Citrus CAPS Marker Database


Locus info		Cultivar Idenification							SNP info	Target on C. clementina (v1.0)				Target on C. unshiu (v1.0)					AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. )		KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. )		Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 )		Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. )
Locus name ▲▼	Locus name alias ▲▼	Rank hybrid cultivar ▲▼	Citrus collection O -	Cultivar identifi- cation manual O -	Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O -	Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O -	Graphical map O -	Genotype O -	Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Transcript ID ▲▼	Scaffold ▲▼	Start	End	Gene function ▲▼	AGI LG ▲▼	AGI cM	KmMg LG ▲▼	KmMg cM	JtTr LG ▲▼	JtTr cM	Km/O41 LG ▲▼	Km/O41 cM	Rp/Sa LG ▲▼	Rp/Sa cM
Wy0100			-	-	-	-	-	-		Ciclev10018814m	scaffold_3	688264	692703
Wy0066	Wy0066.em		-	-	-	-	-	-		Ciclev10001670m	scaffold_5	42589392	42594049
Wy0065	Wy0065.em		O	-	-	-	-	-
Wy0064	Wy0064.em		-	-	-	-	-	-		Ciclev10021336m	scaffold_3	29395094	29402560	C_unshiu_00549:mRNA_8.1	C_unshiu_00549	83149	90542	Splicing regulatory glutamine/lysine-rich protein 1
Wy0063	Wy0063.em		-	-	-	-	-	-		Ciclev10021336m	scaffold_3	29395094	29402560	C_unshiu_00549:mRNA_8.1	C_unshiu_00549	83149	90542	Splicing regulatory glutamine/lysine-rich protein 1	AGI-01	33.445
Wy0062	Wy0062.em		-	-	-	-	-	-		Ciclev10011305m	scaffold_6	15214969	15222324	C_unshiu_00034:mRNA_76.1	C_unshiu_00034	634791	641934	Peptidyl-prolyl cis-trans isomerase PASTICCINO1	AGI-02	78.531
Wy0061	Wy0061.em		-	-	-	-	-	-
Wy0060	Wy0060.em		-	-	-	-	-	-		Ciclev10020776m	scaffold_3	46998745	47002683	C_unshiu_00023:mRNA_2.1	C_unshiu_00023	7129	11067	Pto kinase interactor 1	AGI-02	14.597
Wy0059	Wy0059.em		-	-	-	-	-	-		Ciclev10012904m	scaffold_6	8562431	8564865	C_unshiu_00232:mRNA_33.1	C_unshiu_00232	292640	294683	DUF538 family protein	AGI-08	91.502
Wy0058	Wy0058.em		-	-	-	-	-	-		Ciclev10016274m	scaffold_2	29140509	29143804	C_unshiu_00022:mRNA_58.1	C_unshiu_00022	424974	428249	Plastid ribosomal protein L15
Wy0057	Wy0057.em		-	-	-	-	-	-		Ciclev10008812m	scaffold_1	18270818	18273015
Wy0056	Wy0056.em	AAvailable marker	-	-	-	-	O	O		Ciclev10014198m	scaffold_2	31740431	31747095	C_unshiu_00027:mRNA_81.1	C_unshiu_00027	521555	527308	Auxin response factor	AGI-06	36.788
Wy0055	Wy0055.em		-	-	-	-	-	-						C_unshiu_00005:mRNA_81.1	C_unshiu_00005	686926	696896	Neurochondrin	AGI-01	118.691
Wy0054	Wy0054.em		-	-	-	-	-	-		Ciclev10018486m	scaffold_3	5585142	5593506
Wy0053	Wy0053.k		-	-	-	-	-	-		Ciclev10017466m	scaffold_2	27579627	27581411
Wy0052	Wy0052.k		-	-	-	-	-	-
Wy0051	Wy0051.k		-	-	-	-	-	-		Ciclev10001849m	scaffold_5	39325976	39327488
Wy0050	Wy0050.k		-	-	-	-	-	-		Ciclev10005669m	scaffold_9	28556663	28560571
Wy0049	Wy0049.k		-	-	-	-	-	-		Ciclev10015338m	scaffold_2	290799	294122
Wy0048	Wy0048.k		-	-	-	-	-	-		Ciclev10010999m	scaffold_6	19900235	19904192	C_unshiu_00043:mRNA_54.1	C_unshiu_00043	424252	427984	Putative receptor protein kinase TMK1	AGI-04	63.371					NAT-04	21.157
Wy0047	Wy0047.k		-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0046	Wy0046.k		-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Wy0045	Wy0045.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326	C_unshiu_02764:mRNA_1.1	C_unshiu_02764	1529	2654	Geraniol 10-hydroxylase-like protein	AGI-08	56.724
Wy0044.3			-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875	C_unshiu_00126:mRNA_45.1	C_unshiu_00126	300225	314275	Hypothetical protein									RP-05	49.102
Wy0044.2			-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0044	Wy0044.k		-	-	-	-	-	-		Ciclev10020328m	scaffold_3	49621665	49623875
Wy0043	Wy0043.k		-	-	-	-	-	-
Wy0042	Wy0042.k		-	-	-	-	-	-		Ciclev10028268m	scaffold_8	9564698	9566326
Wy0041			-	-	-	-	-	-		Ciclev10025903m	scaffold_7	1295839	1297378	C_unshiu_00218:mRNA_18.1	C_unshiu_00218	93074	94183	GDP-mannose 4,6 dehydratase 2	AGI-02	75.406
Wy0040		AAvailable marker	O	-	-	-	-	O		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00001:mRNA_217.1	C_unshiu_00001	1378378	1380557	Hypothetical protein			KmG-04	12.855
Wy0039		AAvailable marker	-	-	-	-	O	O		Ciclev10028965m	scaffold_8	18824262	18825514	C_unshiu_00459:mRNA_4.1	C_unshiu_00459	34475	34918	Hypothetical protein	AGI-08	45.276			JtR-08	16.276
Wy0038			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Wy0037			-	-	-	-	-	-		Ciclev10016309m	scaffold_2	28046592	28048907
Wy0036			-	-	-	-	-	-		Ciclev10004868m	scaffold_9	17114361	17116036
Wy0035		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10014857m	scaffold_2	31148849	31150616	C_unshiu_00292:mRNA_13.1	C_unshiu_00292	110620	112650	FAD-binding Berberine family protein	AGI-06	36.863
Wy0034			-	-	-	-	-	-	SI367	Ciclev10026310m	scaffold_7	2299638	2302863	C_unshiu_00025:mRNA_32.1	C_unshiu_00025	269762	270443	Flavoprotein wrbA
Wy0033			-	-	-	-	-	-		Ciclev10011317m	scaffold_6	16709179	16712039
Wy0032		OOthers	O	-	-	-	O	O		Ciclev10005365m	scaffold_9	10357084	10359834	C_unshiu_00367:mRNA_10.1	C_unshiu_00367	100255	102997	Male sterility MS5 family protein	AGI-03	46.121	KmG-032	14.572	JtR-031	12.840
Wy0031			-	-	-	-	-	-		Ciclev10002698m	scaffold_5	42326135	42327438
Wy0030		AAvailable marker	O	-	-	-	O	O		Ciclev10001854m	scaffold_5	36229310	36230518	C_unshiu_00619:mRNA_10.1	C_unshiu_00619	87213	88404	EXORDIUM like 2	AGI-09	53.205	KmG-09	44.154	JtR-09S	63.577	NAT-09	65.585
Wy0029			-	-	-	-	-	-		Ciclev10012640m	scaffold_6	21145703	21148279	C_unshiu_00052:mRNA_26.1	C_unshiu_00052	161014	162179	Type II peroxiredoxin	AGI-04
Wy0028		AAvailable marker	-	-	-	-	O	O		Ciclev10007806m	scaffold_1	25001341	25004726	C_unshiu_00150:mRNA_3.1	C_unshiu_00150	18652	22079	Probable pectinesterase/pectinesterase inhibitor 61	AGI-01	26.171	KmG-01
Wy0027			-	-	-	-	-	-		Ciclev10011949m	scaffold_6	18896261	18902614
Wy0026		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10010857m	scaffold_1	28321342	28323314	C_unshiu_02224:mRNA_5.1	C_unshiu_02224	30176	31684	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase	AGI-01	35.518
Wy0025.2	Wy0025.em		-	-	-	-	-	-		Ciclev10032547m	scaffold_4	24434005	24435526
Wy0025			-	-	-	-	-	-	SI004	Ciclev10032547m	scaffold_4	24434005	24435526	C_unshiu_00001:mRNA_229.1	C_unshiu_00001	1446446	1447952	NAC domain-containing protein 29
Wy0024			-	-	-	-	-	-		Ciclev10002554m	scaffold_5	21581031	21583751
Wy0023			-	-	-	-	-	-	SI037	Ciclev10025834m	scaffold_7	70855	73880	C_unshiu_00706:mRNA_12.1	C_unshiu_00706	76103	78923	Thioredoxin-disulfide reductase
Wy0022			-	-	-	-	-	-		Ciclev10032739m	scaffold_4	24914068	24915637
Wy0021			-	-	-	-	-	-		Ciclev10013675m	scaffold_6	7079176	7087001
Wy0020			-	-	-	-	-	-	SI007	Ciclev10005394m	scaffold_9	5549195	5553148	C_unshiu_00164:mRNA_5.1	C_unshiu_00164	17046	20923	Malate dehydrogenase	AGI-03	43.563
Wy0019			-	-	-	-	-	-	SI031	Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2
Wy0018		AAvailable marker	-	-	-	-	O	O		Ciclev10021374m	scaffold_3	5318874	5321054	C_unshiu_00442:mRNA_14.1	C_unshiu_00442	123398	125451	Homeobox-leucine zipper protein HAT3	AGI-05	29.033	KmG-05S	20.128	JtR-05	19.008
Wy0017			-	-	-	-	-	-		Ciclev10001019m	scaffold_5	38559099	38562819
Wy0016			-	-	-	-	-	-	SI068	Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_01309:mRNA_6.1	C_unshiu_01309	21942	23382	UDP-glycosyltransferase 71B1			KmG-04	47.990
Wy0015			O	-	-	-	-	-	SI041	Ciclev10028465m	scaffold_8	13101257	13103161	C_unshiu_02878:mRNA_1.1	C_unshiu_02878	9199	10715	UDP-glycosyltransferase 73C5	AGI-08	56.724
Wy0014			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Wy0013			-	-	-	-	-	-		Ciclev10021105m	scaffold_3	38229221	38232245
Wy0012			O	-	-	-	-	O		Ciclev10004385m	scaffold_9	4888531	4892972	C_unshiu_00386:mRNA_17.1	C_unshiu_00386	142436	145911	Ethylene receptor			KmG-032	11.250	JtR-031	4.898	NAT-03	11.970
Wy0011		OOthers	O	-	-	-	-	-	SI091	Ciclev10032364m	scaffold_4	24417602	24419019	C_unshiu_00001:mRNA_226.1	C_unshiu_00001	1429943	1431279	Enoyl CoA hydratase/isomerase	AGI-07	86.288
Wy0010			-	-	-	-	-	-		Ciclev10019848m	scaffold_3	9466071	9468445
Wy0009			-	-	-	-	-	-		Ciclev10022580m	scaffold_3	48621909	48624858
Wy0008		HDisagree on Clementine haploid genotype	O	-	-	-	-	-		Ciclev10009193m	scaffold_1	9297360	9299641	No					AGI-01	57.863	KmG-01	43.003	JtR-01S	99.300
Wy0007			-	-	-	-	-	-		Ciclev10025280m	scaffold_7	15456948	15460803
Wy0006			O	-	-	-	-	-		Ciclev10021901m	scaffold_3	4903592	4905871	C_unshiu_00628:mRNA_6.1	C_unshiu_00628	38419	40239	Bax inhibitor 1			KmG-05S	19.072	JtR-05	19.698	NAT-05	21.803
Wy0005		DDominant marker	O	-	-	-	-	-		Ciclev10019927m	scaffold_3	48337105	48339028	No					AGI-05	83.570	KmG-05S	122.932
Wy0004			-	-	-	-	-	-						C_unshiu_02819:mRNA_2.1	C_unshiu_02819	2728	4118	CXE carboxylesterase	AGI-08	70.463					NAT-082	65.434
Wy0003		AAvailable marker	O	-	-	-	O	O		Ciclev10001202m	scaffold_5	37189653	37192231	C_unshiu_00144:mRNA_30.1	C_unshiu_00144	215223	217733	Aminotransferase	AGI-09	46.823	KmG-09	52.581			NAT-09	69.467
Wy0002			-	-	-	-	-	-		Ciclev10022129m	scaffold_3	18472967	18473951
Wy0001			-	-	-	-	-	-		Ciclev10004473m	scaffold_9	3564877	3568051
Vt0035			-	-	-	-	-	-		Ciclev10016383m	scaffold_2	8510712	8514409
Vt0034			-	-	-	-	-	-		Ciclev10000597m	scaffold_5	39630111	39635609
Vt0033			-	-	-	-	-	-		Ciclev10016829m	scaffold_2	23695881	23697100
Vt0032			O	-	-	-	-	-	SI024	Ciclev10024737m	scaffold_7	17901487	17905433	C_unshiu_00382:mRNA_15.1	C_unshiu_00382	163577	167662	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	AGI-02	25.601							RP-02	6.081
Vt0031			-	-	-	-	-	-
Vt0030	Vt0030.k		O	-	-	-	-	-		Ciclev10024917m	scaffold_7	11271705	11277014	C_unshiu_01240:mRNA_4.1	C_unshiu_01240	27655	32960	Phospholipase D	AGI-02	12.615
Vt0029			-	-	-	-	-	-		Ciclev10031975m	scaffold_4	2451345	2454325	C_unshiu_00979:mRNA_17.1	C_unshiu_00979	79016	81937	GroES-like zinc-binding alcohol dehydrogenase family protein	AGI-07	13.238
Vt0028			-	-	-	-	-	-		Ciclev10032489m	scaffold_4	18947498	18950949	C_unshiu_00039:mRNA_34.1	C_unshiu_00039	255025	269908	Hypothetical protein	AGI-07	51.998	KmG-07	44.183	JtR-07	39.088
Vt0027			-	-	-	-	-	-		Ciclev10031408m	scaffold_4	303399	306794
Vt0026			-	-	-	-	-	-		Ciclev10024169m	scaffold_3	44691395	44694360
Vt0025			-	-	-	-	-	-		Ciclev10025308m	scaffold_7	6764664	6770188
Vt0024			-	-	-	-	-	-		Ciclev10005069m	scaffold_9	21593473	21597037
Vt0023			-	-	-	-	-	-		Ciclev10016079m	scaffold_2	8712236	8714558
Vt0022			-	-	-	-	-	-		Ciclev10006852m	scaffold_9	24201196	24203794
Vt0021			-	-	-	-	-	-		Ciclev10007296m	scaffold_1	2015894	2023323
Vt0020			-	-	-	-	-	-		Ciclev10032461m	scaffold_4	1970129	1972842
Vt0019			-	-	-	-	-	-		Ciclev10002927m	scaffold_5	41913536	41914321
Vt0018			-	-	-	-	-	-		Ciclev10016206m	scaffold_2	22471208	22474774
Vt0017			-	-	-	-	-	-		Ciclev10031431m	scaffold_4	23705523	23709604
Vt0016			-	-	-	-	-	-		Ciclev10011403m	scaffold_6	17974828	17979364
Vt0015			-	-	-	-	-	-		Ciclev10025952m	scaffold_7	2441452	2443391	C_unshiu_00025:mRNA_49.1	C_unshiu_00025	381829	383760	Hexosyltransferase	AGI-02	70.082	KmG-02	67.054	JtR-02	21.082
Vt0014			-	-	-	-	-	-		Ciclev10029694m	scaffold_8	21102979	21105476
Vt0013			-	-	-	-	-	-		Ciclev10008981m	scaffold_1	13123280	13126173
Vt0012			-	-	-	-	-	-		Ciclev10007708m	scaffold_1	1806179	1809814
Vt0011		AAvailable marker	-	-	-	-	O	O		Ciclev10021162m	scaffold_3	12984411	12986574	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-05	41.306			JtR-05	37.780
Vt0010			-	-	-	-	-	-		Ciclev10020141m	scaffold_3	48560245	48562027
Vt0009			-	-	-	-	-	-		Ciclev10012382m	scaffold_6	24932481	24935909	C_unshiu_00135:mRNA_6.1	C_unshiu_00135	25891	28913	Major intrinsic protein (MIP) family transporter	AGI-04	38.770	KmG-04	14.707
Vt0008			-	-	-	-	-	-		Ciclev10019736m	scaffold_3	49256390	49259083
Vt0007			-	-	-	-	-	-		Ciclev10019734m	scaffold_3	49821906	49825730
Vt0006			-	-	-	-	-	-		Ciclev10010149m	scaffold_1	24914885	24923422
Vt0005			-	-	-	-	-	-		Ciclev10001888m	scaffold_5	36449346	36452178
Vt0004			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Vt0003			-	-	-	-	-	-		Ciclev10027667m	scaffold_8	8153660	8174407	C_unshiu_00616:mRNA_3.1	C_unshiu_00616	10808	18470	Hypothetical protein	AGI-08	56.724
Vt0002			-	-	-	-	-	-		Ciclev10032270m	scaffold_4	20868750	20872170
Vt0001		AAvailable marker	-	-	-	-	O	O		Ciclev10014290m	scaffold_2	35624935	35628855	C_unshiu_00337:mRNA_2.1	C_unshiu_00337	2684	6536	Subtilase family protein	AGI-06	16.327	KmG-06	68.041
Vs0018			-	-	-	-	-	-		Ciclev10026149m	scaffold_7	4612887	4617115
Vs0017			-	-	-	-	-	-		Ciclev10009470m	scaffold_1	6647158	6649599
Vs0016		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_02110:mRNA_3.2	C_unshiu_02110	27660	28723	Metallothionein	AGI-05	25.980	KmG-08	17.483	JtR-08
Vs0015		OOthers	-	-	-	-	-	-						C_unshiu_00001:mRNA_84.1	C_unshiu_00001	561308	564986	Mitochondrial outer membrane protein porin of 34 kDa	AGI-09	115.452	KmG-09	34.185	JtR-09S	15.823
Vs0014		Bno homozygous cultivar with minor allele	-	-	-	-	-	-						C_unshiu_00375:mRNA_10.1	C_unshiu_00375	50515	51680	Metallothionein
Vs0013			-	-	-	-	-	-
Vs0012		Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Vs0011			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Vs0010			-	-	-	-	-	-		Ciclev10012145m	scaffold_6	21035910	21038368
Vs0009			-	-	-	-	-	-
Vs0008			-	-	-	-	-	-		Ciclev10032306m	scaffold_4	947943	949892
Vs0007			-	-	-	-	-	-		Ciclev10025931m	scaffold_7	1207141	1210820
Vs0006		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10025343m	scaffold_7	19024295	19026021	C_unshiu_00468:mRNA_22.1	C_unshiu_00468	132124	133922	Cytochrome P450 78A4	AGI-02	27.491			JtR-02	50.216	NAT-02S	3.328
Vs0005		OOthers	O	-	-	-	-	-	SI022,SI075	Ciclev10016009m	scaffold_2	33216839	33219042	C_unshiu_00002:mRNA_211.1	C_unshiu_00002	1511809	1513915	Epoxide hydrolase 2	AGI-06	31.521	KmG-02	59.329	JtR-06S	50.000	NAT-06S	50.000
Vs0004			-	-	-	-	-	-		Ciclev10021761m	scaffold_3	2078691	2083111	C_unshiu_00490:mRNA_23.1	C_unshiu_00490	182148	190847	Nucleosome assembly protein			KmG-06	51.244
Vs0003		AAvailable marker	-	-	-	-	O	O	SI077					C_unshiu_00009:mRNA_117.1	C_unshiu_00009	675718	677501	Cysteine proteinase RD19a	AGI-09	35.312	KmG-09	72.447			NAT-09	93.467
Vs0002		MDisagree by Marco analysis	-	-	-	-	-	-	SI103,SI115	Ciclev10000046m	scaffold_5	41184180	41190033	C_unshiu_00127:mRNA_46.1	C_unshiu_00127	341430	344325	Hypothetical protein	AGI-09	36.685	KmG-09	73.930	JtR-07	68.221
Vs0001			-	-	-	-	-	-
Tf0456			-	-	-	-	-	-		Ciclev10020156m	scaffold_3	44858333	44862278
Tf0455		OOthers	O	-	-	-	-	-		Ciclev10017004m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein	AGI-06	114.172
Tf0454		AAvailable marker	O	-	-	-	O	O		Ciclev10027306m	scaffold_7	16108723	16113463	C_unshiu_00371:mRNA_10.1	C_unshiu_00371	121418	127245	GATA transcription factor	AGI-02	21.099
Tf0452			-	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Tf0451			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Tf0450			-	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Tf0449		OOthers	O	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305	C_unshiu_01997:mRNA_4.1	C_unshiu_01997	32539	35330	Translation initiation factor IF-3	AGI-01	0.404
Tf0448			-	-	-	-	-	-		Ciclev10026715m	scaffold_7	252320	254049
Tf0447			-	-	-	-	-	-		Ciclev10021000m	scaffold_3	2002427	2008126
Tf0446			-	-	-	-	-	-		Ciclev10020000m	scaffold_3	42990251	42995979
Tf0445			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0444			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797
Tf0443			-	-	-	-	-	-		Ciclev10012193m	scaffold_6	5886744	5892919
Tf0442			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0441			-	-	-	-	-	-		Ciclev10000491m	scaffold_5	953167	960232
Tf0440			-	-	-	-	-	-		Ciclev10029354m	scaffold_8	18064761	18071003
Tf0439			-	-	-	-	-	-		Ciclev10020486m	scaffold_3	915818	919213
Tf0438			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Tf0437			-	-	-	-	-	-		Ciclev10004471m	scaffold_9	1148083	1152025
Tf0436			-	-	-	-	-	-		Ciclev10021374m	scaffold_3	5318874	5321054
Tf0434			-	-	-	-	-	-		Ciclev10026455m	scaffold_7	5173846	5179562
Tf0433			-	-	-	-	-	-		Ciclev10021699m	scaffold_3	43420187	43422432
Tf0432		AAvailable marker	O	-	-	-	O	O		Ciclev10016685m	scaffold_2	31420457	31425299	C_unshiu_00091:mRNA_39.1	C_unshiu_00091	370141	375026	Nuclear transcription factor Y subunit A-7	AGI-06	38.958
Tf0431		AAvailable marker	O	-	-	-	-	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A
Tf0429			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0427			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0426			-	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325
Tf0425			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Tf0424			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723	C_unshiu_00001:mRNA_134.1	C_unshiu_00001	904872	908655	Apyrase	AGI-07	77.041
Tf0423			-	-	-	-	-	-		Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	50.361
Tf0422			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Tf0421			-	-	-	-	-	-		Ciclev10020367m	scaffold_3	32895854	32900578
Tf0420		AAvailable marker	O	O	O	-	O	O		Ciclev10022018m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Tf0419		AAvailable marker	O	O	O	-	-	O		Ciclev10019228m	scaffold_3	47476188	47479361	C_unshiu_00023:mRNA_74.1	C_unshiu_00023	480170	486801	Protein LHY
Tf0416			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Tf0415			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0414			-	-	-	-	-	-		Ciclev10007297m	scaffold_1	12883722	12897805
Tf0412			-	-	-	-	-	-		Ciclev10028306m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0411		OOthers	O	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265	C_unshiu_00523:mRNA_15.1	C_unshiu_00523	100297	104594	Putative transcription factor PosF21	AGI-05	48.613
Tf0410		AAvailable marker	O	-	-	-	O	O		Ciclev10032838m	scaffold_4	213798	215848	C_unshiu_00168:mRNA_34.1	C_unshiu_00168	273522	275858	Pollen-specific protein SF3	AGI-07	6.146
Tf0409			-	-	-	-	-	-		Ciclev10016959m	scaffold_2	30886469	30892663
Tf0408			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0407			-	-	-	-	-	-		Ciclev10008836m	scaffold_1	526813	529150
Tf0406		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10008206m	scaffold_1	23463843	23470911	C_unshiu_00338:mRNA_22.1	C_unshiu_00338	163174	169978	NAD-dependent protein deacetylase SRT1	AGI-01	28.515
Tf0405			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497	C_unshiu_00220:mRNA_2.1	C_unshiu_00220	48148	53214	BEL1-like homeodomain protein 6	AGI-08	61.643
Tf0404			-	-	-	-	-	-		Ciclev10000454m	scaffold_5	29808453	29811460
Tf0403			-	-	-	-	-	-		Ciclev10031750m	scaffold_4	21666061	21671693
Tf0402			-	-	-	-	-	-		Ciclev10015893m	scaffold_2	36211961	36216858	C_unshiu_00077:mRNA_57.1	C_unshiu_00077	335424	340163	MYB-CC type transfactor	AGI-06	9.560
Tf0401			-	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808
Tf0400			-	-	-	-	-	-		Ciclev10007357m	scaffold_1	928640	936397
Tf0399			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0398			-	-	-	-	-	-		Ciclev10025996m	scaffold_7	490750	492882
Tf0397			-	-	-	-	-	-	SI008	Ciclev10013334m	scaffold_6	23657256	23657810	C_unshiu_00098:mRNA_65.1	C_unshiu_00098	441975	442704	Ocs element-binding factor 1	AGI-04	40.646
Tf0396		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI035	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60
Tf0395			-	-	-	-	-	-		Ciclev10014499m	scaffold_2	31489811	31497594
Tf0394			-	-	-	-	-	-		Ciclev10001508m	scaffold_5	34910794	34916593
Tf0393		AAvailable marker	O	-	-	-	-	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4									RP-09	29.347
Tf0392			-	-	-	-	-	-		Ciclev10001099m	scaffold_5	43036925	43044008
Tf0391			-	-	-	-	-	-		Ciclev10020053m	scaffold_3	50133837	50139049
Tf0390			-	-	-	-	-	-		Ciclev10030538m	scaffold_4	19816800	19825304
Tf0389			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Tf0388			O	-	-	-	-	-		Ciclev10004533m	scaffold_9	11993282	11999324
Tf0387			-	-	-	-	-	-		Ciclev10015591m	scaffold_2	35642412	35646764
Tf0386		AAvailable marker	O	O	O	-	O	O	SI044,SI095	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein	AGI-04	41.367
Tf0385			-	-	-	-	-	-		Ciclev10014026m	scaffold_2	9008920	9021876
Tf0384			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Tf0383			-	-	-	-	-	-		Ciclev10005062m	scaffold_9	16383851	16393557
Tf0381			-	-	-	-	-	-		Ciclev10014039m	scaffold_2	10459593	10472483
Tf0379			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0378			-	-	-	-	-	-		Ciclev10014909m	scaffold_2	19028389	19031661
Tf0377			-	-	-	-	-	-		Ciclev10000850m	scaffold_5	39495951	39498826
Tf0376		AAvailable marker	O	-	-	-	O	O	SI072	Ciclev10022680m	scaffold_3	8528292	8529236	C_unshiu_00154:mRNA_1.1	C_unshiu_00154	9832	10761	CRT binding factor 3	AGI-05	41.853
Tf0375			-	-	-	-	-	-		Ciclev10022365m	scaffold_3	13034654	13036082	C_unshiu_00020:mRNA_62.1	C_unshiu_00020	527751	528816	Homeobox leucine zipper protein	AGI-05	40.558
Tf0374			-	-	-	-	-	-		Ciclev10016964m	scaffold_2	30886469	30892663
Tf0373			-	-	-	-	-	-	SI088	Ciclev10011502m	scaffold_6	21229813	21233537	C_unshiu_00037:mRNA_60.1	C_unshiu_00037	387538	391239	Uridylate kinase, putative	AGI-04	61.716
Tf0372			-	-	-	-	-	-		Ciclev10020156m	scaffold_3	44858333	44862278
Tf0371			-	-	-	-	-	-		Ciclev10002081m	scaffold_5	20377552	20384333	C_unshiu_00913:mRNA_4.1	C_unshiu_00913	37450	43326	Hypothetical protein	AGI-09	102.280
Tf0370			-	-	-	-	-	-		Ciclev10019820m	scaffold_3	47121093	47124518	C_unshiu_00023:mRNA_20.1	C_unshiu_00023	123134	131389	Hypothetical protein	AGI-05	69.117
Tf0369			-	-	-	-	-	-		Ciclev10032644m	scaffold_4	12320439	12324228
Tf0368		AAvailable marker	O	-	-	-	O	O	SI102	Ciclev10020717m	scaffold_3	40963774	40965744	C_unshiu_00735:mRNA_9.1	C_unshiu_00735	76673	78652	NAC transcription factor 29	AGI-05	48.590
Tf0367			-	-	-	-	-	-		Ciclev10033497m	scaffold_4	13941880	13946022
Tf0366			-	-	-	-	-	-		Ciclev10015541m	scaffold_2	26890335	26894409
Tf0365			-	-	-	-	-	-		Ciclev10032012m	scaffold_4	16046322	16048971
Tf0364		AAvailable marker	O	-	-	-	O	O		Ciclev10011266m	scaffold_6	24606501	24612654	C_unshiu_00135:mRNA_49.1	C_unshiu_00135	338118	344273	FACT complex subunit SSRP1	AGI-04	37.102
Tf0363			-	-	-	-	-	-	SI002,SI096	Ciclev10019714m	scaffold_3	49318106	49324231	C_unshiu_00018:mRNA_126.1	C_unshiu_00018	839780	845037	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0362			-	-	-	-	-	-	SI062	Ciclev10026199m	scaffold_7	224443	227133	C_unshiu_02579:mRNA_3.1	C_unshiu_02579	13228	15002	WUSCHEL-related homeobox 13
Tf0361			-	-	-	-	-	-		Ciclev10005102m	scaffold_9	30778803	30783116
Tf0360			-	-	-	-	-	-	SI112	Ciclev10000627m	scaffold_5	38669123	38672110	C_unshiu_00430:mRNA_12.1	C_unshiu_00430	98615	101120	Trihelix transcription factor GT-2	AGI-09	43.140
Tf0359			-	-	-	-	-	-		Ciclev10008628m	scaffold_1	18298599	18300295
Tf0358			-	-	-	-	-	-	SI098	Ciclev10025169m	scaffold_7	2049068	2051708	No
Tf0357			-	-	-	-	-	-	SI018	Ciclev10025390m	scaffold_7	2246732	2249558	C_unshiu_01055:mRNA_7.1	C_unshiu_01055	60614	63050	Zinc finger protein JACKDAW	AGI-02	71.294
Tf0356			-	-	-	-	-	-	SI134,SI160	Ciclev10029063m	scaffold_8	998289	1001763	C_unshiu_00041:mRNA_95.3	C_unshiu_00041	588335	591780	Basic-leucine zipper (BZIP) transcription factor family	AGI-08	83.743
Tf0355			-	-	-	-	-	-		Ciclev10029260m	scaffold_8	6065092	6068908
Tf0354			-	-	-	-	-	-	SI070	Ciclev10021202m	scaffold_3	48704416	48708817	C_unshiu_00018:mRNA_33.1	C_unshiu_00018	219801	223933	Transcription factor ASG4
Tf0353		MDisagree by Marco analysis	O	-	-	-	-	-	SI087	Ciclev10018691m	scaffold_3	34696661	34702240	C_unshiu_00669:mRNA_17.2	C_unshiu_00669	126539	133312	Cell division cycle 5-like protein	AGI-08	53.069
Tf0352			-	-	-	-	-	-		Ciclev10022757m	scaffold_3	32904023	32906262
Tf0351			-	-	-	-	-	-	SI122	Ciclev10021622m	scaffold_3	43472094	43473220	C_unshiu_00411:mRNA_17.1	C_unshiu_00411	160316	161284	Ethylene-responsive transcription factor 1B	AGI-05	52.655
Tf0350		OOthers	O	-	-	-	-	-	SI132	Ciclev10019034m	scaffold_3	8914744	8921411	C_unshiu_00695:mRNA_7.1	C_unshiu_00695	71483	77987	Acetyl-coenzyme A synthetase	AGI-05	43.295
Tf0349			-	-	-	-	-	-		Ciclev10033770m	scaffold_4	20573683	20575539
Tf0348			-	-	-	-	-	-	SI118	Ciclev10012920m	scaffold_6	11611994	11614367	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8	AGI-08	96.565
Tf0347			-	-	-	-	-	-		Ciclev10020461m	scaffold_3	47429291	47431121
Tf0346			-	-	-	-	-	-		Ciclev10028485m	scaffold_8	24987539	24993295
Tf0345			-	-	-	-	-	-	SI011	Ciclev10027918m	scaffold_8	22248129	22254029	C_unshiu_00639:mRNA_3.1	C_unshiu_00639	31842	37665	Auxin response factor
Tf0344		AAvailable marker	O	-	-	-	O	O		Ciclev10016433m	scaffold_2	34624236	34631123	C_unshiu_00002:mRNA_17.1	C_unshiu_00002	124392	131264	Floral homeotic protein AGAMOUS	AGI-06	24.216
Tf0343		AtAvailable marker	O	-	-	-	O	O		Ciclev10016587m	scaffold_2	29204680	29206501	C_unshiu_00022:mRNA_67.1	C_unshiu_00022	489282	490950	High mobility group B protein 7	AGI-06	44.393
Tf0342			-	-	-	-	-	-	SI151	Ciclev10019088m	scaffold_3	1649410	1655963	C_unshiu_00343:mRNA_23.1	C_unshiu_00343	203038	209504	DNA repair helicase	AGI-05	5.510
Tf0341			-	-	-	-	-	-		Ciclev10009720m	scaffold_1	2025698	2028188
Tf0340			-	-	-	-	-	-		Ciclev10003996m	scaffold_5	27123826	27127430
Tf0339			-	-	-	-	-	-	SI019	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Tf0338			-	-	-	-	-	-		Ciclev10002202m	scaffold_5	41492325	41495372
Tf0337		AAvailable marker	O	-	-	-	O	O		Ciclev10031846m	scaffold_4	19635415	19637061	C_unshiu_00099:mRNA_23.1	C_unshiu_00099	186480	188051	Ap2 erf and b3 domain-containing transcription factor rav2	AGI-07	54.869
Tf0336			-	-	-	-	-	-		Ciclev10029022m	scaffold_8	10574673	10578797	C_unshiu_02599:mRNA_1.1	C_unshiu_02599	10362	14310	NAD(P)-linked oxidoreductase superfamily protein	AGI-08	54.304
Tf0335			-	-	-	-	-	-	SI014,SI168	Ciclev10033529m	scaffold_4	2457798	2458868	C_unshiu_00979:mRNA_19.1	C_unshiu_00979	85390	86600	C2 domain protein	AGI-07	13.855
Tf0334			-	-	-	-	-	-	SI034	Ciclev10007003m	scaffold_9	30983347	30984159	C_unshiu_00003:mRNA_76.2	C_unshiu_00003	557862	561962	Nuclear transcription factor Y subunit C-9
Tf0333			-	-	-	-	-	-		Ciclev10012193m	scaffold_6	5886744	5892919
Tf0332			-	-	-	-	-	-	SI081	Ciclev10001976m	scaffold_5	37586834	37589255	C_unshiu_00985:mRNA_11.1	C_unshiu_00985	97712	99966	NAC domain-containing protein 2	AGI-09	45.548
Tf0331			-	-	-	-	-	-		Ciclev10021868m	scaffold_3	4831751	4834270
Tf0330			-	-	-	-	-	-	SI064,SI139	Ciclev10014811m	scaffold_2	35970577	35973973	C_unshiu_00077:mRNA_15.2	C_unshiu_00077	102078	105358	Scarecrow-like transcription factor PAT1	AGI-06	13.470
Tf0328			-	-	-	-	-	-	SI039,SI180	Ciclev10021606m	scaffold_3	2530708	2533942	C_unshiu_00509:mRNA_27.1	C_unshiu_00509	178211	181426	Transcription factor bHLH79
Tf0327			-	-	-	-	-	-		Ciclev10009213m	scaffold_1	19056291	19058412
Tf0326		AAvailable marker	O	O	-	O	O	O	SI085	Ciclev10024695m	scaffold_7	2501520	2509737	C_unshiu_02417:mRNA_1.1	C_unshiu_02417	3692	11684	Histone-lysine N-methyltransferase SUVR5	AGI-02	69.928
Tf0325		OOthers	O	-	-	-	-	-		Ciclev10029355m	scaffold_8	6700441	6703748	C_unshiu_02974:mRNA_2.1	C_unshiu_02974	10142	13418	B-box type zinc finger family protein	AGI-08	57.386
Tf0324			-	-	-	-	-	-		Ciclev10002438m	scaffold_5	39986260	39987337
Tf0323			-	-	-	-	-	-	SI030	Ciclev10032304m	scaffold_4	24041593	24043549	C_unshiu_00001:mRNA_158.1	C_unshiu_00001	1037727	1039688	NAC transcription factor NAM-B1
Tf0322			-	-	-	-	-	-		Ciclev10002191m	scaffold_5	32699553	32702689
Tf0321			-	-	-	-	-	-	SI003	Ciclev10032283m	scaffold_4	24341642	24346244	C_unshiu_00001:mRNA_213.1	C_unshiu_00001	1358115	1363266	Putative WRKY transcription factor 57
Tf0320			-	-	-	-	-	-	SI203	Ciclev10033829m	scaffold_4	16223771	16226683	C_unshiu_00086:mRNA_13.2	C_unshiu_00086	99963	109609	AG MADS-box protein	AGI-07	45.716
Tf0319			-	-	-	-	-	-	SI152	Ciclev10026319m	scaffold_7	6872666	6877291	C_unshiu_00166:mRNA_10.1	C_unshiu_00166	78780	83374	Putative PHD finger protein ALFIN-LIKE 4-like	AGI-02	44.258
Tf0318		AAvailable marker	O	O	O	-	O	O		Ciclev10031873m	scaffold_4	13751433	13754767	C_unshiu_00240:mRNA_28.2	C_unshiu_00240	282002	285335	Transcription factor bHLH137	AGI-07	37.467
Tf0317			-	-	-	-	-	-	SI145	Ciclev10021941m	scaffold_3	2106810	2109266	C_unshiu_00490:mRNA_19.1	C_unshiu_00490	159122	161521	Transcription factor bHLH47
Tf0316			-	-	-	-	-	-		Ciclev10028732m	scaffold_8	3894266	3897671
Tf0315		AAvailable marker	O	-	-	-	O	O		Ciclev10012089m	scaffold_6	14087181	14090115	C_unshiu_00287:mRNA_20.1	C_unshiu_00287	221944	222997	Phantastica	AGI-08	93.657
Tf0314			-	-	-	-	-	-		Ciclev10012525m	scaffold_6	21263744	21265650
Tf0313			-	-	-	-	-	-		Ciclev10032572m	scaffold_4	20533474	20543182
Tf0312			-	-	-	-	-	-		Ciclev10029160m	scaffold_8	23158292	23161424
Tf0311		AAvailable marker	O	-	-	-	O	O		Ciclev10011596m	scaffold_6	15932016	15936176	C_unshiu_00779:mRNA_8.1	C_unshiu_00779	78105	81377	Auxin transporter-like protein 2	AGI-08	91.890
Tf0310			-	-	-	-	-	-		Ciclev10031598m	scaffold_4	19681884	19685929	C_unshiu_00099:mRNA_27.1	C_unshiu_00099	233334	237357	NAC domain-containing protein 8	AGI-07	54.869
Tf0309			-	-	-	-	-	-	SI190	Ciclev10020466m	scaffold_3	45314016	45316651	C_unshiu_00546:mRNA_23.1	C_unshiu_00546	158416	160829	TLP domain class transcription factor	AGI-05	57.948
Tf0308			-	-	-	-	-	-		Ciclev10028926m	scaffold_8	1993659	1996827
Tf0307		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10009286m	scaffold_1	25395688	25397278	C_unshiu_00442:mRNA_24.1	C_unshiu_00442	209015	209831	Myb domain protein 5	AGI-01	23.266
Tf0306			-	-	-	-	-	-		Ciclev10005750m	scaffold_9	26053930	26055086
Tf0305			-	-	-	-	-	-		Ciclev10008366m	scaffold_1	27554897	27556656
Tf0304			-	-	-	-	-	-		Ciclev10000491m	scaffold_5	953167	960232	C_unshiu_00033:mRNA_32.1	C_unshiu_00033	311804	317751	Auxin response factor	AGI-09	113.306
Tf0303			-	-	-	-	-	-	SI082	Ciclev10030491m	scaffold_4	6325180	6334300	C_unshiu_00210:mRNA_10.1	C_unshiu_00210	52148	60690	Putative lysine-specific demethylase ELF6
Tf0302			-	-	-	-	-	-	SI105	Ciclev10020754m	scaffold_3	41769833	41772129	No
Tf0301			-	-	-	-	-	-	SI182	Ciclev10021374m	scaffold_3	5318874	5321054	C_unshiu_00442:mRNA_14.1	C_unshiu_00442	123398	125451	Homeobox-leucine zipper protein HAT3
Tf0300		AAvailable marker	O	O	-	-	O	O		Ciclev10022370m	scaffold_3	43862440	43863744	C_unshiu_01051:mRNA_10.1	C_unshiu_01051	83417	84406	Auxin-induced protein IAA4	AGI-05	54.726
Tf0299			-	-	-	-	-	-		Ciclev10028534m	scaffold_8	1316879	1320611
Tf0297			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0296			-	-	-	-	-	-		Ciclev10005872m	scaffold_9	5305586	5310022
Tf0295			-	-	-	-	-	-		Ciclev10029316m	scaffold_8	2012329	2014782
Tf0294		AAvailable marker	O	-	-	-	O	O		Ciclev10021365m	scaffold_3	4794701	4799518	C_unshiu_00135:mRNA_58.2	C_unshiu_00135	398519	403121	Ureidoglycine aminohydrolase isoform 1	AGI-05	27.135
Tf0293		AAvailable marker	O	O	O	-	-	O		Ciclev10019219m	scaffold_3	49031441	49035202	C_unshiu_00018:mRNA_78.1	C_unshiu_00018	562898	566588	Putative anthocyanin regulator
Tf0292		OOthers	O	-	-	-	-	-		Ciclev10006112m	scaffold_9	31139789	31143240	C_unshiu_00003:mRNA_98.2	C_unshiu_00003	698480	711976	Protein strawberry notch	AGI-03	77.793
Tf0291			-	-	-	-	-	-		Ciclev10008882m	scaffold_1	28782169	28786731
Tf0290		AAvailable marker	O	-	-	-	O	O		Ciclev10029354m	scaffold_8	18064761	18071003	C_unshiu_00251:mRNA_10.1	C_unshiu_00251	118858	124101	Putative axial regulator YABBY 2	AGI-08	57.802
Tf0289			-	-	-	-	-	-	SI207	Ciclev10020486m	scaffold_3	915818	919213	C_unshiu_01070:mRNA_6.1	C_unshiu_01070	43545	46732	Putative E3 ubiquitin-protein ligase UBR7
Tf0287			-	-	-	-	-	-		Ciclev10001639m	scaffold_5	38186495	38189379
Tf0286		DDominant marker	O	-	-	-	-	-		Ciclev10011556m	scaffold_6	25001586	25004619	C_unshiu_01279:mRNA_6.1	C_unshiu_01279	43222	46082	Dof zinc finger protein DOF5.2	AGI-04	32.710
Tf0285			-	-	-	-	-	-		Ciclev10000654m	scaffold_5	12677414	12680761
Tf0284			-	-	-	-	-	-
Tf0282			-	-	-	-	-	-		Ciclev10021334m	scaffold_3	6654997	6660313
Tf0281			-	-	-	-	-	-		Ciclev10000850m	scaffold_5	39495951	39498826
Tf0280			-	-	-	-	-	-	SI158,SI200	Ciclev10025566m	scaffold_7	3429964	3433239	C_unshiu_00301:mRNA_24.3	C_unshiu_00301	159835	163045	Floral homeotic protein APETALA 2	AGI-05	54.268
Tf0279			-	-	-	-	-	-	SI073	Ciclev10019219m	scaffold_3	49031441	49035202	C_unshiu_00018:mRNA_78.1	C_unshiu_00018	562898	566588	Putative anthocyanin regulator	AGI-05	80.539
Tf0278			-	-	-	-	-	-		Ciclev10021157m	scaffold_3	10140904	10142752
Tf0277		OOthers	O	-	-	-	-	-		Ciclev10019282m	scaffold_3	181596	185335
Tf0276			-	-	-	-	-	-		Ciclev10004999m	scaffold_9	1169260	1172055
Tf0275		AAvailable marker	O	-	-	-	O	O		Ciclev10006256m	scaffold_9	955176	957425	C_unshiu_00249:mRNA_31.1	C_unshiu_00249	191274	194861	Transposon protein, putative, Mutator sub-class	AGI-03	11.501
Tf0274			-	-	-	-	-	-		Ciclev10008979m	scaffold_1	24354877	24358736
Tf0273			-	-	-	-	-	-		Ciclev10015710m	scaffold_2	33593642	33595988
Tf0271		Bno homozygous cultivar with minor allele	O	O	-	O	-	-		Ciclev10010976m	scaffold_6	11707953	11715646	C_unshiu_01619:mRNA_7.1	C_unshiu_01619	42347	50640	CCR4-NOT transcription complex subunit 4	AGI-08	95.613
Tf0270			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0269			-	-	-	-	-	-		Ciclev10025970m	scaffold_7	2274068	2279911
Tf0268		AAvailable marker	O	-	-	-	O	O		Ciclev10021157m	scaffold_3	10140904	10142752	C_unshiu_00149:mRNA_29.1	C_unshiu_00149	326478	328059	Transcription factor MYB21	AGI-05	43.800
Tf0267		AAvailable marker	O	-	-	-	O	O		Ciclev10031834m	scaffold_4	12571526	12575185	C_unshiu_00847:mRNA_8.1	C_unshiu_00847	48651	52296	Squamosa promoter-binding-like protein 13	AGI-07	37.800
Tf0266			-	-	-	-	-	-		Ciclev10030510m	scaffold_4	18456751	18473188
Tf0265			-	-	-	-	-	-	SI197	Ciclev10019232m	scaffold_3	49318106	49324231	C_unshiu_00018:mRNA_126.1	C_unshiu_00018	839780	845037	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Tf0264		AAvailable marker	O	-	-	-	O	O		Ciclev10015873m	scaffold_2	248256	250675	C_unshiu_00109:mRNA_29.1	C_unshiu_00109	175776	179005	GAN	AGI-06	103.728
Tf0263			-	-	-	-	-	-	SI013	Ciclev10008768m	scaffold_1	6358030	6359568	C_unshiu_00075:mRNA_22.1	C_unshiu_00075	227733	229211	Heat shock transcription factor A7a1
Tf0262			-	-	-	-	-	-		Ciclev10021374m	scaffold_3	5318874	5321054
Tf0261			-	-	-	-	-	-		Ciclev10012615m	scaffold_6	16418285	16421471
Tf0260			-	-	-	-	-	-		Ciclev10026457m	scaffold_7	5173846	5179864
Tf0259		AAvailable marker	O	-	-	-	O	O		Ciclev10026107m	scaffold_7	3674156	3676384	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-02	67.666
Tf0258			-	-	-	-	-	-	SI234	Ciclev10000508m	scaffold_5	41372513	41377106	C_unshiu_00127:mRNA_21.1	C_unshiu_00127	163658	166645	BEL1-like homeodomain protein 6
Tf0257			-	-	-	-	-	-	SI049	Ciclev10019816m	scaffold_3	43654587	43656842	C_unshiu_00805:mRNA_2.1	C_unshiu_00805	5667	6759	Transcription factor bHLH3
Tf0256		AtAvailable marker	O	-	-	-	O	O		Ciclev10021699m	scaffold_3	43420187	43422432	C_unshiu_00411:mRNA_13.1	C_unshiu_00411	116444	118424	Myb-related protein Myb4	AGI-05	52.314
Tf0255			-	-	-	-	-	-		Ciclev10009486m	scaffold_1	22111808	22116666
Tf0254		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10010885m	scaffold_6	23916876	23939827	C_unshiu_00253:mRNA_3.1	C_unshiu_00253	14647	20586	Hypothetical protein	AGI-04	38.226
Tf0253			-	-	-	-	-	-		Ciclev10016685m	scaffold_2	31420457	31425299
Tf0252			-	-	-	-	-	-		Ciclev10002005m	scaffold_5	43068093	43070554
Tf0251			-	-	-	-	-	-	SI005					C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative
Tf0250		AAvailable marker	O	-	-	-	O	O		Ciclev10028849m	scaffold_8	2697793	2701440	C_unshiu_00152:mRNA_36.1	C_unshiu_00152	252884	256413	DNA-directed RNA polymerase II subunit RPB3-A	AGI-08	73.105
Tf0249			-	-	-	-	-	-		Ciclev10023300m	scaffold_3	45793877	45798206
Tf0248			-	-	-	-	-	-		Ciclev10030929m	scaffold_4	15216527	15221460
Tf0247			-	-	-	-	-	-		Ciclev10009354m	scaffold_1	20550792	20553673
Tf0246			-	-	-	-	-	-		Ciclev10029834m	scaffold_8	5718913	5719431
Tf0245			-	-	-	-	-	-	SI021	Ciclev10008628m	scaffold_1	18298599	18300295	C_unshiu_00548:mRNA_21.1	C_unshiu_00548	168151	169460	Hypothetical protein
Tf0244			-	-	-	-	-	-		Ciclev10001847m	scaffold_5	35674416	35675935
Tf0243			-	-	-	-	-	-	SI231	Ciclev10032893m	scaffold_4	3636667	3641089	C_unshiu_00236:mRNA_46.1	C_unshiu_00236	271647	281392	Nuclear transcription factor Y subunit B-8
Tf0242			-	-	-	-	-	-		Ciclev10002528m	scaffold_5	33921984	33926087
Tf0241		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10027798m	scaffold_8	22106872	22114471	C_unshiu_00481:mRNA_18.1	C_unshiu_00481	121975	128680	Zinc finger CCCH domain-containing protein 24	AGI-08	27.618
Tf0240			-	-	-	-	-	-	SI184	Ciclev10018505m	scaffold_3	42718991	42733040	C_unshiu_00386:mRNA_19.1	C_unshiu_00386	164396	178993	Myosin 2
Tf0238			-	-	-	-	-	-	SI114	Ciclev10026387m	scaffold_7	551893	553909	C_unshiu_01559:mRNA_5.1	C_unshiu_01559	24035	34006	Receptor-like protein kinase THESEUS 1
Tf0237			-	-	-	-	-	-		Ciclev10004502m	scaffold_9	29392885	29395387
Tf0236			-	-	-	-	-	-		Ciclev10000034m	scaffold_5	38595158	38602400
Tf0235		MDisagree by Marco analysis	O	-	-	O	-	-		Ciclev10030472m	scaffold_4	17057658	17074755	C_unshiu_00225:mRNA_13.1	C_unshiu_00225	75706	96678	TATA-binding protein-associated factor 172	AGI-07	43.879
Tf0234			-	-	-	-	-	-		Ciclev10005012m	scaffold_9	23476661	23480861
Tf0233			-	-	-	-	-	-		Ciclev10008804m	scaffold_1	6772264	6775904
Tf0232			-	-	-	-	-	-	SI258,SI261	Ciclev10001105m	scaffold_5	37066208	37070717	C_unshiu_00773:mRNA_3.1	C_unshiu_00773	31351	35269	Histone-lysine N-methyltransferase ASHR1
Tf0231			-	-	-	-	-	-		Ciclev10026262m	scaffold_7	6760311	6763833
Tf0230			-	-	-	-	-	-	SI140	Ciclev10008206m	scaffold_1	23463843	23470911	C_unshiu_00338:mRNA_22.1	C_unshiu_00338	163174	169978	NAD-dependent protein deacetylase SRT1
Tf0229			-	-	-	-	-	-		Ciclev10028910m	scaffold_8	24248767	24251495
Tf0228			-	-	-	-	-	-		Ciclev10027952m	scaffold_8	6025802	6031497
Tf0227		AAvailable marker	O	-	-	-	O	O		Ciclev10031750m	scaffold_4	21666061	21671693	C_unshiu_00010:mRNA_30.1	C_unshiu_00010	183508	188843	Trihelix transcription factor GT-1	AGI-08	35.927
Tf0226		AAvailable marker	O	-	-	-	-	O		Ciclev10008836m	scaffold_1	526813	529150	C_unshiu_00129:mRNA_32.1	C_unshiu_00129	303106	311407	Exocyst subunit EXO70 family protein									RP-01	1.100
Tf0225			-	-	-	-	-	-		Ciclev10015893m	scaffold_2	36211961	36216858
Tf0224		OOthers	O	-	-	-	-	-		Ciclev10011741m	scaffold_6	7785328	7796808	C_unshiu_00104:mRNA_54.1	C_unshiu_00104	400959	412354	Zinc finger CCCH domain-containing protein 32	AGI-04	99.859
Tf0223			-	-	-	-	-	-		Ciclev10028561m	scaffold_8	23774309	23780334
Tf0222			-	-	-	-	-	-		Ciclev10008882m	scaffold_1	28782169	28786731
Tf0221			-	-	-	-	-	-	SI057,SI225	Ciclev10025996m	scaffold_7	490750	492882	C_unshiu_00488:mRNA_7.1	C_unshiu_00488	44813	48259	Ankyrin repeat domain-containing protein, chloroplastic	AGI-02	81.212
Tf0220			-	-	-	-	-	-		Ciclev10013334m	scaffold_6	23657256	23657810
Tf0219		Bno homozygous cultivar with minor allele	O	-	-	-	-	-	SI076,SI267	Ciclev10005087m	scaffold_9	25662049	25666791	C_unshiu_00115:mRNA_31.1	C_unshiu_00115	248109	252610	Transcription factor bHLH60	AGI-03	49.250
Tf0218			-	-	-	-	-	-		Ciclev10014499m	scaffold_2	31489811	31497594
Tf0217			-	-	-	-	-	-		Ciclev10001508m	scaffold_5	34910794	34916593
Tf0216			-	-	-	-	-	-		Ciclev10002569m	scaffold_5	29413143	29414562
Tf0215			-	-	-	-	-	-		Ciclev10001099m	scaffold_5	43036925	43044008
Tf0214			-	-	-	-	-	-	SI020	Ciclev10020053m	scaffold_3	50133837	50139049	C_unshiu_00014:mRNA_67.1	C_unshiu_00014	458017	462942	Transcription factor UNE10
Tf0213		OOthers	O	-	-	-	-	-		Ciclev10030571m	scaffold_4	18839546	18848948	C_unshiu_00039:mRNA_19.1	C_unshiu_00039	154778	176393	Enhancer OF AG-4-like protein, putative	AGI-07	48.581
Tf0212			-	-	-	-	-	-	SI196	Ciclev10030538m	scaffold_4	19816800	19825304	C_unshiu_00535:mRNA_20.1	C_unshiu_00535	166525	174142	Putative nuclear matrix constituent protein 1-like protein	AGI-07	56.586
Tf0211			-	-	-	-	-	-		Ciclev10008192m	scaffold_1	28607325	28610917
Tf0210			-	-	-	-	-	-	SI183	Ciclev10004533m	scaffold_9	11993282	11999324	C_unshiu_00926:mRNA_13.1	C_unshiu_00926	108384	111875	Zinc finger protein NUTCRACKER	AGI-08	56.724
Tf0209			-	-	-	-	-	-		Ciclev10015591m	scaffold_2	35642412	35646764
Tf0208			-	-	-	-	-	-	SI181	Ciclev10012022m	scaffold_6	23593516	23595492	C_unshiu_00098:mRNA_56.1	C_unshiu_00098	370300	372260	COL1 protein
Tf0207			-	-	-	-	-	-		Ciclev10014026m	scaffold_2	9008920	9021876
Tf0206			-	-	-	-	-	-		Ciclev10005479m	scaffold_9	23161294	23166939
Tf0205		OOthers	O	-	-	-	-	-	SI274	Ciclev10005062m	scaffold_9	16383851	16393557	C_unshiu_00094:mRNA_29.1	C_unshiu_00094	262934	272307	UBX domain-containing protein 1	AGI-03	46.274
Tf0204			-	-	-	-	-	-		Ciclev10027848m	scaffold_8	23589702	23593390
Tf0203			-	-	-	-	-	-	SI121	Ciclev10014039m	scaffold_2	10459593	10472483	C_unshiu_00403:mRNA_13.1	C_unshiu_00403	88988	102135	Homeodomain transcriptional regulator
Tf0202			-	-	-	-	-	-		Ciclev10032893m	scaffold_4	3636667	3641089
Tf0201			O	-	-	-	-	-	SI195	Ciclev10025985m	scaffold_7	15182950	15186486	C_unshiu_01526:mRNA_4.1	C_unshiu_01526	17982	21291	Ethylene-responsive transcription factor WRI1
Tf0200			O	-	-	-	-	-		Ciclev10030297m	scaffold_8	21095569	21102194
Tf0199			-	-	-	-	-	-	SI023,SI157	Ciclev10000697m	scaffold_5	30994812	30999834	C_unshiu_00422:mRNA_12.1	C_unshiu_00422	116754	121159	Serine/threonine-protein kinase isoform 2
Tf0198		AAvailable marker	O	-	-	-	-	O		Ciclev10032275m	scaffold_4	23695766	23697703	C_unshiu_00001:mRNA_105.2	C_unshiu_00001	685451	687250	Homeobox-leucine zipper protein HAT7
Tf0197			-	-	-	-	-	-		Ciclev10012447m	scaffold_6	14804828	14808139
Tf0196			-	-	-	-	-	-		Ciclev10025815m	scaffold_7	7796591	7799786	C_unshiu_01633:mRNA_1.1	C_unshiu_01633	9442	11959	Hypothetical protein	AGI-02	4.033
Tf0195		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10030351m	scaffold_8	67997	74191	C_unshiu_01137:mRNA_4.1	C_unshiu_01137	30837	36569	AT-rich interactive domain-containing protein 3	AGI-08	87.683
Tf0194			-	-	-	-	-	-		Ciclev10018639m	scaffold_3	42996886	43001548
Tf0193			-	-	-	-	-	-		Ciclev10007849m	scaffold_1	27167271	27171073
Tf0191			-	-	-	-	-	-		Ciclev10015847m	scaffold_2	5821401	5825173
Tf0189			-	-	-	-	-	-		Ciclev10001738m	scaffold_5	21379384	21385293
Tf0188			-	-	-	-	-	-		Ciclev10012285m	scaffold_6	15774976	15777653
Tf0187			-	-	-	-	-	-		Ciclev10013228m	scaffold_6	1950121	1950908
Tf0186			-	-	-	-	-	-		Ciclev10024602m	scaffold_3	5382490	5385009
Tf0185			O	-	-	-	-	-		Ciclev10014198m	scaffold_2	31740431	31747095
Tf0184		AAvailable marker	O	-	-	-	O	O		Ciclev10019968m	scaffold_3	45393857	45398298	C_unshiu_00546:mRNA_8.1	C_unshiu_00546	75023	78260	Zinc finger CCCH domain-containing protein 3	AGI-05	57.948
Tf0183			-	-	-	-	-	-		Ciclev10021488m	scaffold_3	30873886	30877367
Tf0181			-	-	-	-	-	-		Ciclev10011164m	scaffold_6	14694513	14700102
Tf0178			-	-	-	-	-	-		Ciclev10004481m	scaffold_9	7232959	7238380
Tf0177			-	-	-	-	-	-	SI133	Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein
Tf0176			-	-	-	-	-	-		Ciclev10008476m	scaffold_1	385469	388179	C_unshiu_00003:mRNA_163.1	C_unshiu_00003	1226924	1232429	Hypothetical protein									RP-01
Tf0175			-	-	-	-	-	-		Ciclev10010825m	scaffold_1	5054551	5056146
Tf0173			O	-	-	-	-	-		Ciclev10015413m	scaffold_2	26097343	26099320	C_unshiu_00259:mRNA_35.1	C_unshiu_00259	219790	227265	Hypothetical protein									RP-06.1	28.110
Tf0172			O	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176	C_unshiu_00496:mRNA_5.1	C_unshiu_00496	48069	50951	Auxin-induced protein IAA6	AGI-02	10.638
Tf0171			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0170			-	-	-	-	-	-		Ciclev10005681m	scaffold_9	31237089	31243866
Tf0169			-	-	-	-	-	-		Ciclev10004115m	scaffold_9	2284484	2302268
Tf0168		AAvailable marker	O	O	-	O	O	O	SI175	Ciclev10007563m	scaffold_1	24898769	24905716	C_unshiu_00341:mRNA_22.1	C_unshiu_00341	170777	178753	AT-rich interactive domain-containing protein 4	AGI-01	25.752
Tf0167			-	-	-	-	-	-	SI230,SI241,SI247	Ciclev10030998m	scaffold_4	17143350	17147918	C_unshiu_00478:mRNA_2.1	C_unshiu_00478	19232	27824	Sigma factor	AGI-07	46.244
Tf0166			-	-	-	-	-	-	SI156	Ciclev10000524m	scaffold_5	19682579	19686163	C_unshiu_00050:mRNA_13.1	C_unshiu_00050	140837	153470	Hypothetical protein	AGI-09	101.351
Tf0165		AAvailable marker	O	-	-	-	O	O		Ciclev10031793m	scaffold_4	19605473	19608059	C_unshiu_00099:mRNA_19.1	C_unshiu_00099	154500	156794	Two-component response regulator ARR18	AGI-07	55.503
Tf0163		AAvailable marker	O	-	-	-	O	O		Ciclev10010423m	scaffold_1	26740822	26744016	C_unshiu_00105:mRNA_35.1	C_unshiu_00105	316978	320206	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1	AGI-01	31.240
Tf0161			-	-	-	-	-	-		Ciclev10009165m	scaffold_1	28254307	28257305
Tf0160			-	-	-	-	-	-		Ciclev10026706m	scaffold_7	252320	254023
Tf0159			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0158			-	-	-	-	-	-		Ciclev10019607m	scaffold_3	4883124	4889593
Tf0156			-	-	-	-	-	-		Ciclev10031622m	scaffold_4	25027357	25030551
Tf0155			-	-	-	-	-	-		Ciclev10028860m	scaffold_8	6474195	6475882
Tf0154		AAvailable marker	O	-	-	-	-	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta
Tf0153		AAvailable marker	O	-	-	-	O	O		Ciclev10022594m	scaffold_3	16957427	16959735	C_unshiu_01562:mRNA_2.1	C_unshiu_01562	12059	15864	Nascent polypeptide-associated complex subunit beta	AGI-05	41.267
Tf0152		AAvailable marker	O	-	-	-	O	O		Ciclev10021000m	scaffold_3	2002427	2008126	C_unshiu_01105:mRNA_2.1	C_unshiu_01105	3681	8106	AT-hook motif nuclear localized protein 1	AGI-05	8.506
Tf0151		AAvailable marker	O	-	-	-	O	O	SI159,SI281	Ciclev10002917m	scaffold_5	35357333	35359897	No					AGI-09	60.528							RP-09	41.892
Tf0150		AAvailable marker	O	O	-	O	O	O	SI262	Ciclev10028292m	scaffold_8	22191056	22193554	C_unshiu_01354:mRNA_7.2	C_unshiu_01354	51348	53833	Zinc finger protein JACKDAW	AGI-08	25.220
Tf0149		HDisagree on Clementine haploid genotype	O	-	-	-	-	-	SI128,SI269	Ciclev10002290m	scaffold_5	29400846	29403554	C_unshiu_00110:mRNA_26.1	C_unshiu_00110	160409	163111	Auxin-responsive protein IAA16	AGI-09	85.976							RP-09	32.826
Tf0148		AAvailable marker	O	-	-	-	O	O	SI119	Ciclev10032816m	scaffold_4	20998708	21001535	C_unshiu_00010:mRNA_116.1	C_unshiu_00010	869802	872410	Putative WRKY transcription factor 75	AGI-07	64.812
Tf0147			-	-	-	-	-	-		Ciclev10001956m	scaffold_5	15764937	15766976	C_unshiu_00293:mRNA_8.1	C_unshiu_00293	104196	105925	NAC transcription factor	AGI-02	22.436
Tf0146		OOthers	-	-	-	-	-	-		Ciclev10020263m	scaffold_3	38111191	38116265
Tf0145			-	-	-	-	-	-	SI092	Ciclev10022479m	scaffold_3	8486491	8488997	C_unshiu_00154:mRNA_7.1	C_unshiu_00154	49131	60112	Floral homeotic protein APETALA 1
Tf0144			-	-	-	-	-	-	SI125,SI189,SI192	Ciclev10028782m	scaffold_8	8009000	8012045	C_unshiu_00682:mRNA_12.1	C_unshiu_00682	86334	89311	Transcription factor bHLH121	AGI-08	56.439
Tf0143			-	-	-	-	-	-	SI127	Ciclev10004758m	scaffold_9	30040457	30044615	C_unshiu_00134:mRNA_22.1	C_unshiu_00134	203848	206784	Sigma factor	AGI-03	68.846
Tf0142			-	-	-	-	-	-		Ciclev10012377m	scaffold_6	11826472	11830875
Tf0141			-	-	-	-	-	-		Ciclev10019130m	scaffold_3	1593979	1598159
Tf0140			-	-	-	-	-	-		Ciclev10004457m	scaffold_9	225971	232459	C_unshiu_00007:mRNA_144.1	C_unshiu_00007	929895	935477	Squamosa promoter-binding-like protein 1	AGI-03	9.830
Tf0139			-	-	-	-	-	-		Ciclev10026199m	scaffold_7	224443	227133
Tf0138			-	-	-	-	-	-		Ciclev10003996m	scaffold_5	27123826	27127430
Tf0137			-	-	-	-	-	-		Ciclev10018849m	scaffold_3	46482149	46489836
Tf0136			-	-	-	-	-	-		Ciclev10011338m	scaffold_6	21028837	21031557
Tf0135			-	-	-	-	-	-		Ciclev10019781m	scaffold_3	13977377	13980070
Tf0134			-	-	-	-	-	-		Ciclev10015364m	scaffold_2	24667102	24672331
Tf0133.2			-	-	-	-	-	-		Ciclev10018575m	scaffold_3	33349690	33357142
Tf0132			-	-	-	-	-	-		Ciclev10026056m	scaffold_7	3429964	3433239
Tf0131.2			-	-	-	-	-	-		Ciclev10000622m	scaffold_5	35548959	35554067
Tf0130			-	-	-	-	-	-		Ciclev10001027m	scaffold_5	19740133	19745806	C_unshiu_00050:mRNA_15.1	C_unshiu_00050	195528	200204	Transcription factor GAMYB	AGI-09	103.217
Tf0129			-	-	-	-	-	-		Ciclev10029032m	scaffold_8	19288177	19290093
Tf0128.2			-	-	-	-	-	-		Ciclev10023354m	scaffold_3	19936499	19941380
Tf0127			-	-	-	-	-	-		Ciclev10023918m	scaffold_3	1084467	1086978
Tf0126			-	-	-	-	-	-		Ciclev10025985m	scaffold_7	15182950	15186486
Tf0125			-	-	-	-	-	-		Ciclev10025501m	scaffold_7	16249523	16255343	C_unshiu_01042:mRNA_11.1	C_unshiu_01042	86577	91963	Ubiquitin-specific protease family C19 protein	AGI-02	21.337
Tf0124			-	-	-	-	-	-		Ciclev10007717m	scaffold_1	27457358	27462893	C_unshiu_00237:mRNA_37.1	C_unshiu_00237	259818	273281	Dethiobiotin synthase	AGI-01	34.062
Tf0123			-	-	-	-	-	-		Ciclev10001914m	scaffold_5	41555118	41556812
Tf0122			-	-	-	-	-	-		Ciclev10020009m	scaffold_3	24620623	24627357	C_unshiu_02869:mRNA_1.1	C_unshiu_02869	1885	10204	Hypothetical protein	AGI-05	41.306
Tf0121			-	-	-	-	-	-		Ciclev10005787m	scaffold_9	13223034	13225922
Tf0120			-	-	-	-	-	-		Ciclev10024826m	scaffold_7	3376826	3385936
Tf0119		AAvailable marker	-	-	-	-	O	O		Ciclev10014416m	scaffold_2	35564238	35570619	C_unshiu_01497:mRNA_5.1	C_unshiu_01497	20297	33375	Hypothetical protein	AGI-06	19.002
Tf0118			-	-	-	-	-	-		Ciclev10008617m	scaffold_1	4143948	4146608
Tf0117			-	-	-	-	-	-		Ciclev10005596m	scaffold_9	15107375	15113804	C_unshiu_00170:mRNA_11.1	C_unshiu_00170	91205	97326	Myb family transcription factor APL	AGI-03	46.274
Tf0116			-	-	-	-	-	-		Ciclev10025925m	scaffold_7	3541924	3543863
Tf0115			-	-	-	-	-	-		Ciclev10020967m	scaffold_3	7197712	7199779
Tf0114			-	-	-	-	-	-		Ciclev10015049m	scaffold_2	23826323	23829613
Tf0113			-	-	-	-	-	-		Ciclev10001251m	scaffold_5	38695747	38699629
Tf0112			O	-	-	-	-	-		Ciclev10031118m	scaffold_4	17014582	17026325	C_unshiu_00225:mRNA_9.1	C_unshiu_00225	37090	44898	Regulation of nuclear pre-mRNA domain-containing protein 1B	AGI-07	43.014
Tf0111			-	-	-	-	-	-		Ciclev10005142m	scaffold_9	2234066	2238313
Tf0110			-	-	-	-	-	-		Ciclev10019339m	scaffold_3	48063483	48066386
Tf0109.2			-	-	-	-	-	-		Ciclev10013781m	scaffold_6	25306829	25315243
Tf0108			-	-	-	-	-	-		Ciclev10021923m	scaffold_3	6828481	6829499
Tf0107			-	-	-	-	-	-		Ciclev10031190m	scaffold_4	23908189	23912723
Tf0106			-	-	-	-	-	-		Ciclev10006161m	scaffold_9	1128046	1129318	C_unshiu_00007:mRNA_6.1	C_unshiu_00007	49599	50702	GATA transcription factor 15	AGI-03	7.674
Tf0105			-	-	-	-	-	-		Ciclev10030696m	scaffold_4	13945795	13951313
Tf0104			-	-	-	-	-	-		Ciclev10011554m	scaffold_6	21450811	21454133
Tf0103			-	-	-	-	-	-		Ciclev10002094m	scaffold_5	354416	357301	C_unshiu_01920:mRNA_2.1	C_unshiu_01920	10140	12134	Putative NAC domain-containing protein 94	AGI-09	93.685
Tf0102			-	-	-	-	-	-		Ciclev10008813m	scaffold_1	734373	736031
Tf0101			-	-	-	-	-	-		Ciclev10015215m	scaffold_2	23163673	23168238
Tf0100			-	-	-	-	-	-		Ciclev10031899m	scaffold_4	22912615	22914628
Tf0099.2			-	-	-	-	-	-		Ciclev10019949m	scaffold_3	7286661	7290182
Tf0098.2			-	-	-	-	-	-		Ciclev10001945m	scaffold_5	36550507	36552800
Tf0097			-	-	-	-	-	-		Ciclev10005329m	scaffold_9	13039313	13041944
Tf0096			O	-	-	-	-	-		Ciclev10028804m	scaffold_8	21369373	21370728	C_unshiu_00784:mRNA_1.1	C_unshiu_00784	297	1652	Transcription factor RAX3	AGI-08	34.042
Tf0095			O	-	-	-	-	-		Ciclev10016229m	scaffold_2	34412152	34415059
Tf0094			-	-	-	-	-	-	SI006	Ciclev10031937m	scaffold_4	23957038	23959134	C_unshiu_00001:mRNA_145.1	C_unshiu_00001	950657	954895	Myb family transcription factor APL	AGI-07	77.141
Tf0093.2		AAvailable marker	O	-	-	-	O	O		Ciclev10002569m	scaffold_5	29413143	29414562	C_unshiu_00110:mRNA_25.1	C_unshiu_00110	149681	150624	Auxin-responsive protein IAA4	AGI-09	86.512
Tf0092			-	-	-	-	-	-	SI099	Ciclev10007435m	scaffold_1	3285601	3291534	C_unshiu_00006:mRNA_60.1	C_unshiu_00006	496127	502071	Class III HD-Zip family protein
Tf0091			-	-	-	-	-	-		Ciclev10019140m	scaffold_3	1301192	1305787
Tf0090		AAvailable marker	O	-	-	-	-	O		Ciclev10031135m	scaffold_4	16519046	16521918	C_unshiu_00086:mRNA_45.1	C_unshiu_00086	374812	377677	Transcription factor bHLH62
Tf0089			-	-	-	-	-	-		Ciclev10020367m	scaffold_3	32895854	32900578
Tf0088		MDisagree by Marco analysis	O	-	-	-	-	-	SI066	Ciclev10001291m	scaffold_5	41275201	41278829	C_unshiu_00127:mRNA_34.1	C_unshiu_00127	251592	254627	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1	AGI-09	35.763
Tf0087			-	-	-	-	-	-	SI166,SI271,SI287	Ciclev10031120m	scaffold_4	11412331	11417624	C_unshiu_00019:mRNA_18.1	C_unshiu_00019	190344	195992	Two-component response regulator-like APRR2	AGI-07	35.897
Tf0086			-	-	-	-	-	-		Ciclev10018915m	scaffold_3	62157	67039
Tf0085			-	-	-	-	-	-	SI094,SI211	Ciclev10012088m	scaffold_6	2067586	2073007	C_unshiu_00176:mRNA_13.1	C_unshiu_00176	89975	97731	Transcription factor-like protein DPB	AGI-08	96.807
Tf0084			-	-	-	-	-	-		Ciclev10000121m	scaffold_5	38288047	38296128	C_unshiu_00183:mRNA_40.1	C_unshiu_00183	305878	313881	Transcription elongation factor SPT5	AGI-09	44.096
Tf0083			-	-	-	-	-	-	SI129	Ciclev10021651m	scaffold_3	6602994	6605239	C_unshiu_00412:mRNA_10.1	C_unshiu_00412	80300	82171	Stay green protein	AGI-05	37.103
Tf0082.2			-	-	-	-	-	-		Ciclev10018963m	scaffold_3	47476188	47482822
Tf0081			-	-	-	-	-	-	SI038,SI324	Ciclev10021980m	scaffold_3	38214468	38216861	C_unshiu_00575:mRNA_8.1	C_unshiu_00575	47693	51431	Leucine-rich repeat disease resistance protein-like	AGI-05	48.590
Tf0080			-	-	-	-	-	-		Ciclev10011039m	scaffold_6	17611201	17617794
Tf0079		MDisagree by Marco analysis	O	-	-	O	-	-	SI270,SI294	Ciclev10021287m	scaffold_3	7047024	7049430	C_unshiu_00425:mRNA_7.1	C_unshiu_00425	35608	38027	Heat stress transcription factor B-4	AGI-05	45.092
Tf0078.2			-	-	-	-	-	-		Ciclev10020248m	scaffold_3	8647529	8652282
Tf0077			O	-	-	-	-	-	SI135	Ciclev10008135m	scaffold_1	28433972	28437921	C_unshiu_00590:mRNA_15.1	C_unshiu_00590	86430	90131	WRKY	AGI-01	34.814
Tf0076			-	-	-	-	-	-	SI266	Ciclev10031150m	scaffold_4	7200135	7204232	C_unshiu_00013:mRNA_63.3	C_unshiu_00013	459064	463137	NAC domain-containing protein 78	AGI-07	38.565
Tf0075			-	-	-	-	-	-	SI059,SI248	Ciclev10010972m	scaffold_6	19142307	19156510	C_unshiu_00089:mRNA_11.1	C_unshiu_00089	108874	122025	Homoserine kinase	AGI-04	66.455
Tf0074			O	-	-	-	-	-		Ciclev10005366m	scaffold_9	28444512	28446074	C_unshiu_00045:mRNA_7.1	C_unshiu_00045	62608	63842	TCP family transcription factor	AGI-03	37.816
Tf0073			-	-	-	-	-	-		Ciclev10011201m	scaffold_6	19840881	19844299
Tf0072			-	-	-	-	-	-		Ciclev10005403m	scaffold_9	28757274	28759075	C_unshiu_00045:mRNA_48.1	C_unshiu_00045	372168	373811	Heat stress transcription factor B-4	AGI-03	35.962
Tf0071			-	-	-	-	-	-	SI084,SI146	Ciclev10022102m	scaffold_3	26610747	26612959	C_unshiu_00167:mRNA_6.1	C_unshiu_00167	57300	62494	HAUS augmin-like complex subunit	AGI-03	46.274
Tf0070		OOthers	O	-	-	-	-	-	SI277	Ciclev10002250m	scaffold_5	39748754	39753073	C_unshiu_01089:mRNA_6.1	C_unshiu_01089	22643	26826	Basic helix-loop-helix family protein	AGI-09	45.029
Tf0069			-	-	-	-	-	-	SI199	Ciclev10001715m	scaffold_5	38566192	38571337	C_unshiu_00183:mRNA_2.1	C_unshiu_00183	20134	26910	Transcription factor RF2b	AGI-09	42.789							RP-09	77.126
Tf0068			-	-	-	-	-	-	SI106	Ciclev10020724m	scaffold_3	44141305	44144453	C_unshiu_00217:mRNA_25.1	C_unshiu_00217	201916	205032	Heat shock transcription factor A7a1	AGI-05	54.268
Tf0067		OOthers	O	-	-	-	-	-	SI033,SI187	Ciclev10025950m	scaffold_7	8438702	8442381	C_unshiu_00290:mRNA_9.1	C_unshiu_00290	74194	77624	Transcription factor	AGI-02	5.104
Tf0066			-	-	-	-	-	-	SI221	Ciclev10008812m	scaffold_1	18270818	18273015	C_unshiu_00187:mRNA_34.1	C_unshiu_00187	287391	289585	NAC domain-containing protein 72	AGI-01	58.420
Tf0065			-	-	-	-	-	-	SI142	Ciclev10030696m	scaffold_4	13945795	13951313	C_unshiu_00357:mRNA_3.1	C_unshiu_00357	35189	39739	Auxin response factor	AGI-07	41.876
Tf0064			-	-	-	-	-	-		Ciclev10005649m	scaffold_9	23409097	23411093
Tf0063			-	-	-	-	-	-		Ciclev10014617m	scaffold_2	8418789	8421898
Tf0062		Bno homozygous cultivar with minor allele	O	-	-	O	-	-	SI223	Ciclev10012377m	scaffold_6	11826472	11830875	C_unshiu_00207:mRNA_24.2	C_unshiu_00207	252955	255240	Transcription factor ASG4	AGI-08	93.624
Tf0061			-	-	-	-	-	-	SI150,SI186	Ciclev10001592m	scaffold_5	35159690	35164384	C_unshiu_00764:mRNA_4.1	C_unshiu_00764	30899	36628	Auxin-responsive protein IAA8	AGI-09	61.651
Tf0060			-	-	-	-	-	-		Ciclev10014642m	scaffold_2	35513796	35516719
Tf0059			-	-	-	-	-	-	SI101	Ciclev10007297m	scaffold_1	12883722	12897805	C_unshiu_00450:mRNA_3.1	C_unshiu_00450	36956	58462	AGC family Serine/Threonine kinase family protein	AGI-01	56.416
Tf0058			-	-	-	-	-	-	SI257	Ciclev10009065m	scaffold_1	20885102	20889283	C_unshiu_00395:mRNA_8.2	C_unshiu_00395	50978	54866	Fertilization-independent endosperm protein	AGI-01	46.623
Tf0057			-	-	-	-	-	-		Ciclev10000650m	scaffold_5	21243493	21247521
Tf0056		AAvailable marker	O	-	-	-	O	O	SI061,SI137	Ciclev10012265m	scaffold_6	22305922	22308021	C_unshiu_00252:mRNA_6.1	C_unshiu_00252	48632	49537	Myb domain protein 42	AGI-04	49.225
Tf0055.2			-	-	-	-	-	-		Ciclev10020053m	scaffold_3	50133837	50139049
Tf0054			O	-	-	-	-	-	SI238	Ciclev10000100m	scaffold_5	43108998	43114214	C_unshiu_01422:mRNA_2.1	C_unshiu_01422	15150	33598	Hypothetical protein	AGI-09	21.045
Tf0053			-	-	-	-	-	-	SI305	Ciclev10022321m	scaffold_3	29153425	29156189	C_unshiu_01169:mRNA_3.1	C_unshiu_01169	39141	41442	Peptide methionine sulfoxide reductase B5	AGI-05	42.265
Tf0052			-	-	-	-	-	-		Ciclev10015808m	scaffold_2	6901350	6905827
Tf0051			-	-	-	-	-	-	SI027,SI214	Ciclev10021952m	scaffold_3	3964036	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43	AGI-05	25.590
Tf0050			-	-	-	-	-	-	SI104,SI346	Ciclev10012152m	scaffold_6	24874840	24876388	C_unshiu_00135:mRNA_12.1	C_unshiu_00135	84260	85810	Myb-related protein 306	AGI-04	36.106
Tf0049			-	-	-	-	-	-	SI328	Ciclev10008919m	scaffold_1	24273993	24277800	C_unshiu_00047:mRNA_33.1	C_unshiu_00047	212549	221653	WD domain protein-like	AGI-01	26.841
Tf0048			-	-	-	-	-	-		Ciclev10020631m	scaffold_3	41955540	41957174
Tf0047			-	-	-	-	-	-		Ciclev10028908m	scaffold_8	1063711	1065289
Tf0046.2			-	-	-	-	-	-		Ciclev10026046m	scaffold_7	13308593	13311348
Tf0045			-	-	-	-	-	-	SI303,SI321	Ciclev10032837m	scaffold_4	23496020	23497466	C_unshiu_00001:mRNA_74.1	C_unshiu_00001	490607	491890	Homeobox transcription factor	AGI-07	74.573
Tf0044			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Tf0043			-	-	-	-	-	-		Ciclev10032519m	scaffold_4	24820269	24824732	C_unshiu_00001:mRNA_295.1	C_unshiu_00001	1871301	1874281	Agamous-like MADS-box protein AGL15	AGI-07	84.593
Tf0042.2		AAvailable marker	O	-	-	-	-	O		Ciclev10016820m	scaffold_2	9338651	9341271	C_unshiu_00067:mRNA_10.1	C_unshiu_00067	74696	88429	Hypothetical protein
Tf0041			-	-	-	-	-	-		Ciclev10009354m	scaffold_1	20550792	20553673
Tf0040.2			-	-	-	-	-	-		Ciclev10002260m	scaffold_5	406520	410924
Tf0039			-	-	-	-	-	-		Ciclev10020926m	scaffold_3	40240644	40244399
Tf0038.2			-	-	-	-	-	-		Ciclev10004955m	scaffold_9	25922689	25932568
Tf0037			-	-	-	-	-	-		Ciclev10005726m	scaffold_9	8466200	8470081
Tf0036		AAvailable marker	O	-	-	-	O	O		Ciclev10022032m	scaffold_3	43850269	43852816	C_unshiu_01051:mRNA_11.1	C_unshiu_01051	94369	96339	Auxin-responsive protein IAA14	AGI-05	53.260
Tf0035			-	-	-	-	-	-		Ciclev10016461m	scaffold_2	29047758	29049298
Tf0034			-	-	-	-	-	-		Ciclev10012593m	scaffold_6	23850970	23856058
Tf0033.2			-	-	-	-	-	-		Ciclev10008659m	scaffold_1	26872071	26875269
Tf0033			-	-	-	-	-	-		Ciclev10008659m	scaffold_1	26872071	26875269
Tf0032		AAvailable marker	O	-	-	-	O	O		Ciclev10026014m	scaffold_7	94155	97631	C_unshiu_00706:mRNA_8.1	C_unshiu_00706	51525	54837	AT-hook motif nuclear-localized protein 10	AGI-02	78.531
Tf0031.2			-	-	-	-	-	-		Ciclev10002789m	scaffold_5	42799538	42801821
Tf0030.2			-	-	-	-	-	-		Ciclev10027306m	scaffold_7	16108723	16113463
Tf0029			-	-	-	-	-	-		Ciclev10027901m	scaffold_8	21887372	21893128	C_unshiu_00500:mRNA_16.1	C_unshiu_00500	147319	151840	Auxin response factor	AGI-08	27.318
Tf0028			-	-	-	-	-	-	SI377	Ciclev10022572m	scaffold_3	19780711	19782241	C_unshiu_00443:mRNA_20.1	C_unshiu_00443	195567	202424	MADS-box transcription factor
Tf0027			-	-	-	-	-	-	SI046	Ciclev10026602m	scaffold_7	13911684	13912447	C_unshiu_00792:mRNA_11.1	C_unshiu_00792	92331	93069	Ethylene-responsive transcription factor ERF003	AGI-07	38.916
Tf0026			O	-	-	-	-	-	SI111,SI288	Ciclev10025369m	scaffold_7	285299	292550	C_unshiu_00312:mRNA_28.1	C_unshiu_00312	151229	158232	Ubiquilin	AGI-02	78.531
Tf0025.2			-	-	-	-	-	-		Ciclev10026197m	scaffold_7	4513037	4514995
Tf0024.2			-	-	-	-	-	-		Ciclev10026400m	scaffold_7	9976621	9980176
Tf0023.2			-	-	-	-	-	-		Ciclev10030688m	scaffold_4	25466629	25472365
Tf0022		MDisagree by Marco analysis	O	-	-	-	-	-	SI116	Ciclev10005681m	scaffold_9	31237089	31243866	C_unshiu_00003:mRNA_112.1	C_unshiu_00003	803488	808730	Zinc finger CCCH domain-containing protein 32	AGI-03	78.631
Tf0021		AAvailable marker	-	-	-	-	-	O		Ciclev10011169m	scaffold_6	21905557	21908832	C_unshiu_00079:mRNA_39.1	C_unshiu_00079	273228	275864	BZIP transcription factor family protein
Tf0020			-	-	-	-	-	-	SI154	Ciclev10026414m	scaffold_7	2289455	2291216	C_unshiu_00025:mRNA_31.1	C_unshiu_00025	258446	260200	Homeobox leucine zipper protein	AGI-02	71.294
Tf0019			-	-	-	-	-	-	SI056,SI347	Ciclev10001255m	scaffold_5	41881297	41883386	C_unshiu_00009:mRNA_161.1	C_unshiu_00009	1049324	1051358	C2H2-like zinc finger protein	AGI-09	34.799
Tf0018.2			-	-	-	-	-	-		Ciclev10015806m	scaffold_2	6900992	6905827
Tf0017			-	-	-	-	-	-	SI285	Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor	AGI-05	28.617
Tf0016			-	-	-	-	-	-	SI345	Ciclev10001979m	scaffold_5	39839984	39841860	C_unshiu_00169:mRNA_34.1	C_unshiu_00169	261779	263315	Transcription factor	AGI-09	42.158
Tf0015			-	-	-	-	-	-		Ciclev10021571m	scaffold_3	47956195	47957207
Tf0014.2			-	-	-	-	-	-		Ciclev10030185m	scaffold_8	24976315	24979483	C_unshiu_00271:mRNA_9.1	C_unshiu_00271	56325	61820	Transcription factor	AGI-08
Tf0013		OOthers	O	O	O	-	O	O	SI161,SI362	Ciclev10027769m	scaffold_8	13408610	13413938	C_unshiu_01226:mRNA_1.1	C_unshiu_01226	20559	25720	DNA replication licensing factor MCM2	AGI-08	56.123
Tf0012		AAvailable marker	-	-	-	-	O	O		Ciclev10018673m	scaffold_3	37601493	37607586	C_unshiu_00502:mRNA_21.1	C_unshiu_00502	155419	162660	Protein NLP8	AGI-05	47.173
Tf0011.2		OOthers	O	-	-	-	-	-		Ciclev10018614m	scaffold_3	11078798	11089090	C_unshiu_02207:mRNA_3.1	C_unshiu_02207	9802	19021	Hypothetical protein	AGI-05	42.191
Tf0010			-	-	-	-	-	-		Ciclev10021038m	scaffold_3	1054257	1056078	C_unshiu_00609:mRNA_18.1	C_unshiu_00609	77883	79313	Putative WRKY transcription factor 41	AGI-05
Tf0009.2			-	-	-	-	-	-		Ciclev10032838m	scaffold_4	213798	215848
Tf0008			-	-	-	-	-	-		Ciclev10006582m	scaffold_9	29169157	29173419
Tf0007			-	-	-	-	-	-		Ciclev10018564m	scaffold_3	22721217	22725936
Tf0006			-	-	-	-	-	-		Ciclev10011540m	scaffold_6	18299497	18301431
Tf0005.2		AAvailable marker	O	-	-	-	-	O		Ciclev10032578m	scaffold_4	21042049	21048279	C_unshiu_00010:mRNA_111.3	C_unshiu_00010	823068	829158	Agamous-like MADS-box protein AGL9 homolog
Tf0004			-	-	-	-	-	-	SI219,SI330	Ciclev10014045m	scaffold_2	33074821	33084014	C_unshiu_00153:mRNA_7.1	C_unshiu_00153	66406	75053	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2	AGI-06	32.312
Tf0003.2		OOthers	O	-	-	-	-	-		Ciclev10002471m	scaffold_5	37808878	37811097	C_unshiu_00238:mRNA_14.1	C_unshiu_00238	116142	129209	Hypothetical protein	AGI-09	44.054
Tf0002.2			-	-	-	-	-	-		Ciclev10026433m	scaffold_7	1507804	1510299
Tf0001.2		AAvailable marker	O	O	O	-	O	O		Ciclev10020248m	scaffold_3	8647529	8652282	C_unshiu_00580:mRNA_10.1	C_unshiu_00580	75118	81473	Transcription factor BIM1	AGI-05	41.893
Su0008			-	-	-	-	-	-		Ciclev10005600m	scaffold_9	729077	730936
Su0005			-	-	-	-	-	-
Su0004			-	-	-	-	-	-		Ciclev10022825m	scaffold_3	5829459	5830556
Su0003			-	-	-	-	-	-		Ciclev10016063m	scaffold_2	10456899	10459385
Su0002			-	-	-	-	-	-		Ciclev10007245m	scaffold_1	23236312	23242718
Su0001			-	-	-	-	-	-		Ciclev10012726m	scaffold_6	16312840	16314254
Sd0005			-	-	-	-	-	-		Ciclev10008384m	scaffold_1	2344790	2346942
Sd0004			-	-	-	-	-	-						C_unshiu_00810:mRNA_8.1	C_unshiu_00810	99220	102123	Myrcene synthase, chloroplastic	AGI-08	40.459
Sd0003			-	-	-	-	-	-		Ciclev10001661m	scaffold_5	7157125	7159270
Sd0002			-	-	-	-	-	-
Sd0001			-	-	-	-	-	-		Ciclev10013084m	scaffold_6	16344482	16346981
Ov0526		OOthers	-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218	C_unshiu_00201:mRNA_11.2	C_unshiu_00201	136005	138785	Aspartic proteinase nepenthesin-1			KmG-09		JtR-09S	0.758	NAT-09
Ov0525		ULess informative for main cultivars	O	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770	C_unshiu_01875:mRNA_4.1	C_unshiu_01875	35983	39196	ADP/ATP translocase 1	AGI-06	91.522							SA-06	27.092
Ov0524			-	-	-	-	-	-		Ciclev10027930m	scaffold_8	24613597	24623540
Ov0523			-	-	-	-	-	-		Ciclev10011639m	scaffold_6	17762614	17767198
Ov0522			-	-	-	-	-	-		Ciclev10026806m	scaffold_7	20056475	20058190
Ov0521			-	-	-	-	-	-		Ciclev10003767m	scaffold_5	15168047	15173092
Ov0520		OOthers	O	-	-	-	-	-		Ciclev10029053m	scaffold_8	4712393	4713689	C_unshiu_00438:mRNA_3.1	C_unshiu_00438	34343	35619	BURP domain-containing protein	AGI-08	33.144			JtR-08	26.748
Ov0519			-	-	-	-	-	-
Ov0518			-	-	-	-	-	-		Ciclev10009133m	scaffold_1	17185032	17187893
Ov0517			-	-	-	-	-	-
Ov0516			-	-	-	-	-	-		Ciclev10020524m	scaffold_3	35332191	35335063
Ov0515			-	-	-	-	-	-		Ciclev10020337m	scaffold_3	14878427	14882285	C_unshiu_01955:mRNA_4.1	C_unshiu_01955	21970	26584	DUF760 family protein			KmG-01	40.558
Ov0514			-	-	-	-	-	-		Ciclev10004975m	scaffold_9	7436355	7440439
Ov0513		OOthers	O	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949	C_unshiu_00009:mRNA_59.1	C_unshiu_00009	325807	333424	Hypothetical protein	AGI-04	38.903	KmG-04	5.110					RP-04	60.491
Ov0512		OOthers	O	-	-	-	-	-		Ciclev10006241m	scaffold_9	27198508	27199642	C_unshiu_00433:mRNA_19.1	C_unshiu_00433	116730	118286	Small heat shock protein	AGI-03	40.361	KmG-032	25.743	JtR-031		NAT-03
Ov0511			-	-	-	-	-	-		Ciclev10032764m	scaffold_4	6101482	6103243
Ov0510		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10011175m	scaffold_6	10016564	10019369	C_unshiu_00279:mRNA_11.1	C_unshiu_00279	116848	119657	Phenylalanine ammonia-lyase 1			KmG-04	62.284	JtR-04	3.789
Ov0509		ULess informative for main cultivars	O	-	-	-	-	-						No					AGI-09	102.280							RP-09	21.445
Ov0508	Ov0507.2		-	-	-	-	-	-	SI322	Ciclev10031860m	scaffold_4	642157	644823	C_unshiu_00202:mRNA_16.4	C_unshiu_00202	127322	129988	Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic	AGI-07	8.291			JtR-07	76.060
Ov0507		AAvailable marker	-	-	-	-	-	O		Ciclev10031860m	scaffold_4	642157	644823
Ov0506	Ov0505.2		-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0505		AAvailable marker	-	-	-	-	-	O		Ciclev10031252m	scaffold_4	16626338	16629094	C_unshiu_00250:mRNA_14.1	C_unshiu_00250	82573	84397	Tyrosine decarboxylase			KmG-07	53.887	JtR-07	48.672	NAT-07	3.814
Ov0504	Ov0503.2		-	-	-	-	-	-		Ciclev10020582m	scaffold_3	28382218	28386683
Ov0503		AtAvailable marker	O	-	-	-	-	O		Ciclev10020582m	scaffold_3	28382218	28386683	C_unshiu_00585:mRNA_5.1	C_unshiu_00585	31636	34824	60S ribosomal protein L5							NAT-05	19.042
Ov0502			-	-	-	-	-	-						C_unshiu_01254:mRNA_7.1	C_unshiu_01254	64349	65139	Hypothetical protein			KmG-04	62.093	JtR-04	3.789			RP-09
Ov0501			-	-	-	-	-	-		Ciclev10019938m	scaffold_3	48089473	48091232	C_unshiu_00026:mRNA_86.1	C_unshiu_00026	712172	713868	Nepenthesin II									RP-05	61.026
Ov0429	Ov0429.k		-	-	-	-	-	-		Ciclev10015338m	scaffold_2	290799	294122
Ov0428	Ov0427.2		-	-	-	-	-	-		Ciclev10009427m	scaffold_1	2156679	2158871
Ov0427			-	-	-	-	-	-		Ciclev10009427m	scaffold_1	2156679	2158871	C_unshiu_00553:mRNA_14.1	C_unshiu_00553	110847	134434	Hypothetical protein			KmG-05S	36.268
Ov0426	Ov0425.2		-	-	-	-	-	-		Ciclev10015385m	scaffold_2	4021167	4024377
Ov0425		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI051,SI291,SI351,SI371	Ciclev10015385m	scaffold_2	4021167	4024377	C_unshiu_00992:mRNA_13.1	C_unshiu_00992	79008	82132	DnaJ	AGI-07	41.317							RP-07	25.534
Ov0424			-	-	-	-	-	-		Ciclev10029115m	scaffold_8	23480483	23484398
Ov0423		T3 or more alleleic model	O	-	-	-	-	-		Ciclev10023016m	scaffold_3	42954362	42955051	C_unshiu_00152:mRNA_28.1	C_unshiu_00152	189707	190632	Hypothetical protein	AGI-05	55.522
Ov0422		AAvailable marker	-	-	-	-	-	O		Ciclev10016314m	scaffold_2	11071587	11074479	C_unshiu_00184:mRNA_33.1	C_unshiu_00184	295953	298736	14-3-3-like protein GF14 mu									RP-06.1	28.576
Ov0421	Ov0420.2		-	-	-	-	-	-		Ciclev10019489m	scaffold_3	24840386	24845254
Ov0420		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10019489m	scaffold_3	24840386	24845254	C_unshiu_00286:mRNA_25.1	C_unshiu_00286	176709	181573	Methylenetetrahydrofolate reductase (NAD(P)H)	AGI-05	41.306			JtR-05	41.208
Ov0419		AAvailable marker	-	-	-	-	-	O		Ciclev10011593m	scaffold_6	16709179	16712039	C_unshiu_00008:mRNA_31.2	C_unshiu_00008	178086	180944	Pyruvate decarboxylase									RP-04	11.143
Ov0418			-	-	-	-	-	-		Ciclev10015900m	scaffold_2	11863906	11865549
Ov0417			-	-	-	-	-	-		Ciclev10007609m	scaffold_1	851900	857695
Ov0416			-	-	-	-	-	-		Ciclev10004279m	scaffold_9	24807948	24823388
Ov0415			-	-	-	-	-	-		Ciclev10007121m	scaffold_9	2339077	2341173
Ov0414	Ov0413.2		-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065
Ov0413			-	-	-	-	-	-		Ciclev10028322m	scaffold_8	17809428	17813065	C_unshiu_00225:mRNA_26.1	C_unshiu_00225	238952	242235	Cellular nucleic acid-binding protein like			KmG-07	34.263
Ov0412		OOthers	-	-	-	-	O	O	SI050,SI222	Ciclev10015053m	scaffold_2	31036088	31038222	C_unshiu_00143:mRNA_11.1	C_unshiu_00143	67475	69537	SEC14 cytosolic factor family protein	AGI-06	42.110	KmG-06	39.373	JtR-06S	15.372
Ov0411			-	-	-	-	-	-		Ciclev10011259m	scaffold_6	23410636	23414246
Ov0410			-	-	-	-	-	-		Ciclev10001911m	scaffold_5	41005054	41009065
Ov0409			-	-	-	-	-	-		Ciclev10022219m	scaffold_3	4736047	4740432
Ov0408		AAvailable marker	-	-	-	-	-	O		Ciclev10011522m	scaffold_6	18491789	18493623	C_unshiu_00248:mRNA_30.1	C_unshiu_00248	247183	248778	UDP-glycosyltransferase 71C4			KmG-04	50.902					RP-04	23.745
Ov0407		AAvailable marker	-	-	-	-	O	O		Ciclev10000563m	scaffold_5	37043417	37051080	C_unshiu_00773:mRNA_1.1	C_unshiu_00773	7888	15416	OSBP(Oxysterol binding protein)-related protein 1C isoform 3	AGI-09	46.097	KmG-09	48.606	JtR-09S	66.176			RP-09	76.027
Ov0406			-	-	-	-	-	-		Ciclev10025329m	scaffold_7	5159995	5165972
Ov0405			-	-	-	-	-	-		Ciclev10011509m	scaffold_6	18406856	18412391
Ov0404		AAvailable marker	-	-	-	-	-	O		Ciclev10002415m	scaffold_5	29768091	29769281	C_unshiu_00731:mRNA_6.3	C_unshiu_00731	26598	28767	Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase			KmG-09	29.016	JtR-09S	31.495			RP-09	29.347
Ov0403		AAvailable marker	O	-	-	-	O	O	SI136,SI298,SI325	Ciclev10016280m	scaffold_2	23891814	23893095	C_unshiu_00081:mRNA_50.1	C_unshiu_00081	296655	297936	Chlorophyll a/b binding protein	AGI-06	61.779	KmG-06	12.610	JtR-06S
Ov0402			-	-	-	-	-	-		Ciclev10011849m	scaffold_6	9847502	9854667
Ov0401		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10004762m	scaffold_9	28736008	28740315	No							KmG-08	58.635					SA-06
Ov0326			-	-	-	-	-	-		Ciclev10001212m	scaffold_5	21522433	21525218
Ov0325			-	-	-	-	-	-		Ciclev10016692m	scaffold_2	35180594	35182774	C_unshiu_00048:mRNA_54.1	C_unshiu_00048	359734	361893	SGS domain-containing protein							NAT-082	48.374
Ov0324		AAvailable marker	-	-	-	-	-	O		Ciclev10030198m	scaffold_8	22575845	22578398	C_unshiu_01619:mRNA_6.1	C_unshiu_01619	15139	24519	Hypothetical protein			KmG-08	23.615
Ov0323			-	-	-	-	-	-		Ciclev10005490m	scaffold_9	5549195	5553148
Ov0322		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10003485m	scaffold_5	36398988	36399239	C_unshiu_00241:mRNA_9.1	C_unshiu_00241	39546	40639	Microsomal signal peptidase 12 kDa protein	AGI-09	50.810	KmG-09	42.179	JtR-09S	62.873			RP-09	70.369
Ov0321			-	-	-	-	-	-		Ciclev10018918m	scaffold_3	42776479	42784038
Ov0320			-	-	-	-	-	-		Ciclev10005968m	scaffold_9	27640074	27641178	C_unshiu_00252:mRNA_13.1	C_unshiu_00252	89281	90198	21 kDa protein									RP-03	56.919
Ov0319			-	-	-	-	-	-		Ciclev10009395m	scaffold_1	25761570	25764926	C_unshiu_00066:mRNA_53.1	C_unshiu_00066	333477	336681	Ubiquitin system component Cue protein			KmG-032	19.158
Ov0318		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10012779m	scaffold_6	19405285	19407278	C_unshiu_00273:mRNA_20.1	C_unshiu_00273	103250	105183	40S ribosomal protein S5
Ov0317	Ov0316.2		-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516
Ov0316			-	-	-	-	-	-		Ciclev10020995m	scaffold_3	3963024	3966516	C_unshiu_00318:mRNA_19.1	C_unshiu_00318	155111	158235	Zinc finger CCCH domain-containing protein 43					JtR-05	31.749
Ov0315		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10013467m	scaffold_6	23430375	23436161	C_unshiu_00098:mRNA_32.2	C_unshiu_00098	207615	213748	Putative nuclear matrix constituent protein 1-like protein			KmG-04	7.092
Ov0314		AAvailable marker	O	-	-	-	O	O	SI107	Ciclev10029386m	scaffold_8	8176371	8177435	C_unshiu_00728:mRNA_1.1	C_unshiu_00728	4070	4922	Mannan polymerase complex subunit mnn9	AGI-08	56.724	KmG-08	58.356	JtR-08	21.829			RP-08	41.217
Ov0313		OOthers	-	-	-	-	-	-		Ciclev10002372m	scaffold_5	41844984	41847835	C_unshiu_00009:mRNA_157.1	C_unshiu_00009	1013478	1016014	Diphthine synthase			KmG-09	79.072
Ov0312			-	-	-	-	-	-		Ciclev10018858m	scaffold_3	1344192	1349935	C_unshiu_00541:mRNA_19.1	C_unshiu_00541	170170	175878	Spastin									SA-09	8.022
Ov0311			-	-	-	-	-	-		Ciclev10022001m	scaffold_3	18341166	18342395	C_unshiu_00417:mRNA_9.1	C_unshiu_00417	93426	94543	Kunitz trypsin inhibitor			KmG-04	10.598			NAT-09	82.730
Ov0310			-	-	-	-	-	-		Ciclev10023404m	scaffold_3	48463395	48465325	C_unshiu_00026:mRNA_46.1	C_unshiu_00026	334715	336716	Lanatoside 15-O-acetylesterase			KmG-01	21.291	JtR-01S	61.287
Ov0309			-	-	-	-	-	-		Ciclev10022230m	scaffold_3	8078609	8083078
Ov0308			-	-	-	-	-	-		Ciclev10032476m	scaffold_4	16730150	16735004
Ov0307		OOthers	-	-	-	-	-	-		Ciclev10015790m	scaffold_2	4937047	4940138
Ov0306		OOthers	-	-	-	-	-	-	SI382	Ciclev10026199m	scaffold_7	224443	227133	No					AGI-02	79.663	KmG-02	72.516	JtR-02	8.671	NAT-02S	60.000
Ov0305		MDisagree by Marco analysis	O	-	-	-	-	-	SI028,SI292	Ciclev10012499m	scaffold_6	16909492	16912088	C_unshiu_00008:mRNA_65.1	C_unshiu_00008	366943	369504	40S ribosomal protein S4	AGI-08	88.433	KmG-04	45.755					RP-04	15.410
Ov0304			-	-	-	-	-	-		Ciclev10000702m	scaffold_5	6482366	6484923
Ov0303			-	-	-	-	-	-		Ciclev10011600m	scaffold_6	25160851	25164999
Ov0302	Ov0301.2		-	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor
Ov0301		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI078	Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	23.526	JtR-05	19.932			RP-05	21.590
Ov0129	Ov0129.k		-	-	-	-	-	-		Ciclev10030928m	scaffold_4	2717014	2719856
Ov0128		OOthers	-	-	-	-	-	-		Ciclev10015870m	scaffold_2	35334245	35336841
Ov0127	Ov0126.2		-	-	-	-	-	-	SI124,SI284	Ciclev10022482m	scaffold_3	46814909	46817474	C_unshiu_00053:mRNA_57.3	C_unshiu_00053	477728	479995	ADP-ribosylation factor A1F	AGI-05	65.510	KmG-05S	81.631	JtR-05	45.715			RP-05	64.195
Ov0126		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10022482m	scaffold_3	46814909	46817474
Ov0125		AAvailable marker	-	-	-	-	O	O		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase	AGI-08	41.398
Ov0124			-	-	-	-	-	-		Ciclev10002135m	scaffold_5	29706688	29710388
Ov0123	Ov0122.2		-	-	-	-	-	-		Ciclev10019557m	scaffold_3	41636616	41641083
Ov0122		OOthers	-	-	-	-	-	-		Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_01535:mRNA_2.2	C_unshiu_01535	14018	19080	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase			KmG-05S	65.738	JtR-05	41.268
Ov0121		HDisagree on Clementine haploid genotype	-	-	-	-	-	-		Ciclev10028359m	scaffold_8	20352232	20354410	C_unshiu_00320:mRNA_8.1	C_unshiu_00320	86929	88531	Arogenate dehydratase							NAT-081
Ov0120			-	-	-	-	-	-		Ciclev10014574m	scaffold_2	5533591	5538729
Ov0119			-	-	-	-	-	-		Ciclev10016788m	scaffold_2	29172772	29175757
Ov0118		AAvailable marker	O	-	-	-	O	O	SI357	Ciclev10001621m	scaffold_5	34294853	34297359	C_unshiu_03047:mRNA_1.1	C_unshiu_03047	1418	3450	Dihydrodipicolinate synthase	AGI-04	34.838	KmG-09	36.138	JtR-09S	72.673	NAT-09	55.867
Ov0117		AAvailable marker	O	-	-	-	O	O	SI040	Ciclev10010926m	scaffold_6	19105139	19113780	C_unshiu_00089:mRNA_17.1	C_unshiu_00089	153791	161685	Hypothetical protein	AGI-04	66.455							RP-04	28.160
Ov0116			-	-	-	-	-	-		Ciclev10032931m	scaffold_4	3193875	3196468	C_unshiu_00342:mRNA_22.1	C_unshiu_00342	154980	164222	Hypothetical protein			KmG-02	53.208	JtR-02	27.051			RP-02.2	5.192
Ov0115			-	-	-	-	-	-		Ciclev10008504m	scaffold_1	13063201	13068419
Ov0114			-	-	-	-	-	-						C_unshiu_00206:mRNA_12.3	C_unshiu_00206	75980	77488	Nucleoside diphosphate kinase			KmG-032	18.485	JtR-031	11.761
Ov0113	Ov0112.2		-	-	-	-	-	-		Ciclev10021050m	scaffold_3	33252463	33253730
Ov0112		OOthers	-	-	-	-	-	-		Ciclev10021050m	scaffold_3	33252463	33253730	C_unshiu_01571:mRNA_4.1	C_unshiu_01571	43836	45084	Sulfotransferase			KmG-05S	42.335					RP-05	53.076
Ov0111		AAvailable marker	-	-	-	-	O	O		Ciclev10000069m	scaffold_5	8532280	8539677	C_unshiu_00033:mRNA_6.1	C_unshiu_00033	57678	65071	TSA: Wollemia nobilis transcribed RNA sequence	AGI-09	85.810	KmG-09	11.923	JtR-09S	6.157			RP-09	20.238
Ov0110			-	-	-	-	-	-		Ciclev10009770m	scaffold_1	22118203	22120791
Ov0109		MDisagree by Marco analysis	O	-	-	-	-	-	SI172,SI202	Ciclev10004309m	scaffold_9	30513333	30517676	C_unshiu_00003:mRNA_13.1	C_unshiu_00003	122283	126575	Elongation factor 2	AGI-03	71.060			JtR-032	13.729			RP-03	71.532
Ov0108			-	-	-	-	-	-		Ciclev10028959m	scaffold_8	445469	446936
Ov0107			-	-	-	-	-	-		Ciclev10011477m	scaffold_6	18855028	18858879
Ov0105.2	Ov0106.2		-	-	-	-	-	-		Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant	AGI-07	74.064	KmG-07	15.390	JtR-07	5.947
Ov0105		MDisagree by Marco analysis	O	-	-	-	-	-	SI126,SI278	Ciclev10031362m	scaffold_4	23552856	23556415	C_unshiu_00001:mRNA_81.1	C_unshiu_00001	545345	548897	Receptor-like kinase plant							NAT-07	36.023	RP-07
Ov0104		AAvailable marker	O	-	-	-	O	O	SI216	Ciclev10004850m	scaffold_9	13440332	13442904	C_unshiu_02379:mRNA_2.1	C_unshiu_02379	22906	25482	Obtusifoliol 14-alpha demethylase	AGI-08	56.724			JtR-08	28.207
Ov0103			-	-	-	-	-	-		Ciclev10019410m	scaffold_3	5991281	5995312
Ov0102			-	-	-	-	-	-		Ciclev10019301m	scaffold_3	972289	976751
Ov0101			-	-	-	-	-	-		Ciclev10001010m	scaffold_5	40691801	40694522
Ov0027	Ov0027.em		-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377	C_unshiu_00584:mRNA_9.1	C_unshiu_00584	74089	76266	60S ribosomal protein L28	AGI-03	51.749
Ov0026	Ov0026.k		-	-	-	-	-	-		Ciclev10009797m	scaffold_1	8417158	8419377
Ov0025			-	-	-	-	-	-		Ciclev10028313m	scaffold_8	861284	864282
Ov0024			-	-	-	-	-	-		Ciclev10020504m	scaffold_3	46981628	46984276
Ov0023			-	-	-	-	-	-		Ciclev10018991m	scaffold_3	49827655	49832343
Ov0022			-	-	-	-	-	-		Ciclev10011738m	scaffold_6	20161613	20163972
Ov0021			-	-	-	-	-	-		Ciclev10015535m	scaffold_2	11863906	11865549
Ov0020		AAvailable marker	O	-	-	-	O	O	SI055,SI143,SI213	Ciclev10011842m	scaffold_6	21598429	21600967	C_unshiu_00037:mRNA_7.2	C_unshiu_00037	37719	40241	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase	AGI-04	55.145	KmG-04	22.465			NAT-04	3.806	RP-04	40.905
Ov0019			-	-	-	-	-	-		Ciclev10019002m	scaffold_3	16357227	16363309
Ov0018		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10028443m	scaffold_8	22316999	22319482	C_unshiu_00082:mRNA_34.1	C_unshiu_00082	267163	269630	Elongation factor 1-alpha
Ov0017			-	-	-	-	-	-		Ciclev10011979m	scaffold_6	18167218	18172180
Ov0016			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0015		OOthers	O	-	-	-	-	-	SI304	Ciclev10026223m	scaffold_7	8255046	8256442	C_unshiu_02827:mRNA_2.1	C_unshiu_02827	15986	17224	Stem 28 kDa glycoprotein	AGI-02	34.494	KmG-02	35.126	JtR-02	19.319
Ov0014			-	-	-	-	-	-		Ciclev10000825m	scaffold_5	40617691	40619818
Ov0013		OOthers	-	-	-	-	-	-		Ciclev10005251m	scaffold_9	18058387	18060752	C_unshiu_00556:mRNA_14.1	C_unshiu_00556	103101	105466	Caffeic acid 3-O-methyltransferase	AGI-03	50.691	KmG-032	18.852	JtR-031	11.918			RP-03	38.986
Ov0012			-	-	-	-	-	-		Ciclev10019638m	scaffold_3	2933121	2937460	C_unshiu_00092:mRNA_50.1	C_unshiu_00092	356984	361021	Aldehyde dehydrogenase			KmG-05S	100.000
Ov0011			-	-	-	-	-	-		Ciclev10002024m	scaffold_5	34558362	34564638
Ov0010			-	-	-	-	-	-		Ciclev10031252m	scaffold_4	16626338	16629094
Ov0009			-	-	-	-	-	-		Ciclev10023099m	scaffold_3	47257565	47258746
Ov0008			-	-	-	-	-	-		Ciclev10028019m	scaffold_8	17659925	17664551
Ov0007.2			-	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918
Ov0006		Bno homozygous cultivar with minor allele	O	-	-	-	-	-		Ciclev10021068m	scaffold_3	5360113	5362918	C_unshiu_00442:mRNA_18.1	C_unshiu_00442	163615	166153	Transcription factor			KmG-05S	25.587	JtR-08	27.669
Ov0005		AAvailable marker	-	-	-	-	O	O	SI243,SI331	Ciclev10019557m	scaffold_3	41636616	41641083	C_unshiu_02126:mRNA_2.1	C_unshiu_02126	9391	13319	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	AGI-05	47.986
Ov0004			-	-	-	-	-	-		Ciclev10025545m	scaffold_7	20360086	20363290	C_unshiu_00650:mRNA_9.1	C_unshiu_00650	86670	89289	Myo-inositol-1 phosphate synthase			KmG-02	17.680			NAT-02S
Ov0003			-	-	-	-	-	-		Ciclev10015260m	scaffold_2	15833142	15836770
Ov0002		AAvailable marker	O	-	-	-	O	O	SI110,SI179	Ciclev10032770m	scaffold_4	2422861	2424838	C_unshiu_00979:mRNA_13.2	C_unshiu_00979	50508	52478	60S ribosomal protein L10	AGI-07	13.657			JtR-07	68.221			RP-07	82.035
Ov0001			-	-	-	-	-	-		Ciclev10005408m	scaffold_9	9805899	9809222
Mf0102			-	-	-	-	-	-
Mf0101		OOthers	-	-	-	-	-	-		Ciclev10004309m	scaffold_9	30513333	30517676
Mf0100			O	-	-	-	-	-		Ciclev10026756m	scaffold_7	8310615	8313304
Mf0099		OOthers	-	-	-	-	-	-						No							KmG-06	6.822	JtR-06S		NAT-06S
Mf0098.2	Mf0097.2		-	-	-	-	-	-
Mf0097		AAvailable marker	O	O	-	O	O	O	SI235,SI365					No					AGI-07	44.663	KmG-07	50.959	JtR-07	44.863	NAT-07	3.290	RP-07	46.168
Mf0096		OOthers	-	-	-	-	-	-	SI249,SI333	Ciclev10018252m	scaffold_2	27774863	27778271	C_unshiu_00745:mRNA_6.1	C_unshiu_00745	48150	62370	Hypothetical protein	AGI-06	60.007	KmG-06	22.141	JtR-06S	5.708	NAT-06S	10.082
Mf0095		OOthers	O	-	-	-	-	-	SI290	Ciclev10005778m	scaffold_9	21216748	21221111	C_unshiu_00160:mRNA_34.1	C_unshiu_00160	290257	294371	Transmembrane proteins 14C, putative isoform 1			KmG-032		JtR-031	11.958			RP-03	43.323
Mf0094		AAvailable marker	-	-	-	-	O	O		Ciclev10026594m	scaffold_7	3721375	3722616	C_unshiu_00169:mRNA_29.1	C_unshiu_00169	217948	219072	Maternal effect embryo arrest protein	AGI-02	67.666	KmG-02	52.124	JtR-02	25.334
Mf0093			-	-	-	-	-	-		Ciclev10005964m	scaffold_9	22732690	22736939
Mf0092		AAvailable marker	-	-	-	-	O	O	SI138	Ciclev10012056m	scaffold_6	21137783	21142157	C_unshiu_00052:mRNA_27.2	C_unshiu_00052	168316	172622	Phosphopyruvate hydratase	AGI-04	59.190	KmG-04	30.795			NAT-04	11.576
Mf0091			-	-	-	-	-	-		Ciclev10019105m	scaffold_3	6748406	6756264
Mf0090		AAvailable marker	-	O	-	-	O	O		Ciclev10025866m	scaffold_7	17201236	17204282	C_unshiu_00421:mRNA_21.2	C_unshiu_00421	196945	199790	Actin	AGI-02	25.869	KmG-02	11.182	JtR-02	3.182			RP-02	8.191
Mf0089			-	-	-	-	-	-		Ciclev10031989m	scaffold_4	12678671	12681681
Mf0088		OOthers	O	-	-	-	-	-		Ciclev10001453m	scaffold_5	5104067	5106917	C_unshiu_00108:mRNA_11.1	C_unshiu_00108	101283	105493	60S ribosomal protein L3									RP-09
Mf0087			-	-	-	-	-	-		Ciclev10023194m	scaffold_3	32063430	32064847
Mf0086		AAvailable marker	O	-	-	-	O	O	SI220,SI315	Ciclev10009756m	scaffold_1	25592494	25593617	C_unshiu_00066:mRNA_75.1	C_unshiu_00066	500992	501833	17.9 kDa class II heat shock protein	AGI-01	26.428	KmG-01	19.692	JtR-01S	57.666			RP-01	69.936
Mf0085			-	-	-	-	-	-		Ciclev10018526m	scaffold_3	28293142	28298913
Mf0084		OOthers	-	-	-	-	-	-	SI383	Ciclev10012898m	scaffold_6	40381	43868	C_unshiu_01371:mRNA_1.1	C_unshiu_01371	17746	21242	ADP-ribosylation factor A1F	AGI-04	114.409	KmG-04	66.806	JtR-04	11.413
Mf0083		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10015092m	scaffold_2	33837403	33842156	No					AGI-06	39.963
Mf0082			-	-	-	-	-	-		Ciclev10000921m	scaffold_5	15445701	15450041
Mf0081.2	Mf0080.2	OOthers	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663
Mf0080		MDisagree by Marco analysis	-	-	-	-	-	-		Ciclev10021936m	scaffold_3	44202968	44205663	C_unshiu_00217:mRNA_35.1	C_unshiu_00217	286418	288656	Transmembrane BAX inhibitor motif-containing protein 4	AGI-05	55.049	KmG-05S	64.740	JtR-05	38.503			RP-04	37.046
Mf0079		AAvailable marker	O	-	-	-	O	O	SI067	Ciclev10028839m	scaffold_8	24721937	24724569	C_unshiu_00984:mRNA_8.1	C_unshiu_00984	55676	58212	Cinnamoyl CoA reductase	AGI-08	3.409	KmG-08				NAT-082
Mf0078			-	-	-	-	-	-		Ciclev10001800m	scaffold_5	17564729	17565994
Mf0077			-	-	-	-	-	-		Ciclev10001792m	scaffold_5	39828396	39834822
Mf0076		AAvailable marker	-	-	-	-	O	O		Ciclev10012554m	scaffold_6	11704199	11706676	C_unshiu_00207:mRNA_15.1	C_unshiu_00207	132539	134984	Cytosolic ascorbate peroxidase	AGI-08	93.624
Mf0075			-	-	-	-	-	-
Mf0074			-	-	-	-	-	-		Ciclev10008734m	scaffold_1	6617921	6622625
Mf0073		HDisagree on Clementine haploid genotype	-	-	-	-	-	-						C_unshiu_00069:mRNA_5.1	C_unshiu_00069	25589	28375	Hypothetical protein					JtR-05	38.749	NAT-05	44.567
Mf0072		AAvailable marker	-	-	-	-	O	O		Ciclev10013297m	scaffold_6	13750671	13752605	C_unshiu_00155:mRNA_3.1	C_unshiu_00155	17608	19347	Hypothetical protein	AGI-04	91.104	KmG-04	58.483					RP-04	8.126
Mf0071			-	-	-	-	-	-		Ciclev10001084m	scaffold_5	39480647	39484776
Mf0070		MDisagree by Marco analysis	O	-	-	-	-	-	SI017	Ciclev10017346m	scaffold_2	3067337	3069249	C_unshiu_00246:mRNA_8.1	C_unshiu_00246	68251	69988	Hypothetical protein	AGI-07	36.616			JtR-07	52.611			RP-07	19.079
Mf0069			-	-	-	-	-	-		Ciclev10013297m	scaffold_6	13750671	13752605
Mf0068			-	-	-	-	-	-		Ciclev10023101m	scaffold_3	2718186	2719011
Mf0067		OOthers	-	-	-	-	-	-		Ciclev10008855m	scaffold_1	7264569	7269002	C_unshiu_00837:mRNA_9.1	C_unshiu_00837	91807	96079	Protein phosphatase 1 regulatory subunit pprA			KmG-032	18.460	JtR-031	13.247
Mf0066			-	-	-	-	-	-
Mf0065			-	-	-	-	-	-		Ciclev10021816m	scaffold_3	32925664	32929662
Mf0064			-	-	-	-	-	-		Ciclev10015846m	scaffold_2	27344587	27346090
Mf0063			-	-	-	-	-	-		Ciclev10006352m	scaffold_9	30456144	30458784
Mf0062			-	-	-	-	-	-		Ciclev10009010m	scaffold_1	26773396	26776856
Mf0061			-	-	-	-	-	-
Mf0060			-	-	-	-	-	-						C_unshiu_00715:mRNA_6.1	C_unshiu_00715	29601	30242	Hypothetical protein					JtR-07	56.497
Mf0059			-	-	-	-	-	-		Ciclev10032222m	scaffold_4	1586790	1589604
Mf0058		T3 or more alleleic model	-	-	-	-	-	-		Ciclev10022378m	scaffold_3	46818817	46822856	C_unshiu_00053:mRNA_58.1	C_unshiu_00053	481338	485184	Nitrogen regulatory protein P-II	AGI-08	57.196			JtR-05	39.516
Mf0057		OOthers	-	-	-	-	-	-		Ciclev10002349m	scaffold_5	42489684	42491501	No
Mf0056.2	Mf0055.2		-	-	-	-	-	-		Ciclev10022212m	scaffold_3	45551345	45552620
Mf0055		DDominant marker	-	-	-	-	O	O		Ciclev10022212m	scaffold_3	45551345	45552620	C_unshiu_01674:mRNA_4.1	C_unshiu_01674	17777	28549	Hypothetical protein	AGI-05	57.948	KmG-05S	75.866	JtR-05	38.749	NAT-05	39.573
Mf0054			-	-	-	-	-	-
Mf0052.2			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032
Mf0052			-	-	-	-	-	-		Ciclev10005897m	scaffold_9	28054214	28056032	C_unshiu_01194:mRNA_11.1	C_unshiu_01194	83573	84813	Envelope glycoprotein
Mf0051			-	-	-	-	-	-		Ciclev10012294m	scaffold_6	15434942	15438427
Mf0050			-	-	-	-	-	-		Ciclev10010044m	scaffold_1	6227617	6228389
Mf0049			-	-	-	-	-	-
Mf0048			-	-	-	-	-	-		Ciclev10014833m	scaffold_2	35204970	35210387
Mf0047		DDominant marker	-	-	-	-	-	-		Ciclev10006308m	scaffold_9	1685407	1687081	C_unshiu_00036:mRNA_24.2	C_unshiu_00036	126753	128428	Late embryogenesis abundant protein Lea5-D	AGI-03	14.323	KmG-031	7.139			NAT-03	50.708
Mf0046			-	-	-	-	-	-		Ciclev10009632m	scaffold_1	22844241	22846485
Mf0045			-	-	-	-	-	-		Ciclev10009632m	scaffold_1	22844241	22846485
Mf0044			-	-	-	-	-	-		Ciclev10004832m	scaffold_9	28081760	28084212
Mf0041		AAvailable marker	-	-	-	-	O	O		Ciclev10022012m	scaffold_3	45076821	45080633	C_unshiu_00069:mRNA_16.1	C_unshiu_00069	123654	127483	Histidine-containing phosphotransfer protein 1	AGI-05	56.534	KmG-05S	73.977	JtR-05	38.393
Mf0040			-	-	-	-	-	-		Ciclev10002354m	scaffold_5	42809560	42811717
Mf0039		AAvailable marker	O	-	-	-	O	O	SI016,SI147					C_unshiu_00343:mRNA_25.1	C_unshiu_00343	221381	224081	PLAC8 family protein	AGI-05	5.510	KmG-05S	5.643	JtR-05	10.014
Mf0038			-	-	-	-	-	-
Mf0037			-	-	-	-	-	-
Mf0035			-	-	-	-	-	-
Mf0034		OOthers	O	-	-	-	-	-		Ciclev10031304m	scaffold_4	1559490	1563887	C_unshiu_00012:mRNA_100.1	C_unshiu_00012	732963	736971	DEAD-box ATP-dependent RNA helicase 27									RP-07	73.631
Mf0033		AAvailable marker	-	-	-	-	O	O		Ciclev10010044m	scaffold_1	6227617	6228389	C_unshiu_00075:mRNA_11.1	C_unshiu_00075	123779	124531	Hypothetical protein	AGI-01	62.570	KmG-01	46.353	JtR-01S	106.811	NAT-01S	77.905
Mf0032		OOthers	-	-	-	-	-	-		Ciclev10013688m	scaffold_6	16004467	16005081
Mf0031	Mf0030.2		-	-	-	-	-	-
Mf0029	Mf0028.2	Bno homozygous cultivar with minor allele	-	-	-	-	-	-
Mf0027	Mf0026.2		-	-	-	-	-	-		Ciclev10006081m	scaffold_9	900723	902354
Mf0025			-	-	-	-	-	-		Ciclev10009756m	scaffold_1	25592494	25593617
Mf0024	Mf0023.2		-	-	-	-	-	-		Ciclev10029499m	scaffold_8	19546541	19549348
Mf0022	Mf0021.2		-	-	-	-	-	-
Mf0020			-	-	-	-	-	-		Ciclev10023252m	scaffold_3	2645845	2647776	No													SA-05	30.880
Mf0019	Mf0018.2		-	-	-	-	-	-		Ciclev10032864m	scaffold_4	12356081	12357713
Mf0017		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10021897m	scaffold_3	7337405	7339222	C_unshiu_00199:mRNA_11.1	C_unshiu_00199	77240	79028	Expansin	AGI-05	44.674
Mf0016			-	-	-	-	-	-		Ciclev10002951m	scaffold_5	33411667	33413970
Mf0015		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10000510m	scaffold_5	35125019	35129817	No
Mf0014			-	-	-	-	-	-
Mf0013			-	-	-	-	-	-
Mf0012		AAvailable marker	-	-	-	-	-	O	SI131	Ciclev10019300m	scaffold_3	26517176	26525778	No
Mf0011			-	-	-	-	-	-
Mf0010		Bno homozygous cultivar with minor allele	-	-	-	-	-	-	SI048,SI149	Ciclev10032902m	scaffold_4	19467669	19468803	C_unshiu_00099:mRNA_4.1	C_unshiu_00099	12446	13357	30S ribosomal protein 3, chloroplastic	AGI-07	55.503	KmG-07	42.271	JtR-07	35.215	NAT-07
Mf0009			-	-	-	-	-	-
Mf0008		OOthers	-	-	-	-	-	-						No													RP-06.2
Mf0007		ULess informative for main cultivars	-	-	-	-	-	-		Ciclev10008907m	scaffold_1	17471330	17472833	C_unshiu_00044:mRNA_52.1	C_unshiu_00044	424343	425685	NADPH-dependent codeinone reductase-like protein
Mf0006			-	-	-	-	-	-		Ciclev10010036m	scaffold_1	17554790	17556053
Mf0005			-	-	-	-	-	-
Mf0004			-	-	-	-	-	-
Mf0003		AAvailable marker	-	-	-	-	-	O	SI228
Mf0002			-	-	-	-	-	-		Ciclev10024637m	scaffold_3	41697052	41697860
Mf0001		OOthers	-	-	-	-	-	-
Lp0301.2			-	-	-	-	-	-		Ciclev10020671m	scaffold_3	35321971	35324490
Lp0237	Lp0237.k		-	-	-	-	-	-		Ciclev10007524m	scaffold_1	25987803	25992258	C_unshiu_00066:mRNA_23.1	C_unshiu_00066	112710	117006	Pyrophosphate-energized vacuolar membrane proton pump	AGI-01	29.815	KmG-01	13.444	JtR-01S	57.629	NAT-01S	8.967
Lp0236			O	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Lp0235			O	-	-	-	-	-		Ciclev10019848m	scaffold_3	9466071	9468445	C_unshiu_00227:mRNA_19.1	C_unshiu_00227	186549	194369	Nepenthesin II	AGI-05	43.412							RP-05	44.731
Lp0234			-	-	-	-	-	-		Ciclev10030998m	scaffold_4	17143350	17147918
Lp0232			O	-	-	-	-	-		Ciclev10030590m	scaffold_4	21120135	21127140	C_unshiu_00010:mRNA_105.1	C_unshiu_00010	751317	757205	CHASE-domain containing histidine kinase 1									RP-07	19.079
Lp0231			-	-	-	-	-	-		Ciclev10011809m	scaffold_6	6265278	6272266
Lp0230			O	-	-	-	-	-		Ciclev10009651m	scaffold_1	20094575	20097443
Lp0229			O	-	-	-	-	-		Ciclev10015636m	scaffold_2	24637053	24639946	C_unshiu_00136:mRNA_24.1	C_unshiu_00136	221432	223640	ARM repeat superfamily protein									RP-06.1	25.198
Lp0228			-	-	-	-	-	-		Ciclev10029373m	scaffold_8	5159428	5162015
Lp0227			-	-	-	-	-	-		Ciclev10009468m	scaffold_1	28429428	28433154
Lp0226			O	-	-	-	-	-	SI210	Ciclev10027999m	scaffold_8	2831832	2837109	C_unshiu_00152:mRNA_19.1	C_unshiu_00152	138714	144356	Embryonic polyadenylate-binding protein	AGI-08	73.527
Lp0225			-	-	-	-	-	-		Ciclev10020487m	scaffold_3	35943915	35948556
Lp0224			-	-	-	-	-	-		Ciclev10031564m	scaffold_4	9627760	9633617
Lp0223			-	-	-	-	-	-		Ciclev10000876m	scaffold_5	40154569	40160983
Lp0222			-	-	-	-	-	-		Ciclev10011623m	scaffold_6	22819212	22821782
Lp0221			-	-	-	-	-	-		Ciclev10015663m	scaffold_2	32960362	32966170
Lp0220			O	-	-	-	-	-		Ciclev10000749m	scaffold_5	39221210	39227401	C_unshiu_00495:mRNA_21.1	C_unshiu_00495	125230	136174	Hypothetical protein	AGI-07	14.968
Lp0219			-	-	-	-	-	-		Ciclev10032329m	scaffold_4	6128952	6131314	C_unshiu_01202:mRNA_8.1	C_unshiu_01202	57691	60017	Acyl-CoA N-acyltransferases superfamily protein isoform 1	AGI-01	61.636					NAT-01S	60.000
Lp0218			O	-	-	-	-	-		Ciclev10006429m	scaffold_9	883603	885249
Lp0217			-	-	-	-	-	-		Ciclev10032654m	scaffold_4	18274171	18276675
Lp0216			-	-	-	-	-	-		Ciclev10000670m	scaffold_5	8440416	8447120
Lp0215			-	-	-	-	-	-		Ciclev10019069m	scaffold_3	3919656	3924283
Lp0214			-	-	-	-	-	-		Ciclev10004881m	scaffold_9	17070431	17072209
Lp0213			-	-	-	-	-	-		Ciclev10012814m	scaffold_6	21537952	21540938
Lp0212			O	-	-	-	-	-		Ciclev10030930m	scaffold_4	22697056	22699336	C_unshiu_00004:mRNA_48.1	C_unshiu_00004	381547	383756	Polygalacturonase 1 beta-like protein 3	AGI-07	69.544
Lp0211			O	-	-	-	-	-		Ciclev10009567m	scaffold_1	25816949	25818472	C_unshiu_00066:mRNA_48.1	C_unshiu_00066	279404	280861	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1	AGI-01	30.175							RP-01	24.533
Lp0210			-	-	-	-	-	-		Ciclev10012425m	scaffold_6	17651466	17653457
Lp0209			-	-	-	-	-	-
Lp0208			-	-	-	-	-	-		Ciclev10018482m	scaffold_3	45704361	45713084	C_unshiu_00326:mRNA_24.1	C_unshiu_00326	146528	154002	ABC transporter C family member 3	AGI-03	15.136					NAT-03	28.397
Lp0207			O	-	-	-	-	-		Ciclev10021695m	scaffold_3	6140332	6142252	C_unshiu_01103:mRNA_8.1	C_unshiu_01103	67531	69104	Protein ODORANT1	AGI-05	45.374							RP-05	25.010
Lp0206			O	-	-	-	-	-		Ciclev10011764m	scaffold_6	20836509	20840107	C_unshiu_00052:mRNA_56.1	C_unshiu_00052	452105	455631	Monodehydroascorbate reductase	AGI-04	58.655
Lp0205			-	-	-	-	-	-		Ciclev10008932m	scaffold_1	4541676	4543982
Lp0204			-	-	-	-	-	-		Ciclev10008687m	scaffold_1	24523400	24526186
Lp0203			-	-	-	-	-	-		Ciclev10015577m	scaffold_2	27167289	27171203
Lp0202			O	-	-	-	-	-		Ciclev10006509m	scaffold_9	3131006	3134438	C_unshiu_00051:mRNA_31.2	C_unshiu_00051	239802	243699	NEDD8-activating enzyme E1 catalytic subunit	AGI-03	23.085
Lp0201			-	-	-	-	-	-		Ciclev10028459m	scaffold_8	23365481	23369843
Lp0145			-	-	-	-	-	-						C_unshiu_01491:mRNA_8.1	C_unshiu_01491	47122	50568	Class I glutamine amidotransferase superfamily protein			KmG-05S	40.802	JtR-05
Lp0144			-	-	-	-	-	-		Ciclev10027174m	scaffold_7	9452114	9461436
Lp0143		Bno homozygous cultivar with minor allele	-	-	-	-	-	-		Ciclev10019139m	scaffold_3	6076949	6080875	C_unshiu_00159:mRNA_40.1	C_unshiu_00159	339926	343475	Translation elongation factor G	AGI-05	45.297			JtR-05	18.056
Lp0142			-	-	-	-	-	-		Ciclev10032977m	scaffold_4	2976873	2978308
Lp0141			-	-	-	-	-	-		Ciclev10016648m	scaffold_2	22386727	22388706
Lp0140		MDisagree by Marco analysis	O	-	-	-	-	-		Ciclev10016399m	scaffold_2	32629908	32634194	C_unshiu_00070:mRNA_52.1	C_unshiu_00070	393864	397918	Universal stress protein A-like protein			KmG-02	12.229	JtR-02	2.765			RP-02	8.172
Lp0139			-	-	-	-	-	-		Ciclev10021991m	scaffold_3	1470163	1473304
Lp0138			-	-	-	-	-	-		Ciclev10008908m	scaffold_1	2599957	2603377
Lp0137			-	-	-	-	-	-		Ciclev10021187m	scaffold_3	39657613	39660222
Lp0136			-	-	-	-	-	-		Ciclev10014127m	scaffold_2	10500879	10504450
Lp0135			-	-	-	-	-	-		Ciclev10002870m	scaffold_5	39412819	39414334	C_unshiu_00457:mRNA_3.1	C_unshiu_00457	27521	28982	Xylem serinease 1-like protein					JtR-05	41.854
Lp0134			-	-	-	-	-	-		Ciclev10007510m	scaffold_1	24480591	24484723
Lp0133		AtAvailable marker	O	-	-	-	O	O		Ciclev10021187m	scaffold_3	39657613	39660222	C_unshiu_00037:mRNA_84.1	C_unshiu_00037	603033	605555	Class I chitinase	AGI-05	48.590	KmG-05S	60.040			NAT-05	26.483	RP-05	65.128
Lp0132			-	-	-	-	-	-		Ciclev10014204m	scaffold_2	5469050	5475142
Lp0131			-	-	-	-	-	-		Ciclev10006247m	scaffold_9	20390517	20391131
Lp0130			-	-	-	-	-	-		Ciclev10008029m	scaffold_1	11512415	11514434
Lp0129			-	-	-	-	-	-		Ciclev10011622m	scaffold_6	25349417	25351949
Lp0128			-	-	-	-	-	-		Ciclev10027734m	scaffold_8	2848884	2853210
Lp0127			-	-	-	-	-	-		Ciclev10029357m	scaffold_8	21374019	21379609
Lp0126		AAvailable marker	O	-	-	-	O	O		Ciclev10025164m	scaffold_7	3946818	3949964	C_unshiu_00801:mRNA_10.1	C_unshiu_00801	97228	100216	Phototropic-responsive NPH3 family protein	AGI-02	65.295	KmG-02	54.892	JtR-02	26.278			RP-02.2
Lp0125			-	-	-	-	-	-		Ciclev10004499m	scaffold_9	11150758	11155385
Lp0124			-	-	-	-	-	-		Ciclev10015245m	scaffold_2	10087523	10092758
Lp0123			-	-	-	-	-	-		Ciclev10000541m	scaffold_5	32889614	32896199
Lp0122		MDisagree by Marco analysis	O	-	-	-	-	-	SI170	Ciclev10026549m	scaffold_7	1309884	1311067	C_unshiu_00218:mRNA_20.1	C_unshiu_00218	98317	107740	Heterogeneous nuclear ribonucleoprotein Q							NAT-02S	69.942	RP-02.2	17.330
Lp0121			-	-	-	-	-	-		Ciclev10017090m	scaffold_2	34829300	34831997
Lp0120			O	-	-	-	-	-		Ciclev10021535m	scaffold_3	50399571	50401808
Lp0119		AAvailable marker	-	-	-	-	O	O	SI276	Ciclev10028631m	scaffold_8	24315720	24317671	C_unshiu_00021:mRNA_65.1	C_unshiu_00021	426040	431920	Hypothetical protein	AGI-08	8.544
Lp0118		MDisagree b

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Target: Genome/map	Scaffold/LG