Citrus CAPS Marker Database

National Agriculture and Food Research Organization
Key word search
  
Target: Genome/map
Scaffold/LG

Locus info Cultivar Idenification SNP info Target on C. clementina (v1.0) Target on C. unshiu (v1.0) AGI map info
(Shimada et al. 2014

Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013.

)
KmMg map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
JtTr map info
(Omura et al. 2003

Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74.

)
Km/O41 map info
(Nakano et al. 2003

Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180

)
Rp/Sa map info
(Ohta et al. 2011

Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307.

)
Locus
name
Locus
name alias
Rank hybrid cultivar
Citrus
collection
O -
Cultivar identifi-
cation manual

O -
Ninomiya et al. 2015

Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133.


O -
Nonaka et al. 2017

Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221.


O -
Graphical map
O -
Genotype

O -
Fujii et al. 2013

Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153.



Transcript ID

Scaffold

Start End Transcript ID

Scaffold

Start End Gene function

AGI LG

AGI cM KmMg LG

KmMg cM JtTr LG

JtTr cM Km/O41 LG
Km/O41 cM Rp/Sa LG

Rp/Sa cM
Tf0001.2 AAvailable marker OOO-OOTP Ciclev10020248mscaffold_386475298652282J C_unshiu_00580:mRNA_10.1C_unshiu_005807511881473Transcription factor BIM1AGI-0541.893
Cp0089 Bno homozygous cultivar with minor allele O-O---TP Ciclev10032543mscaffold_42385883023861090J C_unshiu_00001:mRNA_128.1C_unshiu_00001852968856494CAAX amino terminal protease family proteinAGI-0777.194
Tf0013 OOthers OOO-OOSI161,SI362TP Ciclev10027769mscaffold_81340861013413938J C_unshiu_01226:mRNA_1.1C_unshiu_012262055925720DNA replication licensing factor MCM2AGI-0856.123
Tf0293 AAvailable marker OOO--OTP Ciclev10019219mscaffold_34903144149035202J C_unshiu_00018:mRNA_78.1C_unshiu_00018562898566588Putative anthocyanin regulator
Tf0318 AAvailable marker OOO-OOTP Ciclev10031873mscaffold_41375143313754767J C_unshiu_00240:mRNA_28.2C_unshiu_00240282002285335Transcription factor bHLH137AGI-0737.467
Cp0635 AAvailable marker O-O-OOJ C_unshiu_00337:mRNA_4.1C_unshiu_00337115961530750S ribosomal protein L4AGI-0617.029
Tf0386 AAvailable marker OOO-OOSI044,SI095TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 proteinAGI-0441.367
Tf0419 AAvailable marker OOO--OTP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHY
Tf0420 AAvailable marker OOO-OOTP Ciclev10022018mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green proteinAGI-0537.103
Af1255 ------TP Ciclev10006003mscaffold_92806122128063450
Af1520 ------TP Ciclev10015124mscaffold_273603807367946
Al0215 OOthers ------TP Ciclev10007304mscaffold_12191872621922966J C_unshiu_00595:mRNA_18.1C_unshiu_005958557588636Disease resistance proteinAGI-0138.255
Bf0180 ------TP Ciclev10028147mscaffold_82111280421117215
Cp1050 ------TP Ciclev10032471mscaffold_415378351540818
Fb0346 ------TP Ciclev10021000mscaffold_320024272008126
Lp0024 HDisagree on Clementine haploid genotype O-----SI010,SI302TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QAGI-0274.555RP-02.217.330
Ov0129Ov0129.k ------TP Ciclev10030928mscaffold_427170142719856
Tf0166 ------SI156TP Ciclev10000524mscaffold_51968257919686163J C_unshiu_00050:mRNA_13.1C_unshiu_00050140837153470Hypothetical proteinAGI-09101.351
Tf0442 ------TP Ciclev10029160mscaffold_82315829223161424
Af0001 ------TP Ciclev10033102mscaffold_42519068225192326
Af1256 ------TP Ciclev10008233mscaffold_1940514942972
Af1521 ------TP Ciclev10004680mscaffold_997997469804461
Al0216 ------TP Ciclev10007632mscaffold_173599827369305
Bf0182 O-----TP Ciclev10009454mscaffold_11783133317834889J C_unshiu_00429:mRNA_12.1C_unshiu_0042990883942963-deoxy-D-manno-octulosonate cytidylyltransferaseAGI-0147.439
Cp1056 ------TP Ciclev10012459mscaffold_62002437020027538
Fb0357 O-----SI384TP Ciclev10001633mscaffold_54055022240554434J C_unshiu_00889:mRNA_6.1C_unshiu_008894417551825Hypothetical proteinAGI-0939.104
Lp0025 ------TP Ciclev10009567mscaffold_12581694925818472
Ov0301 Bno homozygous cultivar with minor allele ------SI078TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factorKmG-05S23.526JtR-0519.932RP-0521.590
Tf0167 ------SI230,SI241,SI247TP Ciclev10030998mscaffold_41714335017147918J C_unshiu_00478:mRNA_2.1C_unshiu_004781923227824Sigma factorAGI-0746.244
Tf0443 ------TP Ciclev10012193mscaffold_658867445892919
Af0002 ------TP Ciclev10026803mscaffold_794682459468907
Af1257 ------TP Ciclev10033061mscaffold_42505904525061910
Af1522 ------TP Ciclev10026433mscaffold_715078041510299
Al0217 Bno homozygous cultivar with minor allele ------SI350TP Ciclev10022061mscaffold_312033571206483NoKmG-05SJtR-0525.182
Bf0183 O-----SI308TP Ciclev10005208mscaffold_952544165256826J C_unshiu_01106:mRNA_9.1C_unshiu_011067727579234Hypothetical protein
Cp1067 ------TP Ciclev10014572mscaffold_2188504192741
Fb0364 AAvailable marker ----OOSI373TP Ciclev10022215mscaffold_31381049713813004J C_unshiu_00542:mRNA_3.1C_unshiu_005421594018433Nascent polypeptide-associated complex subunit alpha-like proteinAGI-0541.306KmG-05S55.482JtR-0539.609RP-0556.834
Lp0026 ------TP Ciclev10030880mscaffold_433232093331825
Ov0302Ov0301.2 ------TP Ciclev10021068mscaffold_353601135362918J C_unshiu_00442:mRNA_18.1C_unshiu_00442163615166153Transcription factor
Tf0168 AAvailable marker OO-OOOSI175TP Ciclev10007563mscaffold_12489876924905716J C_unshiu_00341:mRNA_22.1C_unshiu_00341170777178753AT-rich interactive domain-containing protein 4AGI-0125.752
Tf0444 ------TP Ciclev10029022mscaffold_81057467310578797
Af0003 ------TP Ciclev10017107mscaffold_21137356511374539
Af1258 ------TP Ciclev10029223mscaffold_82459140924594117
Af1523 ------TP Ciclev10031240mscaffold_462314926235447
Al0218.2 ------TP Ciclev10022061mscaffold_312033571206483
Bf0184 O-----TP Ciclev10021248mscaffold_32489355124898675J C_unshiu_00286:mRNA_27.1C_unshiu_00286216376220366Cysteine protease ATG4BAGI-0541.306
Cp1081 ------TP Ciclev10024992mscaffold_778266037829404
Fb0365 O-----SI036,SI320TP Ciclev10026391mscaffold_72087246220874659J C_unshiu_00098:mRNA_41.1C_unshiu_00098264947272086Hypothetical proteinAGI-0231.596KmG-02JtR-02-4.953
Lp0027 ------TP Ciclev10032174mscaffold_41496725414971449
Ov0303 ------TP Ciclev10011600mscaffold_62516085125164999
Tf0169 ------TP Ciclev10004115mscaffold_922844842302268
Tf0445 ------TP Ciclev10029260mscaffold_860650926068908
Af0004 O-----TP Ciclev10025125mscaffold_784474148453714J C_unshiu_00290:mRNA_10.1C_unshiu_0029083615110154Hypothetical proteinAGI-022.847
Af1259 ------TP Ciclev10030701mscaffold_41552885115538252
Af1524 ------TP Ciclev10025757mscaffold_793253199327565
Al0219 ------TP Ciclev10028236mscaffold_8793820798369
Bf0189 ------J C_unshiu_00008:mRNA_66.1C_unshiu_00008372226374586FerritinRP-0415.774
Cp1084 OOthers ------J C_unshiu_01090:mRNA_3.1C_unshiu_010902308426817Sesquiterpene synthaseAGI-0844.577
Fb0369 ------TP Ciclev10019885mscaffold_377921887795727J C_unshiu_01545:mRNA_3.1C_unshiu_015453755939424AT-rich interactive domain-containing protein 2AGI-0544.172KmG-05S30.809JtR-0516.246
Lp0028 ------TP Ciclev10014842mscaffold_22236254822366644
Ov0304 ------TP Ciclev10000702mscaffold_564823666484923
Tf0170 ------TP Ciclev10005681mscaffold_93123708931243866
Tf0446 ------TP Ciclev10020000mscaffold_34299025142995979
Af0005 ------TP Ciclev10005894mscaffold_924528532455181
Af1260 ------TP Ciclev10001188mscaffold_53886966638875561
Af1525 ------TP Ciclev10032893mscaffold_436366673641089
Al0220 ------TP Ciclev10008097mscaffold_136835373688814
Bf0193 O-----SI100,SI109TP Ciclev10014811mscaffold_23597057735973973J C_unshiu_00077:mRNA_15.2C_unshiu_00077102078105358Scarecrow-like transcription factor PAT1RP-06.214.065
Cp1085 ------TP Ciclev10025935mscaffold_723900102391658J C_unshiu_00025:mRNA_42.1C_unshiu_00025337060338142Putative geranylgeranyl pyrophosphate synthase 3-likeAGI-0270.082
Fb0372 ------SI343,SI052TP Ciclev10002666mscaffold_53512321335124730J C_unshiu_00042:mRNA_34.1C_unshiu_00042237022238272Ubiquitin-fold modifier-conjugating enzyme 1AGI-0959.896
Lp0029 ------TP Ciclev10003645mscaffold_5329518331024
Ov0305 MDisagree by Marco analysis O-----SI028,SI292TP Ciclev10012499mscaffold_61690949216912088J C_unshiu_00008:mRNA_65.1C_unshiu_0000836694336950440S ribosomal protein S4AGI-0888.433KmG-0445.755RP-0415.410
Tf0171 ------TP Ciclev10030688mscaffold_42546662925472365
Tf0447 ------TP Ciclev10021000mscaffold_320024272008126
Af0006 ------TP Ciclev10001011mscaffold_53688310336887975
Af1261 ------TP Ciclev10027978mscaffold_82032100320329872
Af1526 ------TP Ciclev10001454mscaffold_53885254738855263
Al0221 ------
Bf0195 ------SI369TP Ciclev10000780mscaffold_53106923731075092J C_unshiu_00422:mRNA_5.1C_unshiu_004223532240511Sodium/hydrogen exchanger 2AGI-0974.076
Cp1086 ------TP Ciclev10025935mscaffold_723900102391658
Fb0373 O-----TP Ciclev10000030mscaffold_564044636435349J C_unshiu_00034:mRNA_15.1C_unshiu_00034150102178260ATP-dependent RNA helicase DHX29AGI-0985.810KmG-0922.909JtR-09S7.995RP-090.104
Lp0030 ------TP Ciclev10031831mscaffold_42318570323187916
Ov0306 OOthers ------SI382TP Ciclev10026199mscaffold_7224443227133NoAGI-0279.663KmG-0272.516JtR-028.671NAT-02S60.000
Tf0172 O-----TP Ciclev10026400mscaffold_799766219980176J C_unshiu_00496:mRNA_5.1C_unshiu_004964806950951Auxin-induced protein IAA6AGI-0210.638
Tf0448 ------TP Ciclev10026715mscaffold_7252320254049
Af0007 ------TP Ciclev10031118mscaffold_41701458217026325
Af1262 ------TP Ciclev10009571mscaffold_12842457628427136
Af1527 ------TP Ciclev10033122mscaffold_41717504117177917
Al0222 ------TP Ciclev10015548mscaffold_23060799630610863
Bf0197 ------TP Ciclev10025476mscaffold_756543765658039
Cp1093 ------TP Ciclev10009636mscaffold_11669697916699623
Fb0374 ------TP Ciclev10002014mscaffold_567773226781162
Lp0031 ------TP Ciclev10027944mscaffold_82226140822266208J C_unshiu_00639:mRNA_5.1C_unshiu_006394532149901N-terminal isoform 1AGI-089.183
Ov0307 OOthers ------TP Ciclev10015790mscaffold_249370474940138
Tf0173 O-----TP Ciclev10015413mscaffold_22609734326099320J C_unshiu_00259:mRNA_35.1C_unshiu_00259219790227265Hypothetical proteinRP-06.128.110
Tf0449 OOthers O-----TP Ciclev10009165mscaffold_12825430728257305J C_unshiu_01997:mRNA_4.1C_unshiu_019973253935330Translation initiation factor IF-3AGI-010.404
Af0008 ------TP Ciclev10017323mscaffold_23274906432749699
Af1263 ------TP Ciclev10005448mscaffold_92849434828496251
Af1528 ------TP Ciclev10009892mscaffold_116763681677018
Al0223 ------TP Ciclev10011771mscaffold_61743827017440122J C_unshiu_00008:mRNA_127.1C_unshiu_00008890026891371CBL-interacting serine/threonine-protein kinase 11RP-0417.965
Bf0200 OOthers ------SI335TP Ciclev10014367mscaffold_22902243329030724J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1
Cp1111 MDisagree by Marco analysis ------TP Ciclev10024860mscaffold_786034508610239J C_unshiu_00290:mRNA_28.1C_unshiu_00290241335248051Cell division protein ftsH, putative isoform 1AGI-025.054
Fb0389 ------TP Ciclev10014121mscaffold_22517966825188103J C_unshiu_00087:mRNA_31.1C_unshiu_00087209767218135Putative pesticidal crystal cry8Ba-likeAGI-0856.850
Lp0032 Bno homozygous cultivar with minor allele ------SI286J C_unshiu_00679:mRNA_13.1C_unshiu_00679124222132199CwfJ-like family protein, putative isoform 1
Ov0308 ------TP Ciclev10032476mscaffold_41673015016735004
Tf0175 ------TP Ciclev10010825mscaffold_150545515056146
Tf0450 ------TP Ciclev10021535mscaffold_35039957150401808
Af0009 ------TP Ciclev10024461mscaffold_35040602850412944
Af1264 ------TP Ciclev10026609mscaffold_71853934718543298
Af1529 ------TP Ciclev10005711mscaffold_92122879121231253
Al0224 AAvailable marker -O--OOTP Ciclev10015872mscaffold_22663015426632900J C_unshiu_00262:mRNA_19.1C_unshiu_00262115955118351Probable xyloglucan endotransglucosylase/hydrolase protein 27AGI-0667.116KmG-0617.100JtR-06S3.805NAT-06S8.025RP-06.128.576
Bf0201 ------TP Ciclev10015180mscaffold_22937056029376244
Cp1113 ------TP Ciclev10004638mscaffold_9987368992630
Fb0423 O-----TP Ciclev10020919mscaffold_3867235871452
Lp0033 ------TP Ciclev10016127mscaffold_23092339830926574
Ov0309 ------TP Ciclev10022230mscaffold_380786098083078
Tf0176 ------TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical proteinRP-01
Tf0451 ------TP Ciclev10011164mscaffold_61469451314700102
Af0010 ------TP Ciclev10004080mscaffold_54029749240299711
Af1265 ------TP Ciclev10031646mscaffold_42278910422792252
Af1530 ------TP Ciclev10013041mscaffold_62009203320095946
Al0225 ------TP Ciclev10001539mscaffold_54109372541097411J C_unshiu_01543:mRNA_6.1C_unshiu_015433410635343DNA glycosylase superfamily proteinKmG-019.277
Bf0202 ------TP Ciclev10000607mscaffold_52410375324107361J C_unshiu_00011:mRNA_55.1C_unshiu_00011511309514460Protein ETHYLENE INSENSITIVE 3RP-0927.641
Cp1114 ------TP Ciclev10004644mscaffold_9870926875408
Fb0478 ------TP Ciclev10008010mscaffold_11459224814596429J C_unshiu_00071:mRNA_18.1C_unshiu_00071196512200666Beta-glucosidase 44AGI-0161.025
Lp0034 ULess informative for main cultivars O-----J C_unshiu_00087:mRNA_54.1C_unshiu_00087395005398280Peroxisomal membrane protein 13
Ov0310 ------TP Ciclev10023404mscaffold_34846339548465325J C_unshiu_00026:mRNA_46.1C_unshiu_00026334715336716Lanatoside 15-O-acetylesteraseKmG-0121.291JtR-01S61.287
Tf0177 ------SI133TP Ciclev10008476mscaffold_1385469388179J C_unshiu_00003:mRNA_163.1C_unshiu_0000312269241232429Hypothetical protein
Tf0452 ------TP Ciclev10014198mscaffold_23174043131747095
Af0011 ------TP Ciclev10025929mscaffold_71135799011362560
Af1266 ------TP Ciclev10032367mscaffold_484003788404853
Af1531 ------TP Ciclev10008796mscaffold_149843404987674
Al0226 ------TP Ciclev10012002mscaffold_625719412573984
Bf0203 ------TP Ciclev10022162mscaffold_34241048242413511
Cp1115 ------TP Ciclev10005600mscaffold_9729077730936
Fb0708 ------TP Ciclev10005455mscaffold_93123708931243737J C_unshiu_00003:mRNA_112.1C_unshiu_00003803488808730Zinc finger CCCH domain-containing protein 32AGI-0374.195JtR-03219.857
Lp0035 ------TP Ciclev10005111mscaffold_92725981327263097
Ov0311 ------TP Ciclev10022001mscaffold_31834116618342395J C_unshiu_00417:mRNA_9.1C_unshiu_004179342694543Kunitz trypsin inhibitorKmG-0410.598NAT-0982.730
Tf0178 ------TP Ciclev10004481mscaffold_972329597238380
Tf0454 AAvailable marker O---OOTP Ciclev10027306mscaffold_71610872316113463J C_unshiu_00371:mRNA_10.1C_unshiu_00371121418127245GATA transcription factorAGI-0221.099
Af0012 ------TP Ciclev10006108mscaffold_924587932459573
Af1267 ------TP Ciclev10023047mscaffold_314653011468225
Af1532 ------TP Ciclev10026374mscaffold_739883663989679
Al0227 ------TP Ciclev10001654mscaffold_54221793542222257
Bf0204 ------SI326TP Ciclev10025089mscaffold_732224833228894J C_unshiu_00084:mRNA_14.1C_unshiu_00084139704145312Zeaxanthin epoxidase, chloroplasticRP-02.29.835
Cp1143 MDisagree by Marco analysis O-----TP Ciclev10000651mscaffold_53985853139862402J C_unshiu_00096:mRNA_9.1C_unshiu_000967071373505Phosphoglycerate dehydrogenaseAGI-0942.158
Fb0722 ------TP Ciclev10008390mscaffold_11609803916100795
Lp0036 ------TP Ciclev10012725mscaffold_61299805513001834
Ov0312 ------TP Ciclev10018858mscaffold_313441921349935J C_unshiu_00541:mRNA_19.1C_unshiu_00541170170175878SpastinSA-098.022
Tf0181 ------TP Ciclev10011164mscaffold_61469451314700102
Tf0455 OOthers O-----TP Ciclev10017004mscaffold_293386519341271J C_unshiu_00067:mRNA_10.1C_unshiu_000677469688429Hypothetical proteinAGI-06114.172
Af0013 ------TP Ciclev10023060mscaffold_31341606113417219
Af1268 ------TP Ciclev10011546mscaffold_62252321322529556
Af1533 ------TP Ciclev10009600mscaffold_12211820322120791
Al0228 ------TP Ciclev10009018mscaffold_12620606326208427J C_unshiu_00315:mRNA_25.1C_unshiu_00315212819220361Serine/threonine-protein kinase HT1JtR-0347.115
Bf0205 O-----SI236TP Ciclev10025925mscaffold_735419243543863J C_unshiu_00301:mRNA_11.1C_unshiu_003015557057462WRKY
Cp1144 OOthers ------TP Ciclev10028086mscaffold_826499912655756J C_unshiu_00152:mRNA_43.1C_unshiu_00152288550294174Sodium:hydrogen antiporter 1 isoform 1AGI-0870.995
Fb0827 O-----SI215,SI301TP Ciclev10004432mscaffold_923534422357780J C_unshiu_00394:mRNA_9.1C_unshiu_003944171945690Chloroplast 1-deoxy-D-xylulose-5-phosphate synthaseAGI-0319.017KmG-03116.544JtR-034
Lp0037 OOthers ------TP Ciclev10025045mscaffold_71896348718968140
Ov0313 OOthers ------TP Ciclev10002372mscaffold_54184498441847835J C_unshiu_00009:mRNA_157.1C_unshiu_0000910134781016014Diphthine synthaseKmG-0979.072
Tf0183 ------TP Ciclev10021488mscaffold_33087388630877367
Tf0456 ------TP Ciclev10020156mscaffold_34485833344862278
Af0014 ------TP Ciclev10023139mscaffold_3253879254627
Af1269 ------TP Ciclev10009375mscaffold_12704312427045483
Af1534 ------TP Ciclev10006429mscaffold_9883603885249
Al0229 ------TP Ciclev10018463mscaffold_34967535449684423
Bf0207 ------TP Ciclev10014190mscaffold_22200578322011411
Cp1162 AAvailable marker ----OOTP Ciclev10001345mscaffold_53590818135912917J C_unshiu_00255:mRNA_35.1C_unshiu_00255260170264872Phosphoribosylaminoimidazolesuccinocarboxamide synthaseAGI-0953.232RP-0969.673
Fb0995 OOthers O-----SI026TP Ciclev10024677mscaffold_711800191202408J C_unshiu_00544:mRNA_10.1C_unshiu_0054497318121662FAT domain-containing proteinAGI-0274.555KmG-0282.954JtR-0210.215
Lp0038 ------TP Ciclev10029808mscaffold_866866026688894
Ov0314 AAvailable marker O---OOSI107TP Ciclev10029386mscaffold_881763718177435J C_unshiu_00728:mRNA_1.1C_unshiu_0072840704922Mannan polymerase complex subunit mnn9AGI-0856.724KmG-0858.356JtR-0821.829RP-0841.217
Tf0184 AAvailable marker O---OOTP Ciclev10019968mscaffold_34539385745398298J C_unshiu_00546:mRNA_8.1C_unshiu_005467502378260Zinc finger CCCH domain-containing protein 3AGI-0557.948
Vs0001 ------
Af0015 ------TP Ciclev10019449mscaffold_34402177944027536J C_unshiu_00217:mRNA_10.1C_unshiu_002178639391294Hypothetical proteinAGI-0554.268
Af1270 ------TP Ciclev10011405mscaffold_61758989517593051
Af1535 ------TP Ciclev10007633mscaffold_12381411523817728
Al0230 ------
Bf0212 ------SI332TP Ciclev10016442mscaffold_292066869211152J C_unshiu_00004:mRNA_52.2C_unshiu_00004401860406444Carbonate dehydrataseAGI-06117.593
Cp1163 ------TP Ciclev10025825mscaffold_71620197116207283
Fb1121Fb1121.lg ------TP Ciclev10014991mscaffold_22263576422640239
Lp0039 ------TP Ciclev10004396mscaffold_92230997022314448
Ov0315 ULess informative for main cultivars ------TP Ciclev10013467mscaffold_62343037523436161J C_unshiu_00098:mRNA_32.2C_unshiu_00098207615213748Putative nuclear matrix constituent protein 1-like proteinKmG-047.092
Tf0185 O-----TP Ciclev10014198mscaffold_23174043131747095
Vs0002 MDisagree by Marco analysis ------SI103,SI115TP Ciclev10000046mscaffold_54118418041190033J C_unshiu_00127:mRNA_46.1C_unshiu_00127341430344325Hypothetical proteinAGI-0936.685KmG-0973.930JtR-0768.221
Af0016 ------TP Ciclev10022861mscaffold_32507416325075916J C_unshiu_00117:mRNA_7.1C_unshiu_001173894940765Hypothetical proteinAGI-0541.306
Af1271 ------TP Ciclev10025653mscaffold_71332358313328683
Af1536 ------TP Ciclev10021945mscaffold_361130496116055
Al0231 ------TP Ciclev10033829mscaffold_41622377116226683J C_unshiu_00086:mRNA_13.1C_unshiu_0008699963109609ShatterproofRP-06.17.272
Bf0213 ------SI097TP Ciclev10000820mscaffold_53769388237699178J C_unshiu_00238:mRNA_2.1C_unshiu_002381447519398DnaJ domain proteinRP-0977.126
Cp1177 ------TP Ciclev10006006mscaffold_941163564117315
Fb1134.2 ------TP Ciclev10030474mscaffold_495477079559498J C_unshiu_00140:mRNA_14.1C_unshiu_00140164689176715DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5AGI-0738.546
Lp0040 Bno homozygous cultivar with minor allele ------TP Ciclev10026107mscaffold_736741563676384J C_unshiu_00169:mRNA_34.1C_unshiu_00169261779263315Transcription factorKmG-0252.181JtR-0225.334
Ov0316 ------TP Ciclev10020995mscaffold_339630243966516J C_unshiu_00318:mRNA_19.1C_unshiu_00318155111158235Zinc finger CCCH domain-containing protein 43JtR-0531.749
Tf0186 ------TP Ciclev10024602mscaffold_353824905385009
Vs0003 AAvailable marker ----OOSI077J C_unshiu_00009:mRNA_117.1C_unshiu_00009675718677501Cysteine proteinase RD19aAGI-0935.312KmG-0972.447NAT-0993.467
Af0017 ------TP Ciclev10029358mscaffold_8313112317158
Af1272 ------TP Ciclev10019689mscaffold_32479635124800588
Af1537 ------TP Ciclev10009797mscaffold_184171588419377
Al0232 ------TP Ciclev10026186mscaffold_749970894999255
Bf0215 ------TP Ciclev10022088mscaffold_35079352050795340
Cp1184 ------TP Ciclev10005685mscaffold_91780995717817998
Fb1170 ------TP Ciclev10014845mscaffold_22382986223832918
Lp0041 AAvailable marker -----OTP Ciclev10006136mscaffold_963547966356630J C_unshiu_00146:mRNA_22.1C_unshiu_0014620527920701450S ribosomal protein L28KmG-03217.549JtR-03114.643RP-0329.608
Ov0317Ov0316.2 ------TP Ciclev10020995mscaffold_339630243966516
Tf0187 ------TP Ciclev10013228mscaffold_619501211950908
Vs0004 ------TP Ciclev10021761mscaffold_320786912083111J C_unshiu_00490:mRNA_23.1C_unshiu_00490182148190847Nucleosome assembly proteinKmG-0651.244
Af0018 ------TP Ciclev10000947mscaffold_54069180140694522
Af1273 ------TP Ciclev10024624mscaffold_31221402912215007
Af1538 ------TP Ciclev10002528mscaffold_53392198433926087
Al0234 OOthers ------TP Ciclev10005909mscaffold_913729721374927J C_unshiu_00369:mRNA_20.1C_unshiu_003697403474546Ribosomal protein L19KmG-0316.974NAT-0347.094RP-033.219
Bf0216 ------TP Ciclev10031058mscaffold_41505892015066775
Cp1196 ------TP Ciclev10031889mscaffold_41962606119629792
Fb1227 ------TP Ciclev10004375mscaffold_933677183376062J C_unshiu_00051:mRNA_60.1C_unshiu_00051463042471084Chloride channel proteinAGI-0319.631
Lp0042 ------TP Ciclev10028234mscaffold_82134205021345004
Ov0318 ULess informative for main cultivars ------TP Ciclev10012779mscaffold_61940528519407278J C_unshiu_00273:mRNA_20.1C_unshiu_0027310325010518340S ribosomal protein S5
Tf0188 ------TP Ciclev10012285mscaffold_61577497615777653
Vs0005 OOthers O-----SI022,SI075TP Ciclev10016009mscaffold_23321683933219042J C_unshiu_00002:mRNA_211.1C_unshiu_0000215118091513915Epoxide hydrolase 2AGI-0631.521KmG-0259.329JtR-06S50.000NAT-06S50.000
Af1003 O-----TP Ciclev10001093mscaffold_51560585215610028J C_unshiu_00533:mRNA_20.1C_unshiu_00533131430141111Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrialAGI-0222.436
Af1274 ------TP Ciclev10009370mscaffold_131525483153983
Af1539 ------TP Ciclev10016688mscaffold_21009730810100347
Al0235 ------TP Ciclev10009395mscaffold_12576157025764926
Bf0218 O-----SI232TP Ciclev10000452mscaffold_53603699036048487J C_unshiu_00406:mRNA_20.1C_unshiu_00406134274145322IsoamylaseAGI-0953.205KmG-0937.847RP-0970.349
Cp1200 MDisagree by Marco analysis O-----J C_unshiu_00810:mRNA_8.1C_unshiu_0081099220102123Myrcene synthase, chloroplasticAGI-0838.604
Fb1430Fb1430.lg O-----TP Ciclev10005994mscaffold_918796751880523J C_unshiu_00102:mRNA_3.1C_unshiu_00102165071733460S ribosome subunit biogenesis protein NIP7 homologAGI-03
Lp0043 OOthers ------TP Ciclev10015870mscaffold_23533424535336841
Ov0319 ------TP Ciclev10009395mscaffold_12576157025764926J C_unshiu_00066:mRNA_53.1C_unshiu_00066333477336681Ubiquitin system component Cue proteinKmG-03219.158
Tf0189 ------TP Ciclev10001738mscaffold_52137938421385293
Vs0006 ULess informative for main cultivars ------TP Ciclev10025343mscaffold_71902429519026021J C_unshiu_00468:mRNA_22.1C_unshiu_00468132124133922Cytochrome P450 78A4AGI-0227.491JtR-0250.216NAT-02S3.328
Af1004 ------TP Ciclev10008926mscaffold_12442676024434342
Af1275 ------TP Ciclev10028274mscaffold_81303517413037307
Af1540 ------TP Ciclev10006242mscaffold_9477388478920
Al0236 ------TP Ciclev10014723mscaffold_23280656532812384
Bf0219 ------TP Ciclev10029243mscaffold_82485146224854925
Cp1201 ------TP Ciclev10031397mscaffold_41941684419420948
Fb1505 ------
Lp0044 ------TP Ciclev10032981mscaffold_42361842423622719
Ov0320 ------TP Ciclev10005968mscaffold_92764007427641178J C_unshiu_00252:mRNA_13.1C_unshiu_00252892819019821 kDa proteinRP-0356.919
Tf0191 ------TP Ciclev10015847mscaffold_258214015825173
Vs0007 ------TP Ciclev10025931mscaffold_712071411210820
Af1005 ------TP Ciclev10012491mscaffold_62071559020719704
Af1276 ------TP Ciclev10022100mscaffold_370802227081373
Af1541 ------TP Ciclev10031567mscaffold_41051001810517939
Al0237 ------TP Ciclev10026739mscaffold_755230755524475
Bf0221 ------TP Ciclev10005970mscaffold_92419518024198282J C_unshiu_00132:mRNA_22.1C_unshiu_00132211597223530Hypothetical proteinAGI-0347.887RP-0337.193
Cp1213 ------TP Ciclev10015476mscaffold_21159899911601307
Fb1567 ------TP Ciclev10022690mscaffold_35063767350640392NoAGI-05103.212
Lp0045 ------
Ov0321 ------TP Ciclev10018918mscaffold_34277647942784038
Tf0193 ------TP Ciclev10007849mscaffold_12716727127171073
Vs0008 ------TP Ciclev10032306mscaffold_4947943949892
Af1006 ------TP Ciclev10005512mscaffold_92466110924664797
Af1277 ------TP Ciclev10030804mscaffold_42381151123814763
Af1542 ------TP Ciclev10015820mscaffold_21042477910427904
Al0238 ------TP Ciclev10017077mscaffold_284943698496454
Bf0224 ------TP Ciclev10012183mscaffold_62224492422252231
Cp1216 AAvailable marker ----OOTP Ciclev10017113mscaffold_21211279012113903J C_unshiu_00026:mRNA_6.1C_unshiu_000264665847677CCR proteinAGI-0676.905
Fb1611 ------SI071TP Ciclev10014570mscaffold_22703018827034752No
Lp0046 ------TP Ciclev10012884mscaffold_62427403124276658
Ov0322 ULess informative for main cultivars ------TP Ciclev10003485mscaffold_53639898836399239J C_unshiu_00241:mRNA_9.1C_unshiu_002413954640639Microsomal signal peptidase 12 kDa proteinAGI-0950.810KmG-0942.179JtR-09S62.873RP-0970.369
Tf0194 ------TP Ciclev10018639mscaffold_34299688643001548
Vs0009 ------
Af1007 ------TP Ciclev10021398mscaffold_31281473112817148
Af1278 ------TP Ciclev10009508mscaffold_169038046908960
Af1543 ------TP Ciclev10022165mscaffold_34218065042183843
Al0239 Bno homozygous cultivar with minor allele ------TP Ciclev10026364mscaffold_71618581816187223J C_unshiu_00371:mRNA_7.1C_unshiu_003715465356423B-box type zinc finger protein, putative
Bf0225 ------TP Ciclev10016071mscaffold_234603703462174
Cp1221 ------TP Ciclev10016867mscaffold_21362765613629444
Fb1678 O-----TP Ciclev10022198mscaffold_360002666002833J C_unshiu_00997:mRNA_6.2C_unshiu_009974442046811Putative axial regulator YABBY 2AGI-0545.297
Lp0047 ------
Ov0323 ------TP Ciclev10005490mscaffold_955491955553148
Tf0195 MDisagree by Marco analysis O-----TP Ciclev10030351mscaffold_86799774191J C_unshiu_01137:mRNA_4.1C_unshiu_011373083736569AT-rich interactive domain-containing protein 3AGI-0887.683
Vs0010 ------TP Ciclev10012145mscaffold_62103591021038368
Af1008 ------TP Ciclev10006973mscaffold_924700852471703
Af1279 ------TP Ciclev10031302mscaffold_41451078714516311
Af1544 ------TP Ciclev10026596mscaffold_726229692624754
Al0240 AAvailable marker ----OOTP Ciclev10028497mscaffold_880334658038415J C_unshiu_00682:mRNA_9.1C_unshiu_006825978663447Hypothetical proteinAGI-0853.867
Bf0226 MDisagree by Marco analysis O-----TP Ciclev10008869mscaffold_12365478523658857J C_unshiu_00175:mRNA_30.1C_unshiu_00175321759325671SEC14 cytosolic factorAGI-0863.341
Cp1223 ------TP Ciclev10019033mscaffold_35055920550563745
Fb1685 ------TP Ciclev10015934mscaffold_23569324935696515
Lp0048 ------TP Ciclev10022383mscaffold_34637429246377587
Ov0324 AAvailable marker -----OTP Ciclev10030198mscaffold_82257584522578398J C_unshiu_01619:mRNA_6.1C_unshiu_016191513924519Hypothetical proteinKmG-0823.615
Tf0196 ------TP Ciclev10025815mscaffold_777965917799786J C_unshiu_01633:mRNA_1.1C_unshiu_01633944211959Hypothetical proteinAGI-024.033
Vs0011 ------TP Ciclev10012145mscaffold_62103591021038368
Af1009 ------TP Ciclev10015365mscaffold_23581832735822366
Af1281 ------TP Ciclev10029683mscaffold_82036663720367616
Af1545 ------TP Ciclev10032524mscaffold_421537182155194
Al0241 ------TP Ciclev10012288mscaffold_61785784917860063
Bf0229 ------SI253TP Ciclev10004848mscaffold_91724221817245901J C_unshiu_00122:mRNA_16.1C_unshiu_00122118693122329Selenium binding proteinAGI-0346.274RP-0337.885
Cp1224 ------TP Ciclev10016280mscaffold_22389181423893095
Fb1751 ------SI264TP Ciclev10025011mscaffold_779775277984425J C_unshiu_00121:mRNA_40.1C_unshiu_00121250743257054Protein STRUBBELIG-RECEPTOR FAMILY 8
Lp0049Lp0049.k ------TP Ciclev10021491mscaffold_35073675050739959
Ov0325 ------TP Ciclev10016692mscaffold_23518059435182774J C_unshiu_00048:mRNA_54.1C_unshiu_00048359734361893SGS domain-containing proteinNAT-08248.374
Tf0197 ------TP Ciclev10012447mscaffold_61480482814808139
Vs0012 Bno homozygous cultivar with minor allele ------
Af1010 ------TP Ciclev10014106mscaffold_23165651031666206
Af1282 ------
Af1546 ------TP Ciclev10016821mscaffold_21240607812408794
Al0242 ------TP Ciclev10032030mscaffold_434375773441367
Bf0232 ------TP Ciclev10031191mscaffold_42186177421865635J C_unshiu_01346:mRNA_3.1C_unshiu_013461820622054T-complex protein 1 subunit deltaAGI-0767.250RP-076.705
Cp1225 ------TP Ciclev10025660mscaffold_71720807517211871
Fb1784 ------TP Ciclev10028959mscaffold_8445469446936J C_unshiu_02466:mRNA_2.1C_unshiu_0246625974055Class I chitinaseRP-0552.311
Lp0101 ------TP Ciclev10002394mscaffold_51599110815996585
Ov0326 ------TP Ciclev10001212mscaffold_52152243321525218
Tf0198 AAvailable marker O----OTP Ciclev10032275mscaffold_42369576623697703J C_unshiu_00001:mRNA_105.2C_unshiu_00001685451687250Homeobox-leucine zipper protein HAT7
Vs0013 ------
Af1011 O-----TP Ciclev10013781mscaffold_62530682925315243J C_unshiu_00009:mRNA_53.1C_unshiu_00009289462299397Hypothetical proteinRP-0460.491
Af1283 ------TP Ciclev10016366mscaffold_22975772329762309
Af1547 ------TP Ciclev10005907mscaffold_938647643867933
Al0243 ------TP Ciclev10013041mscaffold_62009203320095946
Bf0233 MDisagree by Marco analysis O-----SI359TP Ciclev10019826mscaffold_365022316504139J C_unshiu_00521:mRNA_1.1C_unshiu_0052124494274Cytochrome P450 76C2AGI-0542.581RP-0527.235
Cp1252 ------TP Ciclev10000164mscaffold_53061774630629437
Fb1916 ------SI336TP Ciclev10016275mscaffold_21204396912046230J C_unshiu_00026:mRNA_12.1C_unshiu_00026110679112686Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4RP-06.124.027
Lp0102 MDisagree by Marco analysis O-----SI080,SI319,SI360,SI378TP Ciclev10020840mscaffold_33064873230651259J C_unshiu_00759:mRNA_1.1C_unshiu_007599173353Senescence-related gene 1AGI-0542.737KmG-05S41.895JtR-0528.682NAT-0537.917RP-0551.879
Ov0401 MDisagree by Marco analysis O-----TP Ciclev10004762mscaffold_92873600828740315NoKmG-0858.635SA-06
Tf0199 ------SI023,SI157TP Ciclev10000697mscaffold_53099481230999834J C_unshiu_00422:mRNA_12.1C_unshiu_00422116754121159Serine/threonine-protein kinase isoform 2
Vs0014 Bno homozygous cultivar with minor allele ------J C_unshiu_00375:mRNA_10.1C_unshiu_003755051551680Metallothionein
Af1012 ------TP Ciclev10026672mscaffold_71627039416272027
Af1285 ------TP Ciclev10010796mscaffold_11280759712808725
Af1548 ------TP Ciclev10012731mscaffold_62511421325116604
Al0244 ------TP Ciclev10015497mscaffold_298491339852098
Bf0401 ------TP Ciclev10019609mscaffold_33790609037910975
Cp1254 ------TP Ciclev10028147mscaffold_82111280421117215
Fb2130 ------SI069,SI117TP Ciclev10030030mscaffold_82434112924344795J C_unshiu_00021:mRNA_68.1C_unshiu_00021452003461315Hypothetical proteinAGI-0811.809KmG-0811.813
Lp0103 OOthers ------TP Ciclev10012274mscaffold_61639330916395378J C_unshiu_00332:mRNA_15.1C_unshiu_00332142648144673Pyridoxal biosynthesis lyase pdxSRP-0411.437
Ov0402 ------TP Ciclev10011849mscaffold_698475029854667
Tf0200 O-----TP Ciclev10030297mscaffold_82109556921102194
Vs0015 OOthers ------J C_unshiu_00001:mRNA_84.1C_unshiu_00001561308564986Mitochondrial outer membrane protein porin of 34 kDaAGI-09115.452KmG-0934.185JtR-09S15.823
Af1013 ------TP Ciclev10022053mscaffold_34862190948624876
Af1286 ------
Af1549 ------TP Ciclev10009920mscaffold_121845132186967
Al0245 ------TP Ciclev10005107mscaffold_92518520025188839
Bf0402 ------TP Ciclev10020232mscaffold_391372499144663J C_unshiu_00058:mRNA_19.1C_unshiu_00058104866110977TRNA-specific adenosine deaminase-like protein 3AGI-0543.970
Cp1257 ------TP Ciclev10014209mscaffold_255829275587253
Fb2156Fb2156.lg O-----TP Ciclev10000537mscaffold_53999223439996269J C_unshiu_00096:mRNA_31.1C_unshiu_00096198494202358Poly(A) binding protein 6, putative isoform 1AGI-0941.254
Lp0104 ------TP Ciclev10017466mscaffold_22757962727581411
Ov0403 AAvailable marker O---OOSI136,SI298,SI325TP Ciclev10016280mscaffold_22389181423893095J C_unshiu_00081:mRNA_50.1C_unshiu_00081296655297936Chlorophyll a/b binding proteinAGI-0661.779KmG-0612.610JtR-06S
Tf0201 O-----SI195TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1
Vs0016 Bno homozygous cultivar with minor allele ------J C_unshiu_02110:mRNA_3.2C_unshiu_021102766028723MetallothioneinAGI-0525.980KmG-0817.483JtR-08
Af1014 ------TP Ciclev10018683mscaffold_34359463843605172
Af1287 ------TP Ciclev10022137mscaffold_33960112839604586
Af1551 ------TP Ciclev10008489mscaffold_164949736502196
Al0246 ------TP Ciclev10019351mscaffold_34421533344220917
Bf0403 ------
Cp1267 MDisagree by Marco analysis ------TP Ciclev10011346mscaffold_679837887991526J C_unshiu_02325:mRNA_1.1C_unshiu_0232516429359Riboflavin biosynthesis protein RibDAGI-0894.382
Fb2159 ------SI205,SI300TP Ciclev10021136mscaffold_33960643139608387J C_unshiu_00037:mRNA_76.1C_unshiu_00037551437553057Pirin family proteinAGI-0549.856KmG-05S68.781JtR-0541.770SA-09
Lp0105 Bno homozygous cultivar with minor allele O-----SI113,SI163,SI254TP Ciclev10026412mscaffold_7815904817239J C_unshiu_00353:mRNA_13.1C_unshiu_003539203393437Hypothetical proteinAGI-0275.939
Ov0404 AAvailable marker -----OTP Ciclev10002415mscaffold_52976809129769281J C_unshiu_00731:mRNA_6.3C_unshiu_007312659828767Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseKmG-0929.016JtR-09S31.495RP-0929.347
Tf0202 ------TP Ciclev10032893mscaffold_436366673641089
Vs0017 ------TP Ciclev10009470mscaffold_166471586649599
Af1016 ------TP Ciclev10025840mscaffold_723944712397293
Af1288 ------TP Ciclev10016357mscaffold_23580351235805985
Af1552 ------TP Ciclev10005340mscaffold_93052706030531535
Al0247 T3 or more alleleic model O-----TP Ciclev10029281mscaffold_822278272230752J C_unshiu_00024:mRNA_15.1C_unshiu_00024104182106823Somatic embryogenesis receptor kinase 1AGI-0877.316KmG-0891.101NAT-08273.850
Bf0404 ------
Cp1268 ------TP Ciclev10021861mscaffold_373274367329167J C_unshiu_00199:mRNA_13.1C_unshiu_001998713488461Light-harvesting complex I protein subunit a4AGI-0544.864
Gmom01 ------TP Ciclev10000531mscaffold_53327305333276013
Lp0106 ------TP Ciclev10030683mscaffold_42286897822880751
Ov0405 ------TP Ciclev10011509mscaffold_61840685618412391
Tf0203 ------SI121TP Ciclev10014039mscaffold_21045959310472483J C_unshiu_00403:mRNA_13.1C_unshiu_0040388988102135Homeodomain transcriptional regulator
Vs0018 ------TP Ciclev10026149mscaffold_746128874617115
Af1017 O-----TP Ciclev10006402mscaffold_92267155422672639NoAGI-0346.274
Af1289 ------TP Ciclev10001940mscaffold_542898764293681
Af1553 ------TP Ciclev10023028mscaffold_34581258945815067
Al0248 ------TP Ciclev10028483mscaffold_81977979519784134
Bf0405 ------TP Ciclev10024721mscaffold_729945253001770
Cp1278 ------TP Ciclev10030907mscaffold_41226375512266130
Gmom02 ------TP Ciclev10015097mscaffold_243670684371625
Lp0107 ------TP Ciclev10030913mscaffold_42191659221922770
Ov0406 ------TP Ciclev10025329mscaffold_751599955165972
Tf0204 ------TP Ciclev10027848mscaffold_82358970223593390
Vt0001 AAvailable marker ----OOTP Ciclev10014290mscaffold_23562493535628855J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0616.327KmG-0668.041
Af1019 ------TP Ciclev10005635mscaffold_9192512196670
Af1290 ------TP Ciclev10029472mscaffold_82441315724415621
Af1554 ------TP Ciclev10009386mscaffold_12375375923756754J C_unshiu_00080:mRNA_59.1C_unshiu_00080491826492778Protein CWC15AGI-0128.775
Al0249 ------TP Ciclev10004782mscaffold_93049033130496586
Bf0406 ------TP Ciclev10026290mscaffold_71577309115776242
Cp1279 AAvailable marker ----OOTP Ciclev10031414mscaffold_41290077712903692J C_unshiu_00461:mRNA_17.1C_unshiu_00461144878147555Ornithine aminotransferaseAGI-0740.184
Gmom03 ------TP Ciclev10019436mscaffold_318646041871328J C_unshiu_01325:mRNA_3.1C_unshiu_01325787614474Bromo-adjacent-like (BAH) domain proteinAGI-057.888
Lp0108 AAvailable marker -----OTP Ciclev10026340mscaffold_755546195556993J C_unshiu_00761:mRNA_5.1C_unshiu_00761187042107240S ribosomal protein S6KmG-0241.508JtR-0218.351
Ov0407 AAvailable marker ----OOTP Ciclev10000563mscaffold_53704341737051080J C_unshiu_00773:mRNA_1.1C_unshiu_00773788815416OSBP(Oxysterol binding protein)-related protein 1C isoform 3AGI-0946.097KmG-0948.606JtR-09S66.176RP-0976.027
Tf0205 OOthers O-----SI274TP Ciclev10005062mscaffold_91638385116393557J C_unshiu_00094:mRNA_29.1C_unshiu_00094262934272307UBX domain-containing protein 1AGI-0346.274
Vt0002 ------TP Ciclev10032270mscaffold_42086875020872170
Af1021 ------TP Ciclev10022113mscaffold_34066463540665640
Af1291 ------TP Ciclev10026757mscaffold_747794004780310
Af1555 ------TP Ciclev10029189mscaffold_82450207024504031
Al0250 ------TP Ciclev10031445mscaffold_42477075424773948
Bf0407 ------TP Ciclev10011592mscaffold_61072903410731466
Cp1283 ------TP Ciclev10001817mscaffold_53489110034894176
Gmom04 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.504
Lp0109 OOthers O-----TP Ciclev10020902mscaffold_31756112717562695
Ov0408 AAvailable marker -----OTP Ciclev10011522mscaffold_61849178918493623J C_unshiu_00248:mRNA_30.1C_unshiu_00248247183248778UDP-glycosyltransferase 71C4KmG-0450.902RP-0423.745
Tf0206 ------TP Ciclev10005479mscaffold_92316129423166939
Vt0003 ------TP Ciclev10027667mscaffold_881536608174407J C_unshiu_00616:mRNA_3.1C_unshiu_006161080818470Hypothetical proteinAGI-0856.724
Af1022 ------TP Ciclev10022479mscaffold_384864918488997
Af1292 ------TP Ciclev10026736mscaffold_766773146680214
Af1556 ------TP Ciclev10026643mscaffold_71110704111109191J C_unshiu_01501:mRNA_6.1C_unshiu_015015729159154Lactoylglutathione lyase/glyoxalase I family proteinAGI-0211.728
Al0251 ------TP Ciclev10021340mscaffold_366951716697430
Bf0408 ------TP Ciclev10024877mscaffold_748431574848614
Cp1292 ------TP Ciclev10025390mscaffold_722467322249558
Gmom05 ------TP Ciclev10024623mscaffold_33372293433727855
Lp0110 ------TP Ciclev10009769mscaffold_12427175324272644
Ov0409 ------TP Ciclev10022219mscaffold_347360474740432
Tf0207 ------TP Ciclev10014026mscaffold_290089209021876
Vt0004 ------TP Ciclev10005408mscaffold_998058999809222
Af1023 ------TP Ciclev10028042mscaffold_827196542725331
Af1293 ------TP Ciclev10014998mscaffold_21659779616602257
Af1558 ------TP Ciclev10005504mscaffold_92960846229612474
Al0252 ------TP Ciclev10028251mscaffold_82468998924692884
Bf0409 ------J C_unshiu_00616:mRNA_6.1C_unshiu_006167217179153Disease resistance protein (CC-NBS-LRR class) family proteinAGI-0857.386
Cp1302 ------TP Ciclev10031853mscaffold_474078347414015
Gmom06 ------TP Ciclev10012088mscaffold_620675862073007
Lp0111 ------TP Ciclev10022339mscaffold_33609600936099799
Ov0410 ------TP Ciclev10001911mscaffold_54100505441009065
Tf0208 ------SI181TP Ciclev10012022mscaffold_62359351623595492J C_unshiu_00098:mRNA_56.1C_unshiu_00098370300372260COL1 protein
Vt0005 ------TP Ciclev10001888mscaffold_53644934636452178
Af1024 ------TP Ciclev10016735mscaffold_23584185935844177
Af1294 ------TP Ciclev10018252mscaffold_22777486327778271
Af1559 ------TP Ciclev10005333mscaffold_922118622215512
Al0256 ------TP Ciclev10028637mscaffold_81953813819541255
Bf0410 ------TP Ciclev10003680mscaffold_53291782632924241
Cp1308 AAvailable marker -O--OOTP Ciclev10011420mscaffold_663294216335005J C_unshiu_00147:mRNA_29.1C_unshiu_00147247701253232Unspecific monooxygenaseAGI-04101.201
Gmom07 ------TP Ciclev10021492mscaffold_372486277253007
Lp0112 AAvailable marker O-----TP Ciclev10032923mscaffold_437498093751724J C_unshiu_00236:mRNA_28.1C_unshiu_00236161422163318ATP synthase subunit d, mitochondrialAGI-0719.603RP-0750.962
Ov0411 ------TP Ciclev10011259mscaffold_62341063623414246
Tf0209 ------TP Ciclev10015591mscaffold_23564241235646764
Vt0006 ------TP Ciclev10010149mscaffold_12491488524923422
Af1025 ------TP Ciclev10019927mscaffold_34833710548339028
Af1295 ------TP Ciclev10030829mscaffold_434680833477274
Af1560 ------
Al0257Al0257.k ------TP Ciclev10008444mscaffold_12240741222409529
Bf0411 MDisagree by Marco analysis ------TP Ciclev10028317mscaffold_82186906521874083J C_unshiu_00500:mRNA_13.1C_unshiu_00500128482133656Sulfotransferase
Cp1323 ------TP Ciclev10012716mscaffold_61799256317993671
Gmom08 ------TP Ciclev10008617mscaffold_141439484146608
Lp0113 ------TP Ciclev10007510mscaffold_12448059124484723
Ov0412 OOthers ----OOSI050,SI222TP Ciclev10015053mscaffold_23103608831038222J C_unshiu_00143:mRNA_11.1C_unshiu_001436747569537SEC14 cytosolic factor family proteinAGI-0642.110KmG-0639.373JtR-06S15.372
Tf0210 ------SI183TP Ciclev10004533mscaffold_91199328211999324J C_unshiu_00926:mRNA_13.1C_unshiu_00926108384111875Zinc finger protein NUTCRACKERAGI-0856.724
Vt0007 ------TP Ciclev10019734mscaffold_34982190649825730
Af1026 O-----TP Ciclev10016450mscaffold_22469026124692734J C_unshiu_00136:mRNA_33.1C_unshiu_00136278221280719Period circadian protein, putative isoform 1RP-06.124.027
Af1296 ------TP Ciclev10031556mscaffold_41913359219137895
Af1561 ------TP Ciclev10009643mscaffold_124203242423040
Al0301 ------TP Ciclev10022576mscaffold_34590687945907641
Bf0412 ------NoAGI-0829.534
Cp1330 ------TP Ciclev10019667mscaffold_31489816814903449
Gmom09 ------TP Ciclev10008617mscaffold_141439484146608
Lp0114 ------TP Ciclev10008315mscaffold_12862362428626008
Ov0413 ------TP Ciclev10028322mscaffold_81780942817813065J C_unshiu_00225:mRNA_26.1C_unshiu_00225238952242235Cellular nucleic acid-binding protein likeKmG-0734.263
Tf0211 ------TP Ciclev10008192mscaffold_12860732528610917
Vt0008 ------TP Ciclev10019736mscaffold_34925639049259083
Af1027 O-----TP Ciclev10005293mscaffold_929463012950297
Af1297 ------TP Ciclev10013207mscaffold_62331186723313814
Af1562 ------TP Ciclev10022384mscaffold_3548048549062
Al0302 AAvailable marker -O--OOSI090,SI311TP Ciclev10004372mscaffold_92507369325080376J C_unshiu_00119:mRNA_33.1C_unshiu_00119346131352710Putative seed imbibition proteinAGI-0348.375KmG-03218.339JtR-033NAT-033.773RP-0336.113
Bf0413 ------J C_unshiu_00293:mRNA_16.1C_unshiu_00293231743233897Hypothetical proteinAGI-0986.996
Cp1334 MDisagree by Marco analysis ------J C_unshiu_01048:mRNA_12.1C_unshiu_010488738690179Phosphoribosylformylglycinamidine cyclo-ligaseAGI-0346.968
Gmom11 ------TP Ciclev10019184mscaffold_3680835684433
Lp0115 ------TP Ciclev10028775mscaffold_81780942817813065
Ov0414Ov0413.2 ------TP Ciclev10028322mscaffold_81780942817813065
Tf0212 ------SI196TP Ciclev10030538mscaffold_41981680019825304J C_unshiu_00535:mRNA_20.1C_unshiu_00535166525174142Putative nuclear matrix constituent protein 1-like proteinAGI-0756.586
Vt0009 ------TP Ciclev10012382mscaffold_62493248124935909J C_unshiu_00135:mRNA_6.1C_unshiu_001352589128913Major intrinsic protein (MIP) family transporterAGI-0438.770KmG-0414.707
Af1028 O-----TP Ciclev10000335mscaffold_54211362142120391
Af1298 ------TP Ciclev10005845mscaffold_920372732040825
Af1562b ------TP Ciclev10026749mscaffold_715307131532413
Al0303 ------TP Ciclev10029291mscaffold_82443106424433341
Bf0414 ------TP Ciclev10014446mscaffold_277195507723396
Cp1336 ------TP Ciclev10032697mscaffold_433359453338632
Gmom12 ------TP Ciclev10009761mscaffold_12560450925605857
Lp0116 Bno homozygous cultivar with minor allele ------TP Ciclev10028879mscaffold_81939729419398741J C_unshiu_02034:mRNA_3.1C_unshiu_0203475738901DUF3049 family proteinJtR-0818.207NAT-0547.659
Ov0415 ------TP Ciclev10007121mscaffold_923390772341173
Tf0213 OOthers O-----TP Ciclev10030571mscaffold_41883954618848948J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putativeAGI-0748.581
Vt0010 ------TP Ciclev10020141mscaffold_34856024548562027
Af1029 ------TP Ciclev10022553mscaffold_321103082113166
Af1299 ------TP Ciclev10017055mscaffold_22763816327639131
Af1564 ------TP Ciclev10015917mscaffold_22620663526210648
Al0304 MDisagree by Marco analysis ------SI259,SI293TP Ciclev10013536mscaffold_62261697922619271J C_unshiu_00038:mRNA_27.1C_unshiu_00038174815175255Nutrient reservoir, putativeAGI-0446.361KmG-0416.744NAT-04RP-0454.617
Bf0415 ------J C_unshiu_00643:mRNA_7.1C_unshiu_00643115076117637BEL1-like homeodomain protein 1AGI-0846.736
Cp1340 ------TP Ciclev10032342mscaffold_4125954131376
Gmom13 ------TP Ciclev10005787mscaffold_91322303413225922J C_unshiu_00620:mRNA_11.2C_unshiu_00620118042120892Ethylene-responsive transcription factor ERF114AGI-0856.724
Lp0117 ------TP Ciclev10002215mscaffold_52881531428816638
Ov0416 ------TP Ciclev10004279mscaffold_92480794824823388
Tf0214 ------SI020TP Ciclev10020053mscaffold_35013383750139049J C_unshiu_00014:mRNA_67.1C_unshiu_00014458017462942Transcription factor UNE10
Vt0011 AAvailable marker ----OOTP Ciclev10021162mscaffold_31298441112986574J C_unshiu_00337:mRNA_2.1C_unshiu_0033726846536Subtilase family proteinAGI-0541.306JtR-0537.780
Af1030 ------TP Ciclev10026876mscaffold_739307883932748
Af1300 ------TP Ciclev10008203mscaffold_185396478542949
Af1565 ------TP Ciclev10008210mscaffold_12187502221879839
Al0305 ------TP Ciclev10021551mscaffold_34720005547201893
Bf0416 ------TP Ciclev10020574mscaffold_32076297420770394
Cp1352 ------TP Ciclev10032297mscaffold_481987878204052
Gmom15 ------
Lp0118 MDisagree by Marco analysis ------J C_unshiu_00008:mRNA_8.1C_unshiu_000084636354318Protein trichome birefringence-like 33AGI-0273.759KmG-0275.522JtR-0224.745
Ov0417 ------TP Ciclev10007609mscaffold_1851900857695
Tf0215 ------TP Ciclev10001099mscaffold_54303692543044008
Vt0012 ------TP Ciclev10007708mscaffold_118061791809814
Af1031 O-----TP Ciclev10025711mscaffold_7718488722516J C_unshiu_00353:mRNA_22.1C_unshiu_003531511451546793-dehydroquinate synthase AroBAGI-0276.168
Af1301 ------TP Ciclev10025759mscaffold_7866845870030
Af1566 ------TP Ciclev10011855mscaffold_61534613515348332
Al0306 Bno homozygous cultivar with minor allele ------SI029TP Ciclev10021897mscaffold_373374057339222J C_unshiu_00199:mRNA_11.1C_unshiu_001997724079028ExpansinJtR-0523.944
Bf0417 ------TP Ciclev10009842mscaffold_1693215695933
Cp1361 AAvailable marker ----OOTP Ciclev10013042mscaffold_62171471621717652J C_unshiu_01167:mRNA_14.1C_unshiu_01167790368180850S ribosomal 5 alpha, chloroplasticAGI-0452.740
Gmom16 ------TP Ciclev10019228mscaffold_34747618847479361J C_unshiu_00023:mRNA_74.1C_unshiu_00023480170486801Protein LHYAGI-0573.007
Lp0119 AAvailable marker ----OOSI276TP Ciclev10028631mscaffold_82431572024317671J C_unshiu_00021:mRNA_65.1C_unshiu_00021426040431920Hypothetical proteinAGI-088.544
Ov0418 ------TP Ciclev10015900mscaffold_21186390611865549
Tf0216 ------TP Ciclev10002569mscaffold_52941314329414562
Vt0013 ------TP Ciclev10008981mscaffold_11312328013126173
Af1032 O-----TP Ciclev10009868mscaffold_183774898379348
Af1302 ------TP Ciclev10031454mscaffold_41445776614462726
Af1567 ------TP Ciclev10016663mscaffold_22275934122763218
Al0307Al0307.2 ------TP Ciclev10021897mscaffold_373374057339222
Bf0418 ------TP Ciclev10002049mscaffold_53848925738490776
Cp1362 ------TP Ciclev10011842mscaffold_62159842921600967
Gmom17 ------TP Ciclev10019228mscaffold_34747618847479361
Lp0120 O-----TP Ciclev10021535mscaffold_35039957150401808
Ov0419 AAvailable marker -----OTP Ciclev10011593mscaffold_61670917916712039J C_unshiu_00008:mRNA_31.2C_unshiu_00008178086180944Pyruvate decarboxylaseRP-0411.143
Tf0217 ------TP Ciclev10001508mscaffold_53491079434916593
Vt0014 ------TP Ciclev10029694mscaffold_82110297921105476
Af1033 O-----TP Ciclev10016063mscaffold_21045689910459385
Af1303 ------TP Ciclev10009361mscaffold_12281092922812161
Af1568 ------J C_unshiu_00591:mRNA_15.1C_unshiu_00591108974112318Putative elongation factor 2-likeAGI-0124.954
Al0308 ------SI045TP Ciclev10028262mscaffold_82452111624524868J C_unshiu_00021:mRNA_97.1C_unshiu_00021630527634212NAD(P)H dehydrogenase B2AGI-0556.788
Bf0419 ------TP Ciclev10012995mscaffold_686966948697639
Cp1366 AAvailable marker -----O
Gmom19 ------TP Ciclev10011554mscaffold_62145081121454133J C_unshiu_00037:mRNA_27.1C_unshiu_00037166873170276Protein CCA1AGI-0454.804
Lp0121 ------TP Ciclev10017090mscaffold_23482930034831997
Ov0420 MDisagree by Marco analysis ------TP Ciclev10019489mscaffold_32484038624845254J C_unshiu_00286:mRNA_25.1C_unshiu_00286176709181573Methylenetetrahydrofolate reductase (NAD(P)H)AGI-0541.306JtR-0541.208
Tf0218 ------TP Ciclev10014499mscaffold_23148981131497594
Vt0015 ------TP Ciclev10025952mscaffold_724414522443391J C_unshiu_00025:mRNA_49.1C_unshiu_00025381829383760HexosyltransferaseAGI-0270.082KmG-0267.054JtR-0221.082
Af1034 ------TP Ciclev10013228mscaffold_619501211950908
Af1304 ------TP Ciclev10019494mscaffold_322104852215202
Af1569 ------TP Ciclev10031754mscaffold_42319247223198396
Al0309 AAvailable marker O----OTP Ciclev10022019mscaffold_34490005944900865J C_unshiu_00069:mRNA_47.1C_unshiu_00069301188317479Hypothetical proteinKmG-05S73.967JtR-0538.749RP-0586.332
Bf1176 ------TP Ciclev10033000mscaffold_42431210824313141
Cp1369 ------TP Ciclev10031159mscaffold_42473705024741836
Gmom22 ------TP Ciclev10032304mscaffold_42404159324043549J C_unshiu_00001:mRNA_158.1C_unshiu_0000110377271039688NAC transcription factor NAM-B1AGI-0778.469KmG-072.659
Lp0122 MDisagree by Marco analysis O-----SI170TP Ciclev10026549mscaffold_713098841311067J C_unshiu_00218:mRNA_20.1C_unshiu_0021898317107740Heterogeneous nuclear ribonucleoprotein QNAT-02S69.942RP-02.217.330
Ov0421Ov0420.2 ------TP Ciclev10019489mscaffold_32484038624845254
Tf0219 Bno homozygous cultivar with minor allele O-----SI076,SI267TP Ciclev10005087mscaffold_92566204925666791J C_unshiu_00115:mRNA_31.1C_unshiu_00115248109252610Transcription factor bHLH60AGI-0349.250
Vt0016 ------TP Ciclev10011403mscaffold_61797482817979364
Af1035 O-----TP Ciclev10030982mscaffold_42346918423472872
Af1305 ------TP Ciclev10029439mscaffold_81976007719761961
Af1570 ------TP Ciclev10009899mscaffold_146015884603705
Al0310Al0309.2 ------TP Ciclev10022019mscaffold_34490005944900865
Bf1181 ------
Cp1405 ------TP Ciclev10021000mscaffold_320024272008126
Gmom23 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1KmG-0220.942
Lp0123 ------TP Ciclev10000541mscaffold_53288961432896199
Ov0422 AAvailable marker -----OTP Ciclev10016314mscaffold_21107158711074479J C_unshiu_00184:mRNA_33.1C_unshiu_0018429595329873614-3-3-like protein GF14 muRP-06.128.576
Tf0220 ------TP Ciclev10013334mscaffold_62365725623657810
Vt0017 ------TP Ciclev10031431mscaffold_42370552323709604
Af1036 O-----TP Ciclev10021080mscaffold_370168317019863J C_unshiu_00425:mRNA_11.1C_unshiu_004256559668473Replication factor C subunit 2AGI-0543.118
Af1306 ------TP Ciclev10014843mscaffold_22896866828973736
Af1571 ------TP Ciclev10010323mscaffold_12453306424536628
Al0311 ------TP Ciclev10020637mscaffold_354563365459361
Bf1182.2 ------NoAGI-0356.391
Cp1407 ------TP Ciclev10031886mscaffold_42124308521244983
Gmom24 ------TP Ciclev10025985mscaffold_71518295015186486J C_unshiu_01526:mRNA_4.1C_unshiu_015261798221291Ethylene-responsive transcription factor WRI1AGI-0219.971
Lp0124 ------TP Ciclev10015245mscaffold_21008752310092758
Ov0423 T3 or more alleleic model O-----TP Ciclev10023016mscaffold_34295436242955051J C_unshiu_00152:mRNA_28.1C_unshiu_00152189707190632Hypothetical proteinAGI-0555.522
Tf0221 ------SI057,SI225TP Ciclev10025996mscaffold_7490750492882J C_unshiu_00488:mRNA_7.1C_unshiu_004884481348259Ankyrin repeat domain-containing protein, chloroplasticAGI-0281.212
Vt0018 ------TP Ciclev10016206mscaffold_22247120822474774
Af1037 ------TP Ciclev10032461mscaffold_419695901972842J C_unshiu_00058:mRNA_65.1C_unshiu_00058521901525000Uroporphyrinogen decarboxylaseAGI-0450.972
Af1307 ------TP Ciclev10005707mscaffold_953105135314498
Af1572 ------TP Ciclev10027884mscaffold_82208423222091205
Al0312 ------TP Ciclev10021037mscaffold_341449394148359
Bf1185 ------TP Ciclev10003304mscaffold_54099352040993992NoAGI-09
Cp1412 ------TP Ciclev10021694mscaffold_34721742847221472
Gmom26 ------TP Ciclev10005911mscaffold_9713868716708J C_unshiu_00007:mRNA_76.1C_unshiu_00007473625476336Prefoldin subunit 3AGI-0310.918
Lp0125 ------TP Ciclev10004499mscaffold_91115075811155385
Ov0424 ------TP Ciclev10029115mscaffold_82348048323484398
Tf0222 ------TP Ciclev10008882mscaffold_12878216928786731
Vt0019 ------TP Ciclev10002927mscaffold_54191353641914321
Af1038 ------
Af1308 ------TP Ciclev10025747mscaffold_71362550413630800
Af1573 ------TP Ciclev10026597mscaffold_71116335911165487
Al0313 AAvailable marker O---OOTP Ciclev10011272mscaffold_62396603923969583J C_unshiu_00133:mRNA_4.2C_unshiu_001332248526003Putative phosphatidylinositol 4-kinase type 2-betaAGI-0438.152KmG-049.748
Bf1186 ------SI245TP Ciclev10012047mscaffold_62191243821917736J C_unshiu_00079:mRNA_40.1C_unshiu_00079278696283911R3H domain-containing protein 2
Cp1427 AAvailable marker ----OOTP Ciclev10021746mscaffold_34557686345579197J C_unshiu_00326:mRNA_5.1C_unshiu_003262307325265Bifunctional protein FolDAGI-0558.917
Gmom27 ------TP Ciclev10032012mscaffold_41604632216048971
Lp0126 AAvailable marker O---OOTP Ciclev10025164mscaffold_739468183949964J C_unshiu_00801:mRNA_10.1C_unshiu_0080197228100216Phototropic-responsive NPH3 family proteinAGI-0265.295KmG-0254.892JtR-0226.278RP-02.2
Ov0425 Bno homozygous cultivar with minor allele ------SI051,SI291,SI351,SI371TP Ciclev10015385mscaffold_240211674024377J C_unshiu_00992:mRNA_13.1C_unshiu_009927900882132DnaJAGI-0741.317RP-0725.534
Tf0223 ------TP Ciclev10028561mscaffold_82377430923780334
Vt0020 ------TP Ciclev10032461mscaffold_419701291972842
Af1039 ------TP Ciclev10031458mscaffold_41438114414384897
Af1309 ------TP Ciclev10021713mscaffold_35064775350652010
Af1574 ------TP Ciclev10011911mscaffold_61444465114447199
Al0314 ------TP Ciclev10009591mscaffold_125747692577568
Bf1192 ------TP Ciclev10008160mscaffold_11067865310684627J C_unshiu_00242:mRNA_11.1C_unshiu_00242100038105603Casein kinase I-like proteinAGI-0157.863
Cp1428 ------TP Ciclev10020642mscaffold_34919556949198341
Gmom28 ------TP Ciclev10032943mscaffold_41259611312597155
Lp0127 ------TP Ciclev10029357mscaffold_82137401921379609
Ov0426Ov0425.2 ------TP Ciclev10015385mscaffold_240211674024377
Tf0224 OOthers O-----TP Ciclev10011741mscaffold_677853287796808J C_unshiu_00104:mRNA_54.1C_unshiu_00104400959412354Zinc finger CCCH domain-containing protein 32AGI-0499.859
Vt0021 ------TP Ciclev10007296mscaffold_120158942023323
Af1040 ------TP Ciclev10019364mscaffold_32935185429354190
Af1310 ------TP Ciclev10016380mscaffold_21448140214484929
Af1575 ------TP Ciclev10029551mscaffold_81752483517526697J C_unshiu_02252:mRNA_4.1C_unshiu_0225279979032Photosystem II reaction center W proteinAGI-0856.724
Al0315 ------TP Ciclev10028656mscaffold_849053414909930
Bf1198 ------
Cp1436 ------TP Ciclev10021696mscaffold_34872083748722931
Gmom29 ------TP Ciclev10000654mscaffold_51267741412680761J C_unshiu_00578:mRNA_7.1C_unshiu_005787744680730Putative WRKY transcription factor 33AGI-0222.436
Lp0128 ------TP Ciclev10027734mscaffold_828488842853210
Ov0427 ------TP Ciclev10009427mscaffold_121566792158871J C_unshiu_00553:mRNA_14.1C_unshiu_00553110847134434Hypothetical proteinKmG-05S36.268
Tf0225 ------TP Ciclev10015893mscaffold_23621196136216858
Vt0022 ------TP Ciclev10006852mscaffold_92420119624203794
Af1041 ------TP Ciclev10002311mscaffold_54030030640304768
Af1311 ------TP Ciclev10009720mscaffold_120256982028188
Af1576 ------TP Ciclev10018636mscaffold_34156633841572373NoAGI-0547.986
Al0316 O-----TP Ciclev10021599mscaffold_34091814840922656
Bf1204 ------SI364TP Ciclev10013297mscaffold_61375067113752605J C_unshiu_00155:mRNA_3.1C_unshiu_001551760819347Hypothetical protein
Cp1439 ------TP Ciclev10019587mscaffold_34713975647144124
Gmom31 ------TP Ciclev10008052mscaffold_12778341927789937
Lp0129 ------TP Ciclev10011622mscaffold_62534941725351949
Ov0428Ov0427.2 ------TP Ciclev10009427mscaffold_121566792158871
Tf0226 AAvailable marker O----OTP Ciclev10008836mscaffold_1526813529150J C_unshiu_00129:mRNA_32.1C_unshiu_00129303106311407Exocyst subunit EXO70 family proteinRP-011.100
Vt0023 ------TP Ciclev10016079mscaffold_287122368714558
Af1042 O-----TP Ciclev10017429mscaffold_22878644428788097NoAGI-0655.700
Af1312 ------TP Ciclev10014367mscaffold_22902243329030537J C_unshiu_00022:mRNA_44.1C_unshiu_00022308324316293Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1AGI-0637.883
Af1577 ------TP Ciclev10021651mscaffold_366029946605239
Al0317 ------TP Ciclev10021392mscaffold_330062183008357J C_unshiu_00092:mRNA_60.1C_unshiu_00092425854427887CASP-like protein 4A2KmG-05S16.871JtR-059.525
Bf1207 ------TP Ciclev10010835mscaffold_12291269522913798J C_unshiu_00103:mRNA_59.1C_unshiu_00103319187320041Hypothetical proteinAGI-01
Cp1441 ------TP Ciclev10000384mscaffold_53773587337744747
Gn0001 ------TP Ciclev10012905mscaffold_61284040812842940
Lp0130 ------TP Ciclev10008029mscaffold_11151241511514434
Ov0429Ov0429.k ------TP Ciclev10015338mscaffold_2290799294122
Tf0227 AAvailable marker O---OOTP Ciclev10031750mscaffold_42166606121671693J C_unshiu_00010:mRNA_30.1C_unshiu_00010183508188843Trihelix transcription factor GT-1AGI-0835.927
Vt0024 ------TP Ciclev10005069mscaffold_92159347321597037
Af1043 ------TP Ciclev10026060mscaffold_72004993620052008J C_unshiu_00519:mRNA_19.1C_unshiu_00519110187111261Ribonucleoside-diphosphate reductase subunit M2AGI-0244.231
Af1313 ------TP Ciclev10014748mscaffold_23122229931225439
Af1578 ------TP Ciclev10023834mscaffold_34801606948017656
Al0318Al0318.2 AAvailable marker -----OTP Ciclev10021392mscaffold_330062183008357
Bf1208 ------SI108No
Cp1474 ------TP Ciclev10001462mscaffold_53751704337521275
Gn0002 ------TP Ciclev10032697mscaffold_433359453338632J C_unshiu_00465:mRNA_12.1C_unshiu_00465149021153095Hypothetical proteinAGI-0790.233JtR-0764.361
Lp0131 ------TP Ciclev10006247mscaffold_92039051720391131
Ov0501 ------TP Ciclev10019938mscaffold_34808947348091232J C_unshiu_00026:mRNA_86.1C_unshiu_00026712172713868Nepenthesin IIRP-0561.026
Tf0228 ------TP Ciclev10027952mscaffold_860258026031497
Vt0025 ------TP Ciclev10025308mscaffold_767646646770188
Af1044 ------TP Ciclev10013662mscaffold_61637885816383103
Af1314 ------TP Ciclev10001751mscaffold_53828341938284959
Af1579 ------TP Ciclev10006023mscaffold_97534878181
Al0319 Bno homozygous cultivar with minor allele O-----TP Ciclev10022720mscaffold_34344794243449920J C_unshiu_00411:mRNA_15.1C_unshiu_00411140821145311Actin-depolymerizing factor 2AGI-0346.274KmG-05S65.273JtR-0542.339RP-0572.912
Bf1243 ------TP Ciclev10032276mscaffold_42465701524660141J C_unshiu_00001:mRNA_262.1C_unshiu_0000116636301666687U3 small nucleolar ribonucleoprotein IMP4AGI-0784.114
Cp1477 ------TP Ciclev10001770mscaffold_53609584436099890J C_unshiu_01173:mRNA_9.1C_unshiu_011736297766775Thylakoid lumenal 29 kDa protein, chloroplasticAGI-0954.123
Gn0003 ------TP Ciclev10025931mscaffold_712071411210820
Lp0132 ------TP Ciclev10014204mscaffold_254690505475142
Ov0502 ------J C_unshiu_01254:mRNA_7.1C_unshiu_012546434965139Hypothetical proteinKmG-0462.093JtR-043.789RP-09
Tf0229 ------TP Ciclev10028910mscaffold_82424876724251495
Vt0026 ------TP Ciclev10024169mscaffold_34469139544694360
Af1045 ------TP Ciclev10000659mscaffold_591977749204364
Af1315 ------TP Ciclev10025598mscaffold_7203839207450
Af1580 ------TP Ciclev10016368mscaffold_23501384835015439J C_unshiu_00048:mRNA_76.1C_unshiu_00048512885514767NAD(P)-binding Rossmann-fold superfamily protein isoform 2AGI-0620.932
Al0320 ------TP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Bf1253 ------
Cp1483 ------TP Ciclev10020574mscaffold_32076297420770394J C_unshiu_00692:mRNA_14.1C_unshiu_00692122321129331Abhydrolase domain-containing protein 11AGI-0541.162
Gn0004 ------TP Ciclev10026028mscaffold_760115236014015J C_unshiu_00696:mRNA_14.1C_unshiu_00696122646125456Flavonol synthaseAGI-0249.699KmG-0238.471JtR-0215.126
Lp0133 AtAvailable marker O---OOTP Ciclev10021187mscaffold_33965761339660222J C_unshiu_00037:mRNA_84.1C_unshiu_00037603033605555Class I chitinaseAGI-0548.590KmG-05S60.040NAT-0526.483RP-0565.128
Ov0503 AtAvailable marker O----OTP Ciclev10020582mscaffold_32838221828386683J C_unshiu_00585:mRNA_5.1C_unshiu_00585316363482460S ribosomal protein L5NAT-0519.042
Tf0230 ------SI140TP Ciclev10008206mscaffold_12346384323470911J C_unshiu_00338:mRNA_22.1C_unshiu_00338163174169978NAD-dependent protein deacetylase SRT1
Vt0027 ------TP Ciclev10031408mscaffold_4303399306794
Af1046 ------TP Ciclev10000873mscaffold_53999223439996269
Af1316 ------TP Ciclev10006289mscaffold_9685220687072
Af1581 ------TP Ciclev10024663mscaffold_32709241427093612
Al0320.2Al0320.em AAvailable marker -----OTP Ciclev10020878mscaffold_3541575543121J C_unshiu_01206:mRNA_1.1C_unshiu_0120643465819Phosphoenolpyruvate carboxylase family proteinJtR-0523.890
Cp0001 O-----TP Ciclev10021700mscaffold_34757641547578036
Cp1487 ------TP Ciclev10020878mscaffold_3541575543121
Gn0005 MDisagree by Marco analysis ------TP Ciclev10015934mscaffold_23569324935696515J C_unshiu_00337:mRNA_13.1C_unshiu_003376888371725FibrillinAGI-0616.857KmG-0663.840NAT-06S59.976
Lp0134 ------TP Ciclev10007510mscaffold_12448059124484723
Ov0504Ov0503.2 ------TP Ciclev10020582mscaffold_32838221828386683
Tf0231 ------TP Ciclev10026262mscaffold_767603116763833
Vt0028 ------TP Ciclev10032489mscaffold_41894749818950949J C_unshiu_00039:mRNA_34.1C_unshiu_00039255025269908Hypothetical proteinAGI-0751.998KmG-0744.183JtR-0739.088
Af1047 ------TP Ciclev10019002mscaffold_31635722716363309J C_unshiu_01252:mRNA_3.1C_unshiu_012526066966705NADH dehydrogenase subunit 11AGI-0541.306
Af1317 ------TP Ciclev10022803mscaffold_33593219835935023
Af1583 ------TP Ciclev10006246mscaffold_92954972229551403
Al0321.2 MDisagree by Marco analysis ------TP Ciclev10020878mscaffold_3541575543121
Cp0002 O-----TP Ciclev10020254mscaffold_34758333747586652
Cp1488Cp1488.1 ------TP Ciclev10021651mscaffold_366029946605239
Gn0005.2 ------TP Ciclev10015934mscaffold_23569324935696515
Lp0135 ------TP Ciclev10002870mscaffold_53941281939414334J C_unshiu_00457:mRNA_3.1C_unshiu_004572752128982Xylem serinease 1-like proteinJtR-0541.854
Ov0505 AAvailable marker -----OTP Ciclev10031252mscaffold_41662633816629094J C_unshiu_00250:mRNA_14.1C_unshiu_002508257384397Tyrosine decarboxylaseKmG-0753.887JtR-0748.672NAT-073.814
Tf0232 ------SI258,SI261TP Ciclev10001105mscaffold_53706620837070717J C_unshiu_00773:mRNA_3.1C_unshiu_007733135135269Histone-lysine N-methyltransferase ASHR1
Vt0029 ------TP Ciclev10031975mscaffold_424513452454325J C_unshiu_00979:mRNA_17.1C_unshiu_009797901681937GroES-like zinc-binding alcohol dehydrogenase family proteinAGI-0713.238
Af1048 ------TP Ciclev10019002mscaffold_31635722716363309
Af1318 ------TP Ciclev10016868mscaffold_21254954312550712
Af1584 ------TP Ciclev10026332mscaffold_71742421817426071
Al0322 ------TP Ciclev10002194mscaffold_53480135234804440
Cp0003 ------TP Ciclev10012377mscaffold_61182647211830875
Cp1488.2 ------TP Ciclev10021651mscaffold_366029946605239
Gn0006 ------
Lp0136 ------TP Ciclev10014127mscaffold_21050087910504450
Ov0506Ov0505.2 ------TP Ciclev10031252mscaffold_41662633816629094
Tf0233 ------TP Ciclev10008804mscaffold_167722646775904
Vt0030Vt0030.k O-----TP Ciclev10024917mscaffold_71127170511277014J C_unshiu_01240:mRNA_4.1C_unshiu_012402765532960Phospholipase DAGI-0212.615
Af1050 ------TP Ciclev10002662mscaffold_54287956342882316
Af1320 ------TP Ciclev10018023mscaffold_23460247934604518
Af1585 ------TP Ciclev10026687mscaffold_734623533463444
Al0323 OOthers ------TP Ciclev10012875mscaffold_61818813918189060
Cp0004 O-----TP Ciclev10020892mscaffold_34875330748755805
Cp1489 ------TP Ciclev10021127mscaffold_365773606582553
Gn0007.2 ------TP Ciclev10007114mscaffold_91777857117785482
Lp0137 ------TP Ciclev10021187mscaffold_33965761339660222
Ov0507 AAvailable marker -----OTP Ciclev10031860mscaffold_4642157644823
Tf0234 ------TP Ciclev10005012mscaffold_92347666123480861
Vt0031 ------
Af1051 O-----TP Ciclev10000105mscaffold_53509313235106001
Af1321 ------TP Ciclev10009751mscaffold_11637116816375666J C_unshiu_00108:mRNA_25.1C_unshiu_00108320409344557Hypothetical proteinAGI-0634.500
Af1586 ------TP Ciclev10005733mscaffold_92311950223122347J C_unshiu_00148:mRNA_17.1C_unshiu_00148145165147922Glycoprotein family proteinAGI-0363.545
Al0324 MDisagree by Marco analysis ------TP Ciclev10029315mscaffold_82042428720425903J C_unshiu_00320:mRNA_1.2C_unshiu_003201275814314Hypothetical proteinAGI-0841.127NAT-08231.019RP-0817.081
Cp0006 O-----TP Ciclev10031874mscaffold_41461089714614381
Cp1490 ------TP Ciclev10021970mscaffold_363693986372018
Gn0008 OOthers ------SI176TP Ciclev10005632mscaffold_91778963417793258J C_unshiu_00098:mRNA_1.1C_unshiu_00098512017442Phytoene desaturaseAGI-0346.274
Lp0138 ------TP Ciclev10008908mscaffold_125999572603377
Ov0508Ov0507.2 ------SI322TP Ciclev10031860mscaffold_4642157644823J C_unshiu_00202:mRNA_16.4C_unshiu_00202127322129988Ribulose bisphosphate carboxylase/oxygenase activase, chloroplasticAGI-078.291JtR-0776.060
Tf0235 MDisagree by Marco analysis O--O--TP Ciclev10030472mscaffold_41705765817074755J C_unshiu_00225:mRNA_13.1C_unshiu_002257570696678TATA-binding protein-associated factor 172AGI-0743.879
Vt0032 O-----SI024TP Ciclev10024737mscaffold_71790148717905433J C_unshiu_00382:mRNA_15.1C_unshiu_00382163577167662Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1AGI-0225.601RP-026.081
Af1052 O-----TP Ciclev10004444mscaffold_91280815412820311J C_unshiu_00508:mRNA_9.1C_unshiu_005084038558179Hypothetical proteinAGI-0856.724
Af1322 ------TP Ciclev10003088mscaffold_54171556241717774
Af1587 ------TP Ciclev10022920mscaffold_33948338739486219
Al0325 ------
Cp0007 ULess informative for main cultivars O-----TP Ciclev10022090mscaffold_34692469246927004
Cp1500 ------TP Ciclev10004776mscaffold_970802497086989J C_unshiu_00161:mRNA_19.1C_unshiu_001611505191572063-isopropylmalate dehydratase large subunitAGI-0346.274
Gn0009 AAvailable marker ----OOAGI-0457.369KmG-0427.843
Lp0139 ------TP Ciclev10021991mscaffold_314701631473304
Ov0509 ULess informative for main cultivars O-----NoAGI-09102.280RP-0921.445
Tf0236 ------TP Ciclev10000034mscaffold_53859515838602400
Vt0033 ------TP Ciclev10016829mscaffold_22369588123697100
Af1053 O-----TP Ciclev10014664mscaffold_22920681829208977
Af1324 ------TP Ciclev10002404mscaffold_53818966938190638
Af1588 ------TP Ciclev10028841mscaffold_867505036754741
Al0326 AAvailable marker ---OO-SI065,SI344TP Ciclev10022558mscaffold_364093116411254J C_unshiu_00443:mRNA_7.1C_unshiu_004436253264193Zinc finger A20 and AN1 domain-containing stress-associated protein 8AGI-0542.609KmG-05S32.841JtR-0516.025RP-0527.235
Cp0009 O-----TP Ciclev10018574mscaffold_34614324146147293
Cp1501 ------TP Ciclev10017197mscaffold_22433680924337802
Gn0010 ------
Lp0140 MDisagree by Marco analysis O-----TP Ciclev10016399mscaffold_23262990832634194J C_unshiu_00070:mRNA_52.1C_unshiu_00070393864397918Universal stress protein A-like proteinKmG-0212.229JtR-022.765RP-028.172
Ov0510 MDisagree by Marco analysis ------TP Ciclev10011175mscaffold_61001656410019369J C_unshiu_00279:mRNA_11.1C_unshiu_00279116848119657Phenylalanine ammonia-lyase 1KmG-0462.284JtR-043.789
Tf0237 ------TP Ciclev10004502mscaffold_92939288529395387
Vt0034 ------TP Ciclev10000597mscaffold_53963011139635609
Af1054 ------TP Ciclev10005132mscaffold_920333312036879
Af1325 ------TP Ciclev10026096mscaffold_762874606289468
Af1589 ------TP Ciclev10005524mscaffold_93099512930999295J C_unshiu_00003:mRNA_80.1C_unshiu_00003574672576940Peroxisomal 2,4-dienoyl-CoA reductaseAGI-0377.744
Al0327Al0326.2 ------TP Ciclev10022558mscaffold_364093116411254
Cp0010 O-----TP Ciclev10020155mscaffold_34560480645609651
Cp1523 AAvailable marker ----OOTP Ciclev10005519mscaffold_913567581359310J C_unshiu_01431:mRNA_7.1C_unshiu_014313151837086Hypothetical proteinAGI-0312.606
Gn0011 ------TP Ciclev10007488mscaffold_12481453924819264J C_unshiu_00341:mRNA_12.1C_unshiu_003418518289905Sucrose synthaseKmG-0121.459
Lp0141 ------TP Ciclev10016648mscaffold_22238672722388706
Ov0511 ------TP Ciclev10032764mscaffold_461014826103243
Tf0238 ------SI114TP Ciclev10026387mscaffold_7551893553909J C_unshiu_01559:mRNA_5.1C_unshiu_015592403534006Receptor-like protein kinase THESEUS 1
Vt0035 ------TP Ciclev10016383mscaffold_285107128514409
Af1055 ------TP Ciclev10001625mscaffold_54229797942300281
Af1326 ------TP Ciclev10021439mscaffold_34325833943260615
Af1590 ------TP Ciclev10017502mscaffold_293482929351074
Al0328 ------TP Ciclev10006155mscaffold_92995200529956306
Cp0012 O-----TP Ciclev10022248mscaffold_34444284144444278
Cp1529 ------TP Ciclev10021432mscaffold_348409474846859
Gn0012 ------TP Ciclev10018889mscaffold_34601123846017249J C_unshiu_00139:mRNA_16.1C_unshiu_00139135708141900Sucrose synthaseKmG-05S78.527
Lp0142 ------TP Ciclev10032977mscaffold_429768732978308
Ov0512 OOthers O-----TP Ciclev10006241mscaffold_92719850827199642J C_unshiu_00433:mRNA_19.1C_unshiu_00433116730118286Small heat shock proteinAGI-0340.361KmG-03225.743JtR-031NAT-03
Tf0240 ------SI184TP Ciclev10018505mscaffold_34271899142733040J C_unshiu_00386:mRNA_19.1C_unshiu_00386164396178993Myosin 2
Wy0001 ------TP Ciclev10004473mscaffold_935648773568051
Af1056 ------TP Ciclev10015905mscaffold_22659597226598955J C_unshiu_00262:mRNA_14.1C_unshiu_002628457387520Purple acid phosphatase 3AGI-0666.320
Af1327 ------TP Ciclev10006293mscaffold_92949859529499368
Af1591 ------TP Ciclev10030412mscaffold_82367483323676979
Al0329 AAvailable marker O---OOSI185TP Ciclev10025866mscaffold_71720123617204282J C_unshiu_00421:mRNA_21.2C_unshiu_00421196945199790ActinAGI-0225.162KmG-0211.218JtR-027.174NAT-02S5.552RP-028.191
Cp0013 ------TP Ciclev10023436mscaffold_34483403544836704
Cp1533 ------TP Ciclev10021868mscaffold_348317514834270J C_unshiu_00768:mRNA_14.1C_unshiu_00768110682113065Lil3 proteinAGI-0529.039
Gn0014.2 Bno homozygous cultivar with minor allele O-----TP Ciclev10005481mscaffold_92948865829491181J C_unshiu_00056:mRNA_20.1C_unshiu_00056144107146527Beta-carotene hydroxylase 1
Lp0143 Bno homozygous cultivar with minor allele ------TP Ciclev10019139mscaffold_360769496080875J C_unshiu_00159:mRNA_40.1C_unshiu_00159339926343475Translation elongation factor GAGI-0545.297JtR-0518.056
Ov0513 OOthers O-----TP Ciclev10011622mscaffold_62534941725351949J C_unshiu_00009:mRNA_59.1C_unshiu_00009325807333424Hypothetical proteinAGI-0438.903KmG-045.110RP-0460.491
Tf0241 Bno homozygous cultivar with minor allele O-----TP Ciclev10027798mscaffold_82210687222114471J C_unshiu_00481:mRNA_18.1C_unshiu_00481121975128680Zinc finger CCCH domain-containing protein 24AGI-0827.618
Wy0002 ------TP Ciclev10022129mscaffold_31847296718473951
Af1057 ------TP Ciclev10000654mscaffold_51267741412680761
Af1328 ------TP Ciclev10022653mscaffold_33983468039837971
Af1592 ------TP Ciclev10021425mscaffold_33759762437600961
Al0330 ------TP Ciclev10009377mscaffold_174554927457451
Cp0015 ------TP Ciclev10016927mscaffold_21739038917391229
Cp1556 Bno homozygous cultivar with minor allele ------TP Ciclev10018756mscaffold_32143249421440948J C_unshiu_00175:mRNA_9.1C_unshiu_001759133899600Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplasticAGI-0540.337
Gn0016 ------KmG-0118.088
Lp0144 ------TP Ciclev10027174mscaffold_794521149461436
Ov0514 ------TP Ciclev10004975mscaffold_974363557440439
Tf0242 ------TP Ciclev10002528mscaffold_53392198433926087
Wy0003 AAvailable marker O---OOTP Ciclev10001202mscaffold_53718965337192231J C_unshiu_00144:mRNA_30.1C_unshiu_00144215223217733AminotransferaseAGI-0946.823KmG-0952.581NAT-0969.467
Af1058 ------TP Ciclev10018655mscaffold_32300102623009675
Af1329 ------
Af1593 ------TP Ciclev10015971mscaffold_22773839727741912J C_unshiu_00745:mRNA_8.1C_unshiu_007458226585742Prolactin regulatory element-binding protein, putativeAGI-0661.501
Al0331 AAvailable marker -----OTP Ciclev10033190mscaffold_484066328407188J C_unshiu_00111:mRNA_9.1C_unshiu_001118353184087Hypothetical proteinKmG-099.593JtR-0752.611RP-0719.079
Cp0016 ------TP Ciclev10008520mscaffold_11811726418119451
Cp1567 ------TP Ciclev10014857mscaffold_23114884931150616
Gn0017 ------TP Ciclev10007311mscaffold_12588082425887976J C_unshiu_00005:mRNA_103.1C_unshiu_00005841899847089Sucrose phosphate synthaseAGI-0130.293KmG-0117.862
Lp0145 ------J C_unshiu_01491:mRNA_8.1C_unshiu_014914712250568Class I glutamine amidotransferase superfamily proteinKmG-05S40.802JtR-05
Ov0515 ------TP Ciclev10020337mscaffold_31487842714882285J C_unshiu_01955:mRNA_4.1C_unshiu_019552197026584DUF760 family proteinKmG-0140.558
Tf0243 ------SI231TP Ciclev10032893mscaffold_436366673641089J C_unshiu_00236:mRNA_46.1C_unshiu_00236271647281392Nuclear transcription factor Y subunit B-8
Wy0004 ------J C_unshiu_02819:mRNA_2.1C_unshiu_0281927284118CXE carboxylesteraseAGI-0870.463NAT-08265.434
Af1059 ------TP Ciclev10011827mscaffold_62306638423072168J C_unshiu_00038:mRNA_98.1C_unshiu_00038554982560549Plastidic glucose transporter 4AGI-0444.840
Af1330 ------TP Ciclev10032948mscaffold_41992708419929921
Af1594 ------TP Ciclev10018838mscaffold_344011594407506
Al0332 ------TP Ciclev10032086mscaffold_41489572814896991
Cp0018 ------TP Ciclev10005068mscaffold_956054705610840J C_unshiu_00057:mRNA_49.1C_unshiu_00057415460428173Putative E3 ubiquitin-protein ligase HERC1AGI-0344.848
Cp1572 ------TP Ciclev10014734mscaffold_23319888033205481
Gn0018 ------TP Ciclev10030969mscaffold_450535405061039J C_unshiu_00616:mRNA_15.1C_unshiu_0061699349106841V-type H+-transporting ATPase subunit AAGI-0884.345KmG-0216.986
Lp0201 ------TP Ciclev10028459mscaffold_82336548123369843
Ov0516 ------TP Ciclev10020524mscaffold_33533219135335063
Tf0244 ------TP Ciclev10001847mscaffold_53567441635675935
Wy0005 DDominant marker O-----TP Ciclev10019927mscaffold_34833710548339028NoAGI-0583.570KmG-05S122.932
Af1060 O-----TP Ciclev10000400mscaffold_54291837142923480J C_unshiu_00370:mRNA_16.1C_unshiu_003707528379772Tonoplast monosaccharide transporter 2AGI-0923.647
Af1331 ------TP Ciclev10002737mscaffold_54138640941389807
Af1595 ------TP Ciclev10022641mscaffold_390401819045543
Al0333 ------TP Ciclev10004130mscaffold_939545073961401
Cp0021 O-----TP Ciclev10015229mscaffold_22230529722307562
Cp1577 ------TP Ciclev10015546mscaffold_23573248635736448
Gn0019 ------TP Ciclev10002883mscaffold_52694995126952841J C_unshiu_02041:mRNA_4.1C_unshiu_020411800320672Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1KmG-0917.972JtR-09S22.316
Lp0202 O-----TP Ciclev10006509mscaffold_931310063134438J C_unshiu_00051:mRNA_31.2C_unshiu_00051239802243699NEDD8-activating enzyme E1 catalytic subunitAGI-0323.085
Ov0517 ------
Tf0245 ------SI021TP Ciclev10008628mscaffold_11829859918300295J C_unshiu_00548:mRNA_21.1C_unshiu_00548168151169460Hypothetical protein
Wy0006 O-----TP Ciclev10021901mscaffold_349035924905871J C_unshiu_00628:mRNA_6.1C_unshiu_006283841940239Bax inhibitor 1KmG-05S19.072JtR-0519.698NAT-0521.803
Af1061 O-----TP Ciclev10024969mscaffold_760804106084393
Af1332 ------TP Ciclev10013051mscaffold_62083442720836151J C_unshiu_00052:mRNA_57.1C_unshiu_0005245595945768460S acidic ribosomal proteinAGI-04
Af1596 ------TP Ciclev10002542mscaffold_53796498937967950
Al0334 ------TP Ciclev10008488mscaffold_11811394918117209
Cp0026 ------TP Ciclev10014741mscaffold_22493868624943643J C_unshiu_00472:mRNA_8.1C_unshiu_004728527889618Putative ADP-glucose pyrophosphorylase small subunitAGI-0672.449
Cp1584 AAvailable marker -----OTP Ciclev10031523mscaffold_4201556204527J C_unshiu_00168:mRNA_36.1C_unshiu_00168285304287905Cell division cycle 20.1, cofactor of APC complex
Gn0021 AAvailable marker ----OOTP Ciclev10000597mscaffold_53963011139635609J C_unshiu_01033:mRNA_10.1C_unshiu_010334779953166Somatic embryogenesis receptor kinase 1AGI-0942.621KmG-0968.220JtR-09S97.453NAT-0983.381
Lp0203 ------TP Ciclev10015577mscaffold_22716728927171203
Ov0518 ------TP Ciclev10009133mscaffold_11718503217187893
Tf0246 ------TP Ciclev10029834mscaffold_857189135719431
Wy0007 ------TP Ciclev10025280mscaffold_71545694815460803
Af1062 ------TP Ciclev10012766mscaffold_61489293914897320J C_unshiu_00102:mRNA_47.1C_unshiu_00102331172333886PRA1 family protein A1AGI-0893.624
Af1333 ------TP Ciclev10012166mscaffold_61428119714286862
Af1597 ------TP Ciclev10016480mscaffold_21348200513485923
Al0335 ------TP Ciclev10021844mscaffold_361312146135849
Cp0026bCp0026.2 O-----TP Ciclev10024128mscaffold_34335440443355588
Cp1585 MDisagree by Marco analysis ------TP Ciclev10021651mscaffold_366029946605239J C_unshiu_00412:mRNA_10.1C_unshiu_004128030082171Stay green protein
Gn0027 HDisagree on Clementine haploid genotype ------AGI-0543.412
Lp0204 ------TP Ciclev10008687mscaffold_12452340024526186
Ov0519 ------
Tf0247 ------TP Ciclev10009354mscaffold_12055079220553673
Wy0008 HDisagree on Clementine haploid genotype O-----TP Ciclev10009193mscaffold_192973609299641NoAGI-0157.863KmG-0143.003JtR-01S99.300
Af1064 ------TP Ciclev10004309mscaffold_93051333330517676
Af1335 ------TP Ciclev10016822mscaffold_22754966027551146
Af1600 ------TP Ciclev10013134mscaffold_62275802722760875J C_unshiu_00038:mRNA_51.4C_unshiu_00038305110307864Negatively light-regulated proteinAGI-045.122
Al0336 ------TP Ciclev10001109mscaffold_53591738435925361
Cp0028 O-----TP Ciclev10014471mscaffold_21141833111422116
Cp1586 ------TP Ciclev10019696mscaffold_318811561887598
Gn0028 DDominant marker ------JtR-01S10.669
Lp0205 ------TP Ciclev10008932mscaffold_145416764543982
Ov0520 OOthers O-----TP Ciclev10029053mscaffold_847123934713689J C_unshiu_00438:mRNA_3.1C_unshiu_004383434335619BURP domain-containing proteinAGI-0833.144JtR-0826.748
Tf0248 ------TP Ciclev10030929mscaffold_41521652715221460
Wy0009 ------TP Ciclev10022580mscaffold_34862190948624858
Af1065 ------TP Ciclev10009538mscaffold_11100875911012720
Af1336 ------TP Ciclev10012322mscaffold_686214398630049
Af1601 ------TP Ciclev10026686mscaffold_742144234217517
Al0337 ------TP Ciclev10025556mscaffold_764374066440864
Cp0030 O-----TP Ciclev10019700mscaffold_34381564743818118J C_unshiu_00869:mRNA_1.1C_unshiu_008691761664Phospholipase A1-Igamma1, chloroplasticAGI-0553.642
Cp1592 ------TP Ciclev10002032mscaffold_54160958441613450
Gn0029 AAvailable marker -----O
Lp0206 O-----TP Ciclev10011764mscaffold_62083650920840107J C_unshiu_00052:mRNA_56.1C_unshiu_00052452105455631Monodehydroascorbate reductaseAGI-0458.655
Ov0521 ------TP Ciclev10003767mscaffold_51516804715173092
Tf0249 ------TP Ciclev10023300mscaffold_34579387745798206
Wy0010 ------TP Ciclev10019848mscaffold_394660719468445
Af1066 ------TP Ciclev10024951mscaffold_738870103890047
Af1337 ------TP Ciclev10024178mscaffold_32341957423420180
Af1602 ------TP Ciclev10017370mscaffold_21335008213351899
Al0401 OOthers O-----TP Ciclev10025346mscaffold_71318056713191638J C_unshiu_01698:mRNA_6.1C_unshiu_016983933640206Hypothetical proteinKmG-0226.204JtR-02-6.043NAT-02S22.960
Cp0033 O-----TP Ciclev10031724mscaffold_42355654023559896
Cp1596 ------TP Ciclev10000953mscaffold_53575716235762784
Gn0030 MDisagree by Marco analysis ------AGI-0837.823KmG-0837.758NAT-08230.069
Lp0207 O-----TP Ciclev10021695mscaffold_361403326142252J C_unshiu_01103:mRNA_8.1C_unshiu_011036753169104Protein ODORANT1AGI-0545.374RP-0525.010
Ov0522 ------TP Ciclev10026806mscaffold_72005647520058190
Tf0250 AAvailable marker O---OOTP Ciclev10028849mscaffold_826977932701440J C_unshiu_00152:mRNA_36.1C_unshiu_00152252884256413DNA-directed RNA polymerase II subunit RPB3-AAGI-0873.105
Wy0011 OOthers O-----SI091TP Ciclev10032364mscaffold_42441760224419019J C_unshiu_00001:mRNA_226.1C_unshiu_0000114299431431279Enoyl CoA hydratase/isomeraseAGI-0786.288
Af1067 O-----
Af1338 ------TP Ciclev10004154mscaffold_92466609224671850
Af1603 ------TP Ciclev10022774mscaffold_34297494742976794
Al0402 AAvailable marker O---OOJ C_unshiu_00008:mRNA_88.1C_unshiu_00008564906567158Peptide upstream ORF protein, putativeAGI-0881.190KmG-0444.163NAT-0428.388
Cp0039 O-----TP Ciclev10032929mscaffold_415496791551396J C_unshiu_00012:mRNA_98.1C_unshiu_00012722822724539LOB domain-containing protein 12AGI-0711.882
Cp1598 AAvailable marker ----OOTP Ciclev10021001mscaffold_338023873805494J C_unshiu_00849:mRNA_13.2C_unshiu_00849729357582431 kDa ribonucleoproteinAGI-0512.715
Gn0031 AtAvailable marker ----OOAGI-0837.706
Lp0208 ------TP Ciclev10018482mscaffold_34570436145713084J C_unshiu_00326:mRNA_24.1C_unshiu_00326146528154002ABC transporter C family member 3AGI-0315.136NAT-0328.397
Ov0523 ------TP Ciclev10011639mscaffold_61776261417767198
Tf0251 ------SI005J C_unshiu_00039:mRNA_19.1C_unshiu_00039154778176393Enhancer OF AG-4-like protein, putative
Wy0012 O----OTP Ciclev10004385mscaffold_948885314892972J C_unshiu_00386:mRNA_17.1C_unshiu_00386142436145911Ethylene receptorKmG-03211.250JtR-0314.898NAT-0311.970
Af1068 O-----TP Ciclev10021732mscaffold_34011000840113420J C_unshiu_00335:mRNA_13.1C_unshiu_0033599790103133Protein vip1AGI-0548.750
Af1340 ------TP Ciclev10015433mscaffold_23547007835472862
Af1604 ------TP Ciclev10019587mscaffold_34713975647144124
Al0403 ------TP Ciclev10007559mscaffold_12680278726810465
Cp0042 O-----TP Ciclev10018175mscaffold_23340922233411202
Cp1607 ------TP Ciclev10005637mscaffold_92586066525863110
Gn0033 MDisagree by Marco analysis ------TP Ciclev10028247mscaffold_825618452563605J C_unshiu_00363:mRNA_2.1C_unshiu_003631466316198Limonoid UDP-glucosyltransferase-like proteinAGI-0873.527KmG-0886.664NAT-08286.620
Lp0209 ------
Ov0524 ------TP Ciclev10027930mscaffold_82461359724623540