527.135
Af1453 ------TP Ciclev10023068mscaffold_346632114664667J C_unshiu_01589:mRNA_7.1C_unshiu_015892906337936Hypothetical proteinAGI-0527.956
Af1396 ------TP Ciclev10022545mscaffold_349206624923421J C_unshiu_00520:mRNA_16.2C_unshiu_00520166824167867Ribosomal protein L19 family proteinAGI-0528.041
Tf0017 ------SI285TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorAGI-0528.617
Wy0018 AAvailable marker ----OOTP Ciclev10021374mscaffold_353188745321054J C_unshiu_00442:mRNA_14.1C_unshiu_00442123398125451Homeobox-leucine zipper protein HAT3AGI-0529.033KmG-05S20.128JtR-0519.008
Gn0050 ------TP Ciclev10024602mscaffold_353824905385009J C_unshiu_00014:mRNA_87.1C_unshiu_00014637698638678CRT binding factor 3AGI-0529.035KmG-05S21.884JtR-0519.008
Af1679 ------TP Ciclev10021896mscaffold_342601264262819J C_unshiu_00186:mRNA_34.1C_unshiu_00186288266290432Adenylate kinaseAGI-0529.035
Bf0158 -O-O--SI376TP Ciclev10021285mscaffold_352532815254755J C_unshiu_00795:mRNA_3.1C_unshiu_007952253423534Ethylene responsive element binding factor, putativeAGI-0529.035NAT-0521.258RP-0520.825
Bf0165 ------SI280TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1AGI-0529.035NAT-0523.083RP-0519.690
Cp1533 ------TP Ciclev10021868mscaffold_348317514834270J C_unshiu_00768:mRNA_14.1C_unshiu_00768110682113065Lil3 proteinAGI-0529.039
Al0624 ------TP Ciclev10021584mscaffold_34264741342652459J C_unshiu_01228:mRNA_6.1C_unshiu_012284361748513Tetraspanin family proteinAGI-0529.354
Af1452 ------TP Ciclev10018443mscaffold_355184575529974J C_unshiu_00900:mRNA_3.1C_unshiu_009002018630140Pheromone-processing carboxypeptidase kex1AGI-0529.863
Cp0073 O-----TP Ciclev10020501mscaffold_359722885978062J C_unshiu_00997:mRNA_9.1C_unshiu_009976925775059TransaldolaseAGI-0534.924
Cp0076 O-----TP Ciclev10021577mscaffold_363291336332201J C_unshiu_01248:mRNA_3.1C_unshiu_012483903142057ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0535.411
Tf0083 ------SI129TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Bf0024 O-----SI093TP Ciclev10002093mscaffold_53813466238138860J C_unshiu_00319:mRNA_24.1C_unshiu_00319167810171973Probable protein phosphatase 2C 11AGI-0539.006
Gn0056 ------TP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5AGI-0539.424
Cp1556 Bno homozygous cultivar with minor allele ------TP Ciclev10018756mscaffold_32143249421440948J C_unshiu_00175:mRNA_9.1C_unshiu_001759133899600Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplasticAGI-0540.337
Tf0375 ------TP Ciclev10022365mscaffold_31303465413036082J C_unshiu_00020:mRNA_62.1C_unshiu_00020527751528816Homeobox leucine zipper proteinAGI-0540.558
Cp1483 ------TP Ciclev10020574mscaffold_32076297420770394J C_unshiu_00692:mRNA_14.1C_unshiu_00692122321129331Abhydrolase domain-containing protein 11AGI-0541.162
Cp0160 ------TP Ciclev10019883mscaffold_32194055121944032J C_unshiu_00272:mRNA_20.1C_unshiu_00272187755191248EndoglucanaseAGI-0541.267
Tf0153 AAvailable marker O---OOTP Ciclev10022594mscaffold_31695742716959735J C_unshiu_01562:mRNA_2.1C_unshiu_015621205915864Nascent polypeptide-associated complex subunit betaAGI-0541.267
Cp1627 AAvailable marker ----OOTP Ciclev10022024mscaffold_31330939813310636J C_unshiu_00431:mRNA_6.1C_unshiu_004314450745451Chloroplast small heat shock proteinAGI-0541.272
Cp1628 ------TP Ciclev10021963mscaffold_31282291112825620J C_unshiu_02666:mRNA_2.1C_unshiu_026661010412687Rhodanese/cell cycle control phosphatase superfamily proteinAGI-0541.272
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Bf0184 O-----TP Ciclev10021248mscaffold_32489355124898675J C_unshiu_00286:mRNA_27.1C_unshiu_00286216376220366Cysteine protease ATG4BAGI-0541.306
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Vt0011 AAvailable marker ----OOTP Ciclev10021162mscaffold_31298441112986574J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0541.306JtR-0537.780
Ov0420 MDisagree by Marco analysis ------TP Ciclev10019489mscaffold_32484038624845254J C_unshiu_00286:mRNA_25.1C_unshiu_00286176709181573Methylenetetrahydrofolate reductase (NAD(P)H)AGI-0541.306JtR-0541.208
Af1047 ------TP Ciclev10019002mscaffold_31635722716363309J C_unshiu_01252:mRNA_3.1C_unshiu_012526066966705NADH dehydrogenase subunit 11AGI-0541.306
Af1086 ------TP Ciclev10031563mscaffold_41051001810517939J C_unshiu_00028:mRNA_1.2C_unshiu_00028411512036AP-2 complex subunit muAGI-0541.306
Af1087 O-----TP Ciclev10019689mscaffold_32479635124800588J C_unshiu_00286:mRNA_17.1C_unshiu_00286132648135466Glycine hydroxymethyltransferaseAGI-0541.306
Bf0104 O-----J C_unshiu_01101:mRNA_8.1C_unshiu_01101776948095112-oxophytodienoate reductase 2AGI-0541.306NAT-05
Tf0122 ------TP Ciclev10020009mscaffold_32462062324627357J C_unshiu_02869:mRNA_1.1C_unshiu_02869188510204Hypothetical proteinAGI-0541.306
Tf0376 AAvailable marker O---OOSI072TP Ciclev10022680mscaffold_385282928529236J C_unshiu_00154:mRNA_1.1C_unshiu_00154983210761CRT binding factor 3AGI-0541.853
Tf0001.2 AAvailable marker OOO-OOTP Ciclev10020248mscaffold_386475298652282J C_unshiu_00580:mRNA_10.1C_unshiu_005807511881473Transcription factor BIM1AGI-0541.893
Cp0532 ------TP Ciclev10020319mscaffold_33039381130398972J C_unshiu_00501:mRNA_15.1C_unshiu_00501133280137847Solanesyl diphosphate synthaseAGI-0542.168
Tf0011.2 OOthers O-----TP Ciclev10018614mscaffold_31107879811089090J C_unshiu_02207:mRNA_3.1C_unshiu_02207980219021Hypothetical proteinAGI-0542.191
Gn0064 ULess informative for main cultivars O-----SI144,SI380TP Ciclev10019364mscaffold_32935185429354190J C_unshiu_00549:mRNA_6.1C_unshiu_0054939588419219-cis-epoxycarotenoid dioxygenase 1AGI-0542.191RP-0551.531
Cp0540 ------TP Ciclev10020181mscaffold_31042731310435293J C_unshiu_02340:mRNA_1.1C_unshiu_0234020058306DNA repair protein reca, putativeAGI-0542.191
Tf0053 ------SI305TP Ciclev10022321mscaffold_32915342529156189J C_unshiu_01169:mRNA_3.1C_unshiu_011693914141442Peptide methionine sulfoxide reductase B5AGI-0542.265
Bf0233 MDisagree by Marco analysis O-----SI359TP Ciclev10019826mscaffold_365022316504139J C_unshiu_00521:mRNA_1.1C_unshiu_0052124494274Cytochrome P450 76C2AGI-0542.581RP-0527.235
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Lp0102 MDisagree by Marco analysis O-----SI080,SI319,SI360,SI378TP Ciclev10020840mscaffold_33064873230651259J C_unshiu_00759:mRNA_1.1C_unshiu_007599173353Senescence-related gene 1AGI-0542.737KmG-05S41.895JtR-0528.682NAT-0537.917RP-0551.879
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Tf0350 OOthers O-----SI132TP Ciclev10019034mscaffold_389147448921411J C_unshiu_00695:mRNA_7.1C_unshiu_006957148377987Acetyl-coenzyme A synthetaseAGI-0543.295
Gn0027 HDisagree on Clementine haploid genotype ------AGI-0543.412
Lp0235 O-----TP Ciclev10019848mscaffold_394660719468445J C_unshiu_00227:mRNA_19.1C_unshiu_00227186549194369Nepenthesin IIAGI-0543.412RP-0544.731
Tf0268 AAvailable marker O---OOTP Ciclev10021157mscaffold_31014090410142752J C_unshiu_00149:mRNA_29.1C_unshiu_00149326478328059Transcription factor MYB21AGI-0543.800
Bf0402 ------TP Ciclev10020232mscaffold_391372499144663J C_unshiu_00058:mRNA_19.1C_unshiu_00058104866110977TRNA-specific adenosine deaminase-like protein 3AGI-0543.970
Bf0177 ------SI060TP Ciclev10022075mscaffold_381866898189902J C_unshiu_00154:mRNA_43.2C_unshiu_00154341574344576Phosphoserine phosphataseAGI-0544.047
Fb0369 ------TP Ciclev10019885mscaffold_377921887795727J C_unshiu_01545:mRNA_3.1C_unshiu_015453755939424AT-rich interactive domain-containing protein 2AGI-0544.172KmG-05S30.809JtR-0516.246
Mf0017 Bno homozygous cultivar with minor allele ------TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinAGI-0544.674
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Tf0079 MDisagree by Marco analysis O--O--SI270,SI294TP Ciclev10021287mscaffold_370470247049430J C_unshiu_00425:mRNA_7.1C_unshiu_004253560838027Heat stress transcription factor B-4AGI-0545.092
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Lp0143 Bno homozygous cultivar with minor allele ------TP Ciclev10019139mscaffold_360769496080875J C_unshiu_00159:mRNA_40.1C_unshiu_00159339926343475Translation elongation factor GAGI-0545.297JtR-0518.056
Lp0207 O-----TP Ciclev10021695mscaffold_361403326142252J C_unshiu_01103:mRNA_8.1C_unshiu_011036753169104Protein ODORANT1AGI-0545.374RP-0525.010
Tf0012 AAvailable marker ----OOTP Ciclev10018673mscaffold_33760149337607586J C_unshiu_00502:mRNA_21.1C_unshiu_00502155419162660Protein NLP8AGI-0547.173
Af1576 ------TP Ciclev10018636mscaffold_34156633841572373NoAGI-0547.986
Ov0005 AAvailable marker ----OOSI243,SI331TP Ciclev10019557mscaffold_34163661641641083J C_unshiu_02126:mRNA_2.1C_unshiu_021269391133195-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferaseAGI-0547.986
Lp0133 AtAvailable marker O---OOTP Ciclev10021187mscaffold_33965761339660222J C_unshiu_00037:mRNA_84.1C_unshiu_00037603033605555Class I chitinaseAGI-0548.590KmG-05S60.040NAT-0526.483RP-0565.128
Cp0047 HDisagree on Clementine haploid genotype ------TP Ciclev10021599mscaffold_34091814840922656J C_unshiu_00735:mRNA_16.1C_unshiu_00735120088124350Hypothetical proteinAGI-0548.590
Af1109 ------J C_unshiu_00194:mRNA_16.1C_unshiu_001949641598120Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1AGI-0548.590
Tf0081 ------SI038,SI324TP Ciclev10021980mscaffold_33821446838216861J C_unshiu_00575:mRNA_8.1C_unshiu_005754769351431Leucine-rich repeat disease resistance protein-likeAGI-0548.590
Tf0368 AAvailable marker O---OOSI102TP Ciclev10020717mscaffold_34096377440965744J C_unshiu_00735:mRNA_9.1C_unshiu_007357667378652NAC transcription factor 29AGI-0548.590
Tf0411 OOthers O-----TP Ciclev10020263mscaffold_33811119138116265J C_unshiu_00523:mRNA_15.1C_unshiu_00523100297104594Putative transcription factor PosF21AGI-0548.613
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Al0605 OOthers ------TP Ciclev10022151mscaffold_34143406441437122J C_unshiu_00194:mRNA_5.1C_unshiu_001943856941571Eukaryotic translation initiation factor 4EAGI-0548.750KmG-05S65.384
Al0003Al0003.2 ------TP Ciclev10024637mscaffold_34169705241697860J C_unshiu_01778:mRNA_2.1C_unshiu_017782736228139Dehydrin COR15AGI-0549.499
Fb2159 ------SI205,SI300TP Ciclev10021136mscaffold_33960643139608387J C_unshiu_00037:mRNA_76.1C_unshiu_00037551437553057Pirin family proteinAGI-0549.856KmG-05S68.781JtR-0541.770SA-09
Cp0781 AAvailable marker ----OOTP Ciclev10021469mscaffold_34104366341046480J C_unshiu_00305:mRNA_28.1C_unshiu_00305251599254198Thioredoxin-like 7 family proteinAGI-0550.294
Af1096 ------TP Ciclev10020597mscaffold_34206148842063267J C_unshiu_00778:mRNA_10.1C_unshiu_007788974191509Cytochrome P450 82A4AGI-0551.052
If0203 MDisagree by Marco analysis ------TP Ciclev10022993mscaffold_34222922442231230J C_unshiu_00322:mRNA_21.1C_unshiu_00322121122123131Small ubiquitin-related modifierAGI-0551.293KmG-05S67.257JtR-0543.446
Cp1815 OOthers ------TP Ciclev10022373mscaffold_382563988257886J C_unshiu_00154:mRNA_28.1C_unshiu_00154274299275412Wiskott-Aldrich syndrome protein family member 2AGI-0551.501
Tf0256 AtAvailable marker O---OOTP Ciclev10021699mscaffold_34342018743422432J C_unshiu_00411:mRNA_13.1C_unshiu_00411116444118424Myb-related protein Myb4AGI-0552.314
Af1091 O-----TP Ciclev10021043mscaffold_34331604643317909J C_unshiu_00411:mRNA_2.1C_unshiu_004111151013352Arabinose 5-phosphate isomeraseAGI-0552.655
Tf0351 ------SI122TP Ciclev10021622mscaffold_34347209443473220J C_unshiu_00411:mRNA_17.1C_unshiu_00411160316161284Ethylene-responsive transcription factor 1BAGI-0552.655
Tf0036 AAvailable marker O---OOTP Ciclev10022032mscaffold_34385026943852816J C_unshiu_01051:mRNA_11.1C_unshiu_010519436996339Auxin-responsive protein IAA14AGI-0553.260
Cp0030 O-----TP Ciclev10019700mscaffold_34381564743818118J C_unshiu_00869:mRNA_1.1C_unshiu_008691761664Phospholipase A1-Igamma1, chloroplasticAGI-0553.642
Af0015 ------TP Ciclev10019449mscaffold_34402177944027536J C_unshiu_00217:mRNA_10.1C_unshiu_002178639391294Hypothetical proteinAGI-0554.268
Tf0280 ------SI158,SI200TP Ciclev10025566mscaffold_734299643433239J C_unshiu_00301:mRNA_24.3C_unshiu_00301159835163045Floral homeotic protein APETALA 2AGI-0554.268
Tf0068 ------SI106TP Ciclev10020724mscaffold_34414130544144453J C_unshiu_00217:mRNA_25.1C_unshiu_00217201916205032Heat shock transcription factor A7a1AGI-0554.268
Tf0300 AAvailable marker OO--OOTP Ciclev10022370mscaffold_34386244043863744J C_unshiu_01051:mRNA_10.1C_unshiu_010518341784406Auxin-induced protein IAA4AGI-0554.726
Mf0080 MDisagree by Marco analysis ------TP Ciclev10021936mscaffold_34420296844205663J C_unshiu_00217:mRNA_35.1C_unshiu_00217286418288656Transmembrane BAX inhibitor motif-containing protein 4AGI-0555.049KmG-05S64.740JtR-0538.503RP-0437.046
Ov0423 T3 or more alleleic model O-----TP Ciclev10023016mscaffold_34295436242955051J C_unshiu_00152:mRNA_28.1C_unshiu_00152189707190632Hypothetical proteinAGI-0555.522
Af1685 ------TP Ciclev10023782mscaffold_34008698540089114J C_unshiu_00335:mRNA_9.1C_unshiu_003357616477436Hypothetical proteinAGI-0556.481
Mf0041 AAvailable marker ----OOTP Ciclev10022012mscaffold_34507682145080633J C_unshiu_00069:mRNA_16.1C_unshiu_00069123654127483Histidine-containing phosphotransfer protein 1AGI-0556.534KmG-05S73.977JtR-0538.393
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Al0614 ------TP Ciclev10022348mscaffold_34498771944991534J C_unshiu_00069:mRNA_32.1C_unshiu_00069220620224375Methyl-CpG-binding domain 4AGI-0556.788KmG-0635.565
Tf0184 AAvailable marker O---OOTP Ciclev10019968mscaffold_34539385745398298J C_unshiu_00546:mRNA_8.1C_unshiu_005467502378260Zinc finger CCCH domain-containing protein 3AGI-0557.948
Tf0309 ------SI190TP Ciclev10020466mscaffold_34531401645316651J C_unshiu_00546:mRNA_23.1C_unshiu_00546158416160829TLP domain class transcription factorAGI-0557.948
Mf0055 DDominant marker ----OOTP Ciclev10022212mscaffold_34555134545552620J C_unshiu_01674:mRNA_4.1C_unshiu_016741777728549Hypothetical proteinAGI-0557.948KmG-05S75.866JtR-0538.749NAT-0539.573
Cp1427 AAvailable marker ----OOTP Ciclev10021746mscaffold_34557686345579197J C_unshiu_00326:mRNA_5.1C_unshiu_003262307325265Bifunctional protein FolDAGI-0558.917
Af1470 ------TP Ciclev10023233mscaffold_34638026446381057NoAGI-0562.767
Ov0127Ov0126.2 ------SI124,SI284TP Ciclev10022482mscaffold_34681490946817474J C_unshiu_00053:mRNA_57.3C_unshiu_00053477728479995ADP-ribosylation factor A1FAGI-0565.510KmG-05S81.631JtR-0545.715RP-0564.195
Tf0370 ------TP Ciclev10019820mscaffold_34712109347124518J C_unshiu_00023:mRNA_20.1C_unshiu_00023123134131389Hypothetical proteinAGI-0569.117
Gmom16 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.007
Gmom04 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.504
Bf0146 O-----TP Ciclev10022345mscaffold_34852882048531316J C_unshiu_00026:mRNA_37.1C_unshiu_00026280361282836RRNA-processing protein FCF1AGI-0578.274
Tf0279 ------SI073TP Ciclev10019219mscaffold_34903144149035202J C_unshiu_00018:mRNA_78.1C_unshiu_00018562898566588Putative anthocyanin regulatorAGI-0580.539
Wy0005 DDominant marker O-----TP Ciclev10019927mscaffold_34833710548339028NoAGI-0583.570KmG-05S122.932
Al0039 ------J C_unshiu_00018:mRNA_107.1C_unshiu_00018723553725648Bifunctional protein FolDAGI-0595.305
Fb1567 ------TP Ciclev10022690mscaffold_35063767350640392NoAGI-05103.212
Fb0144 AAvailable marker ----OOSI191TP Ciclev10019665mscaffold_35086181350866146J C_unshiu_00206:mRNA_42.1C_unshiu_00206283219294491Hypothetical proteinAGI-05107.806
Al0647 MDisagree by Marco analysis O-----TP Ciclev10016069mscaffold_23264074332643349J C_unshiu_00070:mRNA_53.1C_unshiu_00070403765406305Nitric oxide synthase-interacting protein homologAGI-06KmG-0646.877
Tf0402 ------TP Ciclev10015893mscaffold_23621196136216858J C_unshiu_00077:mRNA_57.1C_unshiu_00077335424340163MYB-CC type transfactorAGI-069.560
Gn0073 AAvailable marker OO--OOTP Ciclev10014770mscaffold_23589566235898841J C_unshiu_00077:mRNA_4.1C_unshiu_000773041032987Tonoplast dicarboxylate transporterAGI-0612.402
Tf0330 ------SI064,SI139TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1AGI-0613.470
Vt0001 AAvailable marker ----OOTP Ciclev10014290mscaffold_23562493535628855J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0616.327KmG-0668.041
Gn0005 MDisagree by Marco analysis ------TP Ciclev10015934mscaffold_23569324935696515J C_unshiu_00337:mRNA_13.1C_unshiu_003376888371725FibrillinAGI-0616.857KmG-0663.840NAT-06S59.976
Fb0104 OOthers O-----TP Ciclev10016358mscaffold_23575854635760859J C_unshiu_00337:mRNA_24.1C_unshiu_00337135198136991Tropinone reductase likeAGI-0616.857RP-06.216.271
Cp0635 AAvailable marker O-O-OOJ C_unshiu_00337:mRNA_4.1C_unshiu_00337115961530750S ribosomal protein L4AGI-0617.029
Bf0028 DDominant marker O--O--SI001TP Ciclev10014319mscaffold_23535477635363026J C_unshiu_00048:mRNA_32.1C_unshiu_00048179733188796Soluble starch synthase III-1AGI-0617.966
If0003 Bno homozygous cultivar with minor allele ------SI130TP Ciclev10015433mscaffold_23547007835472862J C_unshiu_00048:mRNA_13.1C_unshiu_000486465267377AminomethyltransferaseAGI-0618.136JtR-06S67.371
If0002 MDisagree by Marco analysis ------TP Ciclev10016861mscaffold_23554669235549207J C_unshiu_01497:mRNA_3.1C_unshiu_014971021514601YggS family pyridoxal phosphate enzymeAGI-0619.002KmG-0662.901
Cp0384 AAvailable marker O---OOTP Ciclev10015162mscaffold_23542259835425980J C_unshiu_00048:mRNA_23.2C_unshiu_00048111764114820APS reductaseAGI-0619.002
Tf0119 AAvailable marker ----OOTP Ciclev10014416mscaffold_23556423835570619J C_unshiu_01497:mRNA_5.1C_unshiu_014972029733375Hypothetical proteinAGI-0619.002
Gn0061.2 MDisagree by Marco analysis O-----TP Ciclev10031014mscaffold_42550060125505812J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0620.248
Al0417 MDisagree by Marco analysis O-----SI244,SI255TP Ciclev10015483mscaffold_23521269135214865J C_unshiu_00048:mRNA_50.1C_unshiu_00048328418330513Kelch repeat-containing F-box family proteinAGI-0620.297KmG-0662.256NAT-06S56.647
Af1580 ------TP Ciclev10016368mscaffold_23501384835015439J C_unshiu_00048:mRNA_76.1C_unshiu_00048512885514767NAD(P)-binding Rossmann-fold superfamily protein isoform 2AGI-0620.932
Tf0344 AAvailable marker O---OOTP Ciclev10016433mscaffold_23462423634631123J C_unshiu_00002:mRNA_17.1C_unshiu_00002124392131264Floral homeotic protein AGAMOUSAGI-0624.216
Cp0537 AAvailable marker O---OOTP Ciclev10016779mscaffold_23418921634193815J C_unshiu_00002:mRNA_71.2C_unshiu_00002543564547918Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10AGI-0625.930
Cp0190 OOthers ------TP Ciclev10023646mscaffold_31864842618650443J C_unshiu_00618:mRNA_5.1C_unshiu_006182027322297UPF0426 protein, chloroplasticAGI-0627.617
Vs0005 OOthers O-----SI022,SI075TP Ciclev10016009mscaffold_23321683933219042J C_unshiu_00002:mRNA_211.1C_unshiu_0000215118091513915Epoxide hydrolase 2AGI-0631.521KmG-0259.329JtR-06S50.000NAT-06S50.000
Tf0004 ------SI219,SI330TP Ciclev10014045mscaffold_23307482133084014J C_unshiu_00153:mRNA_7.1C_unshiu_001536640675053Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2AGI-0632.312
Af1321 ------TP Ciclev10009751mscaffold_11637116816375666J C_unshiu_00108:mRNA_25.1C_unshiu_00108320409344557Hypothetical proteinAGI-0634.500
Em0001 ------TP Ciclev10016968mscaffold_23192734231929229J C_unshiu_00027:mRNA_54.1C_unshiu_0002734506734672750S ribosomal protein L14, chloroplasticAGI-0635.643
Af1693 ------TP Ciclev10016657mscaffold_23206914932072079J C_unshiu_00027:mRNA_31.2C_unshiu_00027205885208484DERLIN-2.2 isoform 1AGI-0635.794
Wy0056Wy0056.em AAvailable marker ----OOTP Ciclev10014198mscaffold_23174043131747095J C_unshiu_00027:mRNA_81.1C_unshiu_00027521555527308Auxin response factorAGI-0636.788
Wy0035 ULess informative for main cultivars O-----TP Ciclev10014857mscaffold_23114884931150616J C_unshiu_00292:mRNA_13.1C_unshiu_00292110620112650FAD-binding Berberine family proteinAGI-0636.863
Af1312 ------TP Ciclev10014367mscaffold_22902243329030537J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1AGI-0637.883
Tf0432 AAvailable marker O---OOTP Ciclev10016685mscaffold_23142045731425299J C_unshiu_00091:mRNA_39.1C_unshiu_00091370141375026Nuclear transcription factor Y subunit A-7AGI-0638.958
Mf0083 Bno homozygous cultivar with minor allele ------TP Ciclev10015092mscaffold_23383740333842156NoAGI-0639.963
Ov0412 OOthers ----OOSI050,SI222TP Ciclev10015053mscaffold_23103608831038222J C_unshiu_00143:mRNA_11.1C_unshiu_001436747569537SEC14 cytosolic factor family proteinAGI-0642.110KmG-0639.373JtR-06S15.372
Tf0343 AtAvailable marker O---OOTP Ciclev10016587mscaffold_22920468029206501J C_unshiu_00022:mRNA_67.1C_unshiu_00022489282490950High mobility group B protein 7AGI-0644.393
Cp0214 OOthers ------TP Ciclev10016075mscaffold_22973224929735969J C_unshiu_00073:mRNA_25.1C_unshiu_00073178507182191MOSC domain-containing protein 2, mitochondrialAGI-0646.660
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Mf0096 OOthers ------SI249,SI333TP Ciclev10018252mscaffold_22777486327778271J C_unshiu_00745:mRNA_6.1C_unshiu_007454815062370Hypothetical proteinAGI-0660.007KmG-0622.141JtR-06S5.708NAT-06S10.082
Cp0431 AAvailable marker O---OOTP Ciclev10015731mscaffold_22708417727089027J C_unshiu_00017:mRNA_35.1C_unshiu_00017248152252850E3 ubiquitin protein ligase RIE1AGI-0660.660
Af1593 ------TP Ciclev10015971mscaffold_22773839727741912J C_unshiu_00745:mRNA_8.1C_unshiu_007458226585742Prolactin regulatory element-binding protein, putativeAGI-0661.501
Ov0403 AAvailable marker O---OOSI136,SI298,SI325TP Ciclev10016280mscaffold_22389181423893095J C_unshiu_00081:mRNA_50.1C_unshiu_00081296655297936Chlorophyll a/b binding proteinAGI-0661.779KmG-0612.610JtR-06S
Af1056 ------TP Ciclev10015905mscaffold_22659597226598955J C_unshiu_00262:mRNA_14.1C_unshiu_002628457387520Purple acid phosphatase 3AGI-0666.320
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Al0635 AAvailable marker ----OOTP Ciclev10015354mscaffold_22643554026438838J C_unshiu_00197:mRNA_27.1C_unshiu_00197251131253300GAGA-binding transcriptional activatorAGI-0669.195KmG-0615.268JtR-06S1.903NAT-06S7.869
Cp0026 ------TP Ciclev10014741mscaffold_22493868624943643J C_unshiu_00472:mRNA_8.1C_unshiu_004728527889618Putative ADP-glucose pyrophosphorylase small subunitAGI-0672.449
Cp0459 ------TP Ciclev10016822mscaffold_22754966027551146J C_unshiu_00017:mRNA_86.1C_unshiu_00017707192708314NADH dehydrogenase-like complex LAGI-0674.140
Cp1216 AAvailable marker ----OOTP Ciclev10017113mscaffold_21211279012113903J C_unshiu_00026:mRNA_6.1C_unshiu_000264665847677CCR proteinAGI-0676.905
Af1111 ------TP Ciclev10015086mscaffold_22302119323023457J C_unshiu_00172:mRNA_31.1C_unshiu_00172270783273047Glucan endo-1,3-beta-glucosidase 13AGI-0683.445
Ov0525 ULess informative for main cultivars O-----TP Ciclev10015260mscaffold_21583314215836770J C_unshiu_01875:mRNA_4.1C_unshiu_018753598339196ADP/ATP translocase 1AGI-0691.522SA-0627.092
Fb0301 AAvailable marker ----OOSI053TP Ciclev10014804mscaffold_21414353714146003J C_unshiu_00466:mRNA_1.1C_unshiu_0046613811161784-coumarate:coenzyme A ligase 4AGI-0692.727KmG-06RP-06.116.627
Tf0264 AAvailable marker O---OOTP Ciclev10015873mscaffold_2248256250675J C_unshiu_00109:mRNA_29.1C_unshiu_00109175776179005GANAGI-06103.728
Tf0455 OOthers O-----TP Ciclev10017004mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical proteinAGI-06114.172
Bf0212 ------SI332TP Ciclev10016442mscaffold_292066869211152J C_unshiu_00004:mRNA_52.2C_unshiu_00004401860406444Carbonate dehydrataseAGI-06117.593
Bf0116 ------SI260TP Ciclev10015490mscaffold_276627537667440J C_unshiu_00729:mRNA_11.1C_unshiu_007298141586474Aminotransferase 2AGI-06133.800RP-06.128.601
Bf0161 ------SI089,SI348TP Ciclev10015189mscaffold_266580036660691J C_unshiu_00072:mRNA_47.1C_unshiu_00072364436365812Sequence-specific DNA binding transcription factorsAGI-06144.849
Af1636 ------TP Ciclev10016216mscaffold_266118136619116J C_unshiu_00072:mRNA_53.1C_unshiu_00072416072423443Zinc transporter ZTP29AGI-06150.228
Em0005Fb1892.em ------J C_unshiu_00168:mRNA_8.1C_unshiu_001687638680254BEL1-like homeodomain protein 9AGI-07
Cp0870 Bno homozygous cultivar with minor allele ------SI338TP Ciclev10031974mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-075.180
Al0524 AAvailable marker OO--OOSI043,SI341TP Ciclev10031723mscaffold_4115362118025J C_unshiu_02038:mRNA_4.1C_unshiu_020383425638775Hypothetical proteinAGI-075.972JtR-0776.060RP-0774.381
Tf0410 AAvailable marker O---OOTP Ciclev10032838mscaffold_4213798215848J C_unshiu_00168:mRNA_34.1C_unshiu_00168273522275858Pollen-specific protein SF3AGI-076.146
Af1623 ------TP Ciclev10032683mscaffold_4612480615318J C_unshiu_01079:mRNA_2.2C_unshiu_0107931365814Thylakoid lumenal 15 kDa protein 1, chloroplasticAGI-077.907
Ov0508Ov0507.2 ------SI322TP Ciclev10031860mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-078.291JtR-0776.060
Al0617 AAvailable marker O---OOTP Ciclev10033546mscaffold_410211791023023J C_unshiu_00012:mRNA_24.1C_unshiu_00012188654191971Ubiquitin-binding WIYLD domain proteinAGI-078.553JtR-0774.121
Cp0039 O-----TP Ciclev10032929mscaffold_415496791551396J C_unshiu_00012:mRNA_98.1C_unshiu_00012722822724539LOB domain-containing protein 12AGI-0711.882
Af1505 ------TP Ciclev10031326mscaffold_415312621535758J C_unshiu_00012:mRNA_96.1C_unshiu_00012704342708725Multiple inositol polyphosphate phosphatase 1AGI-0712.283
Vt0029 ------TP Ciclev10031975mscaffold_424513452454325J C_unshiu_00979:mRNA_17.1C_unshiu_009797901681937GroES-like zinc-binding alcohol dehydrogenase family proteinAGI-0713.238
Ov0002 AAvailable marker O---OOSI110,SI179TP Ciclev10032770mscaffold_424228612424838J C_unshiu_00979:mRNA_13.2C_unshiu_00979505085247860S ribosomal protein L10AGI-0713.657JtR-0768.221RP-0782.035
Tf0335 ------SI014,SI168TP Ciclev10033529mscaffold_424577982458868J C_unshiu_00979:mRNA_19.1C_unshiu_009798539086600C2 domain proteinAGI-0713.855
Fb0322 O-----TP Ciclev10030532mscaffold_432497103254808J C_unshiu_00342:mRNA_35.1C_unshiu_00342217525222590Splicing factor 3B subunit 3AGI-0714.580JtR-0764.384RP-0747.636
Lp0220 O-----TP Ciclev10000749mscaffold_53922121039227401J C_unshiu_00495:mRNA_21.1C_unshiu_00495125230136174Hypothetical proteinAGI-0714.968
Lp0112 AAvailable marker O-----TP Ciclev10032923mscaffold_437498093751724J C_unshiu_00236:mRNA_28.1C_unshiu_00236161422163318ATP synthase subunit d, mitochondrialAGI-0719.603RP-0750.962
Cp0975 MDisagree by Marco analysis ------TP Ciclev10012312mscaffold_679241897928192J C_unshiu_00631:mRNA_15.1C_unshiu_00631149702153660Isopentenyl pyrophosphate isomeraseAGI-0729.152
Cp0634 ------TP Ciclev10031740mscaffold_41566046315665838J C_unshiu_00824:mRNA_8.1C_unshiu_0082496745119992Hypothetical proteinAGI-0732.589
Bf0031 O-----TP Ciclev10031547mscaffold_440775574083819J C_unshiu_00306:mRNA_12.1C_unshiu_003065170757589Chorismate synthaseAGI-0732.590RP-0719.092
Cp0237 ------TP Ciclev10033007mscaffold_41065238110655082J C_unshiu_00483:mRNA_11.1C_unshiu_00483100177109515Protein LSD1AGI-0735.506
Tf0087 ------SI166,SI271,SI287TP Ciclev10031120mscaffold_41141233111417624J C_unshiu_00019:mRNA_18.1C_unshiu_00019190344195992Two-component response regulator-like APRR2AGI-0735.897
Mf0070 MDisagree by Marco analysis O-----SI017TP Ciclev10017346mscaffold_230673373069249J C_unshiu_00246:mRNA_8.1C_unshiu_002466825169988Hypothetical proteinAGI-0736.616JtR-0752.611RP-0719.079
Cp2118 ------TP Ciclev10032406mscaffold_41456545614568265J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0737.152
Tf0318 AAvailable marker OOO-OOTP Ciclev10031873mscaffold_41375143313754767J C_unshiu_00240:mRNA_28.2C_unshiu_00240282002285335Transcription factor bHLH137AGI-0737.467
Tf0267 AAvailable marker O---OOTP Ciclev10031834mscaffold_41257152612575185J C_unshiu_00847:mRNA_8.1C_unshiu_008474865152296Squamosa promoter-binding-like protein 13AGI-0737.800
Cp0233 ------TP Ciclev10031694mscaffold_41121087911216325J C_unshiu_00061:mRNA_64.1C_unshiu_00061550725556167Ribose-phosphate pyrophosphokinase 4AGI-0737.826
Fb1134.2 ------TP Ciclev10030474mscaffold_495477079559498J C_unshiu_00140:mRNA_14.1C_unshiu_00140164689176715DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5AGI-0738.546
Tf0076 ------SI266TP Ciclev10031150mscaffold_472001357204232J C_unshiu_00013:mRNA_63.3C_unshiu_00013459064463137NAC domain-containing protein 78AGI-0738.565
Al0206 AAvailable marker ----OOTP Ciclev10032727mscaffold_41230948012311438J C_unshiu_00365:mRNA_26.1C_unshiu_00365192643194502NADPH-dependent codeinone reductase-like proteinAGI-0738.565JtR-0752.611RP-0729.935
Tf0027 ------SI046TP Ciclev10026602mscaffold_71391168413912447J C_unshiu_00792:mRNA_11.1C_unshiu_007929233193069Ethylene-responsive transcription factor ERF003AGI-0738.916
Af1629 ------TP Ciclev10012332mscaffold_629695272973147J C_unshiu_00060:mRNA_62.1C_unshiu_00060539807543307Mitochondrial carnitine/acylcarnitine carrier protein CACLAGI-0739.420
Cp1044 Bno homozygous cultivar with minor allele ------TP Ciclev10015927mscaffold_243542784358516J C_unshiu_00062:mRNA_38.1C_unshiu_00062326045332995Iron-sulfur cluster formation ABC transporter ATP-binding subunitAGI-0739.420
Cp1279 AAvailable marker ----OOTP Ciclev10031414mscaffold_41290077712903692J C_unshiu_00461:mRNA_17.1C_unshiu_00461144878147555Ornithine aminotransferaseAGI-0740.184
Bf0027 ------SI372TP Ciclev10032632mscaffold_41456545614567860J C_unshiu_00113:mRNA_23.1C_unshiu_00113169695172465Superoxide dismutaseAGI-0740.515
Ov0425 Bno homozygous cultivar with minor allele ------SI051,SI291,SI351,SI371TP Ciclev10015385mscaffold_240211674024377J C_unshiu_00992:mRNA_13.1C_unshiu_009927900882132DnaJAGI-0741.317RP-0725.534
Edb003 OOthers ------TP Ciclev10032012mscaffold_41604632216048971J C_unshiu_01260:mRNA_4.1C_unshiu_012603013632342Putative WRKY transcription factor 28AGI-0741.830
Tf0065 ------SI142TP Ciclev10030696mscaffold_41394579513951313J C_unshiu_00357:mRNA_3.1C_unshiu_003573518939739Auxin response factorAGI-0741.876
Tf0112 O-----TP Ciclev10031118mscaffold_41701458217026325J C_unshiu_00225:mRNA_9.1C_unshiu_002253709044898Regulation of nuclear pre-mRNA domain-containing protein 1BAGI-0743.014
Gn0040 AAvailable marker ----OOSI015,SI337TP Ciclev10033176mscaffold_41623275616233365J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0743.542KmG-0756.094JtR-0748.672
Tf0235 MDisagree by Marco analysis O--O--TP Ciclev10030472mscaffold_41705765817074755J C_unshiu_00225:mRNA_13.1C_unshiu_002257570696678TATA-binding protein-associated factor 172AGI-0743.879
Mf0097 AAvailable marker OO-OOOSI235,SI365NoAGI-0744.663KmG-0750.959JtR-0744.863NAT-073.290RP-0746.168
Fb0234 ------SI250,SI265TP Ciclev10032271mscaffold_41617683616178421J C_unshiu_00086:mRNA_8.1C_unshiu_000865276454349Protodermal factor 1.3, putativeAGI-0745.424RP-0730.993
Cp0062 O-----TP Ciclev10032378mscaffold_41610719916109587J C_unshiu_01642:mRNA_2.1C_unshiu_016421631620085Ribose-phosphate diphosphokinaseAGI-0745.716
Tf0320 ------SI203TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.2C_unshiu_0008699963109609AG MADS-box proteinAGI-0745.716
If0207 HDisagree on Clementine haploid genotype ------J C_unshiu_01172:mRNA_2.1C_unshiu_011722841328712Hypothetical proteinAGI-0745.716
Tf0167 ------SI230,SI241,SI247TP Ciclev10030998mscaffold_41714335017147918J C_unshiu_00478:mRNA_2.1C_unshiu_004781923227824Sigma factorAGI-0746.244
Tf0213 OOthers O-----TP Ciclev10030571mscaffold_41883954618848948J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putativeAGI-0748.581
Vt0028 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinAGI-0751.998KmG-0744.183JtR-0739.088
Tf0310 ------TP Ciclev10031598mscaffold_41968188419685929J C_unshiu_00099:mRNA_27.1C_unshiu_00099233334237357NAC domain-containing protein 8AGI-0754.869
Tf0337 AAvailable marker O---OOTP Ciclev10031846mscaffold_41963541519637061J C_unshiu_00099:mRNA_23.1C_unshiu_00099186480188051Ap2 erf and b3 domain-containing transcription factor rav2AGI-0754.869
Mf0010 Bno homozygous cultivar with minor allele ------SI048,SI149TP Ciclev10032902mscaffold_41946766919468803J C_unshiu_00099:mRNA_4.1C_unshiu_00099124461335730S ribosomal protein 3, chloroplasticAGI-0755.503KmG-0742.271JtR-0735.215NAT-07
Tf0165 AAvailable marker O---OOTP Ciclev10031793mscaffold_41960547319608059J C_unshiu_00099:mRNA_19.1C_unshiu_00099154500156794Two-component response regulator ARR18AGI-0755.503
Tf0212 ------SI196TP Ciclev10030538mscaffold_41981680019825304J C_unshiu_00535:mRNA_20.1C_unshiu_00535166525174142Putative nuclear matrix constituent protein 1-like proteinAGI-0756.586
Cp0675 AAvailable marker O---OOTP Ciclev10030633mscaffold_42029424020301426J C_unshiu_00015:mRNA_33.1C_unshiu_00015302440309360DNA-directed RNA polymeraseAGI-0759.793
Gn0046 ------TP Ciclev10001212mscaffold_52152243321525218J C_unshiu_00201:mRNA_11.2C_unshiu_00201136005138785Aspartic proteinase nepenthesin-1AGI-0764.812JtR-0823.181
Tf0148 AAvailable marker O---OOSI119TP Ciclev10032816mscaffold_42099870821001535J C_unshiu_00010:mRNA_116.1C_unshiu_00010869802872410Putative WRKY transcription factor 75AGI-0764.812
Af1633 ------TP Ciclev10020304mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43AGI-0767.201
Bf0232 ------TP Ciclev10031191mscaffold_42186177421865635J C_unshiu_01346:mRNA_3.1C_unshiu_013461820622054T-complex protein 1 subunit deltaAGI-0767.250RP-076.705
Lp0212 O-----TP Ciclev10030930mscaffold_42269705622699336J C_unshiu_00004:mRNA_48.1C_unshiu_00004381547383756Polygalacturonase 1 beta-like protein 3AGI-0769.544
Af1495 ------TP Ciclev10032113mscaffold_42252309222528307J C_unshiu_00004:mRNA_77.1C_unshiu_00004548746553542UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3AGI-0769.544
Af1447 ------TP Ciclev10031155mscaffold_42280299522807340J C_unshiu_00004:mRNA_35.1C_unshiu_00004275820279748Aldehyde dehydrogenaseAGI-0770.744
Af1432 ------TP Ciclev10032069mscaffold_42366678423669594J C_unshiu_00001:mRNA_103.1C_unshiu_00001659252662036UDP-galactose/UDP-glucose transporter 5BAGI-0772.828
Cp0454 ------TP Ciclev10030551mscaffold_42320093623206254J C_unshiu_00001:mRNA_32.1C_unshiu_00001214996218740DEAD-box ATP-dependent RNA helicase ISE2, chloroplasticAGI-0773.034
Af1509 ------TP Ciclev10032314mscaffold_42356425123568956J C_unshiu_00001:mRNA_83.3C_unshiu_00001555659560336Hypersensitive-induced response protein 1AGI-0773.796
Ov0105.2Ov0106.2 ------TP Ciclev10031362mscaffold_42355285623556415J C_unshiu_00001:mRNA_81.1C_unshiu_00001545345548897Receptor-like kinase plantAGI-0774.064KmG-0715.390JtR-075.947
Gn0048 AAvailable marker -O--OOSI289TP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7AGI-0774.225KmG-077.964JtR-074.200
Cp0093 Bno homozygous cultivar with minor allele O-----TP Ciclev10032427mscaffold_42359643423599906J C_unshiu_00001:mRNA_89.1C_unshiu_00001587949598235Putative WRKY transcription factor 72AGI-0774.537
Tf0045 ------SI303,SI321TP Ciclev10032837mscaffold_42349602023497466J C_unshiu_00001:mRNA_74.1C_unshiu_00001490607491890Homeobox transcription factorAGI-0774.573
Cp0452 AAvailable marker ----OOTP Ciclev10030661mscaffold_42357539923582495J C_unshiu_00001:mRNA_85.1C_unshiu_00001566935573821Alpha-amylase-like 3 isoform 1AGI-0775.350
Al0408 O-----TP Ciclev10031487mscaffold_42373775723740513J C_unshiu_00001:mRNA_109.1C_unshiu_00001727392729266F-box/kelch-repeat protein SKIP11AGI-0775.917KmG-0713.235JtR-071.788
Tf0424 ------TP Ciclev10031190mscaffold_42390818923912723J C_unshiu_00001:mRNA_134.1C_unshiu_00001904872908655ApyraseAGI-0777.041
Tf0094 ------SI006TP Ciclev10031937mscaffold_42395703823959134J C_unshiu_00001:mRNA_145.1C_unshiu_00001950657954895Myb family transcription factor APLAGI-0777.141
Cp0089 Bno homozygous cultivar with minor allele O-O---TP Ciclev10032543mscaffold_42385883023861090J C_unshiu_00001:mRNA_128.1C_unshiu_00001852968856494CAAX amino terminal protease family proteinAGI-0777.194
Af1690 ------TP Ciclev10032651mscaffold_42392375723925178J C_unshiu_00001:mRNA_137.1C_unshiu_00001920379924128Hypothetical proteinAGI-0777.752
Gmom22 ------TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1AGI-0778.469KmG-072.659
Cp0057 ------TP Ciclev10031335mscaffold_42422770324230754J C_unshiu_00001:mRNA_187.1C_unshiu_0000112443531247404DUF1336 family proteinAGI-0779.269
Af1405 ------TP Ciclev10032481mscaffold_42450383824505365J C_unshiu_00001:mRNA_238.1C_unshiu_0000115138111515209FH interacting protein 1AGI-0783.026
Af3017 ------TP Ciclev10031492mscaffold_42440184124406470J C_unshiu_00001:mRNA_224.1C_unshiu_0000114157781420221Serine/threonine-protein kinase PBS1AGI-0783.217
Bf1243 ------TP Ciclev10032276mscaffold_42465701524660141J C_unshiu_00001:mRNA_262.1C_unshiu_0000116636301666687U3 small nucleolar ribonucleoprotein IMP4AGI-0784.114
Tf0043 ------TP Ciclev10032519mscaffold_42482026924824732J C_unshiu_00001:mRNA_295.1C_unshiu_0000118713011874281Agamous-like MADS-box protein AGL15AGI-0784.593
Af1187 ------TP Ciclev10031748mscaffold_42499601725000652J C_unshiu_00001:mRNA_314.1C_unshiu_0000119916931996431Tocopherol O-methyltransferaseAGI-0785.027
Gn0071 Bno homozygous cultivar with minor allele O-----SI363TP Ciclev10031039mscaffold_42550644625511133J C_unshiu_00001:mRNA_343.1C_unshiu_00001219101721998249-cis-epoxycarotenoid dioxygenase 4AGI-0786.113
Wy0011 OOthers O-----SI091TP Ciclev10032364mscaffold_42441760224419019J C_unshiu_00001:mRNA_226.1C_unshiu_0000114299431431279Enoyl CoA hydratase/isomeraseAGI-0786.288
Gn0002 ------TP Ciclev10032697mscaffold_433359453338632J C_unshiu_00465:mRNA_12.1C_unshiu_00465149021153095Hypothetical proteinAGI-0790.233JtR-0764.361
Tf0014.2 ------TP Ciclev10030185mscaffold_82497631524979483J C_unshiu_00271:mRNA_9.1C_unshiu_002715632561820Transcription factorAGI-08
Cp2188 AAvailable marker ----OOTP Ciclev10028997mscaffold_82466672924669708J C_unshiu_00021:mRNA_116.1C_unshiu_00021778469782836Phytol kinaseAGI-082.186
Mf0079 AAvailable marker O---OOSI067TP Ciclev10028839mscaffold_82472193724724569J C_unshiu_00984:mRNA_8.1C_unshiu_009845567658212Cinnamoyl CoA reductaseAGI-083.409KmG-08NAT-082
Lp0119 AAvailable marker ----OOSI276TP Ciclev10028631mscaffold_82431572024317671J C_unshiu_00021:mRNA_65.1C_unshiu_00021426040431920Hypothetical proteinAGI-088.544
Lp0031 ------TP Ciclev10027944mscaffold_82226140822266208J C_unshiu_00639:mRNA_5.1C_unshiu_006394532149901N-terminal isoform 1AGI-089.183
Fb2130 ------SI069,SI117TP Ciclev10030030mscaffold_82434112924344795J C_unshiu_00021:mRNA_68.1C_unshiu_00021452003461315Hypothetical proteinAGI-0811.809KmG-0811.813
Cp0719 ------TP Ciclev10028417mscaffold_82325704323262019J C_unshiu_02393:mRNA_2.1C_unshiu_023931863723537Inner membrane protein ALBINO3AGI-0812.793
Fb0159 AAvailable marker O---OOSI227TP Ciclev10028241mscaffold_82345663023459052J C_unshiu_00375:mRNA_4.1C_unshiu_003752795230443O-Glycosyl hydrolases family 17 proteinAGI-0813.499KmG-089.978RP-082.327
Cp2190 Bno homozygous cultivar with minor allele ------TP Ciclev10028681mscaffold_82441658224418982J C_unshiu_00021:mRNA_82.1C_unshiu_00021526890529253Kinase PfkBAGI-0813.780
Af1208 ------TP Ciclev10029134mscaffold_82303629123037524J C_unshiu_02220:mRNA_1.1C_unshiu_022201198213216Tonoplast intrinsic proteinAGI-0817.057
Bf0145 O--O--SI272,SI327,SI368TP Ciclev10027909mscaffold_82273083922737522J C_unshiu_00158:mRNA_13.1C_unshiu_00158102548109253Pseudo-response regulator 37AGI-0820.703RP-085.775
Al0416 OOthers ------TP Ciclev10028443mscaffold_82231699922319482J C_unshiu_00639:mRNA_12.1C_unshiu_006399069899467Elongation factor 1-alphaAGI-0823.023JtR-0760.405NAT-08221.126
Tf0412 ------TP Ciclev10028306mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Tf0150 AAvailable marker OO-OOOSI262TP Ciclev10028292mscaffold_82219105622193554J C_unshiu_01354:mRNA_7.2C_unshiu_013545134853833Zinc finger protein JACKDAWAGI-0825.220
Tf0029 ------TP Ciclev10027901mscaffold_82188737221893128J C_unshiu_00500:mRNA_16.1C_unshiu_00500147319151840Auxin response factorAGI-0827.318
Tf0241 Bno homozygous cultivar with minor allele O-----TP Ciclev10027798mscaffold_82210687222114471J C_unshiu_00481:mRNA_18.1C_unshiu_00481121975128680Zinc finger CCCH domain-containing protein 24AGI-0827.618
Bf0412 ------NoAGI-0829.534
Gn0043 MDisagree by Marco analysis ---O--SI323TP Ciclev10027790mscaffold_82195312921960709J C_unshiu_02574:mRNA_1.1C_unshiu_025742470Class III homeodomain leucine zipper proteinAGI-0830.721KmG-0827.458
Ov0520 OOthers O-----TP Ciclev10029053mscaffold_847123934713689J C_unshiu_00438:mRNA_3.1C_unshiu_004383434335619BURP domain-containing proteinAGI-0833.144JtR-0826.748
Tf0096 O-----TP Ciclev10028804mscaffold_82136937321370728J C_unshiu_00784:mRNA_1.1C_unshiu_007842971652Transcription factor RAX3AGI-0834.042
Tf0227 AAvailable marker O---OOTP Ciclev10031750mscaffold_42166606121671693J C_unshiu_00010:mRNA_30.1C_unshiu_00010183508188843Trihelix transcription factor GT-1AGI-0835.927
Gn0031 AtAvailable marker ----OOAGI-0837.706
Gn0030 MDisagree by Marco analysis ------AGI-0837.823KmG-0837.758NAT-08230.069
Cp1200 MDisagree by Marco analysis O-----J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0838.604
Af1515 ------TP Ciclev10027760mscaffold_82083805320844872J C_unshiu_00883:mRNA_4.1C_unshiu_0088360978104832Argonaute 1AGI-0840.438
Sd0004 ------J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0840.459
Al0411 AAvailable marker O---OOTP Ciclev10029439mscaffold_81976007719761961J C_unshiu_00011:mRNA_19.2C_unshiu_00011188649189649Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0840.857
Al0324 MDisagree by Marco analysis ------TP Ciclev10029315mscaffold_82042428720425903J C_unshiu_00320:mRNA_1.2C_unshiu_003201275814314Hypothetical proteinAGI-0841.127NAT-08231.019RP-0817.081
Ov0125 AAvailable marker ----OOTP Ciclev10028359mscaffold_82035223220354410J C_unshiu_00320:mRNA_8.1C_unshiu_003208692988531Arogenate dehydrataseAGI-0841.398
Cp0703 ------TP Ciclev10029499mscaffold_81954654119549348J C_unshiu_01460:mRNA_6.1C_unshiu_014603568336517FerredoxinAGI-0843.089
Cp1084 OOthers ------J C_unshiu_01090:mRNA_3.1C_unshiu_010902308426817Sesquiterpene synthaseAGI-0844.577
Gn0100 ------TP Ciclev10028245mscaffold_81925962319261508J C_unshiu_00814:mRNA_2.1C_unshiu_008141398715768Putative lycopene beta cyclaseAGI-0844.669
Wy0039 AAvailable marker ----OOTP Ciclev10028965mscaffold_81882426218825514J C_unshiu_00459:mRNA_4.1C_unshiu_004593447534918Hypothetical proteinAGI-0845.276JtR-0816.276
Bf0415 ------J C_unshiu_00643:mRNA_7.1C_unshiu_00643115076117637BEL1-like homeodomain protein 1AGI-0846.736
Af1487 ------TP Ciclev10028531mscaffold_81815548118157658J C_unshiu_00251:mRNA_22.1C_unshiu_00251205180207288DnaJAGI-0847.330
Tf0353 MDisagree by Marco analysis O-----SI087TP Ciclev10018691mscaffold_33469666134702240J C_unshiu_00669:mRNA_17.2C_unshiu_00669126539133312Cell division cycle 5-like proteinAGI-0853.069
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Tf0336 ------TP Ciclev10029022mscaffold_81057467310578797J C_unshiu_02599:mRNA_1.1C_unshiu_025991036214310NAD(P)-linked oxidoreductase superfamily proteinAGI-0854.304
Cp0077 O-----TP Ciclev10015497mscaffold_298491339852098J C_unshiu_00049:mRNA_29.1C_unshiu_00049210181212829Altered inheritance of mitochondria protein 32AGI-0854.867
Gn0037 ------TP Ciclev10032578mscaffold_42104204921048279J C_unshiu_00010:mRNA_111.3C_unshiu_00010823068829158Agamous-like MADS-box protein AGL9 homologAGI-0855.656
Cp2237 AAvailable marker ----OOTP Ciclev10028314mscaffold_81319004113194829J C_unshiu_01736:mRNA_2.1C_unshiu_017361898623543Riboflavin biosynthesis protein ribBA, chloroplasticAGI-0855.965
Tf0013 OOthers OOO-OOSI161,SI362TP Ciclev10027769mscaffold_81340861013413938J C_unshiu_01226:mRNA_1.1C_unshiu_012262055925720DNA replication licensing factor MCM2AGI-0856.123
Fb0321 MDisagree by Marco analysis O-----TP Ciclev10027873mscaffold_868344876837762J C_unshiu_00918:mRNA_1.1C_unshiu_0091850107626Arginine decarboxylase 1AGI-0856.405JtR-0825.280
Tf0144 ------SI125,SI189,SI192TP Ciclev10028782mscaffold_880090008012045J C_unshiu_00682:mRNA_12.1C_unshiu_006828633489311Transcription factor bHLH121AGI-0856.439
Af1110 ------TP Ciclev10028599mscaffold_896568659660001J C_unshiu_01425:mRNA_1.1C_unshiu_014253335522N-carbamoylputrescine amidaseAGI-0856.690
Ov0314 AAvailable marker O---OOSI107TP Ciclev10029386mscaffold_881763718177435J C_unshiu_00728:mRNA_1.1C_unshiu_0072840704922Mannan polymerase complex subunit mnn9AGI-0856.724KmG-0858.356JtR-0821.829RP-0841.217
Vt0003 ------TP Ciclev10027667mscaffold_881536608174407J C_unshiu_00616:mRNA_3.1C_unshiu_006161080818470Hypothetical proteinAGI-0856.724
Tf0210 ------SI183TP Ciclev10004533mscaffold_91199328211999324J C_unshiu_00926:mRNA_13.1C_unshiu_00926108384111875Zinc finger protein NUTCRACKERAGI-0856.724
Gmom13 ------TP Ciclev10005787mscaffold_91322303413225922J C_unshiu_00620:mRNA_11.2C_unshiu_00620118042120892Ethylene-responsive transcription factor ERF114AGI-0856.724
Af1575 ------TP Ciclev10029551mscaffold_81752483517526697J C_unshiu_02252:mRNA_4.1C_unshiu_0225279979032Photosystem II reaction center W proteinAGI-0856.724
Af1052 O-----TP Ciclev10004444mscaffold_91280815412820311J C_unshiu_00508:mRNA_9.1C_unshiu_005084038558179Hypothetical proteinAGI-0856.724
Wy0015 O-----SI041TP Ciclev10028465mscaffold_81310125713103161J C_unshiu_02878:mRNA_1.1C_unshiu_02878919910715UDP-glycosyltransferase 73C5AGI-0856.724
Wy0045Wy0045.k ------TP Ciclev10028268mscaffold_895646989566326J C_unshiu_02764:mRNA_1.1C_unshiu_0276415292654Geraniol 10-hydroxylase-like proteinAGI-0856.724
Al0632 HDisagree on Clementine haploid genotype O-----TP Ciclev10028775mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeAGI-0856.724JtR-0818.952
Al0643 ------TP Ciclev10012685mscaffold_61112665811131076J C_unshiu_02977:mRNA_1.1C_unshiu_0297719502673Dolichyldiphosphatase 1AGI-0856.724
Cp0632 AAvailable marker O---OOTP Ciclev10007941mscaffold_12769893427703620J C_unshiu_00237:mRNA_7.1C_unshiu_002374093045531Protein translocase subunit SecYAGI-0856.724
Em0003 ------TP Ciclev10011201mscaffold_61984088119844299J C_unshiu_00043:mRNA_48.1C_unshiu_00043360776363775BEL1-like homeodomain protein 1AGI-0856.724
Ov0104 AAvailable marker O---OOSI216TP Ciclev10004850mscaffold_91344033213442904J C_unshiu_02379:mRNA_2.1C_unshiu_023792290625482Obtusifoliol 14-alpha demethylaseAGI-0856.724JtR-0828.207
Fb0389 ------TP Ciclev10014121mscaffold_22517966825188103J C_unshiu_00087:mRNA_31.1C_unshiu_00087209767218135Putative pesticidal crystal cry8Ba-likeAGI-0856.850
Mf0058 T3 or more alleleic model ------TP Ciclev10022378mscaffold_34681881746822856J C_unshiu_00053:mRNA_58.1C_unshiu_00053481338485184Nitrogen regulatory protein P-IIAGI-0857.196JtR-0539.516
Bf0409 ------J C_unshiu_00616:mRNA_6.1C_unshiu_006167217179153Disease resistance protein (CC-NBS-LRR class) family proteinAGI-0857.386
Tf0325 OOthers O-----TP Ciclev10029355mscaffold_867004416703748J C_unshiu_02974:mRNA_2.1C_unshiu_029741014213418B-box type zinc finger family proteinAGI-0857.386
Af1398 ------TP Ciclev10030393mscaffold_878993767902959J C_unshiu_00887:mRNA_6.1C_unshiu_008874912057547Hypothetical proteinAGI-0857.551
Tf0290 AAvailable marker O---OOTP Ciclev10029354mscaffold_81806476118071003J C_unshiu_00251:mRNA_10.1C_unshiu_00251118858124101Putative axial regulator YABBY 2AGI-0857.802
Bf0115 O-----SI054,SI295TP Ciclev10029066mscaffold_863172056322458J C_unshiu_00484:mRNA_11.3C_unshiu_004844821654250Squalene synthaseAGI-0858.587NAT-08117.717
Gn0058 ------TP Ciclev10029531mscaffold_81129775411299510J C_unshiu_00424:mRNA_23.1C_unshiu_00424213541217268Hypothetical proteinAGI-0859.107
Af1486 ------TP Ciclev10029576mscaffold_81751092617513265J C_unshiu_00962:mRNA_1.1C_unshiu_009624342684Prefoldin subunit 4AGI-0859.562
Gn0063 OOthers O-----TP Ciclev10019925mscaffold_34093772540942854J C_unshiu_00735:mRNA_14.1C_unshiu_0073599621103733Violaxanthin de-epoxidaseAGI-0860.140KmG-0731.750
Tf0405 ------TP Ciclev10027952mscaffold_860258026031497J C_unshiu_00220:mRNA_2.1C_unshiu_002204814853214BEL1-like homeodomain protein 6AGI-0861.643
Bf0226 MDisagree by Marco analysis O-----TP Ciclev10008869mscaffold_12365478523658857J C_unshiu_00175:mRNA_30.1C_unshiu_00175321759325671SEC14 cytosolic factorAGI-0863.341
Af1416 ------TP Ciclev10029140mscaffold_837386073741747J C_unshiu_00589:mRNA_10.1C_unshiu_00589131180134227Embryo defective 1273, putative isoform 1AGI-0868.834
Lg2002 ------TP Ciclev10028055mscaffold_826464582649562J C_unshiu_00152:mRNA_44.1C_unshiu_00152294607297615Phosphoglycerate dehydrogenaseAGI-0869.974
Wy0004 ------J C_unshiu_02819:mRNA_2.1C_unshiu_0281927284118CXE carboxylesteraseAGI-0870.463NAT-08265.434
Cp1144 OOthers ------TP Ciclev10028086mscaffold_826499912655756J C_unshiu_00152:mRNA_43.1C_unshiu_00152288550294174Sodium:hydrogen antiporter 1 isoform 1AGI-0870.995
Tf0250 AAvailable marker O---OOTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-AAGI-0873.105
Gn0033 MDisagree by Marco analysis ------TP Ciclev10028247mscaffold_825618452563605J C_unshiu_00363:mRNA_2.1C_unshiu_003631466316198Limonoid UDP-glucosyltransferase-like proteinAGI-0873.527KmG-0886.664NAT-08286.620
Lp0226 O-----SI210TP Ciclev10027999mscaffold_828318322837109J C_unshiu_00152:mRNA_19.1C_unshiu_00152138714144356Embryonic polyadenylate-binding proteinAGI-0873.527
Al0515 Bno homozygous cultivar with minor allele O-----SI178TP Ciclev10030023mscaffold_826731352674232J C_unshiu_00152:mRNA_38.1C_unshiu_00152273851275034DNA-damage-repair/toleration protein DRT100AGI-0873.663JtR-0814.154NAT-08110.596
Fb0293 ------SI198,SI374J C_unshiu_00152:mRNA_37.1C_unshiu_00152259580269499Hypothetical proteinAGI-0873.663
Al0517 AAvailable marker ----OOTP Ciclev10028293mscaffold_825724392574295J C_unshiu_00363:mRNA_1.1C_unshiu_0036358927583Limonoid glucosyltransferaseAGI-0874.016JtR-0815.435
Cp0603 MDisagree by Marco analysis O-----TP Ciclev10028998mscaffold_823496552354496J C_unshiu_00363:mRNA_34.1C_unshiu_00363217631222409Hop-interacting protein THI043AGI-0875.684
Lg2004 ------TP Ciclev10028785mscaffold_825997172602090J C_unshiu_00152:mRNA_53.1C_unshiu_00152347645349890Cinnamyl alcohol dehydrogenaseAGI-0876.045
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Gn0049 ------TP Ciclev10028366mscaffold_816044601606311J C_unshiu_00024:mRNA_95.1C_unshiu_00024699386701126DUF1005 family proteinAGI-0877.688JtR-0817.757
Edw002 ------TP Ciclev10029316mscaffold_820123292014782J C_unshiu_00024:mRNA_48.2C_unshiu_00024335678337129LIM transcription factorAGI-0877.720
Cp0297 ------TP Ciclev10028989mscaffold_821354452138606J C_unshiu_00024:mRNA_26.2C_unshiu_00024197656201866ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0878.209
Fb0246 ------TP Ciclev10029680mscaffold_824034922406922J C_unshiu_00363:mRNA_27.1C_unshiu_00363170901174318Hypothetical proteinAGI-0880.078
Af1362 ------TP Ciclev10027931mscaffold_828889922895645J C_unshiu_00152:mRNA_9.1C_unshiu_001527256486513Hypothetical proteinAGI-0880.366
Al0402 AAvailable marker O---OOJ C_unshiu_00008:mRNA_88.1C_unshiu_00008564906567158Peptide upstream ORF protein, putativeAGI-0881.190KmG-0444.163NAT-0428.388
Tf0356 ------SI134,SI160TP Ciclev10029063mscaffold_89982891001763J C_unshiu_00041:mRNA_95.3C_unshiu_00041588335591780Basic-leucine zipper (BZIP) transcription factor familyAGI-0883.743
Gn0018 ------TP Ciclev10030969mscaffold_450535405061039J C_unshiu_00616:mRNA_15.1C_unshiu_0061699349106841V-type H+-transporting ATPase subunit AAGI-0884.345KmG-0216.986
Cp0059 O-----TP Ciclev10031015mscaffold_42307572823081009J C_unshiu_00001:mRNA_13.1C_unshiu_000018982896147Protein NLRC3AGI-0886.856
Tf0195 MDisagree by Marco analysis O-----TP Ciclev10030351mscaffold_86799774191J C_unshiu_01137:mRNA_4.1C_unshiu_011373083736569AT-rich interactive domain-containing protein 3AGI-0887.683
Ov0305 MDisagree by Marco analysis O-----SI028,SI292TP Ciclev10012499mscaffold_61690949216912088J C_unshiu_00008:mRNA_65.1C_unshiu_0000836694336950440S ribosomal protein S4AGI-0888.433KmG-0445.755RP-0415.410
Wy0059Wy0059.em ------TP Ciclev10012904mscaffold_685624318564865J C_unshiu_00232:mRNA_33.1C_unshiu_00232292640294683DUF538 family proteinAGI-0891.502
Tf0311 AAvailable marker O---OOTP Ciclev10011596mscaffold_61593201615936176J C_unshiu_00779:mRNA_8.1C_unshiu_007797810581377Auxin transporter-like protein 2AGI-0891.890
Bf0123 ------SI141TP Ciclev10011473mscaffold_61580386415809998J C_unshiu_00284:mRNA_13.1C_unshiu_00284114758120828Sulfoquinovosyldiacylglycerol 2AGI-0892.221RP-0410.226
Af1062 ------TP Ciclev10012766mscaffold_61489293914897320J C_unshiu_00102:mRNA_47.1C_unshiu_00102331172333886PRA1 family protein A1AGI-0893.624
Af1345 ------TP Ciclev10013023mscaffold_61308231313084012J C_unshiu_01022:mRNA_2.1C_unshiu_01022856610161Histone H2AAGI-0893.624
Al0601 ------J C_unshiu_00065:mRNA_8.1C_unshiu_000653926843421Probable GTP diphosphokinase RSH2, chloroplasticAGI-0893.624
Tf0062 Bno homozygous cultivar with minor allele O--O--SI223TP Ciclev10012377mscaffold_61182647211830875J C_unshiu_00207:mRNA_24.2C_unshiu_00207252955255240Transcription factor ASG4AGI-0893.624
Mf0076 AAvailable marker ----OOTP Ciclev10012554mscaffold_61170419911706676J C_unshiu_00207:mRNA_15.1C_unshiu_00207132539134984Cytosolic ascorbate peroxidaseAGI-0893.624
Tf0315 AAvailable marker O---OOTP Ciclev10012089mscaffold_61408718114090115J C_unshiu_00287:mRNA_20.1C_unshiu_00287221944222997PhantasticaAGI-0893.657
Al0422 T3 or more alleleic model O-----TP Ciclev10013176mscaffold_61449547314496662J C_unshiu_00032:mRNA_34.1C_unshiu_00032369423370581Subtilisin inhibitor 1, putativeAGI-0893.695
Cp1267 MDisagree by Marco analysis ------TP Ciclev10011346mscaffold_679837887991526J C_unshiu_02325:mRNA_1.1C_unshiu_0232516429359Riboflavin biosynthesis protein RibDAGI-0894.382
Gn0054 ------AGI-0895.075KmG-0464.581
Tf0271 Bno homozygous cultivar with minor allele OO-O--TP Ciclev10010976mscaffold_61170795311715646J C_unshiu_01619:mRNA_7.1C_unshiu_016194234750640CCR4-NOT transcription complex subunit 4AGI-0895.613
Cp0052 OOthers O-----J C_unshiu_01597:mRNA_11.1C_unshiu_015972947142354Glucose-6-phosphate dehydrogenase 4AGI-0896.035
Tf0348 ------SI118TP Ciclev10012920mscaffold_61161199411614367J C_unshiu_00236:mRNA_46.1C_unshiu_00236271647281392Nuclear transcription factor Y subunit B-8AGI-0896.565
Tf0085 ------SI094,SI211TP Ciclev10012088mscaffold_620675862073007J C_unshiu_00176:mRNA_13.1C_unshiu_001768997597731Transcription factor-like protein DPBAGI-0896.807
Bf1185 ------TP Ciclev10003304mscaffold_54099352040993992NoAGI-09
Fb0326 O-----TP Ciclev10002506mscaffold_54305157943053394J C_unshiu_00370:mRNA_38.1C_unshiu_00370207050209216Cell division control protein 2AGI-098.959RP-0978.225
Tf0054 O-----SI238TP Ciclev10000100mscaffold_54310899843114214J C_unshiu_01422:mRNA_2.1C_unshiu_014221515033598Hypothetical proteinAGI-0921.045
Bf0164 ULess informative for main cultivars O-----SI263TP Ciclev10000615mscaffold_54306044243066562J C_unshiu_00370:mRNA_39.2C_unshiu_00370217887223455Pyrophosphate-dependent phosphofructokinase alpha subunitAGI-0921.471NAT-09111.981RP-0994.065
Af1060 O-----TP Ciclev10000400mscaffold_54291837142923480J C_unshiu_00370:mRNA_16.1C_unshiu_003707528379772Tonoplast monosaccharide transporter 2AGI-0923.647
Lg2005 ------TP Ciclev10002751mscaffold_54218771442189727J C_unshiu_00192:mRNA_45.1C_unshiu_00192319592321612SCF ubiquitin ligase, SKP1 componentAGI-0934.172
Tf0019 ------SI056,SI347TP Ciclev10001255mscaffold_54188129741883386J C_unshiu_00009:mRNA_161.1C_unshiu_0000910493241051358C2H2-like zinc finger proteinAGI-0934.799
Vs0003 AAvailable marker ----OOSI077J C_unshiu_00009:mRNA_117.1C_unshiu_00009675718677501Cysteine proteinase RD19aAGI-0935.312KmG-0972.447NAT-0993.467
Tf0088 MDisagree by Marco analysis O-----SI066TP Ciclev10001291mscaffold_54127520141278829J C_unshiu_00127:mRNA_34.1C_unshiu_00127251592254627Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1AGI-0935.763
Vs0002 MDisagree by Marco analysis ------SI103,SI115TP Ciclev10000046mscaffold_54118418041190033J C_unshiu_00127:mRNA_46.1C_unshiu_00127341430344325Hypothetical proteinAGI-0936.685KmG-0973.930JtR-0768.221
Al0618 AAvailable marker ----OOTP Ciclev10000916mscaffold_54087279340877775J C_unshiu_00123:mRNA_34.1C_unshiu_00123204269222067Phosphatase 2c, putative isoform 6AGI-0938.004KmG-0973.330
Cp0506 AAvailable marker O---OOTP Ciclev10001978mscaffold_54083260340834625NoAGI-0938.656
Fb0357 O-----SI384TP Ciclev10001633mscaffold_54055022240554434J C_unshiu_00889:mRNA_6.1C_unshiu_008894417551825Hypothetical proteinAGI-0939.104
If0208 AAvailable marker -O-OOOSI083,SI317TP Ciclev10001680mscaffold_54062824440630241J C_unshiu_00234:mRNA_9.1C_unshiu_002349498899176TRNA-processing ribonuclease BNAGI-0939.296KmG-0972.036JtR-09S115.150NAT-0989.867
Fb2156Fb2156.lg O-----TP Ciclev10000537mscaffold_53999223439996269J C_unshiu_00096:mRNA_31.1C_unshiu_00096198494202358Poly(A) binding protein 6, putative isoform 1AGI-0941.254
Cp0249 ------TP Ciclev10001084mscaffold_53948064739484776J C_unshiu_00457:mRNA_14.1C_unshiu_004579654099356Acetyltransferase component of pyruvate dehydrogenase complexAGI-0941.336
Cp1143 MDisagree by Marco analysis O-----TP Ciclev10000651mscaffold_53985853139862402J C_unshiu_00096:mRNA_9.1C_unshiu_000967071373505Phosphoglycerate dehydrogenaseAGI-0942.158
Tf0016 ------SI345TP Ciclev10001979mscaffold_53983998439841860J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorAGI-0942.158
Gn0021 AAvailable marker ----OOTP Ciclev10000597mscaffold_53963011139635609J C_unshiu_01033:mRNA_10.1C_unshiu_010334779953166Somatic embryogenesis receptor kinase 1AGI-0942.621KmG-0968.220JtR-09S97.453NAT-0983.381
Tf0069 ------SI199TP Ciclev10001715mscaffold_53856619238571337J C_unshiu_00183:mRNA_2.1C_unshiu_001832013426910Transcription factor RF2bAGI-0942.789RP-0977.126
Tf0360 ------SI112TP Ciclev10000627mscaffold_53866912338672110J C_unshiu_00430:mRNA_12.1C_unshiu_0043098615101120Trihelix transcription factor GT-2AGI-0943.140
Fb0138 ------TP Ciclev10000092mscaffold_53849902438504883J C_unshiu_00183:mRNA_7.1C_unshiu_001838654094072Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domainAGI-0943.862KmG-0954.172SA-0950.659
Tf0003.2 OOthers O-----TP Ciclev10002471mscaffold_53780887837811097J C_unshiu_00238:mRNA_14.1C_unshiu_00238116142129209Hypothetical proteinAGI-0944.054
Tf0084 ------TP Ciclev10000121mscaffold_53828804738296128J C_unshiu_00183:mRNA_40.1C_unshiu_00183305878313881Transcription elongation factor SPT5AGI-0944.096
Tf0070 OOthers O-----SI277TP Ciclev10002250mscaffold_53974875439753073J C_unshiu_01089:mRNA_6.1C_unshiu_010892264326826Basic helix-loop-helix family proteinAGI-0945.029
Tf0332 ------SI081TP Ciclev10001976mscaffold_53758683437589255J C_unshiu_00985:mRNA_11.1C_unshiu_009859771299966NAC domain-containing protein 2AGI-0945.548
Ov0407 AAvailable marker ----OOTP Ciclev10000563mscaffold_53704341737051080J C_unshiu_00773:mRNA_1.1C_unshiu_00773788815416OSBP(Oxysterol binding protein)-related protein 1C isoform 3AGI-0946.097KmG-0948.606JtR-09S66.176RP-0976.027
Wy0003 AAvailable marker O---OOTP Ciclev10001202mscaffold_53718965337192231J C_unshiu_00144:mRNA_30.1C_unshiu_00144215223217733AminotransferaseAGI-0946.823KmG-0952.581NAT-0969.467
If0211 AAvailable marker ----OOSI226NoAGI-0947.410KmG-0960.856
Cp0257 ------TP Ciclev10001536mscaffold_53652607336528589J C_unshiu_00657:mRNA_4.1C_unshiu_006575219954744Trehalose-phosphataseAGI-0948.390
Af1482 ------TP Ciclev10001945mscaffold_53655050736552800J C_unshiu_00657:mRNA_2.2C_unshiu_006572854130831DRE binding transcription factorAGI-0949.255
Ov0322 ULess informative for main cultivars ------TP Ciclev10003485mscaffold_53639898836399239J C_unshiu_00241:mRNA_9.1C_unshiu_002413954640639Microsomal signal peptidase 12 kDa proteinAGI-0950.810KmG-0942.179JtR-09S62.873RP-0970.369
Fb0153 ------TP Ciclev10002324mscaffold_53634798636350649J C_unshiu_02857:mRNA_2.1C_unshiu_028571199414648Melanoma-associated antigen G1AGI-0951.925RP-0971.621
Bf0218 O-----SI232TP Ciclev10000452mscaffold_53603699036048487J C_unshiu_00406:mRNA_20.1C_unshiu_00406134274145322IsoamylaseAGI-0953.205KmG-0937.847RP-0970.349
Wy0030 AAvailable marker O---OOTP Ciclev10001854mscaffold_53622931036230518J C_unshiu_00619:mRNA_10.1C_unshiu_006198721388404EXORDIUM like 2AGI-0953.205KmG-0944.154JtR-09S63.577NAT-0965.585
Cp1162 AAvailable marker ----OOTP Ciclev10001345mscaffold_53590818135912917J C_unshiu_00255:mRNA_35.1C_unshiu_00255260170264872Phosphoribosylaminoimidazolesuccinocarboxamide synthaseAGI-0953.232RP-0969.673
Cp1477 ------TP Ciclev10001770mscaffold_53609584436099890J C_unshiu_01173:mRNA_9.1C_unshiu_011736297766775Thylakoid lumenal 29 kDa protein, chloroplasticAGI-0954.123
Af2596 ------TP Ciclev10002840mscaffold_53815497538155769J C_unshiu_00319:mRNA_29.1C_unshiu_00319189073189599Basic blue proteinAGI-0957.830
Fb0372 ------SI343,SI052TP Ciclev10002666mscaffold_53512321335124730J C_unshiu_00042:mRNA_34.1C_unshiu_00042237022238272Ubiquitin-fold modifier-conjugating enzyme 1AGI-0959.896
Tf0151 AAvailable marker O---OOSI159,SI281TP Ciclev10002917mscaffold_53535733335359897NoAGI-0960.528RP-0941.892
Tf0061 ------SI150,SI186TP Ciclev10001592mscaffold_53515969035164384J C_unshiu_00764:mRNA_4.1C_unshiu_007643089936628Auxin-responsive protein IAA8AGI-0961.651
Af1205 ------TP Ciclev10002396mscaffold_53416172134162652J C_unshiu_00196:mRNA_4.1C_unshiu_001961521916117Basic helix-loop-helix DNA-binding superfamily protein, putativeAGI-0964.754
Af1377 ------TP Ciclev10001143mscaffold_53278033932783349J C_unshiu_00224:mRNA_50.1C_unshiu_00224297837300694Seryl-tRNA synthetase (Serin-tRNA ligase)AGI-0970.624
Bf0195 ------SI369TP Ciclev10000780mscaffold_53106923731075092J C_unshiu_00422:mRNA_5.1C_unshiu_004223532240511Sodium/hydrogen exchanger 2AGI-0974.076
If0216 OOthers O-----SI174TP Ciclev10015257mscaffold_21287695212881843J C_unshiu_01838:mRNA_2.1C_unshiu_018382359431186Hypothetical proteinAGI-0974.076KmG-0126.420JtR-01S66.382RP-0929.224
Gn0065 Bno homozygous cultivar with minor allele O-----J C_unshiu_00021:mRNA_4.1C_unshiu_000213417838574Phytoene desaturaseAGI-0979.316
Al0207 OOthers ------TP Ciclev10020027mscaffold_343668024370111J C_unshiu_00186:mRNA_18.1C_unshiu_00186178635181547SNF1-related protein kinase regulatory subunit gamma-1AGI-0984.537JtR-09S9.929
Bf0029 MDisagree by Marco analysis ---O--SI193,SI283J C_unshiu_00564:mRNA_19.1C_unshiu_00564138967142178Limonene synthaseAGI-0984.912KmG-0924.379JtR-09S5.526
Fb0373 O-----TP Ciclev10000030mscaffold_564044636435349J C_unshiu_00034:mRNA_15.1C_unshiu_00034150102178260ATP-dependent RNA helicase DHX29AGI-0985.810KmG-0922.909JtR-09S7.995RP-090.104
Af1116 ------TP Ciclev10001154mscaffold_567490246753178J C_unshiu_00100:mRNA_44.1C_unshiu_00100361556365479Magnesium transporter MRS2-like proteinAGI-0985.810
Fb0110 O-----SI246TP Ciclev10000900mscaffold_585123808517835J C_unshiu_00033:mRNA_4.1C_unshiu_000333775543368Bifunctional protein thiEDAGI-0985.810KmG-0923.401JtR-09S5.362
Ov0111 AAvailable marker ----OOTP Ciclev10000069mscaffold_585322808539677J C_unshiu_00033:mRNA_6.1C_unshiu_000335767865071TSA: Wollemia nobilis transcribed RNA sequenceAGI-0985.810KmG-0911.923JtR-09S6.157RP-0920.238
Cp0747 ------TP Ciclev10015418mscaffold_21108496011088767J C_unshiu_00184:mRNA_32.1C_unshiu_00184282295285277ATP synthase protein IAGI-0985.816
Tf0149 HDisagree on Clementine haploid genotype O-----SI128,SI269TP Ciclev10002290mscaffold_52940084629403554J C_unshiu_00110:mRNA_26.1C_unshiu_00110160409163111Auxin-responsive protein IAA16AGI-0985.976RP-0932.826
Tf0093.2 AAvailable marker O---OOTP Ciclev10002569mscaffold_52941314329414562J C_unshiu_00110:mRNA_25.1C_unshiu_00110149681150624Auxin-responsive protein IAA4AGI-0986.512
Cp1996 MDisagree by Marco analysis ------TP Ciclev10002770mscaffold_52946360429466318J C_unshiu_01370:mRNA_6.1C_unshiu_013704657449106Sec-independent protein translocase protein TatAAGI-0986.532RP-0933.820
Bf0413 ------J C_unshiu_00293:mRNA_16.1C_unshiu_00293231743233897Hypothetical proteinAGI-0986.996
Cp0065 O-----TP Ciclev10002793mscaffold_584351238435971J C_unshiu_01044:mRNA_2.1C_unshiu_0104471177963FerredoxinAGI-0986.996
Cp0419 AAvailable marker -O--OOTP Ciclev10002215mscaffold_52881531428816638J C_unshiu_00758:mRNA_1.1C_unshiu_007587944329ATP-dependent Clp protease, proteolytic subunit ClpPAGI-0988.739SA-0944.226
Af1645 ------TP Ciclev10000427mscaffold_524728052477375J C_unshiu_00127:mRNA_11.1C_unshiu_001275220762775Class I (E and Q) tRNA synthetaseAGI-0990.878
Af1437 ------TP Ciclev10002114mscaffold_514743961479079J C_unshiu_00060:mRNA_37.1C_unshiu_00060309328313345Short-chain alcohol dehydrogenaseAGI-0992.804
Tf0103 ------TP Ciclev10002094mscaffold_5354416357301J C_unshiu_01920:mRNA_2.1C_unshiu_019201014012134Putative NAC domain-containing protein 94AGI-0993.685
Af1223 ------TP Ciclev10009839mscaffold_12711141227114276J C_unshiu_00347:mRNA_8.1C_unshiu_003476655579401Flavin-binding kelch domain F box proteinAGI-0997.668
Tf0166 ------SI156TP Ciclev10000524mscaffold_51968257919686163J C_unshiu_00050:mRNA_13.1C_unshiu_00050140837153470Hypothetical proteinAGI-09101.351
Ov0509 ULess informative for main cultivars O-----NoAGI-09102.280RP-0921.445
Tf0371 ------TP Ciclev10002081mscaffold_52037755220384333J C_unshiu_00913:mRNA_4.1C_unshiu_009133745043326Hypothetical proteinAGI-09102.280
Tf0130 ------TP Ciclev10001027mscaffold_51974013319745806J C_unshiu_00050:mRNA_15.1C_unshiu_00050195528200204Transcription factor GAMYBAGI-09103.217
Edp005 HDisagree on Clementine haploid genotype ------TP Ciclev10000211mscaffold_52120399421212595J C_unshiu_00020:mRNA_80.1C_unshiu_00020742433758888Retinoblastoma protein 2AGI-09105.195RP-0923.442
Tf0304 ------TP Ciclev10000491mscaffold_5953167960232J C_unshiu_00033:mRNA_32.1C_unshiu_00033311804317751Auxin response factorAGI-09113.306
Vs0015 OOthers ------J C_unshiu_00001:mRNA_84.1C_unshiu_00001561308564986Mitochondrial outer membrane protein porin of 34 kDaAGI-09115.452KmG-0934.185JtR-09S15.823
Cp1011 ------TP Ciclev10016354mscaffold_22534643925350875J C_unshiu_00087:mRNA_55.1C_unshiu_00087398683402763ZZ-type zinc finger-containing 3AGI-09115.692
Af1255 ------TP Ciclev10006003mscaffold_92806122128063450
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Bf0180 ------TP Ciclev10028147mscaffold_82111280421117215
Cp1050 ------TP Ciclev10032471mscaffold_415378351540818
Fb0346 ------TP Ciclev10021000mscaffold_320024272008126
Ov0129Ov0129.k ------TP Ciclev10030928mscaffold_427170142719856
Tf0442 ------TP Ciclev10029160mscaffold_82315829223161424
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1521 ------TP Ciclev10004680mscaffold_997997469804461
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Cp1056 ------TP Ciclev10012459mscaffold_62002437020027538
Lp0025 ------TP Ciclev10009567mscaffold_12581694925818472
Ov0301 Bno homozygous cultivar with minor allele ------SI078TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S23.526JtR-0519.932RP-0521.590
Tf0443 ------TP Ciclev10012193mscaffold_658867445892919
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Bf0183 O-----SI308TP Ciclev10005208mscaffold_952544165256826J C_unshiu_01106:mRNA_9.1C_unshiu_011067727579234Hypothetical protein
Cp1067 ------TP Ciclev10014572mscaffold_2188504192741
Lp0026 ------TP Ciclev10030880mscaffold_433232093331825
Ov0302Ov0301.2 ------TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factor
Tf0444 ------TP Ciclev10029022mscaffold_81057467310578797
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Cp1081 ------TP Ciclev10024992mscaffold_778266037829404
Lp0027 ------TP Ciclev10032174mscaffold_41496725414971449
Ov0303 ------TP Ciclev10011600mscaffold_62516085125164999
Tf0169 ------TP Ciclev10004115mscaffold_922844842302268
Tf0445 ------TP Ciclev10029260mscaffold_860650926068908
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Bf0189 ------J C_unshiu_00008:mRNA_66.1C_unshiu_00008372226374586FerritinRP-0415.774
Lp0028 ------TP Ciclev10014842mscaffold_22236254822366644
Ov0304 ------TP Ciclev10000702mscaffold_564823666484923
Tf0170 ------TP Ciclev10005681mscaffold_93123708931243866
Tf0446 ------TP Ciclev10020000mscaffold_34299025142995979
Af0005 ------TP Ciclev10005894mscaffold_924528532455181
Af1260 ------TP Ciclev10001188mscaffold_53886966638875561
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Bf0193 O-----SI100,SI109TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1RP-06.214.065
Lp0029 ------TP Ciclev10003645mscaffold_5329518331024
Tf0171 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0447 ------TP Ciclev10021000mscaffold_320024272008126
Af0006 ------TP Ciclev10001011mscaffold_53688310336887975
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Af1526 ------TP Ciclev10001454mscaffold_53885254738855263
Al0221 ------
Cp1086 ------TP Ciclev10025935mscaffold_723900102391658
Lp0030 ------TP Ciclev10031831mscaffold_42318570323187916
Tf0448 ------TP Ciclev10026715mscaffold_7252320254049
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Bf0197 ------TP Ciclev10025476mscaffold_756543765658039
Cp1093 ------TP Ciclev10009636mscaffold_11669697916699623
Fb0374 ------TP Ciclev10002014mscaffold_567773226781162
Ov0307 OOthers ------TP Ciclev10015790mscaffold_249370474940138
Tf0173 O-----TP Ciclev10015413mscaffold_22609734326099320J C_unshiu_00259:mRNA_35.1C_unshiu_00259219790227265Hypothetical proteinRP-06.128.110
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Af1263 ------TP Ciclev10005448mscaffold_92849434828496251
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Al0223 ------TP Ciclev10011771mscaffold_61743827017440122J C_unshiu_00008:mRNA_127.1C_unshiu_00008890026891371CBL-interacting serine/threonine-protein kinase 11RP-0417.965
Bf0200 OOthers ------SI335TP Ciclev10014367mscaffold_22902243329030724J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Lp0032 Bno homozygous cultivar with minor allele ------SI286J C_unshiu_00679:mRNA_13.1C_unshiu_00679124222132199CwfJ-like family protein, putative isoform 1
Ov0308 ------TP Ciclev10032476mscaffold_41673015016735004
Tf0175 ------TP Ciclev10010825mscaffold_150545515056146
Tf0450 ------TP Ciclev10021535mscaffold_35039957150401808
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Af1529 ------TP Ciclev10005711mscaffold_92122879121231253
Bf0201 ------TP Ciclev10015180mscaffold_22937056029376244
Cp1113 ------TP Ciclev10004638mscaffold_9