Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
Bf1207 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22912695 | 22913798 | ![]() | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
Bf0013 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23111733 | 23116067 | No | AGI-01 | RP-01 | 47.360 | ||||||||||||||
Tf0449 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28254307 | 28257305 | ![]() | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
Tf0307 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25395688 | 25397278 | ![]() | C_unshiu_00442 | 209015 | 209831 | Myb domain protein 5 | AGI-01 | 23.266 | ||||||||||
Cp2158 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22847397 | 22852110 | ![]() | C_unshiu_00103 | 254015 | 258614 | Trigger factor type chaperone family protein | AGI-01 | 24.422 | ||||||||||
Af1084 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25716862 | 25720071 | ![]() | C_unshiu_00066 | 369928 | 382143 | Hypothetical protein | AGI-01 | 24.643 | |||||||||||
Af1568 | - | - | - | - | - | - | ![]() | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | ![]() ![]() | scaffold_1 | 24898769 | 24905716 | ![]() | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
Wy0028 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_1 | 25001341 | 25004726 | ![]() | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
Fb0143 | - | - | - | - | - | - | SI361 | ![]() ![]() | scaffold_1 | 25283807 | 25291472 | ![]() | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | ![]() ![]() | scaffold_1 | 25592494 | 25593617 | ![]() | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
Tf0049 | - | - | - | - | - | - | SI328 | ![]() ![]() | scaffold_1 | 24273993 | 24277800 | ![]() | C_unshiu_00047 | 212549 | 221653 | WD domain protein-like | AGI-01 | 26.841 | ||||||||||
Ks9001 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24548109 | 24552107 | ![]() | C_unshiu_00047 | 475125 | 488565 | Inter-alpha-trypsin inhibitor heavy chain-related isoform 1 | AGI-01 | 27.192 | JtR-01S | 61.287 | |||||||||
Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | ![]() ![]() | scaffold_1 | 23776796 | 23782088 | ![]() | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
Fb0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23487200 | 23497316 | ![]() | C_unshiu_00338 | 134033 | 144369 | Hypothetical protein | AGI-01 | 28.325 | |||||||||||
Tf0406 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23463843 | 23470911 | ![]() | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | AGI-01 | 28.515 | ||||||||||
Af1554 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23753759 | 23756754 | ![]() | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
Bf0036 | AAvailable marker | O | O | - | O | O | O | ![]() ![]() | scaffold_1 | 22840947 | 22844111 | ![]() | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
Af1467 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24171632 | 24175378 | ![]() | C_unshiu_00047 | 116658 | 120038 | Putative amino acid permease 7 | AGI-01 | 29.784 | |||||||||||
Lp0237 | Lp0237.k | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25987803 | 25992258 | ![]() | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
Lp0211 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ![]() | C_unshiu_00066 | 279404 | 280861 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 | AGI-01 | 30.175 | RP-01 | 24.533 | |||||||||
Af1094 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ![]() | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | AGI-01 | 30.175 | |||||||||||
Gn0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25880824 | 25887976 | ![]() | C_unshiu_00005 | 841899 | 847089 | Sucrose phosphate synthase | AGI-01 | 30.293 | KmG-01 | 17.862 | |||||||||
Fb0103 | OOthers | O | - | - | - | - | - | SI155 | ![]() ![]() | scaffold_1 | 22758712 | 22761740 | ![]() | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
Al0407 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 26576059 | 26578193 | ![]() | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
Tf0163 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 26740822 | 26744016 | ![]() | C_unshiu_00105 | 316978 | 320206 | RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 | AGI-01 | 31.240 | ||||||||||
Bf0033 | - | - | - | - | - | - | SI356,SI379 | ![]() ![]() | scaffold_1 | 27204998 | 27211059 | ![]() | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
Wy0063 | Wy0063.em | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 29395094 | 29402560 | ![]() | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | AGI-01 | 33.445 | ||||||||||
Cp0748 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 34673451 | 34674900 | ![]() | C_unshiu_00669 | 103814 | 104779 | Light-dependent short hypocotyls protein | AGI-01 | 33.562 | |||||||||||
Tf0124 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27457358 | 27462893 | ![]() | C_unshiu_00237 | 259818 | 273281 | Dethiobiotin synthase | AGI-01 | 34.062 | |||||||||||
Tf0077 | O | - | - | - | - | - | SI135 | ![]() ![]() | scaffold_1 | 28433972 | 28437921 | ![]() | C_unshiu_00590 | 86430 | 90131 | WRKY | AGI-01 | 34.814 | ||||||||||
Wy0026 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28321342 | 28323314 | ![]() | C_unshiu_02224 | 30176 | 31684 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AGI-01 | 35.518 | ||||||||||
Cp0671 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_1 | 28353948 | 28356507 | ![]() | C_unshiu_00590 | 165626 | 168046 | UPF0133 protein | AGI-01 | 36.113 | ||||||||||
Al0029 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() | C_unshiu_00305 | 69938 | 73026 | Basic helix-loop-helix transcription factor | AGI-01 | 37.357 | JtR-01S | 50.000 | ||||||||||||
Al0215 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21918726 | 21922966 | ![]() | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
Al0525 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254023 | ![]() | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
Bf0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21082902 | 21086082 | ![]() | C_unshiu_00487 | 113166 | 115416 | Thiazole biosynthetic enzyme | AGI-01 | 43.164 | RP-01 | 56.137 | |||||||||
Af1424 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 18688873 | 18690138 | ![]() | C_unshiu_00137 | 354434 | 355481 | CFE protein | AGI-01 | 43.613 | |||||||||||
Tf0058 | - | - | - | - | - | - | SI257 | ![]() ![]() | scaffold_1 | 20885102 | 20889283 | ![]() | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
Bf0182 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 17831333 | 17834889 | ![]() | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
Af1622 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 18117264 | 18119451 | ![]() | C_unshiu_00187 | 141733 | 143877 | Protochlorophyllide reductase, chloroplastic | AGI-01 | 54.754 | |||||||||||
Fb0275 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 15883118 | 15887517 | ![]() | C_unshiu_00288 | 55910 | 60461 | Malate dehydrogenase | AGI-01 | 55.687 | |||||||||||
Tf0059 | - | - | - | - | - | - | SI101 | ![]() ![]() | scaffold_1 | 12883722 | 12897805 | ![]() | C_unshiu_00450 | 36956 | 58462 | AGC family Serine/Threonine kinase family protein | AGI-01 | 56.416 | ||||||||||
Af1370 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8822834 | 8826308 | ![]() | C_unshiu_00579 | 46507 | 50108 | Plasma membrane | AGI-01 | 56.590 | |||||||||||
Bf1192 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 10678653 | 10684627 | ![]() | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
Wy0008 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 9297360 | 9299641 | No | AGI-01 | 57.863 | KmG-01 | 43.003 | JtR-01S | 99.300 | ||||||||||
Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | ![]() ![]() | scaffold_1 | 10946316 | 10949617 | ![]() | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
Al0619 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2234066 | 2238313 | ![]() | C_unshiu_00311 | 55933 | 60057 | TLP domain class transcription factor | AGI-01 | 57.863 | KmG-01 | 39.698 | |||||||||
Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | ![]() ![]() | scaffold_1 | 18068297 | 18070262 | ![]() | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
Tf0066 | - | - | - | - | - | - | SI221 | ![]() ![]() | scaffold_1 | 18270818 | 18273015 | ![]() | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
Al0513 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8046181 | 8049306 | ![]() | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
Fb0478 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 14592248 | 14596429 | ![]() | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
Lp0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6128952 | 6131314 | ![]() | C_unshiu_01202 | 57691 | 60017 | Acyl-CoA N-acyltransferases superfamily protein isoform 1 | AGI-01 | 61.636 | NAT-01S | 60.000 | |||||||||
Mf0033 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_1 | 6227617 | 6228389 | ![]() | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | ![]() ![]() | scaffold_1 | 4722889 | 4726339 | ![]() | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
Al0639 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 41703787 | 41708779 | ![]() | C_unshiu_00009 | 874868 | 888901 | IQ calmodulin-binding motif protein | AGI-01 | 70.494 | KmG-01 | 48.992 | JtR-01S | 110.675 | NAT-01S | 94.639 | RP-01 | 28.746 | ||
Cp0741 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 3746864 | 3749903 | ![]() | C_unshiu_00055 | 168281 | 172005 | Ferrochelatase | AGI-01 | 75.964 | ||||||||||
Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | ![]() ![]() | scaffold_1 | 1070373 | 1072218 | ![]() | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
Cp0672 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28262202 | 28267878 | ![]() | C_unshiu_00005 | 170218 | 174432 | Putative eukaryotic translation initiation factor 4 gamma | AGI-01 | 101.472 | |||||||||||
Wy0055 | Wy0055.em | - | - | - | - | - | - | ![]() | C_unshiu_00005 | 686926 | 696896 | Neurochondrin | AGI-01 | 118.691 | ||||||||||||||
Gn0097 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 10246239 | 10248409 | ![]() | C_unshiu_00372 | 77039 | 79209 | Naringenin-chalcone synthase | AGI-02 | ||||||||||||
Af0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8447414 | 8453714 | ![]() | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
Tf0196 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7796591 | 7799786 | ![]() | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8603450 | 8610239 | ![]() | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
Tf0067 | OOthers | O | - | - | - | - | - | SI033,SI187 | ![]() ![]() | scaffold_7 | 8438702 | 8442381 | ![]() | C_unshiu_00290 | 74194 | 77624 | Transcription factor | AGI-02 | 5.104 | |||||||||
Bf0142 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8508837 | 8516759 | ![]() | C_unshiu_00290 | 151884 | 158772 | Class III homeodomain leucine zipper protein | AGI-02 | 5.104 | |||||||||||
Cp1852 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22711668 | 22715696 | ![]() | C_unshiu_00103 | 116559 | 121057 | Cell differentiation protein rcd1 | AGI-02 | 9.592 | |||||||||||
Tf0172 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9976621 | 9980176 | ![]() | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
Af1556 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11107041 | 11109191 | ![]() | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
Em0004 | Fb1532.em | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11585699 | 11587422 | ![]() | C_unshiu_01211 | 67756 | 69149 | Transparent testa glabra 1 | AGI-02 | 11.835 | ||||||||||
Vt0030 | Vt0030.k | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11271705 | 11277014 | ![]() | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
Cp1791 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11604464 | 11607028 | ![]() | C_unshiu_00582 | 10067 | 11470 | NBS-LRR type disease resistance protein | AGI-02 | 12.969 | ||||||||||
Af1100 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 10853487 | 10855215 | ![]() | C_unshiu_00451 | 120744 | 122474 | Ran BP2/NZF zinc finger-like superfamily protein isoform 1 | AGI-02 | 13.326 | |||||||||||
Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | ![]() ![]() | scaffold_2 | 290799 | 294122 | ![]() | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
Cp0100 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 10471136 | 10474241 | ![]() | C_unshiu_00924 | 50269 | 52902 | Tetratricopeptide repeat-like superfamily protein | AGI-02 | 14.111 | |||||||||||
Wy0060 | Wy0060.em | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46998745 | 47002683 | ![]() | C_unshiu_00023 | 7129 | 11067 | Pto kinase interactor 1 | AGI-02 | 14.597 | ||||||||||
Al0037 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 14310100 | 14311942 | ![]() | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | |||||||||||
Al0037.2 | Al0037.k | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 14310100 | 14311942 | ![]() | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | ||||||||||
Gmom24 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
Lp0004 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15376818 | 15378771 | ![]() | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
Tf0454 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 16108723 | 16113463 | ![]() | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
Cp0114 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15446269 | 15449214 | ![]() | C_unshiu_01960 | 1400 | 4642 | DS12 from 2D-PAGE of leaf protein, putative | AGI-02 | 21.337 | |||||||||||
Af3023 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16185818 | 16187223 | ![]() | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | AGI-02 | 21.337 | |||||||||||
Tf0125 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16249523 | 16255343 | ![]() | C_unshiu_01042 | 86577 | 91963 | Ubiquitin-specific protease family C19 protein | AGI-02 | 21.337 | |||||||||||
Af1207 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15605065 | 15607345 | ![]() | C_unshiu_00628 | 144683 | 146646 | Flavonoid 3'-monooxygenase | AGI-02 | 21.344 | |||||||||||
Af1003 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15605852 | 15610028 | ![]() | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
Gmom29 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 12677414 | 12680761 | ![]() | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
Cp2232 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 17809523 | 17810742 | ![]() | C_unshiu_01815 | 28593 | 29777 | Photosystem I reaction center subunit N | AGI-02 | 22.436 | ||||||||||
Tf0147 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15764937 | 15766976 | ![]() | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | AGI-02 | 22.436 | |||||||||||
Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
Vt0032 | O | - | - | - | - | - | SI024 | ![]() ![]() | scaffold_7 | 17901487 | 17905433 | ![]() | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
Mf0090 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 19024295 | 19026021 | ![]() | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
Fb0365 | O | - | - | - | - | - | SI036,SI320 | ![]() ![]() | scaffold_7 | 20872462 | 20874659 | ![]() | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
Ov0015 | OOthers | O | - | - | - | - | - | SI304 | ![]() ![]() | scaffold_7 | 8255046 | 8256442 | ![]() | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
Fb0133 | - | - | - | - | - | - | ![]() | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
Af1043 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20049936 | 20052008 | ![]() | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
Tf0319 | - | - | - | - | - | - | SI152 | ![]() ![]() | scaffold_7 | 6872666 | 6877291 | ![]() | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
Fb0233 | O | - | - | - | - | - | SI025,SI079,SI169 | ![]() ![]() | scaffold_7 | 6535522 | 6540965 | ![]() | C_unshiu_00437 | 131524 | 136642 | WD-40 repeat-containing protein MSI4 | AGI-02 | 47.382 | ||||||||||
Gn0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6011523 | 6014015 | ![]() | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
Cp1736 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5640058 | 5643125 | ![]() | C_unshiu_00761 | 89991 | 92755 | Protein CbbY | AGI-02 | 50.716 | |||||||||||
Al0409 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI201,SI252 | ![]() ![]() | scaffold_7 | 5042508 | 5046271 | No | AGI-02 | 50.758 | KmG-02 | 44.930 | JtR-02 | 29.462 | NAT-02S | 90.742 | |||||||
Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4575503 | 4577125 | ![]() | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
Lp0126 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3946818 | 3949964 | ![]() | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
Tf0259 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3674156 | 3676384 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-02 | 67.666 | ||||||||||
Mf0094 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3721375 | 3722616 | ![]() | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
Gn0068 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3222483 | 3228894 | ![]() | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | AGI-02 | 68.446 | RP-02.2 | 9.814 | |||||||||
Af1379 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3456105 | 3460607 | ![]() | C_unshiu_00301 | 134429 | 138770 | CBS domain-containing protein CBSX1, chloroplastic | AGI-02 | 68.467 | |||||||||||
Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | ![]() ![]() | scaffold_7 | 2501520 | 2509737 | ![]() | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
Cp1716 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_7 | 2607670 | 2609433 | ![]() | C_unshiu_00025 | 553145 | 554831 | Thiol disulfide interchange protein | AGI-02 | 70.068 | ||||||||||
Cp1085 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ![]() | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
Vt0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2441452 | 2443391 | ![]() | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
Cp2263 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_7 | 2586384 | 2588513 | ![]() | C_unshiu_00025 | 530588 | 532071 | Hypothetical protein | AGI-02 | 70.082 | ||||||||||
Bf0128 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3323269 | 3331038 | ![]() | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
Fb0227 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2938059 | 2940407 | ![]() | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
Tf0020 | - | - | - | - | - | - | SI154 | ![]() ![]() | scaffold_7 | 2289455 | 2291216 | ![]() | C_unshiu_00025 | 258446 | 260200 | Homeobox leucine zipper protein | AGI-02 | 71.294 | ||||||||||
Tf0357 | - | - | - | - | - | - | SI018 | ![]() ![]() | scaffold_7 | 2246732 | 2249558 | ![]() | C_unshiu_01055 | 60614 | 63050 | Zinc finger protein JACKDAW | AGI-02 | 71.294 | ||||||||||
Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
Af1619 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1608634 | 1610659 | ![]() | C_unshiu_00209 | 147009 | 148975 | Thioredoxin h | AGI-02 | 73.759 | |||||||||||
If0010 | AAvailable marker | O | - | - | - | O | - | ![]() ![]() | scaffold_7 | 1264965 | 1266960 | ![]() | C_unshiu_00218 | 63403 | 65018 | 60S ribosomal protein L8 | AGI-02 | 73.759 | KmG-02 | 76.687 | JtR-02 | 10.849 | NAT-02S | 71.041 | ||||
If0210 | - | - | - | - | - | - | SI042 | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ![]() | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
Cp1697 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 966124 | 968846 | ![]() | C_unshiu_00041 | 555334 | 558046 | Urease accessory protein UreH | AGI-02 | 73.770 | ||||||||||
Af2893 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1739443 | 1743149 | ![]() | C_unshiu_01334 | 25863 | 29359 | Putative mitochondrial chaperone BCS1-B | AGI-02 | 73.779 | |||||||||||
Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
Fb0995 | OOthers | O | - | - | - | - | - | SI026 | ![]() ![]() | scaffold_7 | 1180019 | 1202408 | ![]() | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
Wy0041 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1295839 | 1297378 | ![]() | C_unshiu_00218 | 93074 | 94183 | GDP-mannose 4,6 dehydratase 2 | AGI-02 | 75.406 | |||||||||||
Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | ![]() ![]() | scaffold_7 | 815904 | 817239 | ![]() | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
Af1031 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 718488 | 722516 | ![]() | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
If0223 | AAvailable marker | - | - | - | - | O | O | No | AGI-02 | 76.168 | KmG-07 | 43.554 | JtR-02 | 13.208 | NAT-02S | 71.420 | ||||||||||||
Gn0101 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 662802 | 667420 | ![]() | C_unshiu_00353 | 203269 | 207136 | Protein MID1-COMPLEMENTING ACTIVITY 1 | AGI-02 | 77.881 | |||||||||||
Tf0026 | O | - | - | - | - | - | SI111,SI288 | ![]() ![]() | scaffold_7 | 285299 | 292550 | ![]() | C_unshiu_00312 | 151229 | 158232 | Ubiquilin | AGI-02 | 78.531 | ||||||||||
Tf0032 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 94155 | 97631 | ![]() | C_unshiu_00706 | 51525 | 54837 | AT-hook motif nuclear-localized protein 10 | AGI-02 | 78.531 | ||||||||||
Wy0062 | Wy0062.em | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15214969 | 15222324 | ![]() | C_unshiu_00034 | 634791 | 641934 | Peptidyl-prolyl cis-trans isomerase PASTICCINO1 | AGI-02 | 78.531 | ||||||||||
Al0627 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 128539 | 131642 | ![]() | C_unshiu_00706 | 16590 | 18098 | Trigalactosyldiacylglycerol 1 isoform 1 | AGI-02 | 78.531 | ||||||||||
Ov0306 | OOthers | - | - | - | - | - | - | SI382 | ![]() ![]() | scaffold_7 | 224443 | 227133 | No | AGI-02 | 79.663 | KmG-02 | 72.516 | JtR-02 | 8.671 | NAT-02S | 60.000 | |||||||
Tf0221 | - | - | - | - | - | - | SI057,SI225 | ![]() ![]() | scaffold_7 | 490750 | 492882 | ![]() | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
Fb1430 | Fb1430.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1879675 | 1880523 | ![]() | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
Tf0106 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1128046 | 1129318 | ![]() | C_unshiu_00007 | 49599 | 50702 | GATA transcription factor 15 | AGI-03 | 7.674 | |||||||||||
Bf0005 | - | - | - | - | - | - | SI194 | ![]() ![]() | scaffold_9 | 465444 | 468143 | ![]() | C_unshiu_00007 | 710354 | 712926 | Phosphatase 2C family protein | AGI-03 | 8.177 | ||||||||||
Cp0996 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI340 | ![]() ![]() | scaffold_9 | 543444 | 546746 | ![]() | C_unshiu_00007 | 630727 | 633783 | Neutral/alkaline invertase | AGI-03 | 9.366 | |||||||||
Tf0140 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 225971 | 232459 | ![]() | C_unshiu_00007 | 929895 | 935477 | Squamosa promoter-binding-like protein 1 | AGI-03 | 9.830 | |||||||||||
Gmom26 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 713868 | 716708 | ![]() | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
Tf0275 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_9 | 955176 | 957425 | ![]() | C_unshiu_00249 | 191274 | 194861 | Transposon protein, putative, Mutator sub-class | AGI-03 | 11.501 | ||||||||||
Cp1523 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 1356758 | 1359310 | ![]() | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
Mf0047 | DDominant marker | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1685407 | 1687081 | ![]() | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
Lp0208 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45704361 | 45713084 | ![]() | C_unshiu_00326 | 146528 | 154002 | ABC transporter C family member 3 | AGI-03 | 15.136 | NAT-03 | 28.397 | |||||||||
Af1415 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2603134 | 2605405 | ![]() | C_unshiu_00366 | 130993 | 132913 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-03 | 16.667 | |||||||||||
Al0419 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ![]() | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
Af1177 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2168387 | 2170546 | ![]() | C_unshiu_00085 | 78341 | 80308 | CASP-like protein 1E1 | AGI-03 | 18.579 | |||||||||||
Cp1031 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_9 | 2324313 | 2328666 | ![]() | C_unshiu_00394 | 11970 | 16480 | Putative E3 ubiquitin-protein ligase MARCH10 | AGI-03 | 18.610 | ||||||||||
Fb0827 | O | - | - | - | - | - | SI215,SI301 | ![]() ![]() | scaffold_9 | 2353442 | 2357780 | ![]() | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
Fb1227 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3367718 | 3376062 | ![]() | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
Cp1923 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2946301 | 2950297 | ![]() | C_unshiu_00097 | 195825 | 199499 | UPF0613 protein PB24D3.06c | AGI-03 | 22.454 | ||||||||||
Lp0202 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3131006 | 3134438 | ![]() | C_unshiu_00051 | 239802 | 243699 | NEDD8-activating enzyme E1 catalytic subunit | AGI-03 | 23.085 | |||||||||||
Cp1925 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 3115971 | 3120271 | ![]() | C_unshiu_00051 | 224928 | 229203 | YjeF family domain-containing protein | AGI-03 | 24.457 | ||||||||||
Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | ![]() ![]() | scaffold_9 | 2732900 | 2738896 | ![]() | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
Af1638 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28984972 | 28989373 | ![]() | C_unshiu_00045 | 556440 | 562091 | Tubulin | AGI-03 | 34.554 | |||||||||||
Tf0072 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28757274 | 28759075 | ![]() | C_unshiu_00045 | 372168 | 373811 | Heat stress transcription factor B-4 | AGI-03 | 35.962 | |||||||||||
Tf0074 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28444512 | 28446074 | ![]() | C_unshiu_00045 | 62608 | 63842 | TCP family transcription factor | AGI-03 | 37.816 | |||||||||||
Ov0512 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27198508 | 27199642 | ![]() | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
Bf0130 | - | - | - | - | - | - | SI063,SI188 | ![]() ![]() | scaffold_9 | 26981498 | 26984277 | ![]() | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
Cp0106 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 11867765 | 11869679 | ![]() | C_unshiu_00741 | 44989 | 55203 | Wall associated kinase-like 6, putative | AGI-03 | 40.566 | ||||||||||
Wy0020 | - | - | - | - | - | - | SI007 | ![]() ![]() | scaffold_9 | 5549195 | 5553148 | ![]() | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
Cp0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5605470 | 5610840 | ![]() | C_unshiu_00057 | 415460 | 428173 | Putative E3 ubiquitin-protein ligase HERC1 | AGI-03 | 44.848 | |||||||||||
Af3822 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5494254 | 5497030 | ![]() | C_unshiu_00164 | 74059 | 75936 | Phosphate transporter | AGI-03 | 44.864 | |||||||||||
Wy0032 | OOthers | O | - | - | - | O | O | ![]() ![]() | scaffold_9 | 10357084 | 10359834 | ![]() | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | ![]() ![]() | scaffold_9 | 7579900 | 7583093 | ![]() | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
Bf0229 | - | - | - | - | - | - | SI253 | ![]() ![]() | scaffold_9 | 17242218 | 17245901 | ![]() | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
Af1017 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22671554 | 22672639 | No | AGI-03 | 46.274 | |||||||||||||||
Tf0205 | OOthers | O | - | - | - | - | - | SI274 | ![]() ![]() | scaffold_9 | 16383851 | 16393557 | ![]() | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43447942 | 43449920 | ![]() | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
Gn0008 | OOthers | - | - | - | - | - | - | SI176 | ![]() ![]() | scaffold_9 | 17789634 | 17793258 | ![]() | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
Cp1500 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7080249 | 7086989 | ![]() | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | ![]() ![]() | scaffold_9 | 22728310 | 22730086 | ![]() | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
Tf0071 | - | - | - | - | - | - | SI084,SI146 | ![]() ![]() | scaffold_3 | 26610747 | 26612959 | ![]() | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
Tf0117 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 15107375 | 15113804 | ![]() | C_unshiu_00170 | 91205 | 97326 | Myb family transcription factor APL | AGI-03 | 46.274 | |||||||||||
Fb0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21153791 | 21158006 | ![]() | C_unshiu_00010 | 718703 | 722812 | F-box only protein 6 | AGI-03 | 46.274 | |||||||||||
Af1498 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 6766349 | 6768025 | ![]() | C_unshiu_00307 | 212314 | 218407 | Heterogeneous nuclear ribonucleoprotein 1 | AGI-03 | 46.274 | |||||||||||
Af1456 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 6354796 | 6356630 | ![]() | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | AGI-03 | 46.298 | |||||||||||
Cp1034 | AtAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 21107894 | 21109983 | ![]() | C_unshiu_00160 | 182942 | 184946 | Putative calcium-binding protein CML48 | AGI-03 | 46.760 | ||||||||||
Al0011 | Al0010.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10316999 | 10318328 | ![]() | C_unshiu_00806 | 21305 | 22892 | Polyubiquitin | AGI-03 | 46.768 | ||||||||||
Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
Cp0933 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49821906 | 49825730 | ![]() | C_unshiu_00014 | 159299 | 162719 | Hypothetical protein | AGI-03 | 47.283 | ||||||||||
Bf0221 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24195180 | 24198282 | ![]() | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
Bf0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25185200 | 25188839 | ![]() | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | ![]() ![]() | scaffold_9 | 25073693 | 25080376 | ![]() | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
Tf0423 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 50.361 | |||||||||||
Ov0013 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 18058387 | 18060752 | ![]() | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
Af1414 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 4888531 | 4892972 | ![]() | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | AGI-03 | 50.895 | |||||||||||
Cp0185 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34558362 | 34564638 | ![]() | C_unshiu_00190 | 230947 | 237587 | Adenine phosphoribosyltransferase | AGI-03 | 51.129 | |||||||||||
Ov0027 | Ov0027.em | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8417158 | 8419377 | ![]() | C_unshiu_00584 | 74089 | 76266 | 60S ribosomal protein L28 | AGI-03 | 51.749 | ||||||||||
Bf0171 | - | - | - | - | - | - | SI381 | ![]() ![]() | scaffold_9 | 4116356 | 4117315 | ![]() | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
Af1700 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 18502293 | 18505531 | ![]() | C_unshiu_00138 | 182719 | 186200 | Putative receptor protein kinase TMK1 | AGI-03 | 54.060 | |||||||||||
Bf1182.2 | - | - | - | - | - | - | No | AGI-03 | 56.391 | |||||||||||||||||||
Bf0004 | - | - | - | - | - | - | SI273 | ![]() ![]() | scaffold_9 | 29563003 | 29568705 | ![]() | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
Fb0329 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29237838 | 29242883 | ![]() | C_unshiu_00606 | 13693 | 18703 | Methyltransferase MT-A70 family protein isoform 1 | AGI-03 | 60.686 | |||||||||||
Al0001 | - | - | - | - | - | - | ![]() | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-03 | 62.228 | JtR-031 | 17.616 | |||||||||||||
Af1586 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23119502 | 23122347 | ![]() | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
Af1513 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29523786 | 29526379 | ![]() | C_unshiu_00056 | 181282 | 183151 | 40S ribosomal protein S10 | AGI-03 | 63.545 | |||||||||||
Tf0143 | - | - | - | - | - | - | SI127 | ![]() ![]() | scaffold_9 | 30040457 | 30044615 | ![]() | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | ![]() ![]() | scaffold_9 | 30513333 | 30517676 | ![]() | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
Fb0708 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243737 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
Af1589 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30995129 | 30999295 | ![]() | C_unshiu_00003 | 574672 | 576940 | Peroxisomal 2,4-dienoyl-CoA reductase | AGI-03 | 77.744 | |||||||||||
Tf0292 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31139789 | 31143240 | ![]() | C_unshiu_00003 | 698480 | 711976 | Protein strawberry notch | AGI-03 | 77.793 | ||||||||||
Bf0150 | - | - | - | - | - | - | SI316,SI370 | ![]() ![]() | scaffold_9 | 31018836 | 31027361 | ![]() | C_unshiu_00003 | 596288 | 610960 | Aldehyde dehydrogenase | AGI-03 | 77.920 | RP-03 | 77.748 | ||||||||
Tf0022 | MDisagree by Marco analysis | O | - | - | - | - | - | SI116 | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 78.631 | |||||||||
Cp0336 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31244440 | 31250356 | ![]() | C_unshiu_00003 | 809668 | 815079 | ABC transporter D family member 2, chloroplastic | AGI-03 | 79.515 | |||||||||||
Af1332 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20834427 | 20836151 | ![]() | C_unshiu_00052 | 455959 | 457684 | 60S acidic ribosomal protein | AGI-04 | ||||||||||||
Wy0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21145703 | 21148279 | ![]() | C_unshiu_00052 | 161014 | 162179 | Type II peroxiredoxin | AGI-04 | ||||||||||||
Gn0066.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19578179 | 19583475 | ![]() | C_unshiu_00043 | 90212 | 94791 | Carotenoid isomerase | AGI-04 | |||||||||||
Af1499 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21905557 | 21908832 | ![]() | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | AGI-04 | ||||||||||||
Af1508 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21983044 | 21991500 | ![]() | C_unshiu_00079 | 328854 | 336213 | Stomatal closure-related actin-binding protein 3 | AGI-04 | 1.342 | |||||||||||
Af1600 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22758027 | 22760875 | ![]() | C_unshiu_00038 | 305110 | 307864 | Negatively light-regulated protein | AGI-04 | 5.122 | |||||||||||
Af1639 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23462487 | 23466580 | ![]() | C_unshiu_00098 | 239683 | 243712 | Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 | AGI-04 | 6.635 | |||||||||||
Tf0286 | DDominant marker | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25001586 | 25004619 | ![]() | C_unshiu_01279 | 43222 | 46082 | Dof zinc finger protein DOF5.2 | AGI-04 | 32.710 | ||||||||||
Af1443 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25048398 | 25053494 | ![]() | C_unshiu_00009 | 15765 | 28846 | Pentatricopeptide repeat-containing family protein | AGI-04 | 33.808 | |||||||||||
Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | ![]() ![]() | scaffold_5 | 34294853 | 34297359 | ![]() | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
Tf0050 | - | - | - | - | - | - | SI104,SI346 | ![]() ![]() | scaffold_6 | 24874840 | 24876388 | ![]() | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
Tf0364 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 24606501 | 24612654 | ![]() | C_unshiu_00135 | 338118 | 344273 | FACT complex subunit SSRP1 | AGI-04 | 37.102 | ||||||||||
Af1462 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24274031 | 24276658 | ![]() | C_unshiu_00133 | 274230 | 284897 | Hypothetical protein | AGI-04 | 37.527 | |||||||||||
Al0313 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 23966039 | 23969583 | ![]() | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
Tf0254 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23916876 | 23939827 | ![]() | C_unshiu_00253 | 14647 | 20586 | Hypothetical protein | AGI-04 | 38.226 | ||||||||||
Vt0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24932481 | 24935909 | ![]() | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
Ov0513 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ![]() | C_unshiu_00009 | 325807 | 333424 | Hypothetical protein | AGI-04 | 38.903 | KmG-04 | 5.110 | RP-04 | 60.491 | ||||||
Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | ![]() ![]() | scaffold_6 | 24082263 | 24084635 | ![]() | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
Tf0397 | - | - | - | - | - | - | SI008 | ![]() ![]() | scaffold_6 | 23657256 | 23657810 | ![]() | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | ![]() ![]() | scaffold_6 | 23593516 | 23595492 | ![]() | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
Cp0085 | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23364303 | 23366061 | ![]() | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | AGI-04 | 42.183 | |||||||||||
Cp2026 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 23506491 | 23509585 | ![]() | C_unshiu_00098 | 286004 | 289150 | Tryptophan synthase, beta subunit | AGI-04 | 43.239 | ||||||||||
Af1059 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23066384 | 23072168 | ![]() | C_unshiu_00038 | 554982 | 560549 | Plastidic glucose transporter 4 | AGI-04 | 44.840 | |||||||||||
Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | ![]() ![]() | scaffold_6 | 22616979 | 22619271 | ![]() | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
Bf0008 | - | - | - | - | - | - | SI309 | ![]() ![]() | scaffold_6 | 22467565 | 22470029 | ![]() | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | ![]() ![]() | scaffold_6 | 22305922 | 22308021 | ![]() | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
Cp0415 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22213544 | 22219300 | ![]() | C_unshiu_00074 | 81301 | 86950 | ATA15 protein | AGI-04 | 50.134 | |||||||||||
Af1037 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1969590 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
Cp1361 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 21714716 | 21717652 | ![]() | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
Gmom19 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21450811 | 21454133 | ![]() | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ![]() | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
Gn0009 | AAvailable marker | - | - | - | - | O | O | AGI-04 | 57.369 | KmG-04 | 27.843 | |||||||||||||||||
Lp0206 | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20836509 | 20840107 | ![]() | C_unshiu_00052 | 452105 | 455631 | Monodehydroascorbate reductase | AGI-04 | 58.655 | |||||||||||
Cp0813 | - | - | - | - | - | - | SI047 | ![]() ![]() | scaffold_6 | 20638049 | 20641557 | ![]() | C_unshiu_00046 | 406041 | 409549 | Alpha/beta fold hydrolase | AGI-04 | 58.655 | ||||||||||
Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | ![]() ![]() | scaffold_6 | 21137783 | 21142157 | ![]() | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
Cp1798 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 20319677 | 20323198 | ![]() | C_unshiu_00215 | 205164 | 208490 | Orange 2 | AGI-04 | 60.291 | ||||||||||
Tf0373 | - | - | - | - | - | - | SI088 | ![]() ![]() | scaffold_6 | 21229813 | 21233537 | ![]() | C_unshiu_00037 | 387538 | 391239 | Uridylate kinase, putative | AGI-04 | 61.716 | ||||||||||
Bf0148 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20133118 | 20134805 | No | AGI-04 | 62.325 | NAT-04 | 12.575 | |||||||||||||
Ks9010 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_9 | 29460866 | 29463385 | ![]() | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
Wy0048 | Wy0048.k | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19900235 | 19904192 | ![]() | C_unshiu_00043 | 424252 | 427984 | Putative receptor protein kinase TMK1 | AGI-04 | 63.371 | NAT-04 | 21.157 | ||||||||
Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | ![]() | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
Tf0075 | - | - | - | - | - | - | SI059,SI248 | ![]() ![]() | scaffold_6 | 19142307 | 19156510 | ![]() | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | ![]() ![]() | scaffold_6 | 19105139 | 19113780 | ![]() | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
Cp0895 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 19241700 | 19246874 | ![]() | C_unshiu_00089 | 9945 | 14749 | ATP-dependent RNA helicase | AGI-04 | 67.375 | ||||||||||
If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | ![]() | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
Mf0072 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
Tf0224 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7785328 | 7796808 | ![]() | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
Cp1308 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_6 | 6329421 | 6335005 | ![]() | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
Cp0974 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 8029488 | 8035109 | ![]() | C_unshiu_00711 | 128510 | 138133 | Hypothetical protein | AGI-04 | 107.018 | |||||||||||
Mf0084 | OOthers | - | - | - | - | - | - | SI383 | ![]() ![]() | scaffold_6 | 40381 | 43868 | ![]() | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
Cp0278 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24750794 | 24752907 | ![]() | C_unshiu_00286 | 73068 | 81236 | Hypothetical protein | AGI-04 | 122.142 | |||||||||||
Tf0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1054257 | 1056078 | ![]() | C_unshiu_00609 | 77883 | 79313 | Putative WRKY transcription factor 41 | AGI-05 | ||||||||||||
Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | ![]() | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
Tf0342 | - | - | - | - | - | - | SI151 | ![]() ![]() | scaffold_3 | 1649410 | 1655963 | ![]() | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
Gmom03 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1864604 | 1871328 | ![]() | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
Tf0152 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ![]() | C_unshiu_01105 | 3681 | 8106 | AT-hook motif nuclear localized protein 1 | AGI-05 | 8.506 | ||||||||||
Cp1598 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 3802387 | 3805494 | ![]() | C_unshiu_00849 | 72935 | 75824 | 31 kDa ribonucleoprotein | AGI-05 | 12.715 | ||||||||||
Af1149 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 12985954 | 12989228 | ![]() | C_unshiu_02261 | 19156 | 21966 | Glycerol kinase | AGI-05 | 21.630 | |||||||||||
Af1253 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3201206 | 3204377 | ![]() | C_unshiu_00163 | 211551 | 214568 | Phosphate/phosphoenolpyruvate translocator | AGI-05 | 24.709 | |||||||||||
Cp2223 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3483334 | 3485637 | ![]() | C_unshiu_00933 | 86958 | 89273 | Protein LATERAL ORGAN BOUNDARIES | AGI-05 | 25.049 | ||||||||||
Bf0174 | O | - | - | - | - | - | SI282 | ![]() ![]() | scaffold_3 | 3551542 | 3555978 | ![]() | C_unshiu_00120 | 130029 | 134158 | Atp-dependent RNA helicase | AGI-05 | 25.049 | ||||||||||
Tf0051 | - | - | - | - | - | - | SI027,SI214 | ![]() ![]() | scaffold_3 | 3964036 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-05 | 25.590 | ||||||||||
Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
Tf0294 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 4794701 | 4799518 | ![]() | C_unshiu_00135 | 398519 | 403121 | Ureidoglycine aminohydrolase isoform 1 | AGI-05 | 27.135 | ||||||||||
Cp2229 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 4117485 | 4120274 | ![]() | C_unshiu_00318 | 44376 | 47085 | Nucleoside diphosphate kinase | AGI-05 | 27.135 | ||||||||||
Af1453 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4663211 | 4664667 | ![]() | C_unshiu_01589 | 29063 | 37936 | Hypothetical protein | AGI-05 | 27.956 | |||||||||||
Af1396 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4920662 | 4923421 | ![]() | C_unshiu_00520 | 166824 | 167867 | Ribosomal protein L19 family protein | AGI-05 | 28.041 | |||||||||||
Tf0017 | - | - | - | - | - | - | SI285 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | AGI-05 | 28.617 | ||||||||||
Wy0018 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 5318874 | 5321054 | ![]() | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
Gn0050 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5382490 | 5385009 | ![]() | C_unshiu_00014 | 637698 | 638678 | CRT binding factor 3 | AGI-05 | 29.035 | KmG-05S | 21.884 | JtR-05 | 19.008 | |||||||
Af1679 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4260126 | 4262819 | ![]() | C_unshiu_00186 | 288266 | 290432 | Adenylate kinase | AGI-05 | 29.035 | |||||||||||
Bf0158 | - | O | - | O | - | - | SI376 | ![]() ![]() | scaffold_3 | 5253281 | 5254755 | ![]() | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
Bf0165 | - | - | - | - | - | - | SI280 | ![]() ![]() | scaffold_3 | 4903592 | 4905871 | ![]() | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
Cp1533 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4831751 | 4834270 | ![]() | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
Al0624 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42647413 | 42652459 | ![]() | C_unshiu_01228 | 43617 | 48513 | Tetraspanin family protein | AGI-05 | 29.354 | |||||||||||
Af1452 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5518457 | 5529974 | ![]() | C_unshiu_00900 | 20186 | 30140 | Pheromone-processing carboxypeptidase kex1 | AGI-05 | 29.863 | |||||||||||
Cp0073 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5972288 | 5978062 | ![]() | C_unshiu_00997 | 69257 | 75059 | Transaldolase | AGI-05 | 34.924 | |||||||||||
Cp0076 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6329133 | 6332201 | ![]() | C_unshiu_01248 | 39031 | 42057 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-05 | 35.411 | |||||||||||
Tf0083 | - | - | - | - | - | - | SI129 | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ![]() | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
Tf0420 | AAvailable marker | O | O | O | - | O | O | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ![]() | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
Bf0024 | O | - | - | - | - | - | SI093 | ![]() ![]() | scaffold_5 | 38134662 | 38138860 | ![]() | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
Gn0056 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | ![]() | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | AGI-05 | 39.424 | |||||||||||
Cp1556 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 21432494 | 21440948 | ![]() | C_unshiu_00175 | 91338 | 99600 | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic | AGI-05 | 40.337 | ||||||||||
Tf0375 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 13034654 | 13036082 | ![]() | C_unshiu_00020 | 527751 | 528816 | Homeobox leucine zipper protein | AGI-05 | 40.558 | |||||||||||
Cp1483 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ![]() | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
Cp0160 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 21940551 | 21944032 | ![]() | C_unshiu_00272 | 187755 | 191248 | Endoglucanase | AGI-05 | 41.267 | |||||||||||
Tf0153 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 16957427 | 16959735 | ![]() | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | AGI-05 | 41.267 | ||||||||||
Cp1627 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 13309398 | 13310636 | ![]() | C_unshiu_00431 | 44507 | 45451 | Chloroplast small heat shock protein | AGI-05 | 41.272 | ||||||||||
Cp1628 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12822911 | 12825620 | ![]() | C_unshiu_02666 | 10104 | 12687 | Rhodanese/cell cycle control phosphatase superfamily protein | AGI-05 | 41.272 | |||||||||||
Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | ![]() ![]() | scaffold_3 | 13810497 | 13813004 | ![]() | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
Bf0184 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24893551 | 24898675 | ![]() | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
Af0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 25074163 | 25075916 | ![]() | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
Vt0011 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 12984411 | 12986574 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | ![]() | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
Af1047 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 16357227 | 16363309 | ![]() | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
Af1086 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 10510018 | 10517939 | ![]() | C_unshiu_00028 | 4115 | 12036 | AP-2 complex subunit mu | AGI-05 | 41.306 | |||||||||||
Af1087 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24796351 | 24800588 | ![]() | C_unshiu_00286 | 132648 | 135466 | Glycine hydroxymethyltransferase | AGI-05 | 41.306 | |||||||||||
Bf0104 | O | - | - | - | - | - | ![]() | C_unshiu_01101 | 77694 | 80951 | 12-oxophytodienoate reductase 2 | AGI-05 | 41.306 | NAT-05 | ||||||||||||||
Tf0122 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24620623 | 24627357 | ![]() | C_unshiu_02869 | 1885 | 10204 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | ![]() ![]() | scaffold_3 | 8528292 | 8529236 | ![]() | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
Tf0001.2 | AAvailable marker | O | O | O | - | O | O | ![]() ![]() | scaffold_3 | 8647529 | 8652282 | ![]() | C_unshiu_00580 | 75118 | 81473 | Transcription factor BIM1 | AGI-05 | 41.893 | ||||||||||
Cp0532 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 30393811 | 30398972 | ![]() | C_unshiu_00501 | 133280 | 137847 | Solanesyl diphosphate synthase | AGI-05 | 42.168 | |||||||||||
Tf0011.2 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 11078798 | 11089090 | ![]() | C_unshiu_02207 | 9802 | 19021 | Hypothetical protein | AGI-05 | 42.191 | ||||||||||
Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ![]() | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
Cp0540 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 10427313 | 10435293 | ![]() | C_unshiu_02340 | 2005 | 8306 | DNA repair protein reca, putative | AGI-05 | 42.191 | |||||||||||
Tf0053 | - | - | - | - | - | - | SI305 | ![]() ![]() | scaffold_3 | 29153425 | 29156189 | ![]() | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | ![]() ![]() | scaffold_3 | 6502231 | 6504139 | ![]() | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | ![]() | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | ![]() ![]() | scaffold_3 | 30648732 | 30651259 | ![]() | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
Af1036 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7016831 | 7019863 | ![]() | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
Tf0350 | OOthers | O | - | - | - | - | - | SI132 | ![]() ![]() | scaffold_3 | 8914744 | 8921411 | ![]() | C_unshiu_00695 | 71483 | 77987 | Acetyl-coenzyme A synthetase | AGI-05 | 43.295 | |||||||||
Gn0027 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | AGI-05 | 43.412 | |||||||||||||||||||
Lp0235 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9466071 | 9468445 | ![]() | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
Tf0268 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 10140904 | 10142752 | ![]() | C_unshiu_00149 | 326478 | 328059 | Transcription factor MYB21 | AGI-05 | 43.800 | ||||||||||
Bf0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9137249 | 9144663 | ![]() | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
Bf0177 | - | - | - | - | - | - | SI060 | ![]() ![]() | scaffold_3 | 8186689 | 8189902 | ![]() | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
Fb0369 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7792188 | 7795727 | ![]() | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
Mf0017 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | ![]() | C_unshiu_00199 | 77240 | 79028 | Expansin | AGI-05 | 44.674 | ||||||||||
Cp1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7327436 | 7329167 | ![]() | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | ![]() ![]() | scaffold_3 | 7047024 | 7049430 | ![]() | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
Fb1678 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6000266 | 6002833 | ![]() | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
Lp0143 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6076949 | 6080875 | ![]() | C_unshiu_00159 | 339926 | 343475 | Translation elongation factor G | AGI-05 | 45.297 | JtR-05 | 18.056 | ||||||||
Lp0207 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6140332 | 6142252 | ![]() | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
Tf0012 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 37601493 | 37607586 | ![]() | C_unshiu_00502 | 155419 | 162660 | Protein NLP8 | AGI-05 | 47.173 | ||||||||||
Af1576 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41566338 | 41572373 | No | AGI-05 | 47.986 | |||||||||||||||
Ov0005 | AAvailable marker | - | - | - | - | O | O | SI243,SI331 | ![]() ![]() | scaffold_3 | 41636616 | 41641083 | ![]() | C_unshiu_02126 | 9391 | 13319 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | AGI-05 | 47.986 | |||||||||
Lp0133 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ![]() | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
Cp0047 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40918148 | 40922656 | ![]() | C_unshiu_00735 | 120088 | 124350 | Hypothetical protein | AGI-05 | 48.590 | ||||||||||
Af1109 | - | - | - | - | - | - | ![]() | C_unshiu_00194 | 96415 | 98120 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | AGI-05 | 48.590 | |||||||||||||||
Tf0081 | - | - | - | - | - | - | SI038,SI324 | ![]() ![]() | scaffold_3 | 38214468 | 38216861 | ![]() | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | ![]() ![]() | scaffold_3 | 40963774 | 40965744 | ![]() | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
Tf0411 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 38111191 | 38116265 | ![]() | C_unshiu_00523 | 100297 | 104594 | Putative transcription factor PosF21 | AGI-05 | 48.613 | ||||||||||
Af1068 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40110008 | 40113420 | ![]() | C_unshiu_00335 | 99790 | 103133 | Protein vip1 | AGI-05 | 48.750 | |||||||||||
Al0605 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41434064 | 41437122 | ![]() | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
Al0003 | Al0003.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41697052 | 41697860 | ![]() | C_unshiu_01778 | 27362 | 28139 | Dehydrin COR15 | AGI-05 | 49.499 | ||||||||||
Fb2159 | - | - | - | - | - | - | SI205,SI300 | ![]() ![]() | scaffold_3 | 39606431 | 39608387 | ![]() | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
Cp0781 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 41043663 | 41046480 | ![]() | C_unshiu_00305 | 251599 | 254198 | Thioredoxin-like 7 family protein | AGI-05 | 50.294 | ||||||||||
Af1096 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42061488 | 42063267 | ![]() | C_unshiu_00778 | 89741 | 91509 | Cytochrome P450 82A4 | AGI-05 | 51.052 | |||||||||||
If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42229224 | 42231230 | ![]() | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
Cp1815 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8256398 | 8257886 | ![]() | C_unshiu_00154 | 274299 | 275412 | Wiskott-Aldrich syndrome protein family member 2 | AGI-05 | 51.501 | ||||||||||
Tf0256 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 43420187 | 43422432 | ![]() | C_unshiu_00411 | 116444 | 118424 | Myb-related protein Myb4 | AGI-05 | 52.314 | ||||||||||
Af1091 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43316046 | 43317909 | ![]() | C_unshiu_00411 | 11510 | 13352 | Arabinose 5-phosphate isomerase | AGI-05 | 52.655 | |||||||||||
Tf0351 | - | - | - | - | - | - | SI122 | ![]() ![]() | scaffold_3 | 43472094 | 43473220 | ![]() | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
Tf0036 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 43850269 | 43852816 | ![]() | C_unshiu_01051 | 94369 | 96339 | Auxin-responsive protein IAA14 | AGI-05 | 53.260 | ||||||||||
Cp0030 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43815647 | 43818118 | ![]() | C_unshiu_00869 | 176 | 1664 | Phospholipase A1-Igamma1, chloroplastic | AGI-05 | 53.642 | |||||||||||
Af0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44021779 | 44027536 | ![]() | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
Tf0280 | - | - | - | - | - | - | SI158,SI200 | ![]() ![]() | scaffold_7 | 3429964 | 3433239 | ![]() | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
Tf0068 | - | - | - | - | - | - | SI106 | ![]() ![]() | scaffold_3 | 44141305 | 44144453 | ![]() | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
Tf0300 | AAvailable marker | O | O | - | - | O | O | ![]() ![]() | scaffold_3 | 43862440 | 43863744 | ![]() | C_unshiu_01051 | 83417 | 84406 | Auxin-induced protein IAA4 | AGI-05 | 54.726 | ||||||||||
Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44202968 | 44205663 | ![]() | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42954362 | 42955051 | ![]() | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
Af1685 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40086985 | 40089114 | ![]() | C_unshiu_00335 | 76164 | 77436 | Hypothetical protein | AGI-05 | 56.481 | |||||||||||
Mf0041 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45076821 | 45080633 | ![]() | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
Al0308 | - | - | - | - | - | - | SI045 | ![]() ![]() | scaffold_8 | 24521116 | 24524868 | ![]() | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
Al0614 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44987719 | 44991534 | ![]() | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
Tf0184 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45393857 | 45398298 | ![]() | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
Tf0309 | - | - | - | - | - | - | SI190 | ![]() ![]() | scaffold_3 | 45314016 | 45316651 | ![]() | C_unshiu_00546 | 158416 | 160829 | TLP domain class transcription factor | AGI-05 | 57.948 | ||||||||||
Mf0055 | DDominant marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45551345 | 45552620 | ![]() | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
Cp1427 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45576863 | 45579197 | ![]() | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
Af1470 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46380264 | 46381057 | No | AGI-05 | 62.767 | |||||||||||||||
Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | ![]() ![]() | scaffold_3 | 46814909 | 46817474 | ![]() | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
Tf0370 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47121093 | 47124518 | ![]() | C_unshiu_00023 | 123134 | 131389 | Hypothetical protein | AGI-05 | 69.117 | |||||||||||
Gmom16 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
Gmom04 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
Bf0146 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48528820 | 48531316 | ![]() | C_unshiu_00026 | 280361 | 282836 | RRNA-processing protein FCF1 | AGI-05 | 78.274 | |||||||||||
Tf0279 | - | - | - | - | - | - | SI073 | ![]() ![]() | scaffold_3 | 49031441 | 49035202 | ![]() | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | AGI-05 | 80.539 | ||||||||||
Wy0005 | DDominant marker | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48337105 | 48339028 | No | AGI-05 | 83.570 | KmG-05S | 122.932 | ||||||||||||
Al0039 | - | - | - | - | - | - | ![]() | C_unshiu_00018 | 723553 | 725648 | Bifunctional protein FolD | AGI-05 | 95.305 | |||||||||||||||
Fb1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50637673 | 50640392 | No | AGI-05 | 103.212 | |||||||||||||||
Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | ![]() ![]() | scaffold_3 | 50861813 | 50866146 | ![]() | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32640743 | 32643349 | ![]() | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
Tf0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 36211961 | 36216858 | ![]() | C_unshiu_00077 | 335424 | 340163 | MYB-CC type transfactor | AGI-06 | 9.560 | |||||||||||
Gn0073 | AAvailable marker | O | O | - | - | O | O | ![]() ![]() | scaffold_2 | 35895662 | 35898841 | ![]() | C_unshiu_00077 | 30410 | 32987 | Tonoplast dicarboxylate transporter | AGI-06 | 12.402 | ||||||||||
Tf0330 | - | - | - | - | - | - | SI064,SI139 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
Vt0001 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35624935 | 35628855 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ![]() | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
Fb0104 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35758546 | 35760859 | ![]() | C_unshiu_00337 | 135198 | 136991 | Tropinone reductase like | AGI-06 | 16.857 | RP-06.2 | 16.271 | ||||||||
Cp0635 | AAvailable marker | O | - | O | - | O | O | ![]() | C_unshiu_00337 | 11596 | 15307 | 50S ribosomal protein L4 | AGI-06 | 17.029 | ||||||||||||||
Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | ![]() ![]() | scaffold_2 | 35354776 | 35363026 | ![]() | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
If0003 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI130 | ![]() ![]() | scaffold_2 | 35470078 | 35472862 | ![]() | C_unshiu_00048 | 64652 | 67377 | Aminomethyltransferase | AGI-06 | 18.136 | JtR-06S | 67.371 | |||||||
If0002 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35546692 | 35549207 | ![]() | C_unshiu_01497 | 10215 | 14601 | YggS family pyridoxal phosphate enzyme | AGI-06 | 19.002 | KmG-06 | 62.901 | ||||||||
Cp0384 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35422598 | 35425980 | ![]() | C_unshiu_00048 | 111764 | 114820 | APS reductase | AGI-06 | 19.002 | ||||||||||
Tf0119 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35564238 | 35570619 | ![]() | C_unshiu_01497 | 20297 | 33375 | Hypothetical protein | AGI-06 | 19.002 | ||||||||||
Gn0061.2 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25500601 | 25505812 | ![]() | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-06 | 20.248 | ||||||||||
Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | ![]() ![]() | scaffold_2 | 35212691 | 35214865 | ![]() | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
Af1580 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35013848 | 35015439 | ![]() | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
Tf0344 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 34624236 | 34631123 | ![]() | C_unshiu_00002 | 124392 | 131264 | Floral homeotic protein AGAMOUS | AGI-06 | 24.216 | ||||||||||
Cp0537 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 34189216 | 34193815 | ![]() | C_unshiu_00002 | 543564 | 547918 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 | AGI-06 | 25.930 | ||||||||||
Cp0190 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 18648426 | 18650443 | ![]() | C_unshiu_00618 | 20273 | 22297 | UPF0426 protein, chloroplastic | AGI-06 | 27.617 | ||||||||||
Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | ![]() ![]() | scaffold_2 | 33216839 | 33219042 | ![]() | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
Tf0004 | - | - | - | - | - | - | SI219,SI330 | ![]() ![]() | scaffold_2 | 33074821 | 33084014 | ![]() | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
Af1321 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16371168 | 16375666 | ![]() | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
Em0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31927342 | 31929229 | ![]() | C_unshiu_00027 | 345067 | 346727 | 50S ribosomal protein L14, chloroplastic | AGI-06 | 35.643 | |||||||||||
Af1693 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32069149 | 32072079 | ![]() | C_unshiu_00027 | 205885 | 208484 | DERLIN-2.2 isoform 1 | AGI-06 | 35.794 | |||||||||||
Wy0056 | Wy0056.em | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ![]() | C_unshiu_00027 | 521555 | 527308 | Auxin response factor | AGI-06 | 36.788 | |||||||||
Wy0035 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31148849 | 31150616 | ![]() | C_unshiu_00292 | 110620 | 112650 | FAD-binding Berberine family protein | AGI-06 | 36.863 | ||||||||||
Af1312 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29022433 | 29030537 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
Tf0432 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 31420457 | 31425299 | ![]() | C_unshiu_00091 | 370141 | 375026 | Nuclear transcription factor Y subunit A-7 | AGI-06 | 38.958 | ||||||||||
Mf0083 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 33837403 | 33842156 | No | AGI-06 | 39.963 | ||||||||||||||
Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | ![]() ![]() | scaffold_2 | 31036088 | 31038222 | ![]() | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
Tf0343 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 29204680 | 29206501 | ![]() | C_unshiu_00022 | 489282 | 490950 | High mobility group B protein 7 | AGI-06 | 44.393 | ||||||||||
Cp0214 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29732249 | 29735969 | ![]() | C_unshiu_00073 | 178507 | 182191 | MOSC domain-containing protein 2, mitochondrial | AGI-06 | 46.660 | ||||||||||
Af1042 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28786444 | 28788097 | No | AGI-06 | 55.700 | |||||||||||||||
Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ![]() | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
Cp0431 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 27084177 | 27089027 | ![]() | C_unshiu_00017 | 248152 | 252850 | E3 ubiquitin protein ligase RIE1 | AGI-06 | 60.660 | ||||||||||
Af1593 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27738397 | 27741912 | ![]() | C_unshiu_00745 | 82265 | 85742 | Prolactin regulatory element-binding protein, putative | AGI-06 | 61.501 | |||||||||||
Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ![]() | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
Af1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26595972 | 26598955 | ![]() | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
Al0224 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_2 | 26630154 | 26632900 | ![]() | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
Al0635 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 26435540 | 26438838 | ![]() | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
Cp0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24938686 | 24943643 | ![]() | C_unshiu_00472 | 85278 | 89618 | Putative ADP-glucose pyrophosphorylase small subunit | AGI-06 | 72.449 | |||||||||||
Cp0459 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27549660 | 27551146 | ![]() | C_unshiu_00017 | 707192 | 708314 | NADH dehydrogenase-like complex L | AGI-06 | 74.140 | |||||||||||
Cp1216 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 12112790 | 12113903 | ![]() | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
Af1111 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23021193 | 23023457 | ![]() | C_unshiu_00172 | 270783 | 273047 | Glucan endo-1,3-beta-glucosidase 13 | AGI-06 | 83.445 | |||||||||||
Ov0525 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 15833142 | 15836770 | ![]() | C_unshiu_01875 | 35983 | 39196 | ADP/ATP translocase 1 | AGI-06 | 91.522 | SA-06 | 27.092 | ||||||||
Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | ![]() ![]() | scaffold_2 | 14143537 | 14146003 | ![]() | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
Tf0264 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_2 | 248256 | 250675 | ![]() | C_unshiu_00109 | 175776 | 179005 | GAN | AGI-06 | 103.728 | ||||||||||
Tf0455 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9338651 | 9341271 | ![]() | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
Bf0212 | - | - | - | - | - | - | SI332 | ![]() ![]() | scaffold_2 | 9206686 | 9211152 | ![]() | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
Bf0116 | - | - | - | - | - | - | SI260 | ![]() ![]() | scaffold_2 | 7662753 | 7667440 | ![]() | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
Bf0161 | - | - | - | - | - | - | SI089,SI348 | ![]() ![]() | scaffold_2 | 6658003 | 6660691 | ![]() | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
Af1636 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 6611813 | 6619116 | ![]() | C_unshiu_00072 | 416072 | 423443 | Zinc transporter ZTP29 | AGI-06 | 150.228 | |||||||||||
Em0005 | Fb1892.em | - | - | - | - | - | - | ![]() | C_unshiu_00168 | 76386 | 80254 | BEL1-like homeodomain protein 9 | AGI-07 | |||||||||||||||
Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | ![]() ![]() | scaffold_4 | 115362 | 118025 | ![]() | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
Tf0410 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 213798 | 215848 | ![]() | C_unshiu_00168 | 273522 | 275858 | Pollen-specific protein SF3 | AGI-07 | 6.146 | ||||||||||
Af1623 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 612480 | 615318 | ![]() | C_unshiu_01079 | 3136 | 5814 | Thylakoid lumenal 15 kDa protein 1, chloroplastic | AGI-07 | 7.907 | |||||||||||
Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
Al0617 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 1021179 | 1023023 | ![]() | C_unshiu_00012 | 188654 | 191971 | Ubiquitin-binding WIYLD domain protein | AGI-07 | 8.553 | JtR-07 | 74.121 | ||||||||
Cp0039 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1549679 | 1551396 | ![]() | C_unshiu_00012 | 722822 | 724539 | LOB domain-containing protein 12 | AGI-07 | 11.882 | |||||||||||
Af1505 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1531262 | 1535758 | ![]() | C_unshiu_00012 | 704342 | 708725 | Multiple inositol polyphosphate phosphatase 1 | AGI-07 | 12.283 | |||||||||||
Vt0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2451345 | 2454325 | ![]() | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | ![]() ![]() | scaffold_4 | 2422861 | 2424838 | ![]() | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
Tf0335 | - | - | - | - | - | - | SI014,SI168 | ![]() ![]() | scaffold_4 | 2457798 | 2458868 | ![]() | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
Fb0322 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3249710 | 3254808 | ![]() | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
Lp0220 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39221210 | 39227401 | ![]() | C_unshiu_00495 | 125230 | 136174 | Hypothetical protein | AGI-07 | 14.968 | |||||||||||
Lp0112 | AAvailable marker | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3749809 | 3751724 | ![]() | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
Cp0975 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7924189 | 7928192 | ![]() | C_unshiu_00631 | 149702 | 153660 | Isopentenyl pyrophosphate isomerase | AGI-07 | 29.152 | ||||||||||
Cp0634 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15660463 | 15665838 | ![]() | C_unshiu_00824 | 96745 | 119992 | Hypothetical protein | AGI-07 | 32.589 | |||||||||||
Bf0031 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 4077557 | 4083819 | ![]() | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
Cp0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 10652381 | 10655082 | ![]() | C_unshiu_00483 | 100177 | 109515 | Protein LSD1 | AGI-07 | 35.506 | |||||||||||
Tf0087 | - | - | - | - | - | - | SI166,SI271,SI287 | ![]() ![]() | scaffold_4 | 11412331 | 11417624 | ![]() | C_unshiu_00019 | 190344 | 195992 | Two-component response regulator-like APRR2 | AGI-07 | 35.897 | ||||||||||
Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | ![]() ![]() | scaffold_2 | 3067337 | 3069249 | ![]() | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
Cp2118 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14565456 | 14568265 | ![]() | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 37.152 | |||||||||||
Tf0318 | AAvailable marker | O | O | O | - | O | O | ![]() ![]() | scaffold_4 | 13751433 | 13754767 | ![]() | C_unshiu_00240 | 282002 | 285335 | Transcription factor bHLH137 | AGI-07 | 37.467 | ||||||||||
Tf0267 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12571526 | 12575185 | ![]() | C_unshiu_00847 | 48651 | 52296 | Squamosa promoter-binding-like protein 13 | AGI-07 | 37.800 | ||||||||||
Cp0233 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 11210879 | 11216325 | ![]() | C_unshiu_00061 | 550725 | 556167 | Ribose-phosphate pyrophosphokinase 4 | AGI-07 | 37.826 | |||||||||||
Fb1134.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 9547707 | 9559498 | ![]() | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
Tf0076 | - | - | - | - | - | - | SI266 | ![]() ![]() | scaffold_4 | 7200135 | 7204232 | ![]() | C_unshiu_00013 | 459064 | 463137 | NAC domain-containing protein 78 | AGI-07 | 38.565 | ||||||||||
Al0206 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12309480 | 12311438 | ![]() | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
Tf0027 | - | - | - | - | - | - | SI046 | ![]() ![]() | scaffold_7 | 13911684 | 13912447 | ![]() | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
Af1629 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2969527 | 2973147 | ![]() | C_unshiu_00060 | 539807 | 543307 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | AGI-07 | 39.420 | |||||||||||
Cp1044 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4354278 | 4358516 | ![]() | C_unshiu_00062 | 326045 | 332995 | Iron-sulfur cluster formation ABC transporter ATP-binding subunit | AGI-07 | 39.420 | ||||||||||
Cp1279 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12900777 | 12903692 | ![]() | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
Bf0027 | - | - | - | - | - | - | SI372 | ![]() ![]() | scaffold_4 | 14565456 | 14567860 | ![]() | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 40.515 | ||||||||||
Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | ![]() | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
Edb003 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16046322 | 16048971 | ![]() | C_unshiu_01260 | 30136 | 32342 | Putative WRKY transcription factor 28 | AGI-07 | 41.830 | ||||||||||
Tf0065 | - | - | - | - | - | - | SI142 | ![]() ![]() | scaffold_4 | 13945795 | 13951313 | ![]() | C_unshiu_00357 | 35189 | 39739 | Auxin response factor | AGI-07 | 41.876 | ||||||||||
Tf0112 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17014582 | 17026325 | ![]() | C_unshiu_00225 | 37090 | 44898 | Regulation of nuclear pre-mRNA domain-containing protein 1B | AGI-07 | 43.014 | |||||||||||
Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | ![]() ![]() | scaffold_4 | 16232756 | 16233365 | ![]() | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | ![]() ![]() | scaffold_4 | 17057658 | 17074755 | ![]() | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
Mf0097 | AAvailable marker | O | O | - | O | O | O | SI235,SI365 | No | AGI-07 | 44.663 | KmG-07 | 50.959 | JtR-07 | 44.863 | NAT-07 | 3.290 | RP-07 | 46.168 | |||||||||
Fb0234 | - | - | - | - | - | - | SI250,SI265 | ![]() ![]() | scaffold_4 | 16176836 | 16178421 | ![]() | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
Cp0062 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16107199 | 16109587 | ![]() | C_unshiu_01642 | 16316 | 20085 | Ribose-phosphate diphosphokinase | AGI-07 | 45.716 | |||||||||||
Tf0320 | - | - | - | - | - | - | SI203 | ![]() ![]() | scaffold_4 | 16223771 | 16226683 | ![]() | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 45.716 | ||||||||||
If0207 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() | C_unshiu_01172 | 28413 | 28712 | Hypothetical protein | AGI-07 | 45.716 | ||||||||||||||
Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | ![]() ![]() | scaffold_4 | 17143350 | 17147918 | ![]() | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
Tf0213 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18839546 | 18848948 | ![]() | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
Vt0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18947498 | 18950949 | ![]() | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
Tf0310 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19681884 | 19685929 | ![]() | C_unshiu_00099 | 233334 | 237357 | NAC domain-containing protein 8 | AGI-07 | 54.869 | |||||||||||
Tf0337 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 19635415 | 19637061 | ![]() | C_unshiu_00099 | 186480 | 188051 | Ap2 erf and b3 domain-containing transcription factor rav2 | AGI-07 | 54.869 | ||||||||||
Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | ![]() ![]() | scaffold_4 | 19467669 | 19468803 | ![]() | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
Tf0165 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 19605473 | 19608059 | ![]() | C_unshiu_00099 | 154500 | 156794 | Two-component response regulator ARR18 | AGI-07 | 55.503 | ||||||||||
Tf0212 | - | - | - | - | - | - | SI196 | ![]() ![]() | scaffold_4 | 19816800 | 19825304 | ![]() | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
Cp0675 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 20294240 | 20301426 | ![]() | C_unshiu_00015 | 302440 | 309360 | DNA-directed RNA polymerase | AGI-07 | 59.793 | ||||||||||
Gn0046 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21522433 | 21525218 | ![]() | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | AGI-07 | 64.812 | JtR-08 | 23.181 | |||||||||
Tf0148 | AAvailable marker | O | - | - | - | O | O | SI119 | ![]() ![]() | scaffold_4 | 20998708 | 21001535 | ![]() | C_unshiu_00010 | 869802 | 872410 | Putative WRKY transcription factor 75 | AGI-07 | 64.812 | |||||||||
Af1633 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-07 | 67.201 | |||||||||||
Bf0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21861774 | 21865635 | ![]() | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
Lp0212 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22697056 | 22699336 | ![]() | C_unshiu_00004 | 381547 | 383756 | Polygalacturonase 1 beta-like protein 3 | AGI-07 | 69.544 | |||||||||||
Af1495 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22523092 | 22528307 | ![]() | C_unshiu_00004 | 548746 | 553542 | UDP-N-acetylglucosamine--N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine transferase isoform 3 | AGI-07 | 69.544 | |||||||||||
Af1447 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22802995 | 22807340 | ![]() | C_unshiu_00004 | 275820 | 279748 | Aldehyde dehydrogenase | AGI-07 | 70.744 | |||||||||||
Af1432 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23666784 | 23669594 | ![]() | C_unshiu_00001 | 659252 | 662036 | UDP-galactose/UDP-glucose transporter 5B | AGI-07 | 72.828 | |||||||||||
Cp0454 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23200936 | 23206254 | ![]() | C_unshiu_00001 | 214996 | 218740 | DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic | AGI-07 | 73.034 | |||||||||||
Af1509 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23564251 | 23568956 | ![]() | C_unshiu_00001 | 555659 | 560336 | Hypersensitive-induced response protein 1 | AGI-07 | 73.796 | |||||||||||
Ov0105.2 | Ov0106.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23552856 | 23556415 | ![]() | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | AGI-07 | 74.064 | KmG-07 | 15.390 | JtR-07 | 5.947 | ||||||
Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
Cp0093 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23596434 | 23599906 | ![]() | C_unshiu_00001 | 587949 | 598235 | Putative WRKY transcription factor 72 | AGI-07 | 74.537 | ||||||||||
Tf0045 | - | - | - | - | - | - | SI303,SI321 | ![]() ![]() | scaffold_4 | 23496020 | 23497466 | ![]() | C_unshiu_00001 | 490607 | 491890 | Homeobox transcription factor | AGI-07 | 74.573 | ||||||||||
Cp0452 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 23575399 | 23582495 | ![]() | C_unshiu_00001 | 566935 | 573821 | Alpha-amylase-like 3 isoform 1 | AGI-07 | 75.350 | ||||||||||
Al0408 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23737757 | 23740513 | ![]() | C_unshiu_00001 | 727392 | 729266 | F-box/kelch-repeat protein SKIP11 | AGI-07 | 75.917 | KmG-07 | 13.235 | JtR-07 | 1.788 | |||||||
Tf0424 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23908189 | 23912723 | ![]() | C_unshiu_00001 | 904872 | 908655 | Apyrase | AGI-07 | 77.041 | |||||||||||
Tf0094 | - | - | - | - | - | - | SI006 | ![]() ![]() | scaffold_4 | 23957038 | 23959134 | ![]() | C_unshiu_00001 | 950657 | 954895 | Myb family transcription factor APL | AGI-07 | 77.141 | ||||||||||
Cp0089 | Bno homozygous cultivar with minor allele | O | - | O | - | - | - | ![]() ![]() | scaffold_4 | 23858830 | 23861090 | ![]() | C_unshiu_00001 | 852968 | 856494 | CAAX amino terminal protease family protein | AGI-07 | 77.194 | ||||||||||
Af1690 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23923757 | 23925178 | ![]() | C_unshiu_00001 | 920379 | 924128 | Hypothetical protein | AGI-07 | 77.752 | |||||||||||
Gmom22 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
Cp0057 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24227703 | 24230754 | ![]() | C_unshiu_00001 | 1244353 | 1247404 | DUF1336 family protein | AGI-07 | 79.269 | |||||||||||
Af1405 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24503838 | 24505365 | ![]() | C_unshiu_00001 | 1513811 | 1515209 | FH interacting protein 1 | AGI-07 | 83.026 | |||||||||||
Af3017 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24401841 | 24406470 | ![]() | C_unshiu_00001 | 1415778 | 1420221 | Serine/threonine-protein kinase PBS1 | AGI-07 | 83.217 | |||||||||||
Bf1243 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24657015 | 24660141 | ![]() | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
Tf0043 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24820269 | 24824732 | ![]() | C_unshiu_00001 | 1871301 | 1874281 | Agamous-like MADS-box protein AGL15 | AGI-07 | 84.593 | |||||||||||
Af1187 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24996017 | 25000652 | ![]() | C_unshiu_00001 | 1991693 | 1996431 | Tocopherol O-methyltransferase | AGI-07 | 85.027 | |||||||||||
Gn0071 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI363 | ![]() ![]() | scaffold_4 | 25506446 | 25511133 | ![]() | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-07 | 86.113 | |||||||||
Wy0011 | OOthers | O | - | - | - | - | - | SI091 | ![]() ![]() | scaffold_4 | 24417602 | 24419019 | ![]() | C_unshiu_00001 | 1429943 | 1431279 | Enoyl CoA hydratase/isomerase | AGI-07 | 86.288 | |||||||||
Gn0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ![]() | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
Tf0014.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24976315 | 24979483 | ![]() | C_unshiu_00271 | 56325 | 61820 | Transcription factor | AGI-08 | ||||||||||||
Cp2188 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 24666729 | 24669708 | ![]() | C_unshiu_00021 | 778469 | 782836 | Phytol kinase | AGI-08 | 2.186 | ||||||||||
Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | ![]() ![]() | scaffold_8 | 24721937 | 24724569 | ![]() | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | ![]() ![]() | scaffold_8 | 24315720 | 24317671 | ![]() | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
Lp0031 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22261408 | 22266208 | ![]() | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
Fb2130 | - | - | - | - | - | - | SI069,SI117 | ![]() ![]() | scaffold_8 | 24341129 | 24344795 | ![]() | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
Cp0719 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23257043 | 23262019 | ![]() | C_unshiu_02393 | 18637 | 23537 | Inner membrane protein ALBINO3 | AGI-08 | 12.793 | |||||||||||
Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | ![]() ![]() | scaffold_8 | 23456630 | 23459052 | ![]() | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
Cp2190 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24416582 | 24418982 | ![]() | C_unshiu_00021 | 526890 | 529253 | Kinase PfkB | AGI-08 | 13.780 | ||||||||||
Af1208 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23036291 | 23037524 | ![]() | C_unshiu_02220 | 11982 | 13216 | Tonoplast intrinsic protein | AGI-08 | 17.057 | |||||||||||
Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | ![]() ![]() | scaffold_8 | 22730839 | 22737522 | ![]() | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
Al0416 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22316999 | 22319482 | ![]() | C_unshiu_00639 | 90698 | 99467 | Elongation factor 1-alpha | AGI-08 | 23.023 | JtR-07 | 60.405 | NAT-082 | 21.126 | ||||||
Tf0412 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22191056 | 22193554 | ![]() | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||||
Tf0150 | AAvailable marker | O | O | - | O | O | O | SI262 | ![]() ![]() | scaffold_8 | 22191056 | 22193554 | ![]() | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||
Tf0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21887372 | 21893128 | ![]() | C_unshiu_00500 | 147319 | 151840 | Auxin response factor | AGI-08 | 27.318 | |||||||||||
Tf0241 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22106872 | 22114471 | ![]() | C_unshiu_00481 | 121975 | 128680 | Zinc finger CCCH domain-containing protein 24 | AGI-08 | 27.618 | ||||||||||
Bf0412 | - | - | - | - | - | - | No | AGI-08 | 29.534 | |||||||||||||||||||
Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | ![]() ![]() | scaffold_8 | 21953129 | 21960709 | ![]() | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
Ov0520 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 4712393 | 4713689 | ![]() | C_unshiu_00438 | 34343 | 35619 | BURP domain-containing protein | AGI-08 | 33.144 | JtR-08 | 26.748 | ||||||||
Tf0096 | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21369373 | 21370728 | ![]() | C_unshiu_00784 | 297 | 1652 | Transcription factor RAX3 | AGI-08 | 34.042 | |||||||||||
Tf0227 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 21666061 | 21671693 | ![]() | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
Gn0031 | AtAvailable marker | - | - | - | - | O | O | AGI-08 | 37.706 | |||||||||||||||||||
Gn0030 | MDisagree by Marco analysis | - | - | - | - | - | - | AGI-08 | 37.823 | KmG-08 | 37.758 | NAT-082 | 30.069 | |||||||||||||||
Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
Af1515 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20838053 | 20844872 | ![]() | C_unshiu_00883 | 60978 | 104832 | Argonaute 1 | AGI-08 | 40.438 | |||||||||||
Sd0004 | - | - | - | - | - | - | ![]() | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 40.459 | |||||||||||||||
Al0411 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_8 | 19760077 | 19761961 | ![]() | C_unshiu_00011 | 188649 | 189649 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-08 | 40.857 | ||||||||||
Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20424287 | 20425903 | ![]() | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
Ov0125 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 20352232 | 20354410 | ![]() | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | AGI-08 | 41.398 | ||||||||||
Cp0703 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19546541 | 19549348 | ![]() | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | AGI-08 | 43.089 | |||||||||||
Cp1084 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
Gn0100 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19259623 | 19261508 | ![]() | C_unshiu_00814 | 13987 | 15768 | Putative lycopene beta cyclase | AGI-08 | 44.669 | |||||||||||
Wy0039 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 18824262 | 18825514 | ![]() | C_unshiu_00459 | 34475 | 34918 | Hypothetical protein | AGI-08 | 45.276 | JtR-08 | 16.276 | ||||||||
Bf0415 | - | - | - | - | - | - | ![]() | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
Af1487 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 18155481 | 18157658 | ![]() | C_unshiu_00251 | 205180 | 207288 | DnaJ | AGI-08 | 47.330 | |||||||||||
Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | ![]() ![]() | scaffold_3 | 34696661 | 34702240 | ![]() | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
Al0240 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 8033465 | 8038415 | ![]() | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
Tf0336 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 10574673 | 10578797 | ![]() | C_unshiu_02599 | 10362 | 14310 | NAD(P)-linked oxidoreductase superfamily protein | AGI-08 | 54.304 | |||||||||||
Cp0077 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9849133 | 9852098 | ![]() | C_unshiu_00049 | 210181 | 212829 | Altered inheritance of mitochondria protein 32 | AGI-08 | 54.867 | |||||||||||
Gn0037 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21042049 | 21048279 | ![]() | C_unshiu_00010 | 823068 | 829158 | Agamous-like MADS-box protein AGL9 homolog | AGI-08 | 55.656 | |||||||||||
Cp2237 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 13190041 | 13194829 | ![]() | C_unshiu_01736 | 18986 | 23543 | Riboflavin biosynthesis protein ribBA, chloroplastic | AGI-08 | 55.965 | ||||||||||
Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | ![]() ![]() | scaffold_8 | 13408610 | 13413938 | ![]() | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
Fb0321 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6834487 | 6837762 | ![]() | C_unshiu_00918 | 5010 | 7626 | Arginine decarboxylase 1 | AGI-08 | 56.405 | JtR-08 | 25.280 | ||||||||
Tf0144 | - | - | - | - | - | - | SI125,SI189,SI192 | ![]() ![]() | scaffold_8 | 8009000 | 8012045 | ![]() | C_unshiu_00682 | 86334 | 89311 | Transcription factor bHLH121 | AGI-08 | 56.439 | ||||||||||
Af1110 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 9656865 | 9660001 | ![]() | C_unshiu_01425 | 333 | 5522 | N-carbamoylputrescine amidase | AGI-08 | 56.690 | |||||||||||
Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | ![]() ![]() | scaffold_8 | 8176371 | 8177435 | ![]() | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
Vt0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 8153660 | 8174407 | ![]() | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Tf0210 | - | - | - | - | - | - | SI183 | ![]() ![]() | scaffold_9 | 11993282 | 11999324 | ![]() | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
Gmom13 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 13223034 | 13225922 | ![]() | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
Af1575 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17524835 | 17526697 | ![]() | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
Af1052 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 12808154 | 12820311 | ![]() | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Wy0015 | O | - | - | - | - | - | SI041 | ![]() ![]() | scaffold_8 | 13101257 | 13103161 | ![]() | C_unshiu_02878 | 9199 | 10715 | UDP-glycosyltransferase 73C5 | AGI-08 | 56.724 | ||||||||||
Wy0045 | Wy0045.k | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 9564698 | 9566326 | ![]() | C_unshiu_02764 | 1529 | 2654 | Geraniol 10-hydroxylase-like protein | AGI-08 | 56.724 | ||||||||||
Al0632 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ![]() | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | AGI-08 | 56.724 | JtR-08 | 18.952 | ||||||||
Al0643 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 11126658 | 11131076 | ![]() | C_unshiu_02977 | 1950 | 2673 | Dolichyldiphosphatase 1 | AGI-08 | 56.724 | |||||||||||
Cp0632 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_1 | 27698934 | 27703620 | ![]() | C_unshiu_00237 | 40930 | 45531 | Protein translocase subunit SecY | AGI-08 | 56.724 | ||||||||||
Em0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19840881 | 19844299 | ![]() | C_unshiu_00043 | 360776 | 363775 | BEL1-like homeodomain protein 1 | AGI-08 | 56.724 | |||||||||||
Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | ![]() ![]() | scaffold_9 | 13440332 | 13442904 | ![]() | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
Fb0389 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 25179668 | 25188103 | ![]() | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
Mf0058 | T3 or more alleleic model | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46818817 | 46822856 | ![]() | C_unshiu_00053 | 481338 | 485184 | Nitrogen regulatory protein P-II | AGI-08 | 57.196 | JtR-05 | 39.516 | ||||||||
Bf0409 | - | - | - | - | - | - | ![]() | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
Tf0325 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6700441 | 6703748 | ![]() | C_unshiu_02974 | 10142 | 13418 | B-box type zinc finger family protein | AGI-08 | 57.386 | ||||||||||
Af1398 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 7899376 | 7902959 | ![]() | C_unshiu_00887 | 49120 | 57547 | Hypothetical protein | AGI-08 | 57.551 | |||||||||||
Tf0290 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_8 | 18064761 | 18071003 | ![]() | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | AGI-08 | 57.802 | ||||||||||
Bf0115 | O | - | - | - | - | - | SI054,SI295 | ![]() ![]() | scaffold_8 | 6317205 | 6322458 | ![]() | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
Gn0058 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 11297754 | 11299510 | ![]() | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-08 | 59.107 | |||||||||||
Af1486 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17510926 | 17513265 | ![]() | C_unshiu_00962 | 434 | 2684 | Prefoldin subunit 4 | AGI-08 | 59.562 | |||||||||||
Gn0063 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40937725 | 40942854 | ![]() | C_unshiu_00735 | 99621 | 103733 | Violaxanthin de-epoxidase | AGI-08 | 60.140 | KmG-07 | 31.750 | ||||||||
Tf0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6025802 | 6031497 | ![]() | C_unshiu_00220 | 48148 | 53214 | BEL1-like homeodomain protein 6 | AGI-08 | 61.643 | |||||||||||
Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23654785 | 23658857 | ![]() | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
Af1416 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 3738607 | 3741747 | ![]() | C_unshiu_00589 | 131180 | 134227 | Embryo defective 1273, putative isoform 1 | AGI-08 | 68.834 | |||||||||||
Lg2002 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2646458 | 2649562 | ![]() | C_unshiu_00152 | 294607 | 297615 | Phosphoglycerate dehydrogenase | AGI-08 | 69.974 | |||||||||||
Wy0004 | - | - | - | - | - | - | ![]() | C_unshiu_02819 | 2728 | 4118 | CXE carboxylesterase | AGI-08 | 70.463 | NAT-082 | 65.434 | |||||||||||||
Cp1144 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2649991 | 2655756 | ![]() | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
Tf0250 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_8 | 2697793 | 2701440 | ![]() | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | AGI-08 | 73.105 | ||||||||||
Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2561845 | 2563605 | ![]() | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
Lp0226 | O | - | - | - | - | - | SI210 | ![]() ![]() | scaffold_8 | 2831832 | 2837109 | ![]() | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | ![]() ![]() | scaffold_8 | 2673135 | 2674232 | ![]() | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
Fb0293 | - | - | - | - | - | - | SI198,SI374 | ![]() | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
Al0517 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 2572439 | 2574295 | ![]() | C_unshiu_00363 | 5892 | 7583 | Limonoid glucosyltransferase | AGI-08 | 74.016 | JtR-08 | 15.435 | ||||||||
Cp0603 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2349655 | 2354496 | ![]() | C_unshiu_00363 | 217631 | 222409 | Hop-interacting protein THI043 | AGI-08 | 75.684 | ||||||||||
Lg2004 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2599717 | 2602090 | ![]() | C_unshiu_00152 | 347645 | 349890 | Cinnamyl alcohol dehydrogenase | AGI-08 | 76.045 | |||||||||||
Al0247 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2227827 | 2230752 | ![]() | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
Gn0049 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 1604460 | 1606311 | ![]() | C_unshiu_00024 | 699386 | 701126 | DUF1005 family protein | AGI-08 | 77.688 | JtR-08 | 17.757 | |||||||||
Edw002 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2012329 | 2014782 | ![]() | C_unshiu_00024 | 335678 | 337129 | LIM transcription factor | AGI-08 | 77.720 | |||||||||||
Cp0297 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2135445 | 2138606 | ![]() | C_unshiu_00024 | 197656 | 201866 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-08 | 78.209 | |||||||||||
Fb0246 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2403492 | 2406922 | ![]() | C_unshiu_00363 | 170901 | 174318 | Hypothetical protein | AGI-08 | 80.078 | |||||||||||
Af1362 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2888992 | 2895645 | ![]() | C_unshiu_00152 | 72564 | 86513 | Hypothetical protein | AGI-08 | 80.366 | |||||||||||
Al0402 | AAvailable marker | O | - | - | - | O | O | ![]() | C_unshiu_00008 | 564906 | 567158 | Peptide upstream ORF protein, putative | AGI-08 | 81.190 | KmG-04 | 44.163 | NAT-04 | 28.388 | ||||||||||
Tf0356 | - | - | - | - | - | - | SI134,SI160 | ![]() ![]() | scaffold_8 | 998289 | 1001763 | ![]() | C_unshiu_00041 | 588335 | 591780 | Basic-leucine zipper (BZIP) transcription factor family | AGI-08 | 83.743 | ||||||||||
Gn0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 5053540 | 5061039 | ![]() | C_unshiu_00616 | 99349 | 106841 | V-type H+-transporting ATPase subunit A | AGI-08 | 84.345 | KmG-02 | 16.986 | |||||||||
Cp0059 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23075728 | 23081009 | ![]() | C_unshiu_00001 | 89828 | 96147 | Protein NLRC3 | AGI-08 | 86.856 | |||||||||||
Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 67997 | 74191 | ![]() | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | ![]() ![]() | scaffold_6 | 16909492 | 16912088 | ![]() | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
Wy0059 | Wy0059.em | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 8562431 | 8564865 | ![]() | C_unshiu_00232 | 292640 | 294683 | DUF538 family protein | AGI-08 | 91.502 | ||||||||||
Tf0311 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 15932016 | 15936176 | ![]() | C_unshiu_00779 | 78105 | 81377 | Auxin transporter-like protein 2 | AGI-08 | 91.890 | ||||||||||
Bf0123 | - | - | - | - | - | - | SI141 | ![]() ![]() | scaffold_6 | 15803864 | 15809998 | ![]() | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
Af1062 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14892939 | 14897320 | ![]() | C_unshiu_00102 | 331172 | 333886 | PRA1 family protein A1 | AGI-08 | 93.624 | |||||||||||
Af1345 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 13082313 | 13084012 | ![]() | C_unshiu_01022 | 8566 | 10161 | Histone H2A | AGI-08 | 93.624 | |||||||||||
Al0601 | - | - | - | - | - | - | ![]() | C_unshiu_00065 | 39268 | 43421 | Probable GTP diphosphokinase RSH2, chloroplastic | AGI-08 | 93.624 | |||||||||||||||
Tf0062 | Bno homozygous cultivar with minor allele | O | - | - | O | - | - | SI223 | ![]() ![]() | scaffold_6 | 11826472 | 11830875 | ![]() | C_unshiu_00207 | 252955 | 255240 | Transcription factor ASG4 | AGI-08 | 93.624 | |||||||||
Mf0076 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 11704199 | 11706676 | ![]() | C_unshiu_00207 | 132539 | 134984 | Cytosolic ascorbate peroxidase | AGI-08 | 93.624 | ||||||||||
Tf0315 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 14087181 | 14090115 | ![]() | C_unshiu_00287 | 221944 | 222997 | Phantastica | AGI-08 | 93.657 | ||||||||||
Al0422 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14495473 | 14496662 | ![]() | C_unshiu_00032 | 369423 | 370581 | Subtilisin inhibitor 1, putative | AGI-08 | 93.695 | ||||||||||
Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7983788 | 7991526 | ![]() | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
Gn0054 | - | - | - | - | - | - | AGI-08 | 95.075 | KmG-04 | 64.581 | ||||||||||||||||||
Tf0271 | Bno homozygous cultivar with minor allele | O | O | - | O | - | - | ![]() ![]() | scaffold_6 | 11707953 | 11715646 | ![]() | C_unshiu_01619 | 42347 | 50640 | CCR4-NOT transcription complex subunit 4 | AGI-08 | 95.613 | ||||||||||
Cp0052 | OOthers | O | - | - | - | - | - | ![]() | C_unshiu_01597 | 29471 | 42354 | Glucose-6-phosphate dehydrogenase 4 | AGI-08 | 96.035 | ||||||||||||||
Tf0348 | - | - | - | - | - | - | SI118 | ![]() ![]() | scaffold_6 | 11611994 | 11614367 | ![]() | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
Tf0085 | - | - | - | - | - | - | SI094,SI211 | ![]() ![]() | scaffold_6 | 2067586 | 2073007 | ![]() | C_unshiu_00176 | 89975 | 97731 | Transcription factor-like protein DPB | AGI-08 | 96.807 | ||||||||||
Bf1185 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40993520 | 40993992 | No | AGI-09 | ||||||||||||||||
Fb0326 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 43051579 | 43053394 | ![]() | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
Tf0054 | O | - | - | - | - | - | SI238 | ![]() ![]() | scaffold_5 | 43108998 | 43114214 | ![]() | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | ![]() ![]() | scaffold_5 | 43060442 | 43066562 | ![]() | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
Af1060 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42918371 | 42923480 | ![]() | C_unshiu_00370 | 75283 | 79772 | Tonoplast monosaccharide transporter 2 | AGI-09 | 23.647 | |||||||||||
Lg2005 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42187714 | 42189727 | ![]() | C_unshiu_00192 | 319592 | 321612 | SCF ubiquitin ligase, SKP1 component | AGI-09 | 34.172 | |||||||||||
Tf0019 | - | - | - | - | - | - | SI056,SI347 | ![]() ![]() | scaffold_5 | 41881297 | 41883386 | ![]() | C_unshiu_00009 | 1049324 | 1051358 | C2H2-like zinc finger protein | AGI-09 | 34.799 | ||||||||||
Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | ![]() | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
Tf0088 | MDisagree by Marco analysis | O | - | - | - | - | - | SI066 | ![]() ![]() | scaffold_5 | 41275201 | 41278829 | ![]() | C_unshiu_00127 | 251592 | 254627 | Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | AGI-09 | 35.763 | |||||||||
Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | ![]() ![]() | scaffold_5 | 41184180 | 41190033 | ![]() | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
Al0618 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 40872793 | 40877775 | ![]() | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
Cp0506 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 40832603 | 40834625 | No | AGI-09 | 38.656 | ||||||||||||||
Fb0357 | O | - | - | - | - | - | SI384 | ![]() ![]() | scaffold_5 | 40550222 | 40554434 | ![]() | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | ![]() ![]() | scaffold_5 | 40628244 | 40630241 | ![]() | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
Fb2156 | Fb2156.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ![]() | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
Cp0249 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39480647 | 39484776 | ![]() | C_unshiu_00457 | 96540 | 99356 | Acetyltransferase component of pyruvate dehydrogenase complex | AGI-09 | 41.336 | |||||||||||
Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39858531 | 39862402 | ![]() | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
Tf0016 | - | - | - | - | - | - | SI345 | ![]() ![]() | scaffold_5 | 39839984 | 39841860 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-09 | 42.158 | ||||||||||
Gn0021 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 39630111 | 39635609 | ![]() | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
Tf0069 | - | - | - | - | - | - | SI199 | ![]() ![]() | scaffold_5 | 38566192 | 38571337 | ![]() | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
Tf0360 | - | - | - | - | - | - | SI112 | ![]() ![]() | scaffold_5 | 38669123 | 38672110 | ![]() | C_unshiu_00430 | 98615 | 101120 | Trihelix transcription factor GT-2 | AGI-09 | 43.140 | ||||||||||
Fb0138 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38499024 | 38504883 | ![]() | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
Tf0003.2 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37808878 | 37811097 | ![]() | C_unshiu_00238 | 116142 | 129209 | Hypothetical protein | AGI-09 | 44.054 | ||||||||||
Tf0084 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38288047 | 38296128 | ![]() | C_unshiu_00183 | 305878 | 313881 | Transcription elongation factor SPT5 | AGI-09 | 44.096 | |||||||||||
Tf0070 | OOthers | O | - | - | - | - | - | SI277 | ![]() ![]() | scaffold_5 | 39748754 | 39753073 | ![]() | C_unshiu_01089 | 22643 | 26826 | Basic helix-loop-helix family protein | AGI-09 | 45.029 | |||||||||
Tf0332 | - | - | - | - | - | - | SI081 | ![]() ![]() | scaffold_5 | 37586834 | 37589255 | ![]() | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
Ov0407 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37043417 | 37051080 | ![]() | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
Wy0003 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37189653 | 37192231 | ![]() | C_unshiu_00144 | 215223 | 217733 | Aminotransferase | AGI-09 | 46.823 | KmG-09 | 52.581 | NAT-09 | 69.467 | ||||||
If0211 | AAvailable marker | - | - | - | - | O | O | SI226 | No | AGI-09 | 47.410 | KmG-09 | 60.856 | |||||||||||||||
Cp0257 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36526073 | 36528589 | ![]() | C_unshiu_00657 | 52199 | 54744 | Trehalose-phosphatase | AGI-09 | 48.390 | |||||||||||
Af1482 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36550507 | 36552800 | ![]() | C_unshiu_00657 | 28541 | 30831 | DRE binding transcription factor | AGI-09 | 49.255 | |||||||||||
Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36398988 | 36399239 | ![]() | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
Fb0153 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36347986 | 36350649 | ![]() | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
Bf0218 | O | - | - | - | - | - | SI232 | ![]() ![]() | scaffold_5 | 36036990 | 36048487 | ![]() | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
Wy0030 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 36229310 | 36230518 | ![]() | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
Cp1162 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 35908181 | 35912917 | ![]() | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
Cp1477 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36095844 | 36099890 | ![]() | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
Af2596 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38154975 | 38155769 | ![]() | C_unshiu_00319 | 189073 | 189599 | Basic blue protein | AGI-09 | 57.830 | |||||||||||
Fb0372 | - | - | - | - | - | - | SI343,SI052 | ![]() ![]() | scaffold_5 | 35123213 | 35124730 | ![]() | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
Tf0151 | AAvailable marker | O | - | - | - | O | O | SI159,SI281 | ![]() ![]() | scaffold_5 | 35357333 | 35359897 | No | AGI-09 | 60.528 | RP-09 | 41.892 | |||||||||||
Tf0061 | - | - | - | - | - | - | SI150,SI186 | ![]() ![]() | scaffold_5 | 35159690 | 35164384 | ![]() | C_unshiu_00764 | 30899 | 36628 | Auxin-responsive protein IAA8 | AGI-09 | 61.651 | ||||||||||
Af1205 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34161721 | 34162652 | ![]() | C_unshiu_00196 | 15219 | 16117 | Basic helix-loop-helix DNA-binding superfamily protein, putative | AGI-09 | 64.754 | |||||||||||
Af1377 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32780339 | 32783349 | ![]() | C_unshiu_00224 | 297837 | 300694 | Seryl-tRNA synthetase (Serin-tRNA ligase) | AGI-09 | 70.624 | |||||||||||
Bf0195 | - | - | - | - | - | - | SI369 | ![]() ![]() | scaffold_5 | 31069237 | 31075092 | ![]() | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
If0216 | OOthers | O | - | - | - | - | - | SI174 | ![]() ![]() | scaffold_2 | 12876952 | 12881843 | ![]() | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
Gn0065 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() | C_unshiu_00021 | 34178 | 38574 | Phytoene desaturase | AGI-09 | 79.316 | ||||||||||||||
Al0207 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4366802 | 4370111 | ![]() | C_unshiu_00186 | 178635 | 181547 | SNF1-related protein kinase regulatory subunit gamma-1 | AGI-09 | 84.537 | JtR-09S | 9.929 | ||||||||
Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | ![]() | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
Fb0373 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6404463 | 6435349 | ![]() | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
Af1116 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6749024 | 6753178 | ![]() | C_unshiu_00100 | 361556 | 365479 | Magnesium transporter MRS2-like protein | AGI-09 | 85.810 | |||||||||||
Fb0110 | O | - | - | - | - | - | SI246 | ![]() ![]() | scaffold_5 | 8512380 | 8517835 | ![]() | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
Ov0111 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 8532280 | 8539677 | ![]() | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
Cp0747 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11084960 | 11088767 | ![]() | C_unshiu_00184 | 282295 | 285277 | ATP synthase protein I | AGI-09 | 85.816 | |||||||||||
Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | ![]() ![]() | scaffold_5 | 29400846 | 29403554 | ![]() | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
Tf0093.2 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_5 | 29413143 | 29414562 | ![]() | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | AGI-09 | 86.512 | ||||||||||
Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29463604 | 29466318 | ![]() | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
Bf0413 | - | - | - | - | - | - | ![]() | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
Cp0065 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 8435123 | 8435971 | ![]() | C_unshiu_01044 | 7117 | 7963 | Ferredoxin | AGI-09 | 86.996 | |||||||||||
Cp0419 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_5 | 28815314 | 28816638 | ![]() | C_unshiu_00758 | 794 | 4329 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-09 | 88.739 | SA-09 | 44.226 | ||||||||
Af1645 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 2472805 | 2477375 | ![]() | C_unshiu_00127 | 52207 | 62775 | Class I (E and Q) tRNA synthetase | AGI-09 | 90.878 | |||||||||||
Af1437 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 1474396 | 1479079 | ![]() | C_unshiu_00060 | 309328 | 313345 | Short-chain alcohol dehydrogenase | AGI-09 | 92.804 | |||||||||||
Tf0103 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 354416 | 357301 | ![]() | C_unshiu_01920 | 10140 | 12134 | Putative NAC domain-containing protein 94 | AGI-09 | 93.685 | |||||||||||
Af1223 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27111412 | 27114276 | ![]() | C_unshiu_00347 | 66555 | 79401 | Flavin-binding kelch domain F box protein | AGI-09 | 97.668 | |||||||||||
Tf0166 | - | - | - | - | - | - | SI156 | ![]() ![]() | scaffold_5 | 19682579 | 19686163 | ![]() | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
Ov0509 | ULess informative for main cultivars | O | - | - | - | - | - | No | AGI-09 | 102.280 | RP-09 | 21.445 | ||||||||||||||||
Tf0371 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 20377552 | 20384333 | ![]() | C_unshiu_00913 | 37450 | 43326 | Hypothetical protein | AGI-09 | 102.280 | |||||||||||
Tf0130 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 19740133 | 19745806 | ![]() | C_unshiu_00050 | 195528 | 200204 | Transcription factor GAMYB | AGI-09 | 103.217 | |||||||||||
Edp005 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21203994 | 21212595 | ![]() | C_unshiu_00020 | 742433 | 758888 | Retinoblastoma protein 2 | AGI-09 | 105.195 | RP-09 | 23.442 | ||||||||
Tf0304 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 953167 | 960232 | ![]() | C_unshiu_00033 | 311804 | 317751 | Auxin response factor | AGI-09 | 113.306 | |||||||||||
Vs0015 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
Cp1011 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 25346439 | 25350875 | ![]() | C_unshiu_00087 | 398683 | 402763 | ZZ-type zinc finger-containing 3 | AGI-09 | 115.692 | |||||||||||
Af1255 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28061221 | 28063450 | ||||||||||||||||||
Af1520 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7360380 | 7367946 | ||||||||||||||||||
Bf0180 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Cp1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1537835 | 1540818 | ||||||||||||||||||
Fb0346 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Ov0129 | Ov0129.k | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2717014 | 2719856 | |||||||||||||||||
Tf0442 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23158292 | 23161424 | ||||||||||||||||||
Af0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25190682 | 25192326 | ||||||||||||||||||
Af1256 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 940514 | 942972 | ||||||||||||||||||
Af1521 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9799746 | 9804461 | ||||||||||||||||||
Al0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7359982 | 7369305 | ||||||||||||||||||
Cp1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20024370 | 20027538 | ||||||||||||||||||
Lp0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ||||||||||||||||||
Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
Tf0443 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 5886744 | 5892919 | ||||||||||||||||||
Af0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9468245 | 9468907 | ||||||||||||||||||
Af1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25059045 | 25061910 | ||||||||||||||||||
Af1522 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1507804 | 1510299 | ||||||||||||||||||
Al0217 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI350 | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | No | KmG-05S | JtR-05 | 25.182 | ||||||||||||
Bf0183 | O | - | - | - | - | - | SI308 | ![]() ![]() | scaffold_9 | 5254416 | 5256826 | ![]() | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
Cp1067 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 188504 | 192741 | ||||||||||||||||||
Lp0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3323209 | 3331825 | ||||||||||||||||||
Ov0302 | Ov0301.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
Tf0444 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 10574673 | 10578797 | ||||||||||||||||||
Af0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11373565 | 11374539 | ||||||||||||||||||
Af1258 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24591409 | 24594117 | ||||||||||||||||||
Af1523 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6231492 | 6235447 | ||||||||||||||||||
Al0218.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | ||||||||||||||||||
Cp1081 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7826603 | 7829404 | ||||||||||||||||||
Lp0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14967254 | 14971449 | ||||||||||||||||||
Ov0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25160851 | 25164999 | ||||||||||||||||||
Tf0169 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2284484 | 2302268 | ||||||||||||||||||
Tf0445 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6065092 | 6068908 | ||||||||||||||||||
Af1259 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15528851 | 15538252 | ||||||||||||||||||
Af1524 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9325319 | 9327565 | ||||||||||||||||||
Al0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 793820 | 798369 | ||||||||||||||||||
Bf0189 | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
Lp0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22362548 | 22366644 | ||||||||||||||||||
Ov0304 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6482366 | 6484923 | ||||||||||||||||||
Tf0170 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ||||||||||||||||||
Tf0446 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42990251 | 42995979 | ||||||||||||||||||
Af0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ||||||||||||||||||
Af1260 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38869666 | 38875561 | ||||||||||||||||||
Af1525 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Al0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3683537 | 3688814 | ||||||||||||||||||
Bf0193 | O | - | - | - | - | - | SI100,SI109 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
Lp0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 329518 | 331024 | ||||||||||||||||||
Tf0171 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25466629 | 25472365 | ||||||||||||||||||
Tf0447 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Af0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36883103 | 36887975 | ||||||||||||||||||
Af1261 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20321003 | 20329872 | ||||||||||||||||||
Af1526 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38852547 | 38855263 | ||||||||||||||||||
Al0221 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1086 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ||||||||||||||||||
Lp0030 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23185703 | 23187916 | ||||||||||||||||||
Tf0448 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254049 | ||||||||||||||||||
Af0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17014582 | 17026325 | ||||||||||||||||||
Af1262 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28424576 | 28427136 | ||||||||||||||||||
Af1527 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17175041 | 17177917 | ||||||||||||||||||
Al0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30607996 | 30610863 | ||||||||||||||||||
Bf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5654376 | 5658039 | ||||||||||||||||||
Cp1093 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16696979 | 16699623 | ||||||||||||||||||
Fb0374 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6777322 | 6781162 | ||||||||||||||||||
Ov0307 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4937047 | 4940138 | |||||||||||||||||
Tf0173 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26097343 | 26099320 | ![]() | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
Af0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32749064 | 32749699 | ||||||||||||||||||
Af1263 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28494348 | 28496251 | ||||||||||||||||||
Af1528 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1676368 | 1677018 | ||||||||||||||||||
Al0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17438270 | 17440122 | ![]() | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
Bf0200 | OOthers | - | - | - | - | - | - | SI335 | ![]() ![]() | scaffold_2 | 29022433 | 29030724 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | ![]() | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
Ov0308 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16730150 | 16735004 | ||||||||||||||||||
Tf0175 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 5054551 | 5056146 | ||||||||||||||||||
Tf0450 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Af0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50406028 | 50412944 | ||||||||||||||||||
Af1264 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18539347 | 18543298 | ||||||||||||||||||
Af1529 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21228791 | 21231253 | ||||||||||||||||||
Bf0201 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29370560 | 29376244 | ||||||||||||||||||
Cp1113 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 |