| Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
| Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 |   Ciclev10001621m | scaffold_5 | 34294853 | 34297359 |  C_unshiu_03047:mRNA_1.1 | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
| Al0643 | - | - | - | - | - | - | Ciclev10012685m | scaffold_6 | 11126658 | 11131076 | C_unshiu_02977:mRNA_1.1 | C_unshiu_02977 | 1950 | 2673 | Dolichyldiphosphatase 1 | AGI-08 | 56.724 | |||||||||||
| Tf0325 | OOthers | O | - | - | - | - | - | Ciclev10029355m | scaffold_8 | 6700441 | 6703748 | C_unshiu_02974:mRNA_2.1 | C_unshiu_02974 | 10142 | 13418 | B-box type zinc finger family protein | AGI-08 | 57.386 | ||||||||||
| Wy0015 | O | - | - | - | - | - | SI041 | Ciclev10028465m | scaffold_8 | 13101257 | 13103161 | C_unshiu_02878:mRNA_1.1 | C_unshiu_02878 | 9199 | 10715 | UDP-glycosyltransferase 73C5 | AGI-08 | 56.724 | ||||||||||
| Tf0122 | - | - | - | - | - | - | Ciclev10020009m | scaffold_3 | 24620623 | 24627357 | C_unshiu_02869:mRNA_1.1 | C_unshiu_02869 | 1885 | 10204 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Fb0153 | - | - | - | - | - | - | Ciclev10002324m | scaffold_5 | 36347986 | 36350649 | C_unshiu_02857:mRNA_2.1 | C_unshiu_02857 | 11994 | 14648 | Melanoma-associated antigen G1 | AGI-09 | 51.925 | RP-09 | 71.621 | |||||||||
| Ov0015 | OOthers | O | - | - | - | - | - | SI304 | Ciclev10026223m | scaffold_7 | 8255046 | 8256442 | C_unshiu_02827:mRNA_2.1 | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
| Wy0004 | - | - | - | - | - | - | C_unshiu_02819:mRNA_2.1 | C_unshiu_02819 | 2728 | 4118 | CXE carboxylesterase | AGI-08 | 70.463 | NAT-082 | 65.434 | |||||||||||||
| Wy0045 | Wy0045.k | - | - | - | - | - | - | Ciclev10028268m | scaffold_8 | 9564698 | 9566326 | C_unshiu_02764:mRNA_1.1 | C_unshiu_02764 | 1529 | 2654 | Geraniol 10-hydroxylase-like protein | AGI-08 | 56.724 | ||||||||||
| Cp1628 | - | - | - | - | - | - | Ciclev10021963m | scaffold_3 | 12822911 | 12825620 | C_unshiu_02666:mRNA_2.1 | C_unshiu_02666 | 10104 | 12687 | Rhodanese/cell cycle control phosphatase superfamily protein | AGI-05 | 41.272 | |||||||||||
| Tf0336 | - | - | - | - | - | - | Ciclev10029022m | scaffold_8 | 10574673 | 10578797 | C_unshiu_02599:mRNA_1.1 | C_unshiu_02599 | 10362 | 14310 | NAD(P)-linked oxidoreductase superfamily protein | AGI-08 | 54.304 | |||||||||||
| Tf0362 | - | - | - | - | - | - | SI062 | Ciclev10026199m | scaffold_7 | 224443 | 227133 | C_unshiu_02579:mRNA_3.1 | C_unshiu_02579 | 13228 | 15002 | WUSCHEL-related homeobox 13 | ||||||||||||
| Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | Ciclev10027790m | scaffold_8 | 21953129 | 21960709 | C_unshiu_02574:mRNA_1.1 | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
| Fb1784 | - | - | - | - | - | - | Ciclev10028959m | scaffold_8 | 445469 | 446936 | C_unshiu_02466:mRNA_2.1 | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
| Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | Ciclev10024695m | scaffold_7 | 2501520 | 2509737 | C_unshiu_02417:mRNA_1.1 | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
| Cp0719 | - | - | - | - | - | - | Ciclev10028417m | scaffold_8 | 23257043 | 23262019 | C_unshiu_02393:mRNA_2.1 | C_unshiu_02393 | 18637 | 23537 | Inner membrane protein ALBINO3 | AGI-08 | 12.793 | |||||||||||
| Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | Ciclev10004850m | scaffold_9 | 13440332 | 13442904 | C_unshiu_02379:mRNA_2.1 | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
| Cp0540 | - | - | - | - | - | - | Ciclev10020181m | scaffold_3 | 10427313 | 10435293 | C_unshiu_02340:mRNA_1.1 | C_unshiu_02340 | 2005 | 8306 | DNA repair protein reca, putative | AGI-05 | 42.191 | |||||||||||
| Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011346m | scaffold_6 | 7983788 | 7991526 | C_unshiu_02325:mRNA_1.1 | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
| Af1149 | - | - | - | - | - | - | Ciclev10025360m | scaffold_7 | 12985954 | 12989228 | C_unshiu_02261:mRNA_2.1 | C_unshiu_02261 | 19156 | 21966 | Glycerol kinase | AGI-05 | 21.630 | |||||||||||
| Af1575 | - | - | - | - | - | - | Ciclev10029551m | scaffold_8 | 17524835 | 17526697 | C_unshiu_02252:mRNA_4.1 | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
| Wy0026 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10010857m | scaffold_1 | 28321342 | 28323314 | C_unshiu_02224:mRNA_5.1 | C_unshiu_02224 | 30176 | 31684 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AGI-01 | 35.518 | ||||||||||
| Af1208 | - | - | - | - | - | - | Ciclev10029134m | scaffold_8 | 23036291 | 23037524 | C_unshiu_02220:mRNA_1.1 | C_unshiu_02220 | 11982 | 13216 | Tonoplast intrinsic protein | AGI-08 | 17.057 | |||||||||||
| Tf0011.2 | OOthers | O | - | - | - | - | - | Ciclev10018614m | scaffold_3 | 11078798 | 11089090 | C_unshiu_02207:mRNA_3.1 | C_unshiu_02207 | 9802 | 19021 | Hypothetical protein | AGI-05 | 42.191 | ||||||||||
| Ov0005 | AAvailable marker | - | - | - | - | O | O | SI243,SI331 | Ciclev10019557m | scaffold_3 | 41636616 | 41641083 | C_unshiu_02126:mRNA_2.1 | C_unshiu_02126 | 9391 | 13319 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | AGI-05 | 47.986 | |||||||||
| Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_02110:mRNA_3.2 | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
| Al0037 | - | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | |||||||||||
| Al0037.2 | Al0037.k | O | - | - | - | - | - | Ciclev10026259m | scaffold_7 | 14310100 | 14311942 | C_unshiu_02045:mRNA_3.1 | C_unshiu_02045 | 17414 | 19393 | CCR4-NOT transcription complex subunit 7 | AGI-02 | 15.816 | ||||||||||
| Gn0019 | - | - | - | - | - | - | Ciclev10002883m | scaffold_5 | 26949951 | 26952841 | C_unshiu_02041:mRNA_4.1 | C_unshiu_02041 | 18003 | 20672 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 | KmG-09 | 17.972 | JtR-09S | 22.316 | |||||||||
| Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | Ciclev10031723m | scaffold_4 | 115362 | 118025 | C_unshiu_02038:mRNA_4.1 | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
| Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10028879m | scaffold_8 | 19397294 | 19398741 | C_unshiu_02034:mRNA_3.1 | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
| Tf0449 | OOthers | O | - | - | - | - | - | Ciclev10009165m | scaffold_1 | 28254307 | 28257305 | C_unshiu_01997:mRNA_4.1 | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
| Bf0159 | - | - | - | - | - | - | SI074 | Ciclev10016059m | scaffold_2 | 13502268 | 13505597 | C_unshiu_01990:mRNA_1.1 | C_unshiu_01990 | 10471 | 13748 | DCD (Development and cell death) domain protein | RP-06.1 | 23.326 | ||||||||||
| Cp0114 | - | - | - | - | - | - | Ciclev10027515m | scaffold_7 | 15446269 | 15449214 | C_unshiu_01960:mRNA_1.1 | C_unshiu_01960 | 1400 | 4642 | DS12 from 2D-PAGE of leaf protein, putative | AGI-02 | 21.337 | |||||||||||
| Ov0515 | - | - | - | - | - | - | Ciclev10020337m | scaffold_3 | 14878427 | 14882285 | C_unshiu_01955:mRNA_4.1 | C_unshiu_01955 | 21970 | 26584 | DUF760 family protein | KmG-01 | 40.558 | |||||||||||
| Tf0103 | - | - | - | - | - | - | Ciclev10002094m | scaffold_5 | 354416 | 357301 | C_unshiu_01920:mRNA_2.1 | C_unshiu_01920 | 10140 | 12134 | Putative NAC domain-containing protein 94 | AGI-09 | 93.685 | |||||||||||
| Ov0525 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10015260m | scaffold_2 | 15833142 | 15836770 | C_unshiu_01875:mRNA_4.1 | C_unshiu_01875 | 35983 | 39196 | ADP/ATP translocase 1 | AGI-06 | 91.522 | SA-06 | 27.092 | ||||||||
| If0216 | OOthers | O | - | - | - | - | - | SI174 | Ciclev10015257m | scaffold_2 | 12876952 | 12881843 | C_unshiu_01838:mRNA_2.1 | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
| Cp2232 | AAvailable marker | - | - | - | - | O | O | Ciclev10002687m | scaffold_5 | 17809523 | 17810742 | C_unshiu_01815:mRNA_5.1 | C_unshiu_01815 | 28593 | 29777 | Photosystem I reaction center subunit N | AGI-02 | 22.436 | ||||||||||
| Al0003 | Al0003.2 | - | - | - | - | - | - | Ciclev10024637m | scaffold_3 | 41697052 | 41697860 | C_unshiu_01778:mRNA_2.1 | C_unshiu_01778 | 27362 | 28139 | Dehydrin COR15 | AGI-05 | 49.499 | ||||||||||
| Cp2237 | AAvailable marker | - | - | - | - | O | O | Ciclev10028314m | scaffold_8 | 13190041 | 13194829 | C_unshiu_01736:mRNA_2.1 | C_unshiu_01736 | 18986 | 23543 | Riboflavin biosynthesis protein ribBA, chloroplastic | AGI-08 | 55.965 | ||||||||||
| Al0401 | OOthers | O | - | - | - | - | - | Ciclev10025346m | scaffold_7 | 13180567 | 13191638 | C_unshiu_01698:mRNA_6.1 | C_unshiu_01698 | 39336 | 40206 | Hypothetical protein | KmG-02 | 26.204 | JtR-02 | -6.043 | NAT-02S | 22.960 | ||||||
| Mf0055 | DDominant marker | - | - | - | - | O | O | Ciclev10022212m | scaffold_3 | 45551345 | 45552620 | C_unshiu_01674:mRNA_4.1 | C_unshiu_01674 | 17777 | 28549 | Hypothetical protein | AGI-05 | 57.948 | KmG-05S | 75.866 | JtR-05 | 38.749 | NAT-05 | 39.573 | ||||
| Cp0062 | O | - | - | - | - | - | Ciclev10032378m | scaffold_4 | 16107199 | 16109587 | C_unshiu_01642:mRNA_2.1 | C_unshiu_01642 | 16316 | 20085 | Ribose-phosphate diphosphokinase | AGI-07 | 45.716 | |||||||||||
| Tf0196 | - | - | - | - | - | - | Ciclev10025815m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
| Al0620 | OOthers | - | - | - | - | - | - | Ciclev10025816m | scaffold_7 | 7796591 | 7799786 | C_unshiu_01633:mRNA_1.1 | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | KmG-02 | 36.964 | JtR-02 | 17.013 | ||||||||
| Tf0271 | Bno homozygous cultivar with minor allele | O | O | - | O | - | - | Ciclev10010976m | scaffold_6 | 11707953 | 11715646 | C_unshiu_01619:mRNA_7.1 | C_unshiu_01619 | 42347 | 50640 | CCR4-NOT transcription complex subunit 4 | AGI-08 | 95.613 | ||||||||||
| Ov0324 | AAvailable marker | - | - | - | - | - | O | Ciclev10030198m | scaffold_8 | 22575845 | 22578398 | C_unshiu_01619:mRNA_6.1 | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
| Cp0052 | OOthers | O | - | - | - | - | - | C_unshiu_01597:mRNA_11.1 | C_unshiu_01597 | 29471 | 42354 | Glucose-6-phosphate dehydrogenase 4 | AGI-08 | 96.035 | ||||||||||||||
| Af1453 | - | - | - | - | - | - | Ciclev10023068m | scaffold_3 | 4663211 | 4664667 | C_unshiu_01589:mRNA_7.1 | C_unshiu_01589 | 29063 | 37936 | Hypothetical protein | AGI-05 | 27.956 | |||||||||||
| Ov0112 | OOthers | - | - | - | - | - | - | Ciclev10021050m | scaffold_3 | 33252463 | 33253730 | C_unshiu_01571:mRNA_4.1 | C_unshiu_01571 | 43836 | 45084 | Sulfotransferase | KmG-05S | 42.335 | RP-05 | 53.076 | ||||||||
| Tf0153 | AAvailable marker | O | - | - | - | O | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | AGI-05 | 41.267 | ||||||||||
| Tf0154 | AAvailable marker | O | - | - | - | - | O | Ciclev10022594m | scaffold_3 | 16957427 | 16959735 | C_unshiu_01562:mRNA_2.1 | C_unshiu_01562 | 12059 | 15864 | Nascent polypeptide-associated complex subunit beta | ||||||||||||
| Tf0238 | - | - | - | - | - | - | SI114 | Ciclev10026387m | scaffold_7 | 551893 | 553909 | C_unshiu_01559:mRNA_5.1 | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
| Fb0369 | - | - | - | - | - | - | Ciclev10019885m | scaffold_3 | 7792188 | 7795727 | C_unshiu_01545:mRNA_3.1 | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
| Al0225 | - | - | - | - | - | - | Ciclev10001539m | scaffold_5 | 41093725 | 41097411 | C_unshiu_01543:mRNA_6.1 | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
| Ov0122 | OOthers | - | - | - | - | - | - | Ciclev10019557m | scaffold_3 | 41636616 | 41641083 | C_unshiu_01535:mRNA_2.2 | C_unshiu_01535 | 14018 | 19080 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | KmG-05S | 65.738 | JtR-05 | 41.268 | ||||||||
| Tf0201 | O | - | - | - | - | - | SI195 | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
| Gmom23 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
| Gmom24 | - | - | - | - | - | - | Ciclev10025985m | scaffold_7 | 15182950 | 15186486 | C_unshiu_01526:mRNA_4.1 | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
| Af1556 | - | - | - | - | - | - | Ciclev10026643m | scaffold_7 | 11107041 | 11109191 | C_unshiu_01501:mRNA_6.1 | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
| Tf0119 | AAvailable marker | - | - | - | - | O | O | Ciclev10014416m | scaffold_2 | 35564238 | 35570619 | C_unshiu_01497:mRNA_5.1 | C_unshiu_01497 | 20297 | 33375 | Hypothetical protein | AGI-06 | 19.002 | ||||||||||
| If0002 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10016861m | scaffold_2 | 35546692 | 35549207 | C_unshiu_01497:mRNA_3.1 | C_unshiu_01497 | 10215 | 14601 | YggS family pyridoxal phosphate enzyme | AGI-06 | 19.002 | KmG-06 | 62.901 | ||||||||
| Fb0296 | - | - | - | - | - | - | Ciclev10014378m | scaffold_2 | 22689124 | 22695586 | C_unshiu_01495:mRNA_8.1 | C_unshiu_01495 | 60336 | 62557 | Hypothetical protein | RP-06.1 | 10.382 | |||||||||||
| Lp0145 | - | - | - | - | - | - | C_unshiu_01491:mRNA_8.1 | C_unshiu_01491 | 47122 | 50568 | Class I glutamine amidotransferase superfamily protein | KmG-05S | 40.802 | JtR-05 | ||||||||||||||
| Cp0703 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | AGI-08 | 43.089 | |||||||||||
| Al0018 | - | - | - | - | - | - | Ciclev10029499m | scaffold_8 | 19546541 | 19549348 | C_unshiu_01460:mRNA_6.1 | C_unshiu_01460 | 35683 | 36517 | Ferredoxin | RP-08 | 23.447 | |||||||||||
| Cp1523 | AAvailable marker | - | - | - | - | O | O | Ciclev10005519m | scaffold_9 | 1356758 | 1359310 | C_unshiu_01431:mRNA_7.1 | C_unshiu_01431 | 31518 | 37086 | Hypothetical protein | AGI-03 | 12.606 | ||||||||||
| Af1110 | - | - | - | - | - | - | Ciclev10028599m | scaffold_8 | 9656865 | 9660001 | C_unshiu_01425:mRNA_1.1 | C_unshiu_01425 | 333 | 5522 | N-carbamoylputrescine amidase | AGI-08 | 56.690 | |||||||||||
| Tf0054 | O | - | - | - | - | - | SI238 | Ciclev10000100m | scaffold_5 | 43108998 | 43114214 | C_unshiu_01422:mRNA_2.1 | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
| Mf0084 | OOthers | - | - | - | - | - | - | SI383 | Ciclev10012898m | scaffold_6 | 40381 | 43868 | C_unshiu_01371:mRNA_1.1 | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
| Cp1996 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10002770m | scaffold_5 | 29463604 | 29466318 | C_unshiu_01370:mRNA_6.1 | C_unshiu_01370 | 46574 | 49106 | Sec-independent protein translocase protein TatA | AGI-09 | 86.532 | RP-09 | 33.820 | ||||||||
| Al0612 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10001524m | scaffold_5 | 29481817 | 29485113 | C_unshiu_01370:mRNA_2.1 | C_unshiu_01370 | 27014 | 30283 | UDP-glucuronic acid decarboxylase 1 | KmG-09 | 28.332 | JtR-09S | 32.873 | ||||||||
| Tf0412 | - | - | - | - | - | - | Ciclev10028306m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||||
| Tf0150 | AAvailable marker | O | O | - | O | O | O | SI262 | Ciclev10028292m | scaffold_8 | 22191056 | 22193554 | C_unshiu_01354:mRNA_7.2 | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||
| Bf0232 | - | - | - | - | - | - | Ciclev10031191m | scaffold_4 | 21861774 | 21865635 | C_unshiu_01346:mRNA_3.1 | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
| Af2893 | - | - | - | - | - | - | Ciclev10025356m | scaffold_7 | 1739443 | 1743149 | C_unshiu_01334:mRNA_6.1 | C_unshiu_01334 | 25863 | 29359 | Putative mitochondrial chaperone BCS1-B | AGI-02 | 73.779 | |||||||||||
| Gmom03 | - | - | - | - | - | - | Ciclev10019436m | scaffold_3 | 1864604 | 1871328 | C_unshiu_01325:mRNA_3.1 | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
| Wy0016 | - | - | - | - | - | - | SI068 | Ciclev10011522m | scaffold_6 | 18491789 | 18493623 | C_unshiu_01309:mRNA_6.1 | C_unshiu_01309 | 21942 | 23382 | UDP-glycosyltransferase 71B1 | KmG-04 | 47.990 | ||||||||||
| Tf0286 | DDominant marker | O | - | - | - | - | - | Ciclev10011556m | scaffold_6 | 25001586 | 25004619 | C_unshiu_01279:mRNA_6.1 | C_unshiu_01279 | 43222 | 46082 | Dof zinc finger protein DOF5.2 | AGI-04 | 32.710 | ||||||||||
| Edb003 | OOthers | - | - | - | - | - | - | Ciclev10032012m | scaffold_4 | 16046322 | 16048971 | C_unshiu_01260:mRNA_4.1 | C_unshiu_01260 | 30136 | 32342 | Putative WRKY transcription factor 28 | AGI-07 | 41.830 | ||||||||||
| Ov0502 | - | - | - | - | - | - | C_unshiu_01254:mRNA_7.1 | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
| Af1047 | - | - | - | - | - | - | Ciclev10019002m | scaffold_3 | 16357227 | 16363309 | C_unshiu_01252:mRNA_3.1 | C_unshiu_01252 | 60669 | 66705 | NADH dehydrogenase subunit 11 | AGI-05 | 41.306 | |||||||||||
| Cp0076 | O | - | - | - | - | - | Ciclev10021577m | scaffold_3 | 6329133 | 6332201 | C_unshiu_01248:mRNA_3.1 | C_unshiu_01248 | 39031 | 42057 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-05 | 35.411 | |||||||||||
| Vt0030 | Vt0030.k | O | - | - | - | - | - | Ciclev10024917m | scaffold_7 | 11271705 | 11277014 | C_unshiu_01240:mRNA_4.1 | C_unshiu_01240 | 27655 | 32960 | Phospholipase D | AGI-02 | 12.615 | ||||||||||
| Al0624 | - | - | - | - | - | - | Ciclev10021584m | scaffold_3 | 42647413 | 42652459 | C_unshiu_01228:mRNA_6.1 | C_unshiu_01228 | 43617 | 48513 | Tetraspanin family protein | AGI-05 | 29.354 | |||||||||||
| Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | Ciclev10027769m | scaffold_8 | 13408610 | 13413938 | C_unshiu_01226:mRNA_1.1 | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
| Cp1885 | AAvailable marker | - | - | - | - | - | O | Ciclev10014471m | scaffold_2 | 11418331 | 11422116 | C_unshiu_01218:mRNA_4.1 | C_unshiu_01218 | 14084 | 22447 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic | ||||||||||||
| Em0004 | Fb1532.em | - | - | - | - | - | - | Ciclev10015815m | scaffold_2 | 11585699 | 11587422 | C_unshiu_01211:mRNA_9.1 | C_unshiu_01211 | 67756 | 69149 | Transparent testa glabra 1 | AGI-02 | 11.835 | ||||||||||
| Al0320 | - | - | - | - | - | - | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
| Al0320.2 | Al0320.em | AAvailable marker | - | - | - | - | - | O | Ciclev10020878m | scaffold_3 | 541575 | 543121 | C_unshiu_01206:mRNA_1.1 | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||
| Lp0219 | - | - | - | - | - | - | Ciclev10032329m | scaffold_4 | 6128952 | 6131314 | C_unshiu_01202:mRNA_8.1 | C_unshiu_01202 | 57691 | 60017 | Acyl-CoA N-acyltransferases superfamily protein isoform 1 | AGI-01 | 61.636 | NAT-01S | 60.000 | |||||||||
| Mf0052 | - | - | - | - | - | - | Ciclev10005897m | scaffold_9 | 28054214 | 28056032 | C_unshiu_01194:mRNA_11.1 | C_unshiu_01194 | 83573 | 84813 | Envelope glycoprotein | |||||||||||||
| Cp1477 | - | - | - | - | - | - | Ciclev10001770m | scaffold_5 | 36095844 | 36099890 | C_unshiu_01173:mRNA_9.1 | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
| If0207 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_01172:mRNA_2.1 | C_unshiu_01172 | 28413 | 28712 | Hypothetical protein | AGI-07 | 45.716 | ||||||||||||||
| Tf0053 | - | - | - | - | - | - | SI305 | Ciclev10022321m | scaffold_3 | 29153425 | 29156189 | C_unshiu_01169:mRNA_3.1 | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
| Cp1361 | AAvailable marker | - | - | - | - | O | O | Ciclev10013042m | scaffold_6 | 21714716 | 21717652 | C_unshiu_01167:mRNA_14.1 | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
| Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10030351m | scaffold_8 | 67997 | 74191 | C_unshiu_01137:mRNA_4.1 | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
| Bf0183 | O | - | - | - | - | - | SI308 | Ciclev10005208m | scaffold_9 | 5254416 | 5256826 | C_unshiu_01106:mRNA_9.1 | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
| Tf0152 | AAvailable marker | O | - | - | - | O | O | Ciclev10021000m | scaffold_3 | 2002427 | 2008126 | C_unshiu_01105:mRNA_2.1 | C_unshiu_01105 | 3681 | 8106 | AT-hook motif nuclear localized protein 1 | AGI-05 | 8.506 | ||||||||||
| Lp0207 | O | - | - | - | - | - | Ciclev10021695m | scaffold_3 | 6140332 | 6142252 | C_unshiu_01103:mRNA_8.1 | C_unshiu_01103 | 67531 | 69104 | Protein ODORANT1 | AGI-05 | 45.374 | RP-05 | 25.010 | |||||||||
| Bf0104 | O | - | - | - | - | - | C_unshiu_01101:mRNA_8.1 | C_unshiu_01101 | 77694 | 80951 | 12-oxophytodienoate reductase 2 | AGI-05 | 41.306 | NAT-05 | ||||||||||||||
| Cp1084 | OOthers | - | - | - | - | - | - | C_unshiu_01090:mRNA_3.1 | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
| Tf0070 | OOthers | O | - | - | - | - | - | SI277 | Ciclev10002250m | scaffold_5 | 39748754 | 39753073 | C_unshiu_01089:mRNA_6.1 | C_unshiu_01089 | 22643 | 26826 | Basic helix-loop-helix family protein | AGI-09 | 45.029 | |||||||||
| Af1623 | - | - | - | - | - | - | Ciclev10032683m | scaffold_4 | 612480 | 615318 | C_unshiu_01079:mRNA_2.2 | C_unshiu_01079 | 3136 | 5814 | Thylakoid lumenal 15 kDa protein 1, chloroplastic | AGI-07 | 7.907 | |||||||||||
| Tf0289 | - | - | - | - | - | - | SI207 | Ciclev10020486m | scaffold_3 | 915818 | 919213 | C_unshiu_01070:mRNA_6.1 | C_unshiu_01070 | 43545 | 46732 | Putative E3 ubiquitin-protein ligase UBR7 | ||||||||||||
| Tf0357 | - | - | - | - | - | - | SI018 | Ciclev10025390m | scaffold_7 | 2246732 | 2249558 | C_unshiu_01055:mRNA_7.1 | C_unshiu_01055 | 60614 | 63050 | Zinc finger protein JACKDAW | AGI-02 | 71.294 | ||||||||||
| Tf0036 | AAvailable marker | O | - | - | - | O | O | Ciclev10022032m | scaffold_3 | 43850269 | 43852816 | C_unshiu_01051:mRNA_11.1 | C_unshiu_01051 | 94369 | 96339 | Auxin-responsive protein IAA14 | AGI-05 | 53.260 | ||||||||||
| Tf0300 | AAvailable marker | O | O | - | - | O | O | Ciclev10022370m | scaffold_3 | 43862440 | 43863744 | C_unshiu_01051:mRNA_10.1 | C_unshiu_01051 | 83417 | 84406 | Auxin-induced protein IAA4 | AGI-05 | 54.726 | ||||||||||
| Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_01048:mRNA_12.1 | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
| Cp0065 | O | - | - | - | - | - | Ciclev10002793m | scaffold_5 | 8435123 | 8435971 | C_unshiu_01044:mRNA_2.1 | C_unshiu_01044 | 7117 | 7963 | Ferredoxin | AGI-09 | 86.996 | |||||||||||
| Tf0125 | - | - | - | - | - | - | Ciclev10025501m | scaffold_7 | 16249523 | 16255343 | C_unshiu_01042:mRNA_11.1 | C_unshiu_01042 | 86577 | 91963 | Ubiquitin-specific protease family C19 protein | AGI-02 | 21.337 | |||||||||||
| Gn0021 | AAvailable marker | - | - | - | - | O | O | Ciclev10000597m | scaffold_5 | 39630111 | 39635609 | C_unshiu_01033:mRNA_10.1 | C_unshiu_01033 | 47799 | 53166 | Somatic embryogenesis receptor kinase 1 | AGI-09 | 42.621 | KmG-09 | 68.220 | JtR-09S | 97.453 | NAT-09 | 83.381 | ||||
| Af1345 | - | - | - | - | - | - | Ciclev10013023m | scaffold_6 | 13082313 | 13084012 | C_unshiu_01022:mRNA_2.1 | C_unshiu_01022 | 8566 | 10161 | Histone H2A | AGI-08 | 93.624 | |||||||||||
| Cp0073 | O | - | - | - | - | - | Ciclev10020501m | scaffold_3 | 5972288 | 5978062 | C_unshiu_00997:mRNA_9.1 | C_unshiu_00997 | 69257 | 75059 | Transaldolase | AGI-05 | 34.924 | |||||||||||
| Fb1678 | O | - | - | - | - | - | Ciclev10022198m | scaffold_3 | 6000266 | 6002833 | C_unshiu_00997:mRNA_6.2 | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
| Cp2208 | AAvailable marker | - | - | - | - | - | O | Ciclev10021564m | scaffold_3 | 7420176 | 7425027 | C_unshiu_00995:mRNA_4.1 | C_unshiu_00995 | 39031 | 43144 | D-ribulose-5-phosphate-3-epimerase isoform 1 | ||||||||||||
| Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | Ciclev10015385m | scaffold_2 | 4021167 | 4024377 | C_unshiu_00992:mRNA_13.1 | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
| Tf0332 | - | - | - | - | - | - | SI081 | Ciclev10001976m | scaffold_5 | 37586834 | 37589255 | C_unshiu_00985:mRNA_11.1 | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
| Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | Ciclev10028839m | scaffold_8 | 24721937 | 24724569 | C_unshiu_00984:mRNA_8.1 | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
| Tf0335 | - | - | - | - | - | - | SI014,SI168 | Ciclev10033529m | scaffold_4 | 2457798 | 2458868 | C_unshiu_00979:mRNA_19.1 | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
| Vt0029 | - | - | - | - | - | - | Ciclev10031975m | scaffold_4 | 2451345 | 2454325 | C_unshiu_00979:mRNA_17.1 | C_unshiu_00979 | 79016 | 81937 | GroES-like zinc-binding alcohol dehydrogenase family protein | AGI-07 | 13.238 | |||||||||||
| Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | Ciclev10032770m | scaffold_4 | 2422861 | 2424838 | C_unshiu_00979:mRNA_13.2 | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
| Af1486 | - | - | - | - | - | - | Ciclev10029576m | scaffold_8 | 17510926 | 17513265 | C_unshiu_00962:mRNA_1.1 | C_unshiu_00962 | 434 | 2684 | Prefoldin subunit 4 | AGI-08 | 59.562 | |||||||||||
| Al0028 | - | - | - | - | - | - | Ciclev10016123m | scaffold_2 | 11604956 | 11606340 | C_unshiu_00957:mRNA_11.1 | C_unshiu_00957 | 38508 | 39910 | Xyloglucan endotransglucosylase/hydrolase protein A | RP-06.1 | 28.573 | |||||||||||
| Cp2223 | OOthers | - | - | - | - | - | - | Ciclev10022371m | scaffold_3 | 3483334 | 3485637 | C_unshiu_00933:mRNA_9.1 | C_unshiu_00933 | 86958 | 89273 | Protein LATERAL ORGAN BOUNDARIES | AGI-05 | 25.049 | ||||||||||
| Tf0210 | - | - | - | - | - | - | SI183 | Ciclev10004533m | scaffold_9 | 11993282 | 11999324 | C_unshiu_00926:mRNA_13.1 | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
| Cp0100 | O | - | - | - | - | - | Ciclev10024866m | scaffold_7 | 10471136 | 10474241 | C_unshiu_00924:mRNA_4.1 | C_unshiu_00924 | 50269 | 52902 | Tetratricopeptide repeat-like superfamily protein | AGI-02 | 14.111 | |||||||||||
| Fb0321 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10027873m | scaffold_8 | 6834487 | 6837762 | C_unshiu_00918:mRNA_1.1 | C_unshiu_00918 | 5010 | 7626 | Arginine decarboxylase 1 | AGI-08 | 56.405 | JtR-08 | 25.280 | ||||||||
| Tf0371 | - | - | - | - | - | - | Ciclev10002081m | scaffold_5 | 20377552 | 20384333 | C_unshiu_00913:mRNA_4.1 | C_unshiu_00913 | 37450 | 43326 | Hypothetical protein | AGI-09 | 102.280 | |||||||||||
| Af1452 | - | - | - | - | - | - | Ciclev10018443m | scaffold_3 | 5518457 | 5529974 | C_unshiu_00900:mRNA_3.1 | C_unshiu_00900 | 20186 | 30140 | Pheromone-processing carboxypeptidase kex1 | AGI-05 | 29.863 | |||||||||||
| Fb0357 | O | - | - | - | - | - | SI384 | Ciclev10001633m | scaffold_5 | 40550222 | 40554434 | C_unshiu_00889:mRNA_6.1 | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
| Af1398 | - | - | - | - | - | - | Ciclev10030393m | scaffold_8 | 7899376 | 7902959 | C_unshiu_00887:mRNA_6.1 | C_unshiu_00887 | 49120 | 57547 | Hypothetical protein | AGI-08 | 57.551 | |||||||||||
| Af1515 | - | - | - | - | - | - | Ciclev10027760m | scaffold_8 | 20838053 | 20844872 | C_unshiu_00883:mRNA_4.1 | C_unshiu_00883 | 60978 | 104832 | Argonaute 1 | AGI-08 | 40.438 | |||||||||||
| Cp0030 | O | - | - | - | - | - | Ciclev10019700m | scaffold_3 | 43815647 | 43818118 | C_unshiu_00869:mRNA_1.1 | C_unshiu_00869 | 176 | 1664 | Phospholipase A1-Igamma1, chloroplastic | AGI-05 | 53.642 | |||||||||||
| Cp1598 | AAvailable marker | - | - | - | - | O | O | Ciclev10021001m | scaffold_3 | 3802387 | 3805494 | C_unshiu_00849:mRNA_13.2 | C_unshiu_00849 | 72935 | 75824 | 31 kDa ribonucleoprotein | AGI-05 | 12.715 | ||||||||||
| Tf0267 | AAvailable marker | O | - | - | - | O | O | Ciclev10031834m | scaffold_4 | 12571526 | 12575185 | C_unshiu_00847:mRNA_8.1 | C_unshiu_00847 | 48651 | 52296 | Squamosa promoter-binding-like protein 13 | AGI-07 | 37.800 | ||||||||||
| Mf0067 | OOthers | - | - | - | - | - | - | Ciclev10008855m | scaffold_1 | 7264569 | 7269002 | C_unshiu_00837:mRNA_9.1 | C_unshiu_00837 | 91807 | 96079 | Protein phosphatase 1 regulatory subunit pprA | KmG-032 | 18.460 | JtR-031 | 13.247 | ||||||||
| Cp0634 | - | - | - | - | - | - | Ciclev10031740m | scaffold_4 | 15660463 | 15665838 | C_unshiu_00824:mRNA_8.1 | C_unshiu_00824 | 96745 | 119992 | Hypothetical protein | AGI-07 | 32.589 | |||||||||||
| Gn0100 | - | - | - | - | - | - | Ciclev10028245m | scaffold_8 | 19259623 | 19261508 | C_unshiu_00814:mRNA_2.1 | C_unshiu_00814 | 13987 | 15768 | Putative lycopene beta cyclase | AGI-08 | 44.669 | |||||||||||
| Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
| Sd0004 | - | - | - | - | - | - | C_unshiu_00810:mRNA_8.1 | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 40.459 | |||||||||||||||
| Al0011 | Al0010.2 | - | - | - | - | - | - | Ciclev10012654m | scaffold_6 | 10316999 | 10318328 | C_unshiu_00806:mRNA_1.2 | C_unshiu_00806 | 21305 | 22892 | Polyubiquitin | AGI-03 | 46.768 | ||||||||||
| Tf0257 | - | - | - | - | - | - | SI049 | Ciclev10019816m | scaffold_3 | 43654587 | 43656842 | C_unshiu_00805:mRNA_2.1 | C_unshiu_00805 | 5667 | 6759 | Transcription factor bHLH3 | ||||||||||||
| Lp0126 | AAvailable marker | O | - | - | - | O | O | Ciclev10025164m | scaffold_7 | 3946818 | 3949964 | C_unshiu_00801:mRNA_10.1 | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
| Bf0158 | - | O | - | O | - | - | SI376 | Ciclev10021285m | scaffold_3 | 5253281 | 5254755 | C_unshiu_00795:mRNA_3.1 | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
| Tf0027 | - | - | - | - | - | - | SI046 | Ciclev10026602m | scaffold_7 | 13911684 | 13912447 | C_unshiu_00792:mRNA_11.1 | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
| Tf0096 | O | - | - | - | - | - | Ciclev10028804m | scaffold_8 | 21369373 | 21370728 | C_unshiu_00784:mRNA_1.1 | C_unshiu_00784 | 297 | 1652 | Transcription factor RAX3 | AGI-08 | 34.042 | |||||||||||
| Tf0311 | AAvailable marker | O | - | - | - | O | O | Ciclev10011596m | scaffold_6 | 15932016 | 15936176 | C_unshiu_00779:mRNA_8.1 | C_unshiu_00779 | 78105 | 81377 | Auxin transporter-like protein 2 | AGI-08 | 91.890 | ||||||||||
| Af1096 | - | - | - | - | - | - | Ciclev10020597m | scaffold_3 | 42061488 | 42063267 | C_unshiu_00778:mRNA_10.1 | C_unshiu_00778 | 89741 | 91509 | Cytochrome P450 82A4 | AGI-05 | 51.052 | |||||||||||
| Tf0232 | - | - | - | - | - | - | SI258,SI261 | Ciclev10001105m | scaffold_5 | 37066208 | 37070717 | C_unshiu_00773:mRNA_3.1 | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
| Ov0407 | AAvailable marker | - | - | - | - | O | O | Ciclev10000563m | scaffold_5 | 37043417 | 37051080 | C_unshiu_00773:mRNA_1.1 | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
| Cp1533 | - | - | - | - | - | - | Ciclev10021868m | scaffold_3 | 4831751 | 4834270 | C_unshiu_00768:mRNA_14.1 | C_unshiu_00768 | 110682 | 113065 | Lil3 protein | AGI-05 | 29.039 | |||||||||||
| Tf0061 | - | - | - | - | - | - | SI150,SI186 | Ciclev10001592m | scaffold_5 | 35159690 | 35164384 | C_unshiu_00764:mRNA_4.1 | C_unshiu_00764 | 30899 | 36628 | Auxin-responsive protein IAA8 | AGI-09 | 61.651 | ||||||||||
| Cp1736 | - | - | - | - | - | - | Ciclev10026179m | scaffold_7 | 5640058 | 5643125 | C_unshiu_00761:mRNA_15.2 | C_unshiu_00761 | 89991 | 92755 | Protein CbbY | AGI-02 | 50.716 | |||||||||||
| Lp0108 | AAvailable marker | - | - | - | - | - | O | Ciclev10026340m | scaffold_7 | 5554619 | 5556993 | C_unshiu_00761:mRNA_5.1 | C_unshiu_00761 | 18704 | 21072 | 40S ribosomal protein S6 | KmG-02 | 41.508 | JtR-02 | 18.351 | ||||||||
| Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | Ciclev10020840m | scaffold_3 | 30648732 | 30651259 | C_unshiu_00759:mRNA_1.1 | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
| Cp0419 | AAvailable marker | - | O | - | - | O | O | Ciclev10002215m | scaffold_5 | 28815314 | 28816638 | C_unshiu_00758:mRNA_1.1 | C_unshiu_00758 | 794 | 4329 | ATP-dependent Clp protease, proteolytic subunit ClpP | AGI-09 | 88.739 | SA-09 | 44.226 | ||||||||
| Af1593 | - | - | - | - | - | - | Ciclev10015971m | scaffold_2 | 27738397 | 27741912 | C_unshiu_00745:mRNA_8.1 | C_unshiu_00745 | 82265 | 85742 | Prolactin regulatory element-binding protein, putative | AGI-06 | 61.501 | |||||||||||
| Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | Ciclev10018252m | scaffold_2 | 27774863 | 27778271 | C_unshiu_00745:mRNA_6.1 | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
| Cp2210 | AAvailable marker | - | - | - | - | - | O | Ciclev10007886m | scaffold_1 | 8125279 | 8130885 | C_unshiu_00744:mRNA_3.1 | C_unshiu_00744 | 19836 | 25320 | 6-phosphofructokinase isoform 1 | ||||||||||||
| Cp0106 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10020606m | scaffold_3 | 11867765 | 11869679 | C_unshiu_00741:mRNA_6.1 | C_unshiu_00741 | 44989 | 55203 | Wall associated kinase-like 6, putative | AGI-03 | 40.566 | ||||||||||
| Cp0047 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10021599m | scaffold_3 | 40918148 | 40922656 | C_unshiu_00735:mRNA_16.1 | C_unshiu_00735 | 120088 | 124350 | Hypothetical protein | AGI-05 | 48.590 | ||||||||||
| Gn0063 | OOthers | O | - | - | - | - | - | Ciclev10019925m | scaffold_3 | 40937725 | 40942854 | C_unshiu_00735:mRNA_14.1 | C_unshiu_00735 | 99621 | 103733 | Violaxanthin de-epoxidase | AGI-08 | 60.140 | KmG-07 | 31.750 | ||||||||
| Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | Ciclev10020717m | scaffold_3 | 40963774 | 40965744 | C_unshiu_00735:mRNA_9.1 | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
| Ov0404 | AAvailable marker | - | - | - | - | - | O | Ciclev10002415m | scaffold_5 | 29768091 | 29769281 | C_unshiu_00731:mRNA_6.3 | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
| Bf0116 | - | - | - | - | - | - | SI260 | Ciclev10015490m | scaffold_2 | 7662753 | 7667440 | C_unshiu_00729:mRNA_11.1 | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
| Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | Ciclev10029386m | scaffold_8 | 8176371 | 8177435 | C_unshiu_00728:mRNA_1.1 | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
| Mf0060 | - | - | - | - | - | - | C_unshiu_00715:mRNA_6.1 | C_unshiu_00715 | 29601 | 30242 | Hypothetical protein | JtR-07 | 56.497 | |||||||||||||||
| Cp0974 | - | - | - | - | - | - | Ciclev10011578m | scaffold_6 | 8029488 | 8035109 | C_unshiu_00711:mRNA_6.1 | C_unshiu_00711 | 128510 | 138133 | Hypothetical protein | AGI-04 | 107.018 | |||||||||||
| Wy0023 | - | - | - | - | - | - | SI037 | Ciclev10025834m | scaffold_7 | 70855 | 73880 | C_unshiu_00706:mRNA_12.1 | C_unshiu_00706 | 76103 | 78923 | Thioredoxin-disulfide reductase | ||||||||||||
| Tf0032 | AAvailable marker | O | - | - | - | O | O | Ciclev10026014m | scaffold_7 | 94155 | 97631 | C_unshiu_00706:mRNA_8.1 | C_unshiu_00706 | 51525 | 54837 | AT-hook motif nuclear-localized protein 10 | AGI-02 | 78.531 | ||||||||||
| Al0627 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10025602m | scaffold_7 | 128539 | 131642 | C_unshiu_00706:mRNA_3.1 | C_unshiu_00706 | 16590 | 18098 | Trigalactosyldiacylglycerol 1 isoform 1 | AGI-02 | 78.531 | ||||||||||
| Lp0004 | OOthers | - | - | - | - | - | - | Ciclev10026144m | scaffold_7 | 15376818 | 15378771 | C_unshiu_00703:mRNA_1.1 | C_unshiu_00703 | 2793 | 4693 | C6HC-type zinc finger RING/U-box protein | AGI-02 | 20.292 | KmG-02 | 15.368 | RP-02 | 11.119 | ||||||
| Gn0004 | - | - | - | - | - | - | Ciclev10026028m | scaffold_7 | 6011523 | 6014015 | C_unshiu_00696:mRNA_14.1 | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
| Tf0350 | OOthers | O | - | - | - | - | - | SI132 | Ciclev10019034m | scaffold_3 | 8914744 | 8921411 | C_unshiu_00695:mRNA_7.1 | C_unshiu_00695 | 71483 | 77987 | Acetyl-coenzyme A synthetase | AGI-05 | 43.295 | |||||||||
| Cp1483 | - | - | - | - | - | - | Ciclev10020574m | scaffold_3 | 20762974 | 20770394 | C_unshiu_00692:mRNA_14.1 | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
| Tf0144 | - | - | - | - | - | - | SI125,SI189,SI192 | Ciclev10028782m | scaffold_8 | 8009000 | 8012045 | C_unshiu_00682:mRNA_12.1 | C_unshiu_00682 | 86334 | 89311 | Transcription factor bHLH121 | AGI-08 | 56.439 | ||||||||||
| Al0240 | AAvailable marker | - | - | - | - | O | O | Ciclev10028497m | scaffold_8 | 8033465 | 8038415 | C_unshiu_00682:mRNA_9.1 | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
| Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | C_unshiu_00679:mRNA_13.1 | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
| Cp2154 | - | - | - | - | - | - | SI164 | Ciclev10009584m | scaffold_1 | 20462860 | 20465557 | C_unshiu_00670:mRNA_8.1 | C_unshiu_00670 | 44502 | 47121 | 50S ribosomal protein L24, chloroplastic | ||||||||||||
| Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | Ciclev10018691m | scaffold_3 | 34696661 | 34702240 | C_unshiu_00669:mRNA_17.2 | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
| Cp0748 | - | - | - | - | - | - | Ciclev10022288m | scaffold_3 | 34673451 | 34674900 | C_unshiu_00669:mRNA_14.1 | C_unshiu_00669 | 103814 | 104779 | Light-dependent short hypocotyls protein | AGI-01 | 33.562 | |||||||||||
| Cp0257 | - | - | - | - | - | - | Ciclev10001536m | scaffold_5 | 36526073 | 36528589 | C_unshiu_00657:mRNA_4.1 | C_unshiu_00657 | 52199 | 54744 | Trehalose-phosphatase | AGI-09 | 48.390 | |||||||||||
| Af1482 | - | - | - | - | - | - | Ciclev10001945m | scaffold_5 | 36550507 | 36552800 | C_unshiu_00657:mRNA_2.2 | C_unshiu_00657 | 28541 | 30831 | DRE binding transcription factor | AGI-09 | 49.255 | |||||||||||
| Al0621 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10025875m | scaffold_7 | 4575503 | 4577125 | C_unshiu_00656:mRNA_8.1 | C_unshiu_00656 | 32940 | 34329 | Hypothetical protein | AGI-02 | 60.566 | KmG-02 | 47.196 | JtR-02 | 28.472 | ||||||
| Ov0004 | - | - | - | - | - | - | Ciclev10025545m | scaffold_7 | 20360086 | 20363290 | C_unshiu_00650:mRNA_9.1 | C_unshiu_00650 | 86670 | 89289 | Myo-inositol-1 phosphate synthase | KmG-02 | 17.680 | NAT-02S | ||||||||||
| Bf0415 | - | - | - | - | - | - | C_unshiu_00643:mRNA_7.1 | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
| Al0416 | OOthers | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00639:mRNA_12.1 | C_unshiu_00639 | 90698 | 99467 | Elongation factor 1-alpha | AGI-08 | 23.023 | JtR-07 | 60.405 | NAT-082 | 21.126 | ||||||
| Lp0031 | - | - | - | - | - | - | Ciclev10027944m | scaffold_8 | 22261408 | 22266208 | C_unshiu_00639:mRNA_5.1 | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
| Tf0345 | - | - | - | - | - | - | SI011 | Ciclev10027918m | scaffold_8 | 22248129 | 22254029 | C_unshiu_00639:mRNA_3.1 | C_unshiu_00639 | 31842 | 37665 | Auxin response factor | ||||||||||||
| Cp0975 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10012312m | scaffold_6 | 7924189 | 7928192 | C_unshiu_00631:mRNA_15.1 | C_unshiu_00631 | 149702 | 153660 | Isopentenyl pyrophosphate isomerase | AGI-07 | 29.152 | ||||||||||
| Af1207 | - | - | - | - | - | - | Ciclev10025335m | scaffold_7 | 15605065 | 15607345 | C_unshiu_00628:mRNA_20.1 | C_unshiu_00628 | 144683 | 146646 | Flavonoid 3'-monooxygenase | AGI-02 | 21.344 | |||||||||||
| Wy0006 | O | - | - | - | - | - | Ciclev10021901m | scaffold_3 | 4903592 | 4905871 | C_unshiu_00628:mRNA_6.1 | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | KmG-05S | 19.072 | JtR-05 | 19.698 | NAT-05 | 21.803 | |||||||
| Bf0165 | - | - | - | - | - | - | SI280 | Ciclev10021901m | scaffold_3 | 4903592 | 4905871 | C_unshiu_00628:mRNA_6.1 | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
| Bf0030 | O | - | - | - | - | - | Ciclev10022841m | scaffold_3 | 46452893 | 46453717 | C_unshiu_00627:mRNA_10.1 | C_unshiu_00627 | 45215 | 45931 | Calvin cycle protein CP12 | RP-05 | 58.661 | |||||||||||
| Cp1709 | AAvailable marker | - | - | - | - | - | O | Ciclev10025382m | scaffold_7 | 1450748 | 1452915 | C_unshiu_00624:mRNA_14.1 | C_unshiu_00624 | 137579 | 139378 | Cytochrome P450 84A1 | ||||||||||||
| Lp0019 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10026623m | scaffold_7 | 20922631 | 20924709 | C_unshiu_00622:mRNA_2.1 | C_unshiu_00622 | 28630 | 30583 | 50S ribosomal protein L29, chloroplastic | KmG-02 | 4.377 | JtR-02 | -6.938 | ||||||||
| Gmom13 | - | - | - | - | - | - | Ciclev10005787m | scaffold_9 | 13223034 | 13225922 | C_unshiu_00620:mRNA_11.2 | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
| Wy0030 | AAvailable marker | O | - | - | - | O | O | Ciclev10001854m | scaffold_5 | 36229310 | 36230518 | C_unshiu_00619:mRNA_10.1 | C_unshiu_00619 | 87213 | 88404 | EXORDIUM like 2 | AGI-09 | 53.205 | KmG-09 | 44.154 | JtR-09S | 63.577 | NAT-09 | 65.585 | ||||
| Cp0190 | OOthers | - | - | - | - | - | - | Ciclev10023646m | scaffold_3 | 18648426 | 18650443 | C_unshiu_00618:mRNA_5.1 | C_unshiu_00618 | 20273 | 22297 | UPF0426 protein, chloroplastic | AGI-06 | 27.617 | ||||||||||
| Gn0018 | - | - | - | - | - | - | Ciclev10030969m | scaffold_4 | 5053540 | 5061039 | C_unshiu_00616:mRNA_15.1 | C_unshiu_00616 | 99349 | 106841 | V-type H+-transporting ATPase subunit A | AGI-08 | 84.345 | KmG-02 | 16.986 | |||||||||
| Bf0409 | - | - | - | - | - | - | C_unshiu_00616:mRNA_6.1 | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
| Vt0003 | - | - | - | - | - | - | Ciclev10027667m | scaffold_8 | 8153660 | 8174407 | C_unshiu_00616:mRNA_3.1 | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Tf0010 | - | - | - | - | - | - | Ciclev10021038m | scaffold_3 | 1054257 | 1056078 | C_unshiu_00609:mRNA_18.1 | C_unshiu_00609 | 77883 | 79313 | Putative WRKY transcription factor 41 | AGI-05 | ||||||||||||
| Fb0329 | - | - | - | - | - | - | Ciclev10004180m | scaffold_9 | 29237838 | 29242883 | C_unshiu_00606:mRNA_2.1 | C_unshiu_00606 | 13693 | 18703 | Methyltransferase MT-A70 family protein isoform 1 | AGI-03 | 60.686 | |||||||||||
| Al0215 | OOthers | - | - | - | - | - | - | Ciclev10007304m | scaffold_1 | 21918726 | 21922966 | C_unshiu_00595:mRNA_18.1 | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
| Af1568 | - | - | - | - | - | - | C_unshiu_00591:mRNA_15.1 | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
| Cp0671 | AAvailable marker | - | - | - | - | O | O | Ciclev10009489m | scaffold_1 | 28353948 | 28356507 | C_unshiu_00590:mRNA_26.1 | C_unshiu_00590 | 165626 | 168046 | UPF0133 protein | AGI-01 | 36.113 | ||||||||||
| Tf0077 | O | - | - | - | - | - | SI135 | Ciclev10008135m | scaffold_1 | 28433972 | 28437921 | C_unshiu_00590:mRNA_15.1 | C_unshiu_00590 | 86430 | 90131 | WRKY | AGI-01 | 34.814 | ||||||||||
| Af1416 | - | - | - | - | - | - | Ciclev10029140m | scaffold_8 | 3738607 | 3741747 | C_unshiu_00589:mRNA_10.1 | C_unshiu_00589 | 131180 | 134227 | Embryo defective 1273, putative isoform 1 | AGI-08 | 68.834 | |||||||||||
| Ov0503 | AtAvailable marker | O | - | - | - | - | O | Ciclev10020582m | scaffold_3 | 28382218 | 28386683 | C_unshiu_00585:mRNA_5.1 | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | NAT-05 | 19.042 | ||||||||||
| Gn0056 | - | - | - | - | - | - | Ciclev10020582m | scaffold_3 | 28382218 | 28386683 | C_unshiu_00585:mRNA_5.1 | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | AGI-05 | 39.424 | |||||||||||
| Ov0027 | Ov0027.em | - | - | - | - | - | - | Ciclev10009797m | scaffold_1 | 8417158 | 8419377 | C_unshiu_00584:mRNA_9.1 | C_unshiu_00584 | 74089 | 76266 | 60S ribosomal protein L28 | AGI-03 | 51.749 | ||||||||||
| Cp1791 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10027428m | scaffold_7 | 11604464 | 11607028 | C_unshiu_00582:mRNA_4.1 | C_unshiu_00582 | 10067 | 11470 | NBS-LRR type disease resistance protein | AGI-02 | 12.969 | ||||||||||
| Tf0001.2 | AAvailable marker | O | O | O | - | O | O | Ciclev10020248m | scaffold_3 | 8647529 | 8652282 | C_unshiu_00580:mRNA_10.1 | C_unshiu_00580 | 75118 | 81473 | Transcription factor BIM1 | AGI-05 | 41.893 | ||||||||||
| Af1370 | - | - | - | - | - | - | Ciclev10009015m | scaffold_1 | 8822834 | 8826308 | C_unshiu_00579:mRNA_6.1 | C_unshiu_00579 | 46507 | 50108 | Plasma membrane | AGI-01 | 56.590 | |||||||||||
| Gmom29 | - | - | - | - | - | - | Ciclev10000654m | scaffold_5 | 12677414 | 12680761 | C_unshiu_00578:mRNA_7.1 | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
| Tf0081 | - | - | - | - | - | - | SI038,SI324 | Ciclev10021980m | scaffold_3 | 38214468 | 38216861 | C_unshiu_00575:mRNA_8.1 | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
| Fb0313 | - | - | - | - | - | - | Ciclev10002602m | scaffold_5 | 29803196 | 29804310 | C_unshiu_00570:mRNA_7.1 | C_unshiu_00570 | 69328 | 70168 | Mitochondrial import inner membrane translocase subunit tim23 | RP-07 | 9.871 | |||||||||||
| Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | C_unshiu_00564:mRNA_19.1 | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
| Ov0013 | OOthers | - | - | - | - | - | - | Ciclev10005251m | scaffold_9 | 18058387 | 18060752 | C_unshiu_00556:mRNA_14.1 | C_unshiu_00556 | 103101 | 105466 | Caffeic acid 3-O-methyltransferase | AGI-03 | 50.691 | KmG-032 | 18.852 | JtR-031 | 11.918 | RP-03 | 38.986 | ||||
| Ov0427 | - | - | - | - | - | - | Ciclev10009427m | scaffold_1 | 2156679 | 2158871 | C_unshiu_00553:mRNA_14.1 | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
| Wy0063 | Wy0063.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | AGI-01 | 33.445 | ||||||||||
| Wy0064 | Wy0064.em | - | - | - | - | - | - | Ciclev10021336m | scaffold_3 | 29395094 | 29402560 | C_unshiu_00549:mRNA_8.1 | C_unshiu_00549 | 83149 | 90542 | Splicing regulatory glutamine/lysine-rich protein 1 | ||||||||||||
| Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | Ciclev10019364m | scaffold_3 | 29351854 | 29354190 | C_unshiu_00549:mRNA_6.1 | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
| Tf0245 | - | - | - | - | - | - | SI021 | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | ||||||||||||
| Al0209 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10008628m | scaffold_1 | 18298599 | 18300295 | C_unshiu_00548:mRNA_21.1 | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | KmG-01 | 37.230 | JtR-01S | 88.382 | ||||||||
| Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | Ciclev10008900m | scaffold_1 | 4722889 | 4726339 | C_unshiu_00547:mRNA_9.1 | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
| Tf0309 | - | - | - | - | - | - | SI190 | Ciclev10020466m | scaffold_3 | 45314016 | 45316651 | C_unshiu_00546:mRNA_23.1 | C_unshiu_00546 | 158416 | 160829 | TLP domain class transcription factor | AGI-05 | 57.948 | ||||||||||
| Tf0184 | AAvailable marker | O | - | - | - | O | O | Ciclev10019968m | scaffold_3 | 45393857 | 45398298 | C_unshiu_00546:mRNA_8.1 | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
| Fb0995 | OOthers | O | - | - | - | - | - | SI026 | Ciclev10024677m | scaffold_7 | 1180019 | 1202408 | C_unshiu_00544:mRNA_10.1 | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
| Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | Ciclev10022215m | scaffold_3 | 13810497 | 13813004 | C_unshiu_00542:mRNA_3.1 | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
| Ov0312 | - | - | - | - | - | - | Ciclev10018858m | scaffold_3 | 1344192 | 1349935 | C_unshiu_00541:mRNA_19.1 | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
| Tf0212 | - | - | - | - | - | - | SI196 | Ciclev10030538m | scaffold_4 | 19816800 | 19825304 | C_unshiu_00535:mRNA_20.1 | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
| Lp0021 | AtAvailable marker | O | - | - | - | - | O | Ciclev10021502m | scaffold_3 | 1771668 | 1774647 | C_unshiu_00534:mRNA_8.2 | C_unshiu_00534 | 53508 | 55845 | Aquaporin | ||||||||||||
| Af1003 | O | - | - | - | - | - | Ciclev10001093m | scaffold_5 | 15605852 | 15610028 | C_unshiu_00533:mRNA_20.1 | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
| Tf0411 | OOthers | O | - | - | - | - | - | Ciclev10020263m | scaffold_3 | 38111191 | 38116265 | C_unshiu_00523:mRNA_15.1 | C_unshiu_00523 | 100297 | 104594 | Putative transcription factor PosF21 | AGI-05 | 48.613 | ||||||||||
| Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | Ciclev10019826m | scaffold_3 | 6502231 | 6504139 | C_unshiu_00521:mRNA_1.1 | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
| Af1396 | - | - | - | - | - | - | Ciclev10022545m | scaffold_3 | 4920662 | 4923421 | C_unshiu_00520:mRNA_16.2 | C_unshiu_00520 | 166824 | 167867 | Ribosomal protein L19 family protein | AGI-05 | 28.041 | |||||||||||
| Af1043 | - | - | - | - | - | - | Ciclev10026060m | scaffold_7 | 20049936 | 20052008 | C_unshiu_00519:mRNA_19.1 | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
| Tf0328 | - | - | - | - | - | - | SI039,SI180 | Ciclev10021606m | scaffold_3 | 2530708 | 2533942 | C_unshiu_00509:mRNA_27.1 | C_unshiu_00509 | 178211 | 181426 | Transcription factor bHLH79 | ||||||||||||
| Af1052 | O | - | - | - | - | - | Ciclev10004444m | scaffold_9 | 12808154 | 12820311 | C_unshiu_00508:mRNA_9.1 | C_unshiu_00508 | 40385 | 58179 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
| Tf0012 | AAvailable marker | - | - | - | - | O | O | Ciclev10018673m | scaffold_3 | 37601493 | 37607586 | C_unshiu_00502:mRNA_21.1 | C_unshiu_00502 | 155419 | 162660 | Protein NLP8 | AGI-05 | 47.173 | ||||||||||
| Cp0532 | - | - | - | - | - | - | Ciclev10020319m | scaffold_3 | 30393811 | 30398972 | C_unshiu_00501:mRNA_15.1 | C_unshiu_00501 | 133280 | 137847 | Solanesyl diphosphate synthase | AGI-05 | 42.168 | |||||||||||
| Tf0029 | - | - | - | - | - | - | Ciclev10027901m | scaffold_8 | 21887372 | 21893128 | C_unshiu_00500:mRNA_16.1 | C_unshiu_00500 | 147319 | 151840 | Auxin response factor | AGI-08 | 27.318 | |||||||||||
| Bf0411 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028317m | scaffold_8 | 21869065 | 21874083 | C_unshiu_00500:mRNA_13.1 | C_unshiu_00500 | 128482 | 133656 | Sulfotransferase | ||||||||||||
| Gn0042 | - | - | - | - | - | - | Ciclev10009742m | scaffold_1 | 25370176 | 25371445 | C_unshiu_00498:mRNA_21.1 | C_unshiu_00498 | 140388 | 142383 | Deficiens | JtR-08 | 6.490 | |||||||||||
| Tf0172 | O | - | - | - | - | - | Ciclev10026400m | scaffold_7 | 9976621 | 9980176 | C_unshiu_00496:mRNA_5.1 | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
| Lp0220 | O | - | - | - | - | - | Ciclev10000749m | scaffold_5 | 39221210 | 39227401 | C_unshiu_00495:mRNA_21.1 | C_unshiu_00495 | 125230 | 136174 | Hypothetical protein | AGI-07 | 14.968 | |||||||||||
| Ks9003 | AAvailable marker | - | - | - | - | - | O | Ciclev10014733m | scaffold_2 | 8436110 | 8440408 | C_unshiu_00494:mRNA_1.1 | C_unshiu_00494 | 7014 | 11146 | Ascorbate oxidase | KmG-09 | 19.560 | JtR-09S | 5.836 | ||||||||
| Vs0004 | - | - | - | - | - | - | Ciclev10021761m | scaffold_3 | 2078691 | 2083111 | C_unshiu_00490:mRNA_23.1 | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
| Tf0317 | - | - | - | - | - | - | SI145 | Ciclev10021941m | scaffold_3 | 2106810 | 2109266 | C_unshiu_00490:mRNA_19.1 | C_unshiu_00490 | 159122 | 161521 | Transcription factor bHLH47 | ||||||||||||
| Tf0221 | - | - | - | - | - | - | SI057,SI225 | Ciclev10025996m | scaffold_7 | 490750 | 492882 | C_unshiu_00488:mRNA_7.1 | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
| Bf0026 | - | - | - | - | - | - | Ciclev10008765m | scaffold_1 | 21082902 | 21086082 | C_unshiu_00487:mRNA_12.1 | C_unshiu_00487 | 113166 | 115416 | Thiazole biosynthetic enzyme | AGI-01 | 43.164 | RP-01 | 56.137 | |||||||||
| Bf0115 | O | - | - | - | - | - | SI054,SI295 | Ciclev10029066m | scaffold_8 | 6317205 | 6322458 | C_unshiu_00484:mRNA_11.3 | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
| Cp0237 | - | - | - | - | - | - | Ciclev10033007m | scaffold_4 | 10652381 | 10655082 | C_unshiu_00483:mRNA_11.1 | C_unshiu_00483 | 100177 | 109515 | Protein LSD1 | AGI-07 | 35.506 | |||||||||||
| Tf0241 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10027798m | scaffold_8 | 22106872 | 22114471 | C_unshiu_00481:mRNA_18.1 | C_unshiu_00481 | 121975 | 128680 | Zinc finger CCCH domain-containing protein 24 | AGI-08 | 27.618 | ||||||||||
| Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | Ciclev10030998m | scaffold_4 | 17143350 | 17147918 | C_unshiu_00478:mRNA_2.1 | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
| Cp0026 | - | - | - | - | - | - | Ciclev10014741m | scaffold_2 | 24938686 | 24943643 | C_unshiu_00472:mRNA_8.1 | C_unshiu_00472 | 85278 | 89618 | Putative ADP-glucose pyrophosphorylase small subunit | AGI-06 | 72.449 | |||||||||||
| Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10025343m | scaffold_7 | 19024295 | 19026021 | C_unshiu_00468:mRNA_22.1 | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
| Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | Ciclev10014804m | scaffold_2 | 14143537 | 14146003 | C_unshiu_00466:mRNA_1.1 | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
| Gn0002 | - | - | - | - | - | - | Ciclev10032697m | scaffold_4 | 3335945 | 3338632 | C_unshiu_00465:mRNA_12.1 | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
| Cp1279 | AAvailable marker | - | - | - | - | O | O | Ciclev10031414m | scaffold_4 | 12900777 | 12903692 | C_unshiu_00461:mRNA_17.1 | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
| Wy0039 | AAvailable marker | - | - | - | - | O | O | Ciclev10028965m | scaffold_8 | 18824262 | 18825514 | C_unshiu_00459:mRNA_4.1 | C_unshiu_00459 | 34475 | 34918 | Hypothetical protein | AGI-08 | 45.276 | JtR-08 | 16.276 | ||||||||
| If0220 | AAvailable marker | - | - | - | - | - | O | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_15.1 | C_unshiu_00457 | 99488 | 99913 | Hypothetical protein | ||||||||||||
| Cp0249 | - | - | - | - | - | - | Ciclev10001084m | scaffold_5 | 39480647 | 39484776 | C_unshiu_00457:mRNA_14.1 | C_unshiu_00457 | 96540 | 99356 | Acetyltransferase component of pyruvate dehydrogenase complex | AGI-09 | 41.336 | |||||||||||
| Lp0135 | - | - | - | - | - | - | Ciclev10002870m | scaffold_5 | 39412819 | 39414334 | C_unshiu_00457:mRNA_3.1 | C_unshiu_00457 | 27521 | 28982 | Xylem serinease 1-like protein | JtR-05 | 41.854 | |||||||||||
| Af1100 | - | - | - | - | - | - | Ciclev10026703m | scaffold_7 | 10853487 | 10855215 | C_unshiu_00451:mRNA_17.1 | C_unshiu_00451 | 120744 | 122474 | Ran BP2/NZF zinc finger-like superfamily protein isoform 1 | AGI-02 | 13.326 | |||||||||||
| Tf0059 | - | - | - | - | - | - | SI101 | Ciclev10007297m | scaffold_1 | 12883722 | 12897805 | C_unshiu_00450:mRNA_3.1 | C_unshiu_00450 | 36956 | 58462 | AGC family Serine/Threonine kinase family protein | AGI-01 | 56.416 | ||||||||||
| Tf0028 | - | - | - | - | - | - | SI377 | Ciclev10022572m | scaffold_3 | 19780711 | 19782241 | C_unshiu_00443:mRNA_20.1 | C_unshiu_00443 | 195567 | 202424 | MADS-box transcription factor | ||||||||||||
| Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | Ciclev10022558m | scaffold_3 | 6409311 | 6411254 | C_unshiu_00443:mRNA_7.1 | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
| Tf0307 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10009286m | scaffold_1 | 25395688 | 25397278 | C_unshiu_00442:mRNA_24.1 | C_unshiu_00442 | 209015 | 209831 | Myb domain protein 5 | AGI-01 | 23.266 | ||||||||||
| Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
| Ov0302 | Ov0301.2 | - | - | - | - | - | - | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
| Tf0017 | - | - | - | - | - | - | SI285 | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | AGI-05 | 28.617 | ||||||||||
| Ov0006 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10021068m | scaffold_3 | 5360113 | 5362918 | C_unshiu_00442:mRNA_18.1 | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 25.587 | JtR-08 | 27.669 | ||||||||
| Wy0018 | AAvailable marker | - | - | - | - | O | O | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | AGI-05 | 29.033 | KmG-05S | 20.128 | JtR-05 | 19.008 | ||||||
| Tf0301 | - | - | - | - | - | - | SI182 | Ciclev10021374m | scaffold_3 | 5318874 | 5321054 | C_unshiu_00442:mRNA_14.1 | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | ||||||||||||
| Ov0520 | OOthers | O | - | - | - | - | - | Ciclev10029053m | scaffold_8 | 4712393 | 4713689 | C_unshiu_00438:mRNA_3.1 | C_unshiu_00438 | 34343 | 35619 | BURP domain-containing protein | AGI-08 | 33.144 | JtR-08 | 26.748 | ||||||||
| Fb0233 | O | - | - | - | - | - | SI025,SI079,SI169 | Ciclev10025557m | scaffold_7 | 6535522 | 6540965 | C_unshiu_00437:mRNA_15.1 | C_unshiu_00437 | 131524 | 136642 | WD-40 repeat-containing protein MSI4 | AGI-02 | 47.382 | ||||||||||
| Ov0512 | OOthers | O | - | - | - | - | - | Ciclev10006241m | scaffold_9 | 27198508 | 27199642 | C_unshiu_00433:mRNA_19.1 | C_unshiu_00433 | 116730 | 118286 | Small heat shock protein | AGI-03 | 40.361 | KmG-032 | 25.743 | JtR-031 | NAT-03 | ||||||
| Cp1627 | AAvailable marker | - | - | - | - | O | O | Ciclev10022024m | scaffold_3 | 13309398 | 13310636 | C_unshiu_00431:mRNA_6.1 | C_unshiu_00431 | 44507 | 45451 | Chloroplast small heat shock protein | AGI-05 | 41.272 | ||||||||||
| Tf0360 | - | - | - | - | - | - | SI112 | Ciclev10000627m | scaffold_5 | 38669123 | 38672110 | C_unshiu_00430:mRNA_12.1 | C_unshiu_00430 | 98615 | 101120 | Trihelix transcription factor GT-2 | AGI-09 | 43.140 | ||||||||||
| Bf0182 | O | - | - | - | - | - | Ciclev10009454m | scaffold_1 | 17831333 | 17834889 | C_unshiu_00429:mRNA_12.1 | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
| Bf0138 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10019462m | scaffold_3 | 6072460 | 6076187 | C_unshiu_00428:mRNA_16.2 | C_unshiu_00428 | 119232 | 121021 | Oxygen-evolving enhancer protein 2, chloroplastic | NAT-05 | 14.555 | RP-05 | 24.995 | ||||||||
| Af1036 | O | - | - | - | - | - | Ciclev10021080m | scaffold_3 | 7016831 | 7019863 | C_unshiu_00425:mRNA_11.1 | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
| Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | Ciclev10021287m | scaffold_3 | 7047024 | 7049430 | C_unshiu_00425:mRNA_7.1 | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
| Gn0058 | - | - | - | - | - | - | Ciclev10029531m | scaffold_8 | 11297754 | 11299510 | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-08 | 59.107 | |||||||||||
| Al0001 | - | - | - | - | - | - | C_unshiu_00424:mRNA_23.1 | C_unshiu_00424 | 213541 | 217268 | Hypothetical protein | AGI-03 | 62.228 | JtR-031 | 17.616 | |||||||||||||
| Tf0199 | - | - | - | - | - | - | SI023,SI157 | Ciclev10000697m | scaffold_5 | 30994812 | 30999834 | C_unshiu_00422:mRNA_12.1 | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
| Bf0195 | - | - | - | - | - | - | SI369 | Ciclev10000780m | scaffold_5 | 31069237 | 31075092 | C_unshiu_00422:mRNA_5.1 | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
| Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
| Mf0090 | AAvailable marker | - | O | - | - | O | O | Ciclev10025866m | scaffold_7 | 17201236 | 17204282 | C_unshiu_00421:mRNA_21.2 | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.869 | KmG-02 | 11.182 | JtR-02 | 3.182 | RP-02 | 8.191 | ||||
| Ov0311 | - | - | - | - | - | - | Ciclev10022001m | scaffold_3 | 18341166 | 18342395 | C_unshiu_00417:mRNA_9.1 | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
| Cp1585 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | ||||||||||||
| Tf0083 | - | - | - | - | - | - | SI129 | Ciclev10021651m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Tf0420 | AAvailable marker | O | O | O | - | O | O | Ciclev10022018m | scaffold_3 | 6602994 | 6605239 | C_unshiu_00412:mRNA_10.1 | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
| Tf0351 | - | - | - | - | - | - | SI122 | Ciclev10021622m | scaffold_3 | 43472094 | 43473220 | C_unshiu_00411:mRNA_17.1 | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
| Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10022720m | scaffold_3 | 43447942 | 43449920 | C_unshiu_00411:mRNA_15.1 | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
| Tf0256 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021699m | scaffold_3 | 43420187 | 43422432 | C_unshiu_00411:mRNA_13.1 | C_unshiu_00411 | 116444 | 118424 | Myb-related protein Myb4 | AGI-05 | 52.314 | ||||||||||
| Af1091 | O | - | - | - | - | - | Ciclev10021043m | scaffold_3 | 43316046 | 43317909 | C_unshiu_00411:mRNA_2.1 | C_unshiu_00411 | 11510 | 13352 | Arabinose 5-phosphate isomerase | AGI-05 | 52.655 | |||||||||||
| Cp0973 | OOthers | - | - | - | - | - | - | Ciclev10013409m | scaffold_6 | 8193393 | 8195764 | C_unshiu_00407:mRNA_4.1 | C_unshiu_00407 | 55425 | 57717 | Thioredoxin F-type, chloroplastic | ||||||||||||
| Bf0218 | O | - | - | - | - | - | SI232 | Ciclev10000452m | scaffold_5 | 36036990 | 36048487 | C_unshiu_00406:mRNA_20.1 | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
| Tf0203 | - | - | - | - | - | - | SI121 | Ciclev10014039m | scaffold_2 | 10459593 | 10472483 | C_unshiu_00403:mRNA_13.1 | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
| Tf0058 | - | - | - | - | - | - | SI257 | Ciclev10009065m | scaffold_1 | 20885102 | 20889283 | C_unshiu_00395:mRNA_8.2 | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
| Al0419 | OOthers | O | - | - | - | - | - | Ciclev10005894m | scaffold_9 | 2452853 | 2455181 | C_unshiu_00394:mRNA_25.1 | C_unshiu_00394 | 150531 | 152208 | Hypothetical protein | AGI-03 | 17.378 | KmG-09 | 9.593 | JtR-09S | 7.976 | ||||||
| Fb0827 | O | - | - | - | - | - | SI215,SI301 | Ciclev10004432m | scaffold_9 | 2353442 | 2357780 | C_unshiu_00394:mRNA_9.1 | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
| Cp1031 | AAvailable marker | - | O | - | - | O | O | Ciclev10005224m | scaffold_9 | 2324313 | 2328666 | C_unshiu_00394:mRNA_4.1 | C_unshiu_00394 | 11970 | 16480 | Putative E3 ubiquitin-protein ligase MARCH10 | AGI-03 | 18.610 | ||||||||||
| Bf0003 | ULess informative for main cultivars | O | - | - | - | - | - | SI354 | Ciclev10011720m | scaffold_6 | 16246773 | 16250769 | C_unshiu_00390:mRNA_6.1 | C_unshiu_00390 | 75799 | 78947 | Vacuolar cation/proton exchanger 3 | RP-04 | 10.253 | |||||||||
| Tf0240 | - | - | - | - | - | - | SI184 | Ciclev10018505m | scaffold_3 | 42718991 | 42733040 | C_unshiu_00386:mRNA_19.1 | C_unshiu_00386 | 164396 | 178993 | Myosin 2 | ||||||||||||
| Wy0012 | O | - | - | - | - | O | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | KmG-032 | 11.250 | JtR-031 | 4.898 | NAT-03 | 11.970 | |||||||
| Af1414 | - | - | - | - | - | - | Ciclev10004385m | scaffold_9 | 4888531 | 4892972 | C_unshiu_00386:mRNA_17.1 | C_unshiu_00386 | 142436 | 145911 | Ethylene receptor | AGI-03 | 50.895 | |||||||||||
| Vt0032 | O | - | - | - | - | - | SI024 | Ciclev10024737m | scaffold_7 | 17901487 | 17905433 | C_unshiu_00382:mRNA_15.1 | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
| Bf0019 | - | - | - | - | - | - | Ciclev10028586m | scaffold_8 | 232123 | 235806 | C_unshiu_00376:mRNA_8.1 | C_unshiu_00376 | 72474 | 76027 | Putative serine/threonine-protein kinase Cx32 | RP-04 | ||||||||||||
| Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | C_unshiu_00375:mRNA_10.1 | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
| Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | Ciclev10028241m | scaffold_8 | 23456630 | 23459052 | C_unshiu_00375:mRNA_4.1 | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
| Gn0097 | - | - | - | - | - | - | Ciclev10005133m | scaffold_9 | 10246239 | 10248409 | C_unshiu_00372:mRNA_8.1 | C_unshiu_00372 | 77039 | 79209 | Naringenin-chalcone synthase | AGI-02 | ||||||||||||
| Tf0454 | AAvailable marker | O | - | - | - | O | O | Ciclev10027306m | scaffold_7 | 16108723 | 16113463 | C_unshiu_00371:mRNA_10.1 | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
| Al0239 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10026364m | scaffold_7 | 16185818 | 16187223 | C_unshiu_00371:mRNA_7.1 | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | ||||||||||||
| Af3023 | - | - | - | - | - | - | Ciclev10026364m | scaffold_7 | 16185818 | 16187223 | C_unshiu_00371:mRNA_7.1 | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | AGI-02 | 21.337 | |||||||||||
| Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | Ciclev10000615m | scaffold_5 | 43060442 | 43066562 | C_unshiu_00370:mRNA_39.2 | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
| Fb0326 | O | - | - | - | - | - | Ciclev10002506m | scaffold_5 | 43051579 | 43053394 | C_unshiu_00370:mRNA_38.1 | C_unshiu_00370 | 207050 | 209216 | Cell division control protein 2 | AGI-09 | 8.959 | RP-09 | 78.225 | |||||||||
| Af1060 | O | - | - | - | - | - | Ciclev10000400m | scaffold_5 | 42918371 | 42923480 | C_unshiu_00370:mRNA_16.1 | C_unshiu_00370 | 75283 | 79772 | Tonoplast monosaccharide transporter 2 | AGI-09 | 23.647 | |||||||||||
| Al0234 | OOthers | - | - | - | - | - | - | Ciclev10005909m | scaffold_9 | 1372972 | 1374927 | C_unshiu_00369:mRNA_20.1 | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
| Gn0052 | - | - | - | - | - | - | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | KmG-032 | 15.450 | JtR-031 | 12.830 | |||||||||
| Wy0032 | OOthers | O | - | - | - | O | O | Ciclev10005365m | scaffold_9 | 10357084 | 10359834 | C_unshiu_00367:mRNA_10.1 | C_unshiu_00367 | 100255 | 102997 | Male sterility MS5 family protein | AGI-03 | 46.121 | KmG-032 | 14.572 | JtR-031 | 12.840 | ||||||
| Af1415 | - | - | - | - | - | - | Ciclev10005717m | scaffold_9 | 2603134 | 2605405 | C_unshiu_00366:mRNA_20.1 | C_unshiu_00366 | 130993 | 132913 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-03 | 16.667 | |||||||||||
| Al0206 | AAvailable marker | - | - | - | - | O | O | Ciclev10032727m | scaffold_4 | 12309480 | 12311438 | C_unshiu_00365:mRNA_26.1 | C_unshiu_00365 | 192643 | 194502 | NADPH-dependent codeinone reductase-like protein | AGI-07 | 38.565 | JtR-07 | 52.611 | RP-07 | 29.935 | ||||||
| Cp0603 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10028998m | scaffold_8 | 2349655 | 2354496 | C_unshiu_00363:mRNA_34.1 | C_unshiu_00363 | 217631 | 222409 | Hop-interacting protein THI043 | AGI-08 | 75.684 | ||||||||||
| Fb0246 | - | - | - | - | - | - | Ciclev10029680m | scaffold_8 | 2403492 | 2406922 | C_unshiu_00363:mRNA_27.1 | C_unshiu_00363 | 170901 | 174318 | Hypothetical protein | AGI-08 | 80.078 | |||||||||||
| Gn0033 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10028247m | scaffold_8 | 2561845 | 2563605 | C_unshiu_00363:mRNA_2.1 | C_unshiu_00363 | 14663 | 16198 | Limonoid UDP-glucosyltransferase-like protein | AGI-08 | 73.527 | KmG-08 | 86.664 | NAT-082 | 86.620 | ||||||
| Al0517 | AAvailable marker | - | - | - | - | O | O | Ciclev10028293m | scaffold_8 | 2572439 | 2574295 | C_unshiu_00363:mRNA_1.1 | C_unshiu_00363 | 5892 | 7583 | Limonoid glucosyltransferase | AGI-08 | 74.016 | JtR-08 | 15.435 | ||||||||
| Tf0065 | - | - | - | - | - | - | SI142 | Ciclev10030696m | scaffold_4 | 13945795 | 13951313 | C_unshiu_00357:mRNA_3.1 | C_unshiu_00357 | 35189 | 39739 | Auxin response factor | AGI-07 | 41.876 | ||||||||||
| Gn0101 | - | - | - | - | - | - | Ciclev10025706m | scaffold_7 | 662802 | 667420 | C_unshiu_00353:mRNA_30.1 | C_unshiu_00353 | 203269 | 207136 | Protein MID1-COMPLEMENTING ACTIVITY 1 | AGI-02 | 77.881 | |||||||||||
| Af1031 | O | - | - | - | - | - | Ciclev10025711m | scaffold_7 | 718488 | 722516 | C_unshiu_00353:mRNA_22.1 | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
| Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | Ciclev10026412m | scaffold_7 | 815904 | 817239 | C_unshiu_00353:mRNA_13.1 | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
| Bf0033 | - | - | - | - | - | - | SI356,SI379 | Ciclev10007537m | scaffold_1 | 27204998 | 27211059 | C_unshiu_00347:mRNA_22.1 | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
| Af1223 | - | - | - | - | - | - | Ciclev10009839m | scaffold_1 | 27111412 | 27114276 | C_unshiu_00347:mRNA_8.1 | C_unshiu_00347 | 66555 | 79401 | Flavin-binding kelch domain F box protein | AGI-09 | 97.668 | |||||||||||
| Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | C_unshiu_00343:mRNA_25.1 | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
| Tf0342 | - | - | - | - | - | - | SI151 | Ciclev10019088m | scaffold_3 | 1649410 | 1655963 | C_unshiu_00343:mRNA_23.1 | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
| Fb0322 | O | - | - | - | - | - | Ciclev10030532m | scaffold_4 | 3249710 | 3254808 | C_unshiu_00342:mRNA_35.1 | C_unshiu_00342 | 217525 | 222590 | Splicing factor 3B subunit 3 | AGI-07 | 14.580 | JtR-07 | 64.384 | RP-07 | 47.636 | |||||||
| Ov0116 | - | - | - | - | - | - | Ciclev10032931m | scaffold_4 | 3193875 | 3196468 | C_unshiu_00342:mRNA_22.1 | C_unshiu_00342 | 154980 | 164222 | Hypothetical protein | KmG-02 | 53.208 | JtR-02 | 27.051 | RP-02.2 | 5.192 | |||||||
| Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | Ciclev10007563m | scaffold_1 | 24898769 | 24905716 | C_unshiu_00341:mRNA_22.1 | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
| Gn0011 | - | - | - | - | - | - | Ciclev10007488m | scaffold_1 | 24814539 | 24819264 | C_unshiu_00341:mRNA_12.1 | C_unshiu_00341 | 85182 | 89905 | Sucrose synthase | KmG-01 | 21.459 | |||||||||||
| Tf0230 | - | - | - | - | - | - | SI140 | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
| Tf0406 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10008206m | scaffold_1 | 23463843 | 23470911 | C_unshiu_00338:mRNA_22.1 | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | AGI-01 | 28.515 | ||||||||||
| Fb0237 | - | - | - | - | - | - | Ciclev10007227m | scaffold_1 | 23487200 | 23497316 | C_unshiu_00338:mRNA_20.1 | C_unshiu_00338 | 134033 | 144369 | Hypothetical protein | AGI-01 | 28.325 | |||||||||||
| Fb0104 | OOthers | O | - | - | - | - | - | Ciclev10016358m | scaffold_2 | 35758546 | 35760859 | C_unshiu_00337:mRNA_24.1 | C_unshiu_00337 | 135198 | 136991 | Tropinone reductase like | AGI-06 | 16.857 | RP-06.2 | 16.271 | ||||||||
| Gn0005 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10015934m | scaffold_2 | 35693249 | 35696515 | C_unshiu_00337:mRNA_13.1 | C_unshiu_00337 | 68883 | 71725 | Fibrillin | AGI-06 | 16.857 | KmG-06 | 63.840 | NAT-06S | 59.976 | ||||||
| Cp0635 | AAvailable marker | O | - | O | - | O | O | C_unshiu_00337:mRNA_4.1 | C_unshiu_00337 | 11596 | 15307 | 50S ribosomal protein L4 | AGI-06 | 17.029 | ||||||||||||||
| Vt0001 | AAvailable marker | - | - | - | - | O | O | Ciclev10014290m | scaffold_2 | 35624935 | 35628855 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
| Vt0011 | AAvailable marker | - | - | - | - | O | O | Ciclev10021162m | scaffold_3 | 12984411 | 12986574 | C_unshiu_00337:mRNA_2.1 | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
| Af1068 | O | - | - | - | - | - | Ciclev10021732m | scaffold_3 | 40110008 | 40113420 | C_unshiu_00335:mRNA_13.1 | C_unshiu_00335 | 99790 | 103133 | Protein vip1 | AGI-05 | 48.750 | |||||||||||
| Af1685 | - | - | - | - | - | - | Ciclev10023782m | scaffold_3 | 40086985 | 40089114 | C_unshiu_00335:mRNA_9.1 | C_unshiu_00335 | 76164 | 77436 | Hypothetical protein | AGI-05 | 56.481 | |||||||||||
| Lp0103 | OOthers | - | - | - | - | - | - | Ciclev10012274m | scaffold_6 | 16393309 | 16395378 | C_unshiu_00332:mRNA_15.1 | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
| If0011 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10013189m | scaffold_6 | 20522569 | 20523527 | C_unshiu_00331:mRNA_8.1 | C_unshiu_00331 | 122906 | 127189 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 | ||||||||||||
| Lp0208 | - | - | - | - | - | - | Ciclev10018482m | scaffold_3 | 45704361 | 45713084 | C_unshiu_00326:mRNA_24.1 | C_unshiu_00326 | 146528 | 154002 | ABC transporter C family member 3 | AGI-03 | 15.136 | NAT-03 | 28.397 | |||||||||
| Cp1427 | AAvailable marker | - | - | - | - | O | O | Ciclev10021746m | scaffold_3 | 45576863 | 45579197 | C_unshiu_00326:mRNA_5.1 | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
| If0203 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10022993m | scaffold_3 | 42229224 | 42231230 | C_unshiu_00322:mRNA_21.1 | C_unshiu_00322 | 121122 | 123131 | Small ubiquitin-related modifier | AGI-05 | 51.293 | KmG-05S | 67.257 | JtR-05 | 43.446 | ||||||
| Ov0121 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | Ciclev10028359m | scaffold_8 | 20352232 | 20354410 | C_unshiu_00320:mRNA_8.1 | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | NAT-081 | |||||||||||
| Ov0125 | AAvailable marker | - | - | - | - | O | O | Ciclev10028359m | scaffold_8 | 20352232 | 20354410 | C_unshiu_00320:mRNA_8.1 | C_unshiu_00320 | 86929 | 88531 | Arogenate dehydratase | AGI-08 | 41.398 | ||||||||||
| Al0324 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10029315m | scaffold_8 | 20424287 | 20425903 | C_unshiu_00320:mRNA_1.2 | C_unshiu_00320 | 12758 | 14314 | Hypothetical protein | AGI-08 | 41.127 | NAT-082 | 31.019 | RP-08 | 17.081 | ||||||
| Af2596 | - | - | - | - | - | - | Ciclev10002840m | scaffold_5 | 38154975 | 38155769 | C_unshiu_00319:mRNA_29.1 | C_unshiu_00319 | 189073 | 189599 | Basic blue protein | AGI-09 | 57.830 | |||||||||||
| Bf0024 | O | - | - | - | - | - | SI093 | Ciclev10002093m | scaffold_5 | 38134662 | 38138860 | C_unshiu_00319:mRNA_24.1 | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
| Ov0316 | - | - | - | - | - | - | Ciclev10020995m | scaffold_3 | 3963024 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | JtR-05 | 31.749 | |||||||||||
| Af1633 | - | - | - | - | - | - | Ciclev10020304m | scaffold_3 | 3963024 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-07 | 67.201 | |||||||||||
| Tf0051 | - | - | - | - | - | - | SI027,SI214 | Ciclev10021952m | scaffold_3 | 3964036 | 3966516 | C_unshiu_00318:mRNA_19.1 | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-05 | 25.590 | ||||||||||
| If0219 | MDisagree by Marco analysis | - | - | - | - | - | - | C_unshiu_00318:mRNA_17.1 | C_unshiu_00318 | 110550 | 117056 | Esterase | JtR-05 | 13.922 | NAT-05 | 28.283 | ||||||||||||
| Cp2229 | AAvailable marker | - | - | - | - | O | O | Ciclev10022058m | scaffold_3 | 4117485 | 4120274 | C_unshiu_00318:mRNA_6.1 | C_unshiu_00318 | 44376 | 47085 | Nucleoside diphosphate kinase | AGI-05 | 27.135 | ||||||||||
| Al0228 | - | - | - | - | - | - | Ciclev10009018m | scaffold_1 | 26206063 | 26208427 | C_unshiu_00315:mRNA_25.1 | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
| Tf0026 | O | - | - | - | - | - | SI111,SI288 | Ciclev10025369m | scaffold_7 | 285299 | 292550 | C_unshiu_00312:mRNA_28.1 | C_unshiu_00312 | 151229 | 158232 | Ubiquilin | AGI-02 | 78.531 | ||||||||||
| Al0525 | OOthers | O | - | - | - | - | - | Ciclev10026706m | scaffold_7 | 252320 | 254023 | C_unshiu_00312:mRNA_20.2 | C_unshiu_00312 | 114652 | 116351 | High mobility group (HMG)-box protein | AGI-01 | 38.939 | KmG-01 | 41.081 | ||||||||
| Al0619 | - | - | - | - | - | - | Ciclev10005142m | scaffold_9 | 2234066 | 2238313 | C_unshiu_00311:mRNA_12.1 | C_unshiu_00311 | 55933 | 60057 | TLP domain class transcription factor | AGI-01 | 57.863 | KmG-01 | 39.698 | |||||||||
| Af1498 | - | - | - | - | - | - | Ciclev10006723m | scaffold_9 | 6766349 | 6768025 | C_unshiu_00307:mRNA_26.2 | C_unshiu_00307 | 212314 | 218407 | Heterogeneous nuclear ribonucleoprotein 1 | AGI-03 | 46.274 | |||||||||||
| Bf0031 | O | - | - | - | - | - | Ciclev10031547m | scaffold_4 | 4077557 | 4083819 | C_unshiu_00306:mRNA_12.1 | C_unshiu_00306 | 51707 | 57589 | Chorismate synthase | AGI-07 | 32.590 | RP-07 | 19.092 | |||||||||
| Cp0781 | AAvailable marker | - | - | - | - | O | O | Ciclev10021469m | scaffold_3 | 41043663 | 41046480 | C_unshiu_00305:mRNA_28.1 | C_unshiu_00305 | 251599 | 254198 | Thioredoxin-like 7 family protein | AGI-05 | 50.294 | ||||||||||
| Al0029 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | C_unshiu_00305:mRNA_10.1 | C_unshiu_00305 | 69938 | 73026 | Basic helix-loop-helix transcription factor | AGI-01 | 37.357 | JtR-01S | 50.000 | ||||||||||||
| Fb0223 | - | - | - | - | - | - | SI240 | C_unshiu_00303:mRNA_13.1 | C_unshiu_00303 | 108935 | 110191 | E3 ubiquitin-protein ligase ATL6 | RP-08 | 15.967 | ||||||||||||||
| Cp1738 | AAvailable marker | - | - | - | - | - | O | SI237,SI296 | Ciclev10025941m | scaffold_7 | 5388458 | 5389981 | C_unshiu_00303:mRNA_12.1 | C_unshiu_00303 | 100918 | 102276 | Putative clathrin assembly protein | |||||||||||
| Tf0280 | - | - | - | - | - | - | SI158,SI200 | Ciclev10025566m | scaffold_7 | 3429964 | 3433239 | C_unshiu_00301:mRNA_24.3 | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
| Af1379 | - | - | - | - | - | - | Ciclev10026357m | scaffold_7 | 3456105 | 3460607 | C_unshiu_00301:mRNA_21.2 | C_unshiu_00301 | 134429 | 138770 | CBS domain-containing protein CBSX1, chloroplastic | AGI-02 | 68.467 | |||||||||||
| Bf0205 | O | - | - | - | - | - | SI236 | Ciclev10025925m | scaffold_7 | 3541924 | 3543863 | C_unshiu_00301:mRNA_11.1 | C_unshiu_00301 | 55570 | 57462 | WRKY | ||||||||||||
| Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | Ciclev10004730m | scaffold_9 | 22728310 | 22730086 | C_unshiu_00295:mRNA_17.1 | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
| Bf0413 | - | - | - | - | - | - | C_unshiu_00293:mRNA_16.1 | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
| Bf0125 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | NAT-03 | 8.920 | RP-03 | 31.431 | |||||||||
| Tf0147 | - | - | - | - | - | - | Ciclev10001956m | scaffold_5 | 15764937 | 15766976 | C_unshiu_00293:mRNA_8.1 | C_unshiu_00293 | 104196 | 105925 | NAC transcription factor | AGI-02 | 22.436 | |||||||||||
| Wy0035 | ULess informative for main cultivars | O | - | - | - | - | - | Ciclev10014857m | scaffold_2 | 31148849 | 31150616 | C_unshiu_00292:mRNA_13.1 | C_unshiu_00292 | 110620 | 112650 | FAD-binding Berberine family protein | AGI-06 | 36.863 | ||||||||||
| Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10024860m | scaffold_7 | 8603450 | 8610239 | C_unshiu_00290:mRNA_28.1 | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
| Bf0142 | O | - | - | - | - | - | Ciclev10024891m | scaffold_7 | 8508837 | 8516759 | C_unshiu_00290:mRNA_16.1 | C_unshiu_00290 | 151884 | 158772 | Class III homeodomain leucine zipper protein | AGI-02 | 5.104 | |||||||||||
| Af0004 | O | - | - | - | - | - | Ciclev10025125m | scaffold_7 | 8447414 | 8453714 | C_unshiu_00290:mRNA_10.1 | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
| Tf0067 | OOthers | O | - | - | - | - | - | SI033,SI187 | Ciclev10025950m | scaffold_7 | 8438702 | 8442381 | C_unshiu_00290:mRNA_9.1 | C_unshiu_00290 | 74194 | 77624 | Transcription factor | AGI-02 | 5.104 | |||||||||
| Cp2262 | AAvailable marker | - | - | - | - | - | O | Ciclev10026121m | scaffold_7 | 1870933 | 1874304 | C_unshiu_00289:mRNA_20.1 | C_unshiu_00289 | 113542 | 116894 | Galactose mutarotase-like superfamily protein | ||||||||||||
| Al0212 | O | - | - | - | - | - | Ciclev10026128m | scaffold_7 | 5258045 | 5259521 | C_unshiu_00288:mRNA_19.1 | C_unshiu_00288 | 142758 | 144183 | Mitochondrial uncoupling protein 3 | KmG-02 | 43.821 | JtR-02 | 30.507 | RP-08 | ||||||||
| Fb0275 | O | - | - | - | - | - | Ciclev10008562m | scaffold_1 | 15883118 | 15887517 | C_unshiu_00288:mRNA_9.1 | C_unshiu_00288 | 55910 | 60461 | Malate dehydrogenase | AGI-01 | 55.687 | |||||||||||
| Tf0315 | AAvailable marker | O | - | - | - | O | O | Ciclev10012089m | scaffold_6 | 14087181 | 14090115 | C_unshiu_00287:mRNA_20.1 | C_unshiu_00287 | 221944 | 222997 | Phantastica | AGI-08 | 93.657 | ||||||||||
| Bf0184 | O | - | - | - | - | - | Ciclev10021248m | scaffold_3 | 24893551 | 24898675 | C_unshiu_00286:mRNA_27.1 | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
| Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10019489m | scaffold_3 | 24840386 | 24845254 | C_unshiu_00286:mRNA_25.1 | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
| Af1087 | O | - | - | - | - | - | Ciclev10019689m | scaffold_3 | 24796351 | 24800588 | C_unshiu_00286:mRNA_17.1 | C_unshiu_00286 | 132648 | 135466 | Glycine hydroxymethyltransferase | AGI-05 | 41.306 | |||||||||||
| Cp0278 | - | - | - | - | - | - | Ciclev10022561m | scaffold_3 | 24750794 | 24752907 | C_unshiu_00286:mRNA_8.1 | C_unshiu_00286 | 73068 | 81236 | Hypothetical protein | AGI-04 | 122.142 | |||||||||||
| Bf0123 | - | - | - | - | - | - | SI141 | Ciclev10011473m | scaffold_6 | 15803864 | 15809998 | C_unshiu_00284:mRNA_13.1 | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
| Ov0510 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10011175m | scaffold_6 | 10016564 | 10019369 | C_unshiu_00279:mRNA_11.1 | C_unshiu_00279 | 116848 | 119657 | Phenylalanine ammonia-lyase 1 | KmG-04 | 62.284 | JtR-04 | 3.789 | ||||||||
| Ov0318 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10012779m | scaffold_6 | 19405285 | 19407278 | C_unshiu_00273:mRNA_20.1 | C_unshiu_00273 | 103250 | 105183 | 40S ribosomal protein S5 | ||||||||||||
| Cp0160 | - | - | - | - | - | - | Ciclev10019883m | scaffold_3 | 21940551 | 21944032 | C_unshiu_00272:mRNA_20.1 | C_unshiu_00272 | 187755 | 191248 | Endoglucanase | AGI-05 | 41.267 | |||||||||||
| Tf0014.2 | - | - | - | - | - | - | Ciclev10030185m | scaffold_8 | 24976315 | 24979483 | C_unshiu_00271:mRNA_9.1 | C_unshiu_00271 | 56325 | 61820 | Transcription factor | AGI-08 | ||||||||||||
| Al0224 | AAvailable marker | - | O | - | - | O | O | Ciclev10015872m | scaffold_2 | 26630154 | 26632900 | C_unshiu_00262:mRNA_19.1 | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
| Af1056 | - | - | - | - | - | - | Ciclev10015905m | scaffold_2 | 26595972 | 26598955 | C_unshiu_00262:mRNA_14.1 | C_unshiu_00262 | 84573 | 87520 | Purple acid phosphatase 3 | AGI-06 | 66.320 | |||||||||||
| Bf0147 | - | - | - | - | - | - | SI165 | Ciclev10014858m | scaffold_2 | 5975367 | 5977280 | C_unshiu_00260:mRNA_18.1 | C_unshiu_00260 | 124629 | 126502 | Flavonoid 3'-monooxygenase | RP-06.1 | 47.841 | ||||||||||
| Tf0173 | O | - | - | - | - | - | Ciclev10015413m | scaffold_2 | 26097343 | 26099320 | C_unshiu_00259:mRNA_35.1 | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
| Cp1162 | AAvailable marker | - | - | - | - | O | O | Ciclev10001345m | scaffold_5 | 35908181 | 35912917 | C_unshiu_00255:mRNA_35.1 | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
| Bf0016 | O | - | - | - | - | - | Ciclev10002605m | scaffold_5 | 35782419 | 35784765 | C_unshiu_00255:mRNA_23.1 | C_unshiu_00255 | 146364 | 148653 | Protein CutA 1, chloroplastic | RP-09 | 67.943 | |||||||||||
| Fb0207 | - | - | - | - | - | - | Ciclev10006449m | scaffold_9 | 3771162 | 3771725 | C_unshiu_00254:mRNA_35.1 | C_unshiu_00254 | 237120 | 239518 | Heat shock 22 kDa protein | RP-03 | 21.444 | |||||||||||
| Tf0254 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10010885m | scaffold_6 | 23916876 | 23939827 | C_unshiu_00253:mRNA_3.1 | C_unshiu_00253 | 14647 | 20586 | Hypothetical protein | AGI-04 | 38.226 | ||||||||||
| Ov0320 | - | - | - | - | - | - | Ciclev10005968m | scaffold_9 | 27640074 | 27641178 | C_unshiu_00252:mRNA_13.1 | C_unshiu_00252 | 89281 | 90198 | 21 kDa protein | RP-03 | 56.919 | |||||||||||
| Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | Ciclev10012265m | scaffold_6 | 22305922 | 22308021 | C_unshiu_00252:mRNA_6.1 | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
| Fb0180 | - | - | - | - | - | - | SI209 | Ciclev10005370m | scaffold_9 | 27734482 | 27736035 | C_unshiu_00252:mRNA_1.1 | C_unshiu_00252 | 12109 | 13626 | Hypothetical protein | RP-03 | 56.919 | ||||||||||
| Af1487 | - | - | - | - | - | - | Ciclev10028531m | scaffold_8 | 18155481 | 18157658 | C_unshiu_00251:mRNA_22.1 | C_unshiu_00251 | 205180 | 207288 | DnaJ | AGI-08 | 47.330 | |||||||||||
| Wy0019 | - | - | - | - | - | - | SI031 | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | ||||||||||||
| Tf0290 | AAvailable marker | O | - | - | - | O | O | Ciclev10029354m | scaffold_8 | 18064761 | 18071003 | C_unshiu_00251:mRNA_10.1 | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | AGI-08 | 57.802 | ||||||||||
| Ov0505 | AAvailable marker | - | - | - | - | - | O | Ciclev10031252m | scaffold_4 | 16626338 | 16629094 | C_unshiu_00250:mRNA_14.1 | C_unshiu_00250 | 82573 | 84397 | Tyrosine decarboxylase | KmG-07 | 53.887 | JtR-07 | 48.672 | NAT-07 | 3.814 | ||||||
| Tf0275 | AAvailable marker | O | - | - | - | O | O | Ciclev10006256m | scaffold_9 | 955176 | 957425 | C_unshiu_00249:mRNA_31.1 | C_unshiu_00249 | 191274 | 194861 | Transposon protein, putative, Mutator sub-class | AGI-03 | 11.501 | ||||||||||
| Ov0408 | AAvailable marker | - | - | - | - | - | O | Ciclev10011522m | scaffold_6 | 18491789 | 18493623 | C_unshiu_00248:mRNA_30.1 | C_unshiu_00248 | 247183 | 248778 | UDP-glycosyltransferase 71C4 | KmG-04 | 50.902 | RP-04 | 23.745 | ||||||||
| Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | Ciclev10017346m | scaffold_2 | 3067337 | 3069249 | C_unshiu_00246:mRNA_8.1 | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
| Bf1192 | - | - | - | - | - | - | Ciclev10008160m | scaffold_1 | 10678653 | 10684627 | C_unshiu_00242:mRNA_11.1 | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
| Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10003485m | scaffold_5 | 36398988 | 36399239 | C_unshiu_00241:mRNA_9.1 | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
| Tf0318 | AAvailable marker | O | O | O | - | O | O | Ciclev10031873m | scaffold_4 | 13751433 | 13754767 | C_unshiu_00240:mRNA_28.2 | C_unshiu_00240 | 282002 | 285335 | Transcription factor bHLH137 | AGI-07 | 37.467 | ||||||||||
| Tf0003.2 | OOthers | O | - | - | - | - | - | Ciclev10002471m | scaffold_5 | 37808878 | 37811097 | C_unshiu_00238:mRNA_14.1 | C_unshiu_00238 | 116142 | 129209 | Hypothetical protein | AGI-09 | 44.054 | ||||||||||
| Bf0213 | - | - | - | - | - | - | SI097 | Ciclev10000820m | scaffold_5 | 37693882 | 37699178 | C_unshiu_00238:mRNA_2.1 | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
| Tf0124 | - | - | - | - | - | - | Ciclev10007717m | scaffold_1 | 27457358 | 27462893 | C_unshiu_00237:mRNA_37.1 | C_unshiu_00237 | 259818 | 273281 | Dethiobiotin synthase | AGI-01 | 34.062 | |||||||||||
| Cp0632 | AAvailable marker | O | - | - | - | O | O | Ciclev10007941m | scaffold_1 | 27698934 | 27703620 | C_unshiu_00237:mRNA_7.1 | C_unshiu_00237 | 40930 | 45531 | Protein translocase subunit SecY | AGI-08 | 56.724 | ||||||||||
| Tf0243 | - | - | - | - | - | - | SI231 | Ciclev10032893m | scaffold_4 | 3636667 | 3641089 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | ||||||||||||
| Tf0348 | - | - | - | - | - | - | SI118 | Ciclev10012920m | scaffold_6 | 11611994 | 11614367 | C_unshiu_00236:mRNA_46.1 | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
| Lp0112 | AAvailable marker | O | - | - | - | - | - | Ciclev10032923m | scaffold_4 | 3749809 | 3751724 | C_unshiu_00236:mRNA_28.1 | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
| If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | Ciclev10001680m | scaffold_5 | 40628244 | 40630241 | C_unshiu_00234:mRNA_9.1 | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
| Wy0059 | Wy0059.em | - | - | - | - | - | - | Ciclev10012904m | scaffold_6 | 8562431 | 8564865 | C_unshiu_00232:mRNA_33.1 | C_unshiu_00232 | 292640 | 294683 | DUF538 family protein | AGI-08 | 91.502 | ||||||||||
| Bf0101 | - | - | - | - | - | - | Ciclev10003680m | scaffold_5 | 32917826 | 32924241 | C_unshiu_00229:mRNA_13.1 | C_unshiu_00229 | 57438 | 62744 | Hypothetical protein | NAT-09 | 50.353 | |||||||||||
| Lp0235 | O | - | - | - | - | - | Ciclev10019848m | scaffold_3 | 9466071 | 9468445 | C_unshiu_00227:mRNA_19.1 | C_unshiu_00227 | 186549 | 194369 | Nepenthesin II | AGI-05 | 43.412 | RP-05 | 44.731 | |||||||||
| Ov0413 | - | - | - | - | - | - | Ciclev10028322m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
| Al0632 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10028775m | scaffold_8 | 17809428 | 17813065 | C_unshiu_00225:mRNA_26.1 | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | AGI-08 | 56.724 | JtR-08 | 18.952 | ||||||||
| Tf0235 | MDisagree by Marco analysis | O | - | - | O | - | - | Ciclev10030472m | scaffold_4 | 17057658 | 17074755 | C_unshiu_00225:mRNA_13.1 | C_unshiu_00225 | 75706 | 96678 | TATA-binding protein-associated factor 172 | AGI-07 | 43.879 | ||||||||||
| Tf0112 | O | - | - | - | - | - | Ciclev10031118m | scaffold_4 | 17014582 | 17026325 | C_unshiu_00225:mRNA_9.1 | C_unshiu_00225 | 37090 | 44898 | Regulation of nuclear pre-mRNA domain-containing protein 1B | AGI-07 | 43.014 | |||||||||||
| Af1377 | - | - | - | - | - | - | Ciclev10001143m | scaffold_5 | 32780339 | 32783349 | C_unshiu_00224:mRNA_50.1 | C_unshiu_00224 | 297837 | 300694 | Seryl-tRNA synthetase (Serin-tRNA ligase) | AGI-09 | 70.624 | |||||||||||
| Cp0321 | AAvailable marker | - | - | - | - | - | O | Ciclev10026722m | scaffold_7 | 8898626 | 8899984 | C_unshiu_00221:mRNA_33.1 | C_unshiu_00221 | 211111 | 214358 | Hypothetical protein | ||||||||||||
| Al0638 | OOthers | O | - | - | - | - | - | Ciclev10027380m | scaffold_7 | 8662041 | 8665543 | C_unshiu_00221:mRNA_2.1 | C_unshiu_00221 | 6658 | 10157 | VHS domain-containing protein | KmG-07 | 23.435 | JtR-07 | 17.224 | NAT-07 | 24.049 | ||||||
| Tf0405 | - | - | - | - | - | - | Ciclev10027952m | scaffold_8 | 6025802 | 6031497 | C_unshiu_00220:mRNA_2.1 | C_unshiu_00220 | 48148 | 53214 | BEL1-like homeodomain protein 6 | AGI-08 | 61.643 | |||||||||||
| Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
| Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | Ciclev10026549m | scaffold_7 | 1309884 | 1311067 | C_unshiu_00218:mRNA_20.1 | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
| Wy0041 | - | - | - | - | - | - | Ciclev10025903m | scaffold_7 | 1295839 | 1297378 | C_unshiu_00218:mRNA_18.1 | C_unshiu_00218 | 93074 | 94183 | GDP-mannose 4,6 dehydratase 2 | AGI-02 | 75.406 | |||||||||||
| If0010 | AAvailable marker | O | - | - | - | O | - | Ciclev10026308m | scaffold_7 | 1264965 | 1266960 | C_unshiu_00218:mRNA_11.1 | C_unshiu_00218 | 63403 | 65018 | 60S ribosomal protein L8 | AGI-02 | 73.759 | KmG-02 | 76.687 | JtR-02 | 10.849 | NAT-02S | 71.041 | ||||
| Mf0080 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10021936m | scaffold_3 | 44202968 | 44205663 | C_unshiu_00217:mRNA_35.1 | C_unshiu_00217 | 286418 | 288656 | Transmembrane BAX inhibitor motif-containing protein 4 | AGI-05 | 55.049 | KmG-05S | 64.740 | JtR-05 | 38.503 | RP-04 | 37.046 | ||||
| Tf0068 | - | - | - | - | - | - | SI106 | Ciclev10020724m | scaffold_3 | 44141305 | 44144453 | C_unshiu_00217:mRNA_25.1 | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
| Af0015 | - | - | - | - | - | - | Ciclev10019449m | scaffold_3 | 44021779 | 44027536 | C_unshiu_00217:mRNA_10.1 | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
| Cp1798 | AAvailable marker | - | - | - | - | O | O | Ciclev10012134m | scaffold_6 | 20319677 | 20323198 | C_unshiu_00215:mRNA_34.1 | C_unshiu_00215 | 205164 | 208490 | Orange 2 | AGI-04 | 60.291 | ||||||||||
| Tf0303 | - | - | - | - | - | - | SI082 | Ciclev10030491m | scaffold_4 | 6325180 | 6334300 | C_unshiu_00210:mRNA_10.1 | C_unshiu_00210 | 52148 | 60690 | Putative lysine-specific demethylase ELF6 | ||||||||||||
| Af1619 | - | - | - | - | - | - | Ciclev10026784m | scaffold_7 | 1608634 | 1610659 | C_unshiu_00209:mRNA_18.2 | C_unshiu_00209 | 147009 | 148975 | Thioredoxin h | AGI-02 | 73.759 | |||||||||||
| Tf0062 | Bno homozygous cultivar with minor allele | O | - | - | O | - | - | SI223 | Ciclev10012377m | scaffold_6 | 11826472 | 11830875 | C_unshiu_00207:mRNA_24.2 | C_unshiu_00207 | 252955 | 255240 | Transcription factor ASG4 | AGI-08 | 93.624 | |||||||||
| Mf0076 | AAvailable marker | - | - | - | - | O | O | Ciclev10012554m | scaffold_6 | 11704199 | 11706676 | C_unshiu_00207:mRNA_15.1 | C_unshiu_00207 | 132539 | 134984 | Cytosolic ascorbate peroxidase | AGI-08 | 93.624 | ||||||||||
| Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | Ciclev10019665m | scaffold_3 | 50861813 | 50866146 | C_unshiu_00206:mRNA_42.1 | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
| Ov0114 | - | - | - | - | - | - | C_unshiu_00206:mRNA_12.3 | C_unshiu_00206 | 75980 | 77488 | Nucleoside diphosphate kinase | KmG-032 | 18.485 | JtR-031 | 11.761 | |||||||||||||
| Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | Ciclev10031860m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
| Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | Ciclev10031974m | scaffold_4 | 642157 | 644823 | C_unshiu_00202:mRNA_16.4 | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
| Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | Ciclev10008410m | scaffold_1 | 10946316 | 10949617 | C_unshiu_00201:mRNA_19.1 | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
| Ov0526 | OOthers | - | - | - | - | - | - | Ciclev10001212m | scaffold_5 | 21522433 | 21525218 | C_unshiu_00201:mRNA_11.2 | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | KmG-09 | JtR-09S | 0.758 | NAT-09 | ||||||||
| Gn0046 | - | - | - | - | - | - | Ciclev10001212m | scaffold_5 | 21522433 | 21525218 | C_unshiu_00201:mRNA_11.2 | C_unshiu_00201 | 136005 | 138785 | Aspartic proteinase nepenthesin-1 | AGI-07 | 64.812 | JtR-08 | 23.181 | |||||||||
| Cp1268 | - | - | - | - | - | - | Ciclev10021861m | scaffold_3 | 7327436 | 7329167 | C_unshiu_00199:mRNA_13.1 | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
| Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
| Mf0017 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10021897m | scaffold_3 | 7337405 | 7339222 | C_unshiu_00199:mRNA_11.1 | C_unshiu_00199 | 77240 | 79028 | Expansin | AGI-05 | 44.674 | ||||||||||
| Al0635 | AAvailable marker | - | - | - | - | O | O | Ciclev10015354m | scaffold_2 | 26435540 | 26438838 | C_unshiu_00197:mRNA_27.1 | C_unshiu_00197 | 251131 | 253300 | GAGA-binding transcriptional activator | AGI-06 | 69.195 | KmG-06 | 15.268 | JtR-06S | 1.903 | NAT-06S | 7.869 | ||||
| Af1205 | - | - | - | - | - | - | Ciclev10002396m | scaffold_5 | 34161721 | 34162652 | C_unshiu_00196:mRNA_4.1 | C_unshiu_00196 | 15219 | 16117 | Basic helix-loop-helix DNA-binding superfamily protein, putative | AGI-09 | 64.754 | |||||||||||
| Fb0133 | - | - | - | - | - | - | C_unshiu_00195:mRNA_19.1 | C_unshiu_00195 | 140861 | 146843 | Hypothetical protein | AGI-02 | 39.589 | KmG-02 | 1.175 | JtR-02 | 1.082 | |||||||||||
| Af1109 | - | - | - | - | - | - | C_unshiu_00194:mRNA_16.1 | C_unshiu_00194 | 96415 | 98120 | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 | AGI-05 | 48.590 | |||||||||||||||
| Al0605 | OOthers | - | - | - | - | - | - | Ciclev10022151m | scaffold_3 | 41434064 | 41437122 | C_unshiu_00194:mRNA_5.1 | C_unshiu_00194 | 38569 | 41571 | Eukaryotic translation initiation factor 4E | AGI-05 | 48.750 | KmG-05S | 65.384 | ||||||||
| Lg2005 | - | - | - | - | - | - | Ciclev10002751m | scaffold_5 | 42187714 | 42189727 | C_unshiu_00192:mRNA_45.1 | C_unshiu_00192 | 319592 | 321612 | SCF ubiquitin ligase, SKP1 component | AGI-09 | 34.172 | |||||||||||
| Al0513 | OOthers | - | - | - | - | - | - | Ciclev10009222m | scaffold_1 | 8046181 | 8049306 | C_unshiu_00191:mRNA_21.1 | C_unshiu_00191 | 243988 | 246458 | Stem 28 kDa glycoprotein | AGI-01 | 60.031 | KmG-01 | 41.591 | ||||||||
| Cp0185 | - | - | - | - | - | - | Ciclev10002024m | scaffold_5 | 34558362 | 34564638 | C_unshiu_00190:mRNA_33.1 | C_unshiu_00190 | 230947 | 237587 | Adenine phosphoribosyltransferase | AGI-03 | 51.129 | |||||||||||
| Tf0066 | - | - | - | - | - | - | SI221 | Ciclev10008812m | scaffold_1 | 18270818 | 18273015 | C_unshiu_00187:mRNA_34.1 | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
| Af1622 | - | - | - | - | - | - | Ciclev10008520m | scaffold_1 | 18117264 | 18119451 | C_unshiu_00187:mRNA_23.3 | C_unshiu_00187 | 141733 | 143877 | Protochlorophyllide reductase, chloroplastic | AGI-01 | 54.754 | |||||||||||
| Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | Ciclev10008537m | scaffold_1 | 18068297 | 18070262 | C_unshiu_00187:mRNA_17.1 | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
| Af1679 | - | - | - | - | - | - | Ciclev10021896m | scaffold_3 | 4260126 | 4262819 | C_unshiu_00186:mRNA_34.1 | C_unshiu_00186 | 288266 | 290432 | Adenylate kinase | AGI-05 | 29.035 | |||||||||||
| Al0207 | OOthers | - | - | - | - | - | - | Ciclev10020027m | scaffold_3 | 4366802 | 4370111 | C_unshiu_00186:mRNA_18.1 | C_unshiu_00186 | 178635 | 181547 | SNF1-related protein kinase regulatory subunit gamma-1 | AGI-09 | 84.537 | JtR-09S | 9.929 | ||||||||
| Ov0422 | AAvailable marker | - | - | - | - | - | O | Ciclev10016314m | scaffold_2 | 11071587 | 11074479 | C_unshiu_00184:mRNA_33.1 | C_unshiu_00184 | 295953 | 298736 | 14-3-3-like protein GF14 mu | RP-06.1 | 28.576 | ||||||||||
| Cp0747 | - | - | - | - | - | - | Ciclev10015418m | scaffold_2 | 11084960 | 11088767 | C_unshiu_00184:mRNA_32.1 | C_unshiu_00184 | 282295 | 285277 | ATP synthase protein I | AGI-09 | 85.816 | |||||||||||
| Fb0124 | - | - | - | - | - | - | SI167,SI212 | Ciclev10014164m | scaffold_2 | 11088808 | 11095416 | C_unshiu_00184:mRNA_31.1 | C_unshiu_00184 | 275231 | 281575 | Phosphoenolpyruvate carboxylase | ||||||||||||
| Tf0084 | - | - | - | - | - | - | Ciclev10000121m | scaffold_5 | 38288047 | 38296128 | C_unshiu_00183:mRNA_40.1 | C_unshiu_00183 | 305878 | 313881 | Transcription elongation factor SPT5 | AGI-09 | 44.096 | |||||||||||
| Fb0138 | - | - | - | - | - | - | Ciclev10000092m | scaffold_5 | 38499024 | 38504883 | C_unshiu_00183:mRNA_7.1 | C_unshiu_00183 | 86540 | 94072 | Regulator of chromosome condensation (RCC1) family with FYVEzinc finger domain | AGI-09 | 43.862 | KmG-09 | 54.172 | SA-09 | 50.659 | |||||||
| Tf0069 | - | - | - | - | - | - | SI199 | Ciclev10001715m | scaffold_5 | 38566192 | 38571337 | C_unshiu_00183:mRNA_2.1 | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
| Tf0085 | - | - | - | - | - | - | SI094,SI211 | Ciclev10012088m | scaffold_6 | 2067586 | 2073007 | C_unshiu_00176:mRNA_13.1 | C_unshiu_00176 | 89975 | 97731 | Transcription factor-like protein DPB | AGI-08 | 96.807 | ||||||||||
| Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10008869m | scaffold_1 | 23654785 | 23658857 | C_unshiu_00175:mRNA_30.1 | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
| Cp1556 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10018756m | scaffold_3 | 21432494 | 21440948 | C_unshiu_00175:mRNA_9.1 | C_unshiu_00175 | 91338 | 99600 | Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic | AGI-05 | 40.337 | ||||||||||
| Af1111 | - | - | - | - | - | - | Ciclev10015086m | scaffold_2 | 23021193 | 23023457 | C_unshiu_00172:mRNA_31.1 | C_unshiu_00172 | 270783 | 273047 | Glucan endo-1,3-beta-glucosidase 13 | AGI-06 | 83.445 | |||||||||||
| Tf0117 | - | - | - | - | - | - | Ciclev10005596m | scaffold_9 | 15107375 | 15113804 | C_unshiu_00170:mRNA_11.1 | C_unshiu_00170 | 91205 | 97326 | Myb family transcription factor APL | AGI-03 | 46.274 | |||||||||||
| Lp0040 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10026107m | scaffold_7 | 3674156 | 3676384 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | KmG-02 | 52.181 | JtR-02 | 25.334 | ||||||||
| Tf0259 | AAvailable marker | O | - | - | - | O | O | Ciclev10026107m | scaffold_7 | 3674156 | 3676384 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-02 | 67.666 | ||||||||||
| Tf0016 | - | - | - | - | - | - | SI345 | Ciclev10001979m | scaffold_5 | 39839984 | 39841860 | C_unshiu_00169:mRNA_34.1 | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-09 | 42.158 | ||||||||||
| Mf0094 | AAvailable marker | - | - | - | - | O | O | Ciclev10026594m | scaffold_7 | 3721375 | 3722616 | C_unshiu_00169:mRNA_29.1 | C_unshiu_00169 | 217948 | 219072 | Maternal effect embryo arrest protein | AGI-02 | 67.666 | KmG-02 | 52.124 | JtR-02 | 25.334 | ||||||
| Cp1584 | AAvailable marker | - | - | - | - | - | O | Ciclev10031523m | scaffold_4 | 201556 | 204527 | C_unshiu_00168:mRNA_36.1 | C_unshiu_00168 | 285304 | 287905 | Cell division cycle 20.1, cofactor of APC complex | ||||||||||||
| Tf0410 | AAvailable marker | O | - | - | - | O | O | Ciclev10032838m | scaffold_4 | 213798 | 215848 | C_unshiu_00168:mRNA_34.1 | C_unshiu_00168 | 273522 | 275858 | Pollen-specific protein SF3 | AGI-07 | 6.146 | ||||||||||
| Em0005 | Fb1892.em | - | - | - | - | - | - | C_unshiu_00168:mRNA_8.1 | C_unshiu_00168 | 76386 | 80254 | BEL1-like homeodomain protein 9 | AGI-07 | |||||||||||||||
| Tf0071 | - | - | - | - | - | - | SI084,SI146 | Ciclev10022102m | scaffold_3 | 26610747 | 26612959 | C_unshiu_00167:mRNA_6.1 | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
| Al0210 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10025724m | scaffold_7 | 6747139 | 6750382 | C_unshiu_00166:mRNA_28.1 | C_unshiu_00166 | 205256 | 208771 | Eukaryotic initiation factor 4A-10 | KmG-02 | 34.998 | JtR-02 | 15.126 | ||||||||
| Tf0319 | - | - | - | - | - | - | SI152 | Ciclev10026319m | scaffold_7 | 6872666 | 6877291 | C_unshiu_00166:mRNA_10.1 | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
| Af3822 | - | - | - | - | - | - | Ciclev10004695m | scaffold_9 | 5494254 | 5497030 | C_unshiu_00164:mRNA_13.1 | C_unshiu_00164 | 74059 | 75936 | Phosphate transporter | AGI-03 | 44.864 | |||||||||||
| Wy0020 | - | - | - | - | - | - | SI007 | Ciclev10005394m | scaffold_9 | 5549195 | 5553148 | C_unshiu_00164:mRNA_5.1 | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
| Af1253 | - | - | - | - | - | - | Ciclev10020405m | scaffold_3 | 3201206 | 3204377 | C_unshiu_00163:mRNA_29.1 | C_unshiu_00163 | 211551 | 214568 | Phosphate/phosphoenolpyruvate translocator | AGI-05 | 24.709 | |||||||||||
| Cp1500 | - | - | - | - | - | - | Ciclev10004776m | scaffold_9 | 7080249 | 7086989 | C_unshiu_00161:mRNA_19.1 | C_unshiu_00161 | 150519 | 157206 | 3-isopropylmalate dehydratase large subunit | AGI-03 | 46.274 | |||||||||||
| Mf0095 | OOthers | O | - | - | - | - | - | SI290 | Ciclev10005778m | scaffold_9 | 21216748 | 21221111 | C_unshiu_00160:mRNA_34.1 | C_unshiu_00160 | 290257 | 294371 | Transmembrane proteins 14C, putative isoform 1 | KmG-032 | JtR-031 | 11.958 | RP-03 | 43.323 | ||||||
| Cp1034 | AtAvailable marker | - | - | - | - | O | O | Ciclev10005575m | scaffold_9 | 21107894 | 21109983 | C_unshiu_00160:mRNA_22.1 | C_unshiu_00160 | 182942 | 184946 | Putative calcium-binding protein CML48 | AGI-03 | 46.760 | ||||||||||
| Lp0143 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10019139m | scaffold_3 | 6076949 | 6080875 | C_unshiu_00159:mRNA_40.1 | C_unshiu_00159 | 339926 | 343475 | Translation elongation factor G | AGI-05 | 45.297 | JtR-05 | 18.056 | ||||||||
| Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | Ciclev10027909m | scaffold_8 | 22730839 | 22737522 | C_unshiu_00158:mRNA_13.1 | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
| Bf1204 | - | - | - | - | - | - | SI364 | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
| Mf0072 | AAvailable marker | - | - | - | - | O | O | Ciclev10013297m | scaffold_6 | 13750671 | 13752605 | C_unshiu_00155:mRNA_3.1 | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | AGI-04 | 91.104 | KmG-04 | 58.483 | RP-04 | 8.126 | ||||||
| Bf0177 | - | - | - | - | - | - | SI060 | Ciclev10022075m | scaffold_3 | 8186689 | 8189902 | C_unshiu_00154:mRNA_43.2 | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
| Cp1815 | OOthers | - | - | - | - | - | - | Ciclev10022373m | scaffold_3 | 8256398 | 8257886 | C_unshiu_00154:mRNA_28.1 | C_unshiu_00154 | 274299 | 275412 | Wiskott-Aldrich syndrome protein family member 2 | AGI-05 | 51.501 | ||||||||||
| Tf0145 | - | - | - | - | - | - | SI092 | Ciclev10022479m | scaffold_3 | 8486491 | 8488997 | C_unshiu_00154:mRNA_7.1 | C_unshiu_00154 | 49131 | 60112 | Floral homeotic protein APETALA 1 | ||||||||||||
| Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | Ciclev10022680m | scaffold_3 | 8528292 | 8529236 | C_unshiu_00154:mRNA_1.1 | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
| Al0201 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10014752m | scaffold_2 | 32780830 | 32782885 | C_unshiu_00153:mRNA_49.1 | C_unshiu_00153 | 346248 | 348256 | Armadillo/beta-catenin-like repeat family protein, expressed | ||||||||||||
| Tf0004 | - | - | - | - | - | - | SI219,SI330 | Ciclev10014045m | scaffold_2 | 33074821 | 33084014 | C_unshiu_00153:mRNA_7.1 | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
| Lg2004 | - | - | - | - | - | - | Ciclev10028785m | scaffold_8 | 2599717 | 2602090 | C_unshiu_00152:mRNA_53.1 | C_unshiu_00152 | 347645 | 349890 | Cinnamyl alcohol dehydrogenase | AGI-08 | 76.045 | |||||||||||
| Lg2002 | - | - | - | - | - | - | Ciclev10028055m | scaffold_8 | 2646458 | 2649562 | C_unshiu_00152:mRNA_44.1 | C_unshiu_00152 | 294607 | 297615 | Phosphoglycerate dehydrogenase | AGI-08 | 69.974 | |||||||||||
| Cp1144 | OOthers | - | - | - | - | - | - | Ciclev10028086m | scaffold_8 | 2649991 | 2655756 | C_unshiu_00152:mRNA_43.1 | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
| Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | Ciclev10030023m | scaffold_8 | 2673135 | 2674232 | C_unshiu_00152:mRNA_38.1 | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
| Fb0293 | - | - | - | - | - | - | SI198,SI374 | C_unshiu_00152:mRNA_37.1 | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
| Tf0250 | AAvailable marker | O | - | - | - | O | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | AGI-08 | 73.105 | ||||||||||
| Tf0431 | AAvailable marker | O | - | - | - | - | O | Ciclev10028849m | scaffold_8 | 2697793 | 2701440 | C_unshiu_00152:mRNA_36.1 | C_unshiu_00152 | 252884 | 256413 | DNA-directed RNA polymerase II subunit RPB3-A | ||||||||||||
| Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10023016m | scaffold_3 | 42954362 | 42955051 | C_unshiu_00152:mRNA_28.1 | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
| Lp0226 | O | - | - | - | - | - | SI210 | Ciclev10027999m | scaffold_8 | 2831832 | 2837109 | C_unshiu_00152:mRNA_19.1 | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
| Af1362 | - | - | - | - | - | - | Ciclev10027931m | scaffold_8 | 2888992 | 2895645 | C_unshiu_00152:mRNA_9.1 | C_unshiu_00152 | 72564 | 86513 | Hypothetical protein | AGI-08 | 80.366 | |||||||||||
| Fb0143 | - | - | - | - | - | - | SI361 | Ciclev10007397m | scaffold_1 | 25283807 | 25291472 | C_unshiu_00150:mRNA_43.1 | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
| Wy0028 | AAvailable marker | - | - | - | - | O | O | Ciclev10007806m | scaffold_1 | 25001341 | 25004726 | C_unshiu_00150:mRNA_3.1 | C_unshiu_00150 | 18652 | 22079 | Probable pectinesterase/pectinesterase inhibitor 61 | AGI-01 | 26.171 | KmG-01 | |||||||||
| Tf0268 | AAvailable marker | O | - | - | - | O | O | Ciclev10021157m | scaffold_3 | 10140904 | 10142752 | C_unshiu_00149:mRNA_29.1 | C_unshiu_00149 | 326478 | 328059 | Transcription factor MYB21 | AGI-05 | 43.800 | ||||||||||
| Af1586 | - | - | - | - | - | - | Ciclev10005733m | scaffold_9 | 23119502 | 23122347 | C_unshiu_00148:mRNA_17.1 | C_unshiu_00148 | 145165 | 147922 | Glycoprotein family protein | AGI-03 | 63.545 | |||||||||||
| Cp1308 | AAvailable marker | - | O | - | - | O | O | Ciclev10011420m | scaffold_6 | 6329421 | 6335005 | C_unshiu_00147:mRNA_29.1 | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
| Lp0041 | AAvailable marker | - | - | - | - | - | O | Ciclev10006136m | scaffold_9 | 6354796 | 6356630 | C_unshiu_00146:mRNA_22.1 | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | KmG-032 | 17.549 | JtR-031 | 14.643 | RP-03 | 29.608 | ||||||
| Af1456 | - | - | - | - | - | - | Ciclev10006136m | scaffold_9 | 6354796 | 6356630 | C_unshiu_00146:mRNA_22.1 | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | AGI-03 | 46.298 | |||||||||||
| Wy0003 | AAvailable marker | O | - | - | - | O | O | Ciclev10001202m | scaffold_5 | 37189653 | 37192231 | C_unshiu_00144:mRNA_30.1 | C_unshiu_00144 | 215223 | 217733 | Aminotransferase | AGI-09 | 46.823 | KmG-09 | 52.581 | NAT-09 | 69.467 | ||||||
| Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | Ciclev10015053m | scaffold_2 | 31036088 | 31038222 | C_unshiu_00143:mRNA_11.1 | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
| Fb1134.2 | - | - | - | - | - | - | Ciclev10030474m | scaffold_4 | 9547707 | 9559498 | C_unshiu_00140:mRNA_14.1 | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
| Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | C_unshiu_00139:mRNA_45.1 | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
| Gn0047 | - | - | - | - | - | - | Ciclev10011938m | scaffold_6 | 18741181 | 18744166 | C_unshiu_00139:mRNA_23.1 | C_unshiu_00139 | 204645 | 207518 | Squamosa promoter-binding-like protein 9 | KmG-04 | 48.092 | |||||||||||
| Gn0012 | - | - | - | - | - | - | Ciclev10018889m | scaffold_3 | 46011238 | 46017249 | C_unshiu_00139:mRNA_16.1 | C_unshiu_00139 | 135708 | 141900 | Sucrose synthase | KmG-05S | 78.527 | |||||||||||
| Af1700 | - | - | - | - | - | - | Ciclev10004322m | scaffold_9 | 18502293 | 18505531 | C_unshiu_00138:mRNA_34.1 | C_unshiu_00138 | 182719 | 186200 | Putative receptor protein kinase TMK1 | AGI-03 | 54.060 | |||||||||||
| Af1424 | - | - | - | - | - | - | Ciclev10008953m | scaffold_1 | 18688873 | 18690138 | C_unshiu_00137:mRNA_44.1 | C_unshiu_00137 | 354434 | 355481 | CFE protein | AGI-01 | 43.613 | |||||||||||
| Af1026 | O | - | - | - | - | - | Ciclev10016450m | scaffold_2 | 24690261 | 24692734 | C_unshiu_00136:mRNA_33.1 | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
| Lp0229 | O | - | - | - | - | - | Ciclev10015636m | scaffold_2 | 24637053 | 24639946 | C_unshiu_00136:mRNA_24.1 | C_unshiu_00136 | 221432 | 223640 | ARM repeat superfamily protein | RP-06.1 | 25.198 | |||||||||||
| Tf0294 | AAvailable marker | O | - | - | - | O | O | Ciclev10021365m | scaffold_3 | 4794701 | 4799518 | C_unshiu_00135:mRNA_58.2 | C_unshiu_00135 | 398519 | 403121 | Ureidoglycine aminohydrolase isoform 1 | AGI-05 | 27.135 | ||||||||||
| Tf0364 | AAvailable marker | O | - | - | - | O | O | Ciclev10011266m | scaffold_6 | 24606501 | 24612654 | C_unshiu_00135:mRNA_49.1 | C_unshiu_00135 | 338118 | 344273 | FACT complex subunit SSRP1 | AGI-04 | 37.102 | ||||||||||
| Tf0050 | - | - | - | - | - | - | SI104,SI346 | Ciclev10012152m | scaffold_6 | 24874840 | 24876388 | C_unshiu_00135:mRNA_12.1 | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
| Vt0009 | - | - | - | - | - | - | Ciclev10012382m | scaffold_6 | 24932481 | 24935909 | C_unshiu_00135:mRNA_6.1 | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
| Tf0143 | - | - | - | - | - | - | SI127 | Ciclev10004758m | scaffold_9 | 30040457 | 30044615 | C_unshiu_00134:mRNA_22.1 | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
| Lp0009 | DDominant marker | - | - | - | - | - | - | Ciclev10005585m | scaffold_9 | 30171791 | 30177202 | C_unshiu_00134:mRNA_8.1 | C_unshiu_00134 | 71410 | 76705 | Phosphatase 2C 76 isoform 1 | KmG-05S | 36.573 | JtR-05 | 12.427 | ||||||||
| Af1462 | - | - | - | - | - | - | Ciclev10012884m | scaffold_6 | 24274031 | 24276658 | C_unshiu_00133:mRNA_50.1 | C_unshiu_00133 | 274230 | 284897 | Hypothetical protein | AGI-04 | 37.527 | |||||||||||
| Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | Ciclev10011780m | scaffold_6 | 24082263 | 24084635 | C_unshiu_00133:mRNA_13.1 | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
| Al0313 | AAvailable marker | O | - | - | - | O | O | Ciclev10011272m | scaffold_6 | 23966039 | 23969583 | C_unshiu_00133:mRNA_4.2 | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
| Bf0221 | - | - | - | - | - | - | Ciclev10005970m | scaffold_9 | 24195180 | 24198282 | C_unshiu_00132:mRNA_22.1 | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
| Al0407 | AAvailable marker | O | - | - | - | O | O | Ciclev10009315m | scaffold_1 | 26576059 | 26578193 | C_unshiu_00131:mRNA_17.1 | C_unshiu_00131 | 121152 | 123183 | 60S ribosomal protein L7 | AGI-01 | 31.240 | KmG-01 | 15.673 | JtR-01S | 57.666 | RP-01 | 79.425 | ||||
| Al0630 | AAvailable marker | O | - | - | - | - | O | Ciclev10008681m | scaffold_1 | 487184 | 489198 | C_unshiu_00129:mRNA_38.1 | C_unshiu_00129 | 342865 | 344872 | Kelch repeat-containing F-box family protein | RP-01 | 1.092 | ||||||||||
| Tf0226 | AAvailable marker | O | - | - | - | - | O | Ciclev10008836m | scaffold_1 | 526813 | 529150 | C_unshiu_00129:mRNA_32.1 | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
| Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | Ciclev10000046m | scaffold_5 | 41184180 | 41190033 | C_unshiu_00127:mRNA_46.1 | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
| Tf0088 | MDisagree by Marco analysis | O | - | - | - | - | - | SI066 | Ciclev10001291m | scaffold_5 | 41275201 | 41278829 | C_unshiu_00127:mRNA_34.1 | C_unshiu_00127 | 251592 | 254627 | Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | AGI-09 | 35.763 | |||||||||
| Tf0258 | - | - | - | - | - | - | SI234 | Ciclev10000508m | scaffold_5 | 41372513 | 41377106 | C_unshiu_00127:mRNA_21.1 | C_unshiu_00127 | 163658 | 166645 | BEL1-like homeodomain protein 6 | ||||||||||||
| Af1645 | - | - | - | - | - | - | Ciclev10000427m | scaffold_5 | 2472805 | 2477375 | C_unshiu_00127:mRNA_11.1 | C_unshiu_00127 | 52207 | 62775 | Class I (E and Q) tRNA synthetase | AGI-09 | 90.878 | |||||||||||
| Wy0044.3 | - | - | - | - | - | - | Ciclev10020328m | scaffold_3 | 49621665 | 49623875 | C_unshiu_00126:mRNA_45.1 | C_unshiu_00126 | 300225 | 314275 | Hypothetical protein | RP-05 | 49.102 | |||||||||||
| Cp0221 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10016539m | scaffold_2 | 30648531 | 30649856 | C_unshiu_00125:mRNA_61.1 | C_unshiu_00125 | 360098 | 361069 | Photosystem I reaction center subunit III | ||||||||||||
| Al0618 | AAvailable marker | - | - | - | - | O | O | Ciclev10000916m | scaffold_5 | 40872793 | 40877775 | C_unshiu_00123:mRNA_34.1 | C_unshiu_00123 | 204269 | 222067 | Phosphatase 2c, putative isoform 6 | AGI-09 | 38.004 | KmG-09 | 73.330 | ||||||||
| Gn0041 | AAvailable marker | - | - | - | - | - | O | C_unshiu_00123:mRNA_16.1 | C_unshiu_00123 | 116817 | 119061 | Homeobox-leucine zipper protein HAT5 | KmG-05S | 9.772 | JtR-05 | 28.396 | ||||||||||||
| Lp0013 | - | - | - | - | - | - | Ciclev10004852m | scaffold_9 | 16971264 | 16973312 | C_unshiu_00122:mRNA_43.1 | C_unshiu_00122 | 389000 | 391027 | Adenosylhomocysteinase | KmG-09 | 15.606 | |||||||||||
| Bf0229 | - | - | - | - | - | - | SI253 | Ciclev10004848m | scaffold_9 | 17242218 | 17245901 | C_unshiu_00122:mRNA_16.1 | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
| Fb1751 | - | - | - | - | - | - | SI264 | Ciclev10025011m | scaffold_7 | 7977527 | 7984425 | C_unshiu_00121:mRNA_40.1 | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
| Bf0174 | O | - | - | - | - | - | SI282 | Ciclev10019861m | scaffold_3 | 3551542 | 3555978 | C_unshiu_00120:mRNA_17.1 | C_unshiu_00120 | 130029 | 134158 | Atp-dependent RNA helicase | AGI-05 | 25.049 | ||||||||||
| Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | Ciclev10004372m | scaffold_9 | 25073693 | 25080376 | C_unshiu_00119:mRNA_33.1 | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
| Bf0020 | - | - | - | - | - | - | Ciclev10005107m | scaffold_9 | 25185200 | 25188839 | C_unshiu_00119:mRNA_25.1 | C_unshiu_00119 | 238437 | 248656 | Guanylate kinase | AGI-03 | 47.887 | RP-03 | 37.189 | |||||||||
| Af0016 | - | - | - | - | - | - | Ciclev10022861m | scaffold_3 | 25074163 | 25075916 | C_unshiu_00117:mRNA_7.1 | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
| Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
| Tf0396 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI035 | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | |||||||||||
| Tf0423 | - | - | - | - | - | - | Ciclev10005087m | scaffold_9 | 25662049 | 25666791 | C_unshiu_00115:mRNA_31.1 | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 50.361 | |||||||||||
| Cp2118 | - | - | - | - | - | - | Ciclev10032406m | scaffold_4 | 14565456 | 14568265 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 37.152 | |||||||||||
| Bf0027 | - | - | - | - | - | - | SI372 | Ciclev10032632m | scaffold_4 | 14565456 | 14567860 | C_unshiu_00113:mRNA_23.1 | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 40.515 | ||||||||||
| Al0331 | AAvailable marker | - | - | - | - | - | O | Ciclev10033190m | scaffold_4 | 8406632 | 8407188 | C_unshiu_00111:mRNA_9.1 | C_unshiu_00111 | 83531 | 84087 | Hypothetical protein | KmG-09 | 9.593 | JtR-07 | 52.611 | RP-07 | 19.079 | ||||||
| Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | Ciclev10002290m | scaffold_5 | 29400846 | 29403554 | C_unshiu_00110:mRNA_26.1 | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
| Tf0093.2 | AAvailable marker | O | - | - | - | O | O | Ciclev10002569m | scaffold_5 | 29413143 | 29414562 | C_unshiu_00110:mRNA_25.1 | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | AGI-09 | 86.512 | ||||||||||
| Tf0393 | AAvailable marker | O | - | - | - | - | O | Ciclev10002569m | scaffold_5 | 29413143 | 29414562 | C_unshiu_00110:mRNA_25.1 | C_unshiu_00110 | 149681 | 150624 | Auxin-responsive protein IAA4 | RP-09 | 29.347 | ||||||||||
| Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | Ciclev10015338m | scaffold_2 | 290799 | 294122 | C_unshiu_00109:mRNA_36.1 | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
| Tf0264 | AAvailable marker | O | - | - | - | O | O | Ciclev10015873m | scaffold_2 | 248256 | 250675 | C_unshiu_00109:mRNA_29.1 | C_unshiu_00109 | 175776 | 179005 | GAN | AGI-06 | 103.728 | ||||||||||
| Af1321 | - | - | - | - | - | - | Ciclev10009751m | scaffold_1 | 16371168 | 16375666 | C_unshiu_00108:mRNA_25.1 | C_unshiu_00108 | 320409 | 344557 | Hypothetical protein | AGI-06 | 34.500 | |||||||||||
| Mf0088 | OOthers | O | - | - | - | - | - | Ciclev10001453m | scaffold_5 | 5104067 | 5106917 | C_unshiu_00108:mRNA_11.1 | C_unshiu_00108 | 101283 | 105493 | 60S ribosomal protein L3 | RP-09 | |||||||||||
| Tf0163 | AAvailable marker | O | - | - | - | O | O | Ciclev10010423m | scaffold_1 | 26740822 | 26744016 | C_unshiu_00105:mRNA_35.1 | C_unshiu_00105 | 316978 | 320206 | RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 | AGI-01 | 31.240 | ||||||||||
| Tf0224 | OOthers | O | - | - | - | - | - | Ciclev10011741m | scaffold_6 | 7785328 | 7796808 | C_unshiu_00104:mRNA_54.1 | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
| Bf1207 | - | - | - | - | - | - | Ciclev10010835m | scaffold_1 | 22912695 | 22913798 | C_unshiu_00103:mRNA_59.1 | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
| Cp2158 | MDisagree by Marco analysis | - | - | - | - | - | - | Ciclev10007944m | scaffold_1 | 22847397 | 22852110 | C_unshiu_00103:mRNA_47.1 | C_unshiu_00103 | 254015 | 258614 | Trigger factor type chaperone family protein | AGI-01 | 24.422 | ||||||||||
| Bf0036 | AAvailable marker | O | O | - | O | O | O | Ciclev10008751m | scaffold_1 | 22840947 | 22844111 | C_unshiu_00103:mRNA_45.1 | C_unshiu_00103 | 244231 | 250643 | GrpE protein homolog | AGI-01 | 29.144 | RP-01 | 46.445 | ||||||||
| Fb0103 | OOthers | O | - | - | - | - | - | SI155 | Ciclev10008255m | scaffold_1 | 22758712 | 22761740 | C_unshiu_00103:mRNA_27.1 | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
| Cp1852 | - | - | - | - | - | - | Ciclev10010530m | scaffold_1 | 22711668 | 22715696 | C_unshiu_00103:mRNA_19.2 | C_unshiu_00103 | 116559 | 121057 | Cell differentiation protein rcd1 | AGI-02 | 9.592 | |||||||||||
| Af1062 | - | - | - | - | - | - | Ciclev10012766m | scaffold_6 | 14892939 | 14897320 | C_unshiu_00102:mRNA_47.1 | C_unshiu_00102 | 331172 | 333886 | PRA1 family protein A1 | AGI-08 | 93.624 | |||||||||||
| Fb1430 | Fb1430.lg | O | - | - | - | - | - | Ciclev10005994m | scaffold_9 | 1879675 | 1880523 | C_unshiu_00102:mRNA_3.1 | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
| Bf0171 | - | - | - | - | - | - | SI381 | Ciclev10006006m | scaffold_9 | 4116356 | 4117315 | C_unshiu_00101:mRNA_25.1 | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
| Af1116 | - | - | - | - | - | - | Ciclev10001154m | scaffold_5 | 6749024 | 6753178 | C_unshiu_00100:mRNA_44.1 | C_unshiu_00100 | 361556 | 365479 | Magnesium transporter MRS2-like protein | AGI-09 | 85.810 | |||||||||||
| Tf0310 | - | - | - | - | - | - | Ciclev10031598m | scaffold_4 | 19681884 | 19685929 | C_unshiu_00099:mRNA_27.1 | C_unshiu_00099 | 233334 | 237357 | NAC domain-containing protein 8 | AGI-07 | 54.869 | |||||||||||
| Tf0337 | AAvailable marker | O | - | - | - | O | O | Ciclev10031846m | scaffold_4 | 19635415 | 19637061 | C_unshiu_00099:mRNA_23.1 | C_unshiu_00099 | 186480 | 188051 | Ap2 erf and b3 domain-containing transcription factor rav2 | AGI-07 | 54.869 | ||||||||||
| Tf0165 | AAvailable marker | O | - | - | - | O | O | Ciclev10031793m | scaffold_4 | 19605473 | 19608059 | C_unshiu_00099:mRNA_19.1 | C_unshiu_00099 | 154500 | 156794 | Two-component response regulator ARR18 | AGI-07 | 55.503 | ||||||||||
| Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | Ciclev10032902m | scaffold_4 | 19467669 | 19468803 | C_unshiu_00099:mRNA_4.1 | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
| Tf0397 | - | - | - | - | - | - | SI008 | Ciclev10013334m | scaffold_6 | 23657256 | 23657810 | C_unshiu_00098:mRNA_65.1 | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
| Tf0208 | - | - | - | - | - | - | SI181 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
| Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | Ciclev10012022m | scaffold_6 | 23593516 | 23595492 | C_unshiu_00098:mRNA_56.1 | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
| Cp2026 | AAvailable marker | - | - | - | - | O | O | Ciclev10011534m | scaffold_6 | 23506491 | 23509585 | C_unshiu_00098:mRNA_44.1 | C_unshiu_00098 | 286004 | 289150 | Tryptophan synthase, beta subunit | AGI-04 | 43.239 | ||||||||||
| Fb0365 | O | - | - | - | - | - | SI036,SI320 | Ciclev10026391m | scaffold_7 | 20872462 | 20874659 | C_unshiu_00098:mRNA_41.1 | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
| Af1639 | - | - | - | - | - | - | Ciclev10012116m | scaffold_6 | 23462487 | 23466580 | C_unshiu_00098:mRNA_36.1 | C_unshiu_00098 | 239683 | 243712 | Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 1 | AGI-04 | 6.635 | |||||||||||
| Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10013467m | scaffold_6 | 23430375 | 23436161 | C_unshiu_00098:mRNA_32.2 | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
| Cp0085 | O | - | - | - | - | - | Ciclev10012552m | scaffold_6 | 23364303 | 23366061 | C_unshiu_00098:mRNA_21.1 | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | AGI-04 | 42.183 | |||||||||||
| Al0020 | OOthers | - | - | - | - | - | - | Ciclev10012552m | scaffold_6 | 23364303 | 23366061 | C_unshiu_00098:mRNA_21.1 | C_unshiu_00098 | 143026 | 144827 | Allene oxide cyclase | KmG-04 | |||||||||||
| Gn0008 | OOthers | - | - | - | - | - | - | SI176 | Ciclev10005632m | scaffold_9 | 17789634 | 17793258 | C_unshiu_00098:mRNA_1.1 | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
| Cp1923 | OOthers | - | - | - | - | - | - | Ciclev10005293m | scaffold_9 | 2946301 | 2950297 | C_unshiu_00097:mRNA_22.1 | C_unshiu_00097 | 195825 | 199499 | UPF0613 protein PB24D3.06c | AGI-03 | 22.454 | ||||||||||
| Fb2156 | Fb2156.lg | O | - | - | - | - | - | Ciclev10000537m | scaffold_5 | 39992234 | 39996269 | C_unshiu_00096:mRNA_31.1 | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
| Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10000651m | scaffold_5 | 39858531 | 39862402 | C_unshiu_00096:mRNA_9.1 | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
| Bf0130 | - | - | - | - | - | - | SI063,SI188 | Ciclev10004858m | scaffold_9 | 26981498 | 26984277 | C_unshiu_00095:mRNA_24.1 | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
| Tf0205 | OOthers | O | - | - | - | - | - | SI274 | Ciclev10005062m | scaffold_9 | 16383851 | 16393557 | C_unshiu_00094:mRNA_29.1 | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
| Al0317 | - | - | - | - | - | - | Ciclev10021392m | scaffold_3 | 3006218 | 3008357 | C_unshiu_00092:mRNA_60.1 | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
| Al0637 | AAvailable marker | O | - | - | - | - | O | SI353 | Ciclev10019147m | scaffold_3 | 2939620 | 2941934 | C_unshiu_00092:mRNA_51.1 | C_unshiu_00092 | 363486 | 365791 | Spotted leaf protein, putative | |||||||||||
| Ov0012 | - | - | - | - | - | - | Ciclev10019638m | scaffold_3 | 2933121 | 2937460 | C_unshiu_00092:mRNA_50.1 | C_unshiu_00092 | 356984 | 361021 | Aldehyde dehydrogenase | KmG-05S | 100.000 | |||||||||||
| Tf0432 | AAvailable marker | O | - | - | - | O | O | Ciclev10016685m | scaffold_2 | 31420457 | 31425299 | C_unshiu_00091:mRNA_39.1 | C_unshiu_00091 | 370141 | 375026 | Nuclear transcription factor Y subunit A-7 | AGI-06 | 38.958 | ||||||||||
| Cp0849 | - | - | - | - | - | - | SI355 | Ciclev10012425m | scaffold_6 | 17651466 | 17653457 | C_unshiu_00090:mRNA_56.2 | C_unshiu_00090 | 364770 | 367591 | Non-green plastid inner envelope membrane protein | ||||||||||||
| Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | Ciclev10010926m | scaffold_6 | 19105139 | 19113780 | C_unshiu_00089:mRNA_17.1 | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
| Tf0075 | - | - | - | - | - | - | SI059,SI248 | Ciclev10010972m | scaffold_6 | 19142307 | 19156510 | C_unshiu_00089:mRNA_11.1 | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
| Cp0895 | AAvailable marker | - | - | - | - | O | O | Ciclev10011406m | scaffold_6 | 19241700 | 19246874 | C_unshiu_00089:mRNA_3.1 | C_unshiu_00089 | 9945 | 14749 | ATP-dependent RNA helicase | AGI-04 | 67.375 | ||||||||||
| Cp1011 | - | - | - | - | - | - | Ciclev10016354m | scaffold_2 | 25346439 | 25350875 | C_unshiu_00087:mRNA_55.1 | C_unshiu_00087 | 398683 | 402763 | ZZ-type zinc finger-containing 3 | AGI-09 | 115.692 | |||||||||||
| Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | C_unshiu_00087:mRNA_54.1 | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
| Fb0389 | - | - | - | - | - | - | Ciclev10014121m | scaffold_2 | 25179668 | 25188103 | C_unshiu_00087:mRNA_31.1 | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
| Tf0090 | AAvailable marker | O | - | - | - | - | O | Ciclev10031135m | scaffold_4 | 16519046 | 16521918 | C_unshiu_00086:mRNA_45.1 | C_unshiu_00086 | 374812 | 377677 | Transcription factor bHLH62 | ||||||||||||
| Al0231 | - | - | - | - | - | - | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
| Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | Ciclev10033176m | scaffold_4 | 16232756 | 16233365 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
| Tf0320 | - | - | - | - | - | - | SI203 | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.2 | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 45.716 | ||||||||||
| Edw001 | AAvailable marker | - | - | - | - | - | O | Ciclev10033829m | scaffold_4 | 16223771 | 16226683 | C_unshiu_00086:mRNA_13.1 | C_unshiu_00086 | 99963 | 109609 | Shatterproof | ||||||||||||
| Fb0234 | - | - | - | - | - | - | SI250,SI265 | Ciclev10032271m | scaffold_4 | 16176836 | 16178421 | C_unshiu_00086:mRNA_8.1 | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
| Af1177 | - | - | - | - | - | - | Ciclev10005989m | scaffold_9 | 2168387 | 2170546 | C_unshiu_00085:mRNA_13.1 | C_unshiu_00085 | 78341 | 80308 | CASP-like protein 1E1 | AGI-03 | 18.579 | |||||||||||
| Fb0227 | - | - | - | - | - | - | Ciclev10026002m | scaffold_7 | 2938059 | 2940407 | C_unshiu_00084:mRNA_42.1 | C_unshiu_00084 | 428180 | 435326 | Phospholipase, patatin family | AGI-02 | 70.082 | RP-02.2 | 12.696 | |||||||||
| Bf0204 | - | - | - | - | - | - | SI326 | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | RP-02.2 | 9.835 | ||||||||||
| Gn0068 | - | - | - | - | - | - | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | AGI-02 | 68.446 | RP-02.2 | 9.814 | |||||||||
| Gn0068.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10025089m | scaffold_7 | 3222483 | 3228894 | C_unshiu_00084:mRNA_14.1 | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | ||||||||||||
| Ov0018 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10028443m | scaffold_8 | 22316999 | 22319482 | C_unshiu_00082:mRNA_34.1 | C_unshiu_00082 | 267163 | 269630 | Elongation factor 1-alpha | ||||||||||||
| Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | Ciclev10016280m | scaffold_2 | 23891814 | 23893095 | C_unshiu_00081:mRNA_50.1 | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
| Af1554 | - | - | - | - | - | - | Ciclev10009386m | scaffold_1 | 23753759 | 23756754 | C_unshiu_00080:mRNA_59.1 | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
| Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | Ciclev10007493m | scaffold_1 | 23776796 | 23782088 | C_unshiu_00080:mRNA_56.1 | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
| Af1508 | - | - | - | - | - | - | Ciclev10011580m | scaffold_6 | 21983044 | 21991500 | C_unshiu_00079:mRNA_48.1 | C_unshiu_00079 | 328854 | 336213 | Stomatal closure-related actin-binding protein 3 | AGI-04 | 1.342 | |||||||||||
| Bf1186 | - | - | - | - | - | - | SI245 | Ciclev10012047m | scaffold_6 | 21912438 | 21917736 | C_unshiu_00079:mRNA_40.1 | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
| Tf0021 | AAvailable marker | - | - | - | - | - | O | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | ||||||||||||
| Af1499 | - | - | - | - | - | - | Ciclev10011169m | scaffold_6 | 21905557 | 21908832 | C_unshiu_00079:mRNA_39.1 | C_unshiu_00079 | 273228 | 275864 | BZIP transcription factor family protein | AGI-04 | ||||||||||||
| Tf0402 | - | - | - | - | - | - | Ciclev10015893m | scaffold_2 | 36211961 | 36216858 | C_unshiu_00077:mRNA_57.1 | C_unshiu_00077 | 335424 | 340163 | MYB-CC type transfactor | AGI-06 | 9.560 | |||||||||||
| Bf0193 | O | - | - | - | - | - | SI100,SI109 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
| Tf0330 | - | - | - | - | - | - | SI064,SI139 | Ciclev10014811m | scaffold_2 | 35970577 | 35973973 | C_unshiu_00077:mRNA_15.2 | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
| Gn0073 | AAvailable marker | O | O | - | - | O | O | Ciclev10014770m | scaffold_2 | 35895662 | 35898841 | C_unshiu_00077:mRNA_4.1 | C_unshiu_00077 | 30410 | 32987 | Tonoplast dicarboxylate transporter | AGI-06 | 12.402 | ||||||||||
| Tf0263 | - | - | - | - | - | - | SI013 | Ciclev10008768m | scaffold_1 | 6358030 | 6359568 | C_unshiu_00075:mRNA_22.1 | C_unshiu_00075 | 227733 | 229211 | Heat shock transcription factor A7a1 | ||||||||||||
| Mf0033 | AAvailable marker | - | - | - | - | O | O | Ciclev10010044m | scaffold_1 | 6227617 | 6228389 | C_unshiu_00075:mRNA_11.1 | C_unshiu_00075 | 123779 | 124531 | Hypothetical protein | AGI-01 | 62.570 | KmG-01 | 46.353 | JtR-01S | 106.811 | NAT-01S | 77.905 | ||||
| Cp0415 | - | - | - | - | - | - | Ciclev10011681m | scaffold_6 | 22213544 | 22219300 | C_unshiu_00074:mRNA_13.1 | C_unshiu_00074 | 81301 | 86950 | ATA15 protein | AGI-04 | 50.134 | |||||||||||
| Cp0214 | OOthers | - | - | - | - | - | - | Ciclev10016075m | scaffold_2 | 29732249 | 29735969 | C_unshiu_00073:mRNA_25.1 | C_unshiu_00073 | 178507 | 182191 | MOSC domain-containing protein 2, mitochondrial | AGI-06 | 46.660 | ||||||||||
| Af1636 | - | - | - | - | - | - | Ciclev10016216m | scaffold_2 | 6611813 | 6619116 | C_unshiu_00072:mRNA_53.1 | C_unshiu_00072 | 416072 | 423443 | Zinc transporter ZTP29 | AGI-06 | 150.228 | |||||||||||
| Bf0161 | - | - | - | - | - | - | SI089,SI348 | Ciclev10015189m | scaffold_2 | 6658003 | 6660691 | C_unshiu_00072:mRNA_47.1 | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
| Fb0478 | - | - | - | - | - | - | Ciclev10008010m | scaffold_1 | 14592248 | 14596429 | C_unshiu_00071:mRNA_18.1 | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
| Al0647 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016069m | scaffold_2 | 32640743 | 32643349 | C_unshiu_00070:mRNA_53.1 | C_unshiu_00070 | 403765 | 406305 | Nitric oxide synthase-interacting protein homolog | AGI-06 | KmG-06 | 46.877 | |||||||||
| Lp0140 | MDisagree by Marco analysis | O | - | - | - | - | - | Ciclev10016399m | scaffold_2 | 32629908 | 32634194 | C_unshiu_00070:mRNA_52.1 | C_unshiu_00070 | 393864 | 397918 | Universal stress protein A-like protein | KmG-02 | 12.229 | JtR-02 | 2.765 | RP-02 | 8.172 | ||||||
| Al0309 | AAvailable marker | O | - | - | - | - | O | Ciclev10022019m | scaffold_3 | 44900059 | 44900865 | C_unshiu_00069:mRNA_47.1 | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
| Al0614 | - | - | - | - | - | - | Ciclev10022348m | scaffold_3 | 44987719 | 44991534 | C_unshiu_00069:mRNA_32.1 | C_unshiu_00069 | 220620 | 224375 | Methyl-CpG-binding domain 4 | AGI-05 | 56.788 | KmG-06 | 35.565 | |||||||||
| Mf0041 | AAvailable marker | - | - | - | - | O | O | Ciclev10022012m | scaffold_3 | 45076821 | 45080633 | C_unshiu_00069:mRNA_16.1 | C_unshiu_00069 | 123654 | 127483 | Histidine-containing phosphotransfer protein 1 | AGI-05 | 56.534 | KmG-05S | 73.977 | JtR-05 | 38.393 | ||||||
| Mf0073 | HDisagree on Clementine haploid genotype | - | - | - | - | - | - | C_unshiu_00069:mRNA_5.1 | C_unshiu_00069 | 25589 | 28375 | Hypothetical protein | JtR-05 | 38.749 | NAT-05 | 44.567 | ||||||||||||
| Tf0455 | OOthers | O | - | - | - | - | - | Ciclev10017004m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
| Tf0042.2 | AAvailable marker | O | - | - | - | - | O | Ciclev10016820m | scaffold_2 | 9338651 | 9341271 | C_unshiu_00067:mRNA_10.1 | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | ||||||||||||
| Cp1880 | AAvailable marker | - | - | - | - | - | O | Ciclev10016235m | scaffold_2 | 9351630 | 9354621 | C_unshiu_00067:mRNA_9.1 | C_unshiu_00067 | 71252 | 74672 | Peptide deformylase | ||||||||||||
| Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | Ciclev10009756m | scaffold_1 | 25592494 | 25593617 | C_unshiu_00066:mRNA_75.1 | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
| Af1084 | - | - | - | - | - | - | Ciclev10008467m | scaffold_1 | 25716862 | 25720071 | C_unshiu_00066:mRNA_57.1 | C_unshiu_00066 | 369928 | 382143 | Hypothetical protein | AGI-01 | 24.643 | |||||||||||
| Ov0319 | - | - | - | - | - | - | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | KmG-032 | 19.158 | |||||||||||
| Af1094 | - | - | - | - | - | - | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | AGI-01 | 30.175 | |||||||||||
| Cp1998 | AAvailable marker | - | - | - | - | - | O | Ciclev10009395m | scaffold_1 | 25761570 | 25764926 | C_unshiu_00066:mRNA_53.1 | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | ||||||||||||
| Lp0211 | O | - | - | - | - | - | Ciclev10009567m | scaffold_1 | 25816949 | 25818472 | C_unshiu_00066:mRNA_48.1 | C_unshiu_00066 | 279404 | 280861 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 | AGI-01 | 30.175 | RP-01 | 24.533 | |||||||||
| Lp0237 | Lp0237.k | - | - | - | - | - | - | Ciclev10007524m | scaffold_1 | 25987803 | 25992258 | C_unshiu_00066:mRNA_23.1 | C_unshiu_00066 | 112710 | 117006 | Pyrophosphate-energized vacuolar membrane proton pump | AGI-01 | 29.815 | KmG-01 | 13.444 | JtR-01S | 57.629 | NAT-01S | 8.967 | ||||
| Al0601 | - | - | - | - | - | - | C_unshiu_00065:mRNA_8.1 | C_unshiu_00065 | 39268 | 43421 | Probable GTP diphosphokinase RSH2, chloroplastic | AGI-08 | 93.624 | |||||||||||||||
| Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | Ciclev10004620m | scaffold_9 | 7579900 | 7583093 | C_unshiu_00063:mRNA_61.1 | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
| Cp1044 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10015927m | scaffold_2 | 4354278 | 4358516 | C_unshiu_00062:mRNA_38.1 | C_unshiu_00062 | 326045 | 332995 | Iron-sulfur cluster formation ABC transporter ATP-binding subunit | AGI-07 | 39.420 | ||||||||||
| Cp0233 | - | - | - | - | - | - | Ciclev10031694m | scaffold_4 | 11210879 | 11216325 | C_unshiu_00061:mRNA_64.1 | C_unshiu_00061 | 550725 | 556167 | Ribose-phosphate pyrophosphokinase 4 | AGI-07 | 37.826 | |||||||||||
| Af1629 | - | - | - | - | - | - | Ciclev10012332m | scaffold_6 | 2969527 | 2973147 | C_unshiu_00060:mRNA_62.1 | C_unshiu_00060 | 539807 | 543307 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | AGI-07 | 39.420 | |||||||||||
| Af1437 | - | - | - | - | - | - | Ciclev10002114m | scaffold_5 | 1474396 | 1479079 | C_unshiu_00060:mRNA_37.1 | C_unshiu_00060 | 309328 | 313345 | Short-chain alcohol dehydrogenase | AGI-09 | 92.804 | |||||||||||
| Af1037 | - | - | - | - | - | - | Ciclev10032461m | scaffold_4 | 1969590 | 1972842 | C_unshiu_00058:mRNA_65.1 | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
| Bf0109 | - | - | - | - | - | - | SI233 | Ciclev10032461m | scaffold_4 | 1970129 | 1972842 | C_unshiu_00058:mRNA_65.1 | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | RP-07 | 51.394 | ||||||||||
| Bf0402 | - | - | - | - | - | - | Ciclev10020232m | scaffold_3 | 9137249 | 9144663 | C_unshiu_00058:mRNA_19.1 | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
| Cp0018 | - | - | - | - | - | - | Ciclev10005068m | scaffold_9 | 5605470 | 5610840 | C_unshiu_00057:mRNA_49.1 | C_unshiu_00057 | 415460 | 428173 | Putative E3 ubiquitin-protein ligase HERC1 | AGI-03 | 44.848 | |||||||||||
| Bf0004 | - | - | - | - | - | - | SI273 | Ciclev10005212m | scaffold_9 | 29563003 | 29568705 | C_unshiu_00056:mRNA_33.1 | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
| Af1513 | - | - | - | - | - | - | Ciclev10006024m | scaffold_9 | 29523786 | 29526379 | C_unshiu_00056:mRNA_24.1 | C_unshiu_00056 | 181282 | 183151 | 40S ribosomal protein S10 | AGI-03 | 63.545 | |||||||||||
| Gn0014.2 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | Ciclev10005481m | scaffold_9 | 29488658 | 29491181 | C_unshiu_00056:mRNA_20.1 | C_unshiu_00056 | 144107 | 146527 | Beta-carotene hydroxylase 1 | ||||||||||||
| Ks9010 | AAvailable marker | - | - | - | - | O | O | Ciclev10007188m | scaffold_9 | 29460866 | 29463385 | C_unshiu_00056:mRNA_15.1 | C_unshiu_00056 | 116304 | 118823 | Receptor-like protein kinase HERK 1 | AGI-04 | 62.499 | KmG-04 | 39.019 | ||||||||
| Cp0741 | AAvailable marker | O | - | - | - | O | O | Ciclev10008230m | scaffold_1 | 3746864 | 3749903 | C_unshiu_00055:mRNA_22.1 | C_unshiu_00055 | 168281 | 172005 | Ferrochelatase | AGI-01 | 75.964 | ||||||||||
| Al0008 | - | - | - | - | - | - | Ciclev10001908m | scaffold_5 | 40317721 | 40321609 | C_unshiu_00054:mRNA_1.1 | C_unshiu_00054 | 5765 | 8674 | 26S proteasome non-ATPase regulatory subunit 14 | SA-09 | 50.699 | |||||||||||
| Mf0058 | T3 or more alleleic model | - | - | - | - | - | - | Ciclev10022378m | scaffold_3 | 46818817 | 46822856 | C_unshiu_00053:mRNA_58.1 | C_unshiu_00053 | 481338 | 485184 | Nitrogen regulatory protein P-II | AGI-08 | 57.196 | JtR-05 | 39.516 | ||||||||
| Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | Ciclev10022482m | scaffold_3 | 46814909 | 46817474 | C_unshiu_00053:mRNA_57.3 | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
| Af1332 | - | - | - | - | - | - | Ciclev10013051m | scaffold_6 | 20834427 | 20836151 | C_unshiu_00052:mRNA_57.1 | C_unshiu_00052 | 455959 | 457684 | 60S acidic ribosomal protein | AGI-04 | ||||||||||||
| Lp0206 | O | - | - | - | - | - | Ciclev10011764m | scaffold_6 | 20836509 | 20840107 | C_unshiu_00052:mRNA_56.1 | C_unshiu_00052 | 452105 | 455631 | Monodehydroascorbate reductase | AGI-04 | 58.655 | |||||||||||
| Al0514 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | KmG-04 | 32.217 | ||||||||||
| If0210 | - | - | - | - | - | - | SI042 | Ciclev10012145m | scaffold_6 | 21035910 | 21038368 | C_unshiu_00052:mRNA_38.1 | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
| Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | Ciclev10012056m | scaffold_6 | 21137783 | 21142157 | C_unshiu_00052:mRNA_27.2 | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
| Wy0029 | - | - | - | - | - | - | Ciclev10012640m | scaffold_6 | 21145703 | 21148279 | C_unshiu_00052:mRNA_26.1 | C_unshiu_00052 | 161014 | 162179 | Type II peroxiredoxin | AGI-04 | ||||||||||||
| Fb1227 | - | - | - | - | - | - | Ciclev10004375m | scaffold_9 | 3367718 | 3376062 | C_unshiu_00051:mRNA_60.1 | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
| Lp0202 | O | - | - | - | - | - | Ciclev10006509m | scaffold_9 | 3131006 | 3134438 | C_unshiu_00051:mRNA_31.2 | C_unshiu_00051 | 239802 | 243699 | NEDD8-activating enzyme E1 catalytic subunit | AGI-03 | 23.085 | |||||||||||
| Cp1925 | AAvailable marker | - | - | - | - | O | O | Ciclev10005182m | scaffold_9 | 3115971 | 3120271 | C_unshiu_00051:mRNA_29.1 | C_unshiu_00051 | 224928 | 229203 | YjeF family domain-containing protein | AGI-03 | 24.457 | ||||||||||
| Bf0128 | O | - | - | - | - | - | Ciclev10025298m | scaffold_7 | 3323269 | 3331038 | C_unshiu_00051:mRNA_2.2 | C_unshiu_00051 | 25872 | 40163 | Hypothetical protein | AGI-02 | 70.082 | NAT-02S | 77.157 | RP-02.2 | 9.835 | |||||||
| Tf0130 | - | - | - | - | - | - | Ciclev10001027m | scaffold_5 | 19740133 | 19745806 | C_unshiu_00050:mRNA_15.1 | C_unshiu_00050 | 195528 | 200204 | Transcription factor GAMYB | AGI-09 | 103.217 | |||||||||||
| Tf0166 | - | - | - | - | - | - | SI156 | Ciclev10000524m | scaffold_5 | 19682579 | 19686163 | C_unshiu_00050:mRNA_13.1 | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
| Cp0077 | O | - | - | - | - | - | Ciclev10015497m | scaffold_2 | 9849133 | 9852098 | C_unshiu_00049:mRNA_29.1 | C_unshiu_00049 | 210181 | 212829 | Altered inheritance of mitochondria protein 32 | AGI-08 | 54.867 | |||||||||||
| Af1580 | - | - | - | - | - | - | Ciclev10016368m | scaffold_2 | 35013848 | 35015439 | C_unshiu_00048:mRNA_76.1 | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
| Ov0325 | - | - | - | - | - | - | Ciclev10016692m | scaffold_2 | 35180594 | 35182774 | C_unshiu_00048:mRNA_54.1 | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
| Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | Ciclev10015483m | scaffold_2 | 35212691 | 35214865 | C_unshiu_00048:mRNA_50.1 | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
| Bf0110 | - | - | - | - | - | - | SI297 | Ciclev10014639m | scaffold_2 | 35235517 | 35237892 | C_unshiu_00048:mRNA_48.1 | C_unshiu_00048 | 306412 | 308620 | 9-cis-epoxycarotenoid dioxygenase 1 | ||||||||||||
| Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | Ciclev10014319m | scaffold_2 | 35354776 | 35363026 | C_unshiu_00048:mRNA_32.1 | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
| Cp0384 | AAvailable marker | O | - | - | - | O | O | Ciclev10015162m | scaffold_2 | 35422598 | 35425980 | C_unshiu_00048:mRNA_23.2 | C_unshiu_00048 | 111764 | 114820 | APS reductase | AGI-06 | 19.002 | ||||||||||
| If0003 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI130 | Ciclev10015433m | scaffold_2 | 35470078 | 35472862 | C_unshiu_00048:mRNA_13.1 | C_unshiu_00048 | 64652 | 67377 | Aminomethyltransferase | AGI-06 | 18.136 | JtR-06S | 67.371 | |||||||
| Ks9001 | - | - | - | - | - | - | Ciclev10008207m | scaffold_1 | 24548109 | 24552107 | C_unshiu_00047:mRNA_72.1 | C_unshiu_00047 | 475125 | 488565 | Inter-alpha-trypsin inhibitor heavy chain-related isoform 1 | AGI-01 | 27.192 | JtR-01S | 61.287 | |||||||||
| Tf0049 | - | - | - | - | - | - | SI328 | Ciclev10008919m | scaffold_1 | 24273993 | 24277800 | C_unshiu_00047:mRNA_33.1 | C_unshiu_00047 | 212549 | 221653 | WD domain protein-like | AGI-01 | 26.841 | ||||||||||
| Af1467 | - | - | - | - | - | - | Ciclev10008651m | scaffold_1 | 24171632 | 24175378 | C_unshiu_00047:mRNA_19.1 | C_unshiu_00047 | 116658 | 120038 | Putative amino acid permease 7 | AGI-01 | 29.784 | |||||||||||
| If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | C_unshiu_00046:mRNA_66.1 | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
| Cp0813 | - | - | - | - | - | - | SI047 | Ciclev10011980m | scaffold_6 | 20638049 | 20641557 | C_unshiu_00046:mRNA_46.1 | C_unshiu_00046 | 406041 | 409549 | Alpha/beta fold hydrolase | AGI-04 | 58.655 | ||||||||||
| Af1638 | - | - | - | - | - | - | Ciclev10004755m | scaffold_9 | 28984972 | 28989373 | C_unshiu_00045:mRNA_79.1 | C_unshiu_00045 | 556440 | 562091 | Tubulin | AGI-03 | 34.554 | |||||||||||
| Ks9011 | AAvailable marker | - | - | - | - | - | O | Ciclev10004755m | scaffold_9 | 28984972 | 28989373 | C_unshiu_00045:mRNA_79.1 | C_unshiu_00045 | 556440 | 562091 | Tubulin | JtR-032 | |||||||||||
| Al0628 | - | - | - | - | - | - | Ciclev10004696m | scaffold_9 | 28974337 | 28977865 | C_unshiu_00045:mRNA_76.1 | C_unshiu_00045 | 547196 | 550605 | O-glucosyltransferase rumi like | KmG-031 | 5.650 | |||||||||||
| Tf0072 | - | - | - | - | - | - | Ciclev10005403m | scaffold_9 | 28757274 | 28759075 | C_unshiu_00045:mRNA_48.1 | C_unshiu_00045 | 372168 | 373811 | Heat stress transcription factor B-4 | AGI-03 | 35.962 | |||||||||||
| Tf0074 | O | - | - | - | - | - | Ciclev10005366m | scaffold_9 | 28444512 | 28446074 | C_unshiu_00045:mRNA_7.1 | C_unshiu_00045 | 62608 | 63842 | TCP family transcription factor | AGI-03 | 37.816 | |||||||||||
| Mf0007 | ULess informative for main cultivars | - | - | - | - | - | - | Ciclev10008907m | scaffold_1 | 17471330 | 17472833 | C_unshiu_00044:mRNA_52.1 | C_unshiu_00044 | 424343 | 425685 | NADPH-dependent codeinone reductase-like protein | ||||||||||||
| Wy0048 | Wy0048.k | - | - | - | - | - | - | Ciclev10010999m | scaffold_6 | 19900235 | 19904192 | C_unshiu_00043:mRNA_54.1 | C_unshiu_00043 | 424252 | 427984 | Putative receptor protein kinase TMK1 | AGI-04 | 63.371 | NAT-04 | 21.157 | ||||||||
| Em0003 | - | - | - | - | - | - | Ciclev10011201m | scaffold_6 | 19840881 | 19844299 | C_unshiu_00043:mRNA_48.1 | C_unshiu_00043 | 360776 | 363775 | BEL1-like homeodomain protein 1 | AGI-08 | 56.724 | |||||||||||
| Gn0066.2 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | Ciclev10011230m | scaffold_6 | 19578179 | 19583475 | C_unshiu_00043:mRNA_12.1 | C_unshiu_00043 | 90212 | 94791 | Carotenoid isomerase | AGI-04 | |||||||||||
| Fb0372 | - | - | - | - | - | - | SI343,SI052 | Ciclev10002666m | scaffold_5 | 35123213 | 35124730 | C_unshiu_00042:mRNA_34.1 | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
| Tf0356 | - | - | - | - | - | - | SI134,SI160 | Ciclev10029063m | scaffold_8 | 998289 | 1001763 | C_unshiu_00041:mRNA_95.3 | C_unshiu_00041 | 588335 | 591780 | Basic-leucine zipper (BZIP) transcription factor family | AGI-08 | 83.743 | ||||||||||
| Cp1697 | AAvailable marker | - | - | - | - | O | O | Ciclev10028645m | scaffold_8 | 966124 | 968846 | C_unshiu_00041:mRNA_89.1 | C_unshiu_00041 | 555334 | 558046 | Urease accessory protein UreH | AGI-02 | 73.770 | ||||||||||
| Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | Ciclev10004660m | scaffold_9 | 2732900 | 2738896 | C_unshiu_00040:mRNA_76.1 | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
| Vt0028 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | AGI-07 | 51.998 | KmG-07 | 44.183 | JtR-07 | 39.088 | |||||||
| Ks9013 | - | - | - | - | - | - | Ciclev10032489m | scaffold_4 | 18947498 | 18950949 | C_unshiu_00039:mRNA_34.1 | C_unshiu_00039 | 255025 | 269908 | Hypothetical protein | KmG-07 | 45.284 | JtR-07 | 39.119 | |||||||||
| Tf0213 | OOthers | O | - | - | - | - | - | Ciclev10030571m | scaffold_4 | 18839546 | 18848948 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
| Tf0251 | - | - | - | - | - | - | SI005 | C_unshiu_00039:mRNA_19.1 | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | ||||||||||||||||
| Fb0225 | - | - | - | - | - | - | Ciclev10008570m | scaffold_1 | 4873970 | 4878979 | C_unshiu_00039:mRNA_6.1 | C_unshiu_00039 | 54980 | 59746 | Protein arginine N-methyltransferase 1 | RP-05 | 33.168 | |||||||||||
| Af1059 | - | - | - | - | - | - | Ciclev10011827m | scaffold_6 | 23066384 | 23072168 | C_unshiu_00038:mRNA_98.1 | C_unshiu_00038 | 554982 | 560549 | Plastidic glucose transporter 4 | AGI-04 | 44.840 | |||||||||||
| Af1600 | - | - | - | - | - | - | Ciclev10013134m | scaffold_6 | 22758027 | 22760875 | C_unshiu_00038:mRNA_51.4 | C_unshiu_00038 | 305110 | 307864 | Negatively light-regulated protein | AGI-04 | 5.122 | |||||||||||
| Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | Ciclev10013536m | scaffold_6 | 22616979 | 22619271 | C_unshiu_00038:mRNA_27.1 | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
| Bf0008 | - | - | - | - | - | - | SI309 | Ciclev10012950m | scaffold_6 | 22467565 | 22470029 | C_unshiu_00038:mRNA_5.1 | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
| Lp0133 | AtAvailable marker | O | - | - | - | O | O | Ciclev10021187m | scaffold_3 | 39657613 | 39660222 | C_unshiu_00037:mRNA_84.1 | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
| Fb2159 | - | - | - | - | - | - | SI205,SI300 | Ciclev10021136m | scaffold_3 | 39606431 | 39608387 | C_unshiu_00037:mRNA_76.1 | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
| Tf0373 | - | - | - | - | - | - | SI088 | Ciclev10011502m | scaffold_6 | 21229813 | 21233537 | C_unshiu_00037:mRNA_60.1 | C_unshiu_00037 | 387538 | 391239 | Uridylate kinase, putative | AGI-04 | 61.716 | ||||||||||
| Gmom19 | - | - | - | - | - | - | Ciclev10011554m | scaffold_6 | 21450811 | 21454133 | C_unshiu_00037:mRNA_27.1 | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
| Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | Ciclev10011842m | scaffold_6 | 21598429 | 21600967 | C_unshiu_00037:mRNA_7.2 | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
| Mf0047 | DDominant marker | - | - | - | - | - | - | Ciclev10006308m | scaffold_9 | 1685407 | 1687081 | C_unshiu_00036:mRNA_24.2 | C_unshiu_00036 | 126753 | 128428 | Late embryogenesis abundant protein Lea5-D | AGI-03 | 14.323 | KmG-031 | 7.139 | NAT-03 | 50.708 | ||||||
| If0206 | DDominant marker | - | - | - | - | - | - | SI208 | Ciclev10012955m | scaffold_6 | 15192652 | 15194091 | C_unshiu_00034:mRNA_78.1 | C_unshiu_00034 | 662958 | 664402 | Universal stress protein A-like protein | |||||||||||
| Wy0062 | Wy0062.em | - | - | - | - | - | - | Ciclev10011305m | scaffold_6 | 15214969 | 15222324 | C_unshiu_00034:mRNA_76.1 | C_unshiu_00034 | 634791 | 641934 | Peptidyl-prolyl cis-trans isomerase PASTICCINO1 | AGI-02 | 78.531 | ||||||||||
| Fb0373 | O | - | - | - | - | - | Ciclev10000030m | scaffold_5 | 6404463 | 6435349 | C_unshiu_00034:mRNA_15.1 | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
| Tf0304 | - | - | - | - | - | - | Ciclev10000491m | scaffold_5 | 953167 | 960232 | C_unshiu_00033:mRNA_32.1 | C_unshiu_00033 | 311804 | 317751 | Auxin response factor | AGI-09 | 113.306 | |||||||||||
| Ov0111 | AAvailable marker | - | - | - | - | O | O | Ciclev10000069m | scaffold_5 | 8532280 | 8539677 | C_unshiu_00033:mRNA_6.1 | C_unshiu_00033 | 57678 | 65071 | TSA: Wollemia nobilis transcribed RNA sequence | AGI-09 | 85.810 | KmG-09 | 11.923 | JtR-09S | 6.157 | RP-09 | 20.238 | ||||
| Fb0110 | O | - | - | - | - | - | SI246 | Ciclev10000900m | scaffold_5 | 8512380 | 8517835 | C_unshiu_00033:mRNA_4.1 | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
| Al0501 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | Ciclev10012221m | scaffold_6 | 14625884 | 14628443 | C_unshiu_00032:mRNA_48.1 | C_unshiu_00032 | 462609 | 490932 | Tropinone reductase I | ||||||||||||
| Al0422 | T3 or more alleleic model | O | - | - | - | - | - | Ciclev10013176m | scaffold_6 | 14495473 | 14496662 | C_unshiu_00032:mRNA_34.1 | C_unshiu_00032 | 369423 | 370581 | Subtilisin inhibitor 1, putative | AGI-08 | 93.695 | ||||||||||
| Af1086 | - | - | - | - | - | - | Ciclev10031563m | scaffold_4 | 10510018 | 10517939 | C_unshiu_00028:mRNA_1.2 | C_unshiu_00028 | 4115 | 12036 | AP-2 complex subunit mu | AGI-05 | 41.306 | |||||||||||