Locus info | Cultivar Idenification | SNP info | Target on C. clementina (v1.0) | Target on C. unshiu (v1.0) | AGI map info (Shimada et al. 2014 Takehiko Shimada, Hiroshi Fujii, Tomoko Endo, Takanori Ueda, Aiko Sugiyama, Michiharu Nakano, Masayuki Kita, Terutaka Yoshioka, Tokuro Shimizu, Hirohisa Nesumi, Yoshinori Ikoma, Takaya Moriguchi, Mitsuo Omura (2014) Construction of a citrus framework genetic map anchored by 708 gene-based markers. Tree Genetics & Genomes. 10: 1001-1013. ) |
KmMg map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
JtTr map info (Omura et al. 2003 Mitsuo Omura, Takanori Ueda, Masayuki Kita, Akira Komatsu, Yuko Takanokura, Takehiko Shimada, Tomoko Endo, Hirohisa Nesumi, ToshioYoshida (2003) EST mapping of Citrus. Proceedings of the International Society of Citriculture IX Congress 2000. 71-74. ) |
Km/O41 map info (Nakano et al. 2003 Mutsuko Nakano, Hirohisa Nesumi, Terutaka Yoshioka, Mitsuo Omura, Toshio Yoshida (2003) Linkage analysis between male sterility of citrus and STS markers. Proceedings of the International Society of Citriculture IX Congress 2000. 179-180 ) |
Rp/Sa map info (Ohta et al. 2011 Satoshi Ohta, Tomoko Endo, Takehiko Shimada, Hiroshi Fujii, Tokuro Shimizu, Takeshi Kuniga, Terutaka Yoshioka, Hiroshisa Nesumi, Toshio Yoshida, Mitsuo Omura (2011) PCR primers for marker assisted backcrossing to introduce a CTV resistance gene from Poncirus trifoliata (L.) Raf. into citrus. Journal of the Japanese Society for Horticultural Science. 80: 295-307. ) |
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Locus name ▲▼ |
Locus name alias ▲▼ |
Rank hybrid cultivar ▲▼ |
Citrus collection O - |
Cultivar identifi- cation manual O - |
Ninomiya et al. 2015 Taizo Ninomiya, Takehiko Shimada, Tomoko Endo, Keisuke Nonaka, Mitsuo Omura, Hiroshi Fujii (2015) Development of Citrus Cultivar Identification by CAPS Markers and Parentage Analysis. Hort. Res. (Japan) 14: 127-133. O - |
Nonaka et al. 2017 Keisuke Nonaka, Hiroshi Fujii, Masayuki Kita, Takehiko Shimada, Tomoko Endo, Terutaka Yoshioka, Mituso Omura (2017) Identification and parentage analysis of citrus cultivars developed in Japan by CAPS Markers. The Horticulture Journal. 86: 208-221. O - |
Graphical map O - |
Genotype O - |
Fujii et al. 2013 Hiroshi Fujii, Takehiko Shimada, Keisuke Nonaka, Masayuki Kita, Takeshi Kuniga,Tomoko Endo, Yoshinori Ikoma, Mitsuo Omura (2013) High-throughput genotyping in citrus accessions using an SNP genotyping array. Tree Genetics & Genomes. 9: 145-153. ▲▼ |
Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Transcript ID ▲▼ |
Scaffold ▲▼ |
Start | End | Gene function ▲▼ |
AGI LG ▲▼ |
AGI cM | KmMg LG ▲▼ |
KmMg cM | JtTr LG ▲▼ |
JtTr cM | Km/O41 LG ▲▼ |
Km/O41 cM | Rp/Sa LG ▲▼ |
Rp/Sa cM |
Bf0028 | DDominant marker | O | - | - | O | - | - | SI001 | ![]() ![]() | scaffold_2 | 35354776 | 35363026 | ![]() | C_unshiu_00048 | 179733 | 188796 | Soluble starch synthase III-1 | AGI-06 | 17.966 | |||||||||
Tf0363 | - | - | - | - | - | - | SI002,SI096 | ![]() ![]() | scaffold_3 | 49318106 | 49324231 | ![]() | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
Tf0321 | - | - | - | - | - | - | SI003 | ![]() ![]() | scaffold_4 | 24341642 | 24346244 | ![]() | C_unshiu_00001 | 1358115 | 1363266 | Putative WRKY transcription factor 57 | ||||||||||||
Wy0025 | - | - | - | - | - | - | SI004 | ![]() ![]() | scaffold_4 | 24434005 | 24435526 | ![]() | C_unshiu_00001 | 1446446 | 1447952 | NAC domain-containing protein 29 | ||||||||||||
Tf0251 | - | - | - | - | - | - | SI005 | ![]() | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | ||||||||||||||||
Tf0094 | - | - | - | - | - | - | SI006 | ![]() ![]() | scaffold_4 | 23957038 | 23959134 | ![]() | C_unshiu_00001 | 950657 | 954895 | Myb family transcription factor APL | AGI-07 | 77.141 | ||||||||||
Wy0020 | - | - | - | - | - | - | SI007 | ![]() ![]() | scaffold_9 | 5549195 | 5553148 | ![]() | C_unshiu_00164 | 17046 | 20923 | Malate dehydrogenase | AGI-03 | 43.563 | ||||||||||
Tf0397 | - | - | - | - | - | - | SI008 | ![]() ![]() | scaffold_6 | 23657256 | 23657810 | ![]() | C_unshiu_00098 | 441975 | 442704 | Ocs element-binding factor 1 | AGI-04 | 40.646 | ||||||||||
Lp0024 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI010,SI302 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | AGI-02 | 74.555 | RP-02.2 | 17.330 | |||||||
Tf0345 | - | - | - | - | - | - | SI011 | ![]() ![]() | scaffold_8 | 22248129 | 22254029 | ![]() | C_unshiu_00639 | 31842 | 37665 | Auxin response factor | ||||||||||||
Tf0263 | - | - | - | - | - | - | SI013 | ![]() ![]() | scaffold_1 | 6358030 | 6359568 | ![]() | C_unshiu_00075 | 227733 | 229211 | Heat shock transcription factor A7a1 | ||||||||||||
Tf0335 | - | - | - | - | - | - | SI014,SI168 | ![]() ![]() | scaffold_4 | 2457798 | 2458868 | ![]() | C_unshiu_00979 | 85390 | 86600 | C2 domain protein | AGI-07 | 13.855 | ||||||||||
Gn0040 | AAvailable marker | - | - | - | - | O | O | SI015,SI337 | ![]() ![]() | scaffold_4 | 16232756 | 16233365 | ![]() | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 43.542 | KmG-07 | 56.094 | JtR-07 | 48.672 | |||||
Mf0039 | AAvailable marker | O | - | - | - | O | O | SI016,SI147 | ![]() | C_unshiu_00343 | 221381 | 224081 | PLAC8 family protein | AGI-05 | 5.510 | KmG-05S | 5.643 | JtR-05 | 10.014 | |||||||||
Mf0070 | MDisagree by Marco analysis | O | - | - | - | - | - | SI017 | ![]() ![]() | scaffold_2 | 3067337 | 3069249 | ![]() | C_unshiu_00246 | 68251 | 69988 | Hypothetical protein | AGI-07 | 36.616 | JtR-07 | 52.611 | RP-07 | 19.079 | |||||
Tf0357 | - | - | - | - | - | - | SI018 | ![]() ![]() | scaffold_7 | 2246732 | 2249558 | ![]() | C_unshiu_01055 | 60614 | 63050 | Zinc finger protein JACKDAW | AGI-02 | 71.294 | ||||||||||
Tf0339 | - | - | - | - | - | - | SI019 | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
Tf0214 | - | - | - | - | - | - | SI020 | ![]() ![]() | scaffold_3 | 50133837 | 50139049 | ![]() | C_unshiu_00014 | 458017 | 462942 | Transcription factor UNE10 | ||||||||||||
Tf0245 | - | - | - | - | - | - | SI021 | ![]() ![]() | scaffold_1 | 18298599 | 18300295 | ![]() | C_unshiu_00548 | 168151 | 169460 | Hypothetical protein | ||||||||||||
Vs0005 | OOthers | O | - | - | - | - | - | SI022,SI075 | ![]() ![]() | scaffold_2 | 33216839 | 33219042 | ![]() | C_unshiu_00002 | 1511809 | 1513915 | Epoxide hydrolase 2 | AGI-06 | 31.521 | KmG-02 | 59.329 | JtR-06S | 50.000 | NAT-06S | 50.000 | |||
Tf0199 | - | - | - | - | - | - | SI023,SI157 | ![]() ![]() | scaffold_5 | 30994812 | 30999834 | ![]() | C_unshiu_00422 | 116754 | 121159 | Serine/threonine-protein kinase isoform 2 | ||||||||||||
Vt0032 | O | - | - | - | - | - | SI024 | ![]() ![]() | scaffold_7 | 17901487 | 17905433 | ![]() | C_unshiu_00382 | 163577 | 167662 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | AGI-02 | 25.601 | RP-02 | 6.081 | ||||||||
Fb0233 | O | - | - | - | - | - | SI025,SI079,SI169 | ![]() ![]() | scaffold_7 | 6535522 | 6540965 | ![]() | C_unshiu_00437 | 131524 | 136642 | WD-40 repeat-containing protein MSI4 | AGI-02 | 47.382 | ||||||||||
Fb0995 | OOthers | O | - | - | - | - | - | SI026 | ![]() ![]() | scaffold_7 | 1180019 | 1202408 | ![]() | C_unshiu_00544 | 97318 | 121662 | FAT domain-containing protein | AGI-02 | 74.555 | KmG-02 | 82.954 | JtR-02 | 10.215 | |||||
Tf0051 | - | - | - | - | - | - | SI027,SI214 | ![]() ![]() | scaffold_3 | 3964036 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | AGI-05 | 25.590 | ||||||||||
Ov0305 | MDisagree by Marco analysis | O | - | - | - | - | - | SI028,SI292 | ![]() ![]() | scaffold_6 | 16909492 | 16912088 | ![]() | C_unshiu_00008 | 366943 | 369504 | 40S ribosomal protein S4 | AGI-08 | 88.433 | KmG-04 | 45.755 | RP-04 | 15.410 | |||||
Al0306 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI029 | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | ![]() | C_unshiu_00199 | 77240 | 79028 | Expansin | JtR-05 | 23.944 | |||||||||
Tf0323 | - | - | - | - | - | - | SI030 | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | ||||||||||||
Wy0019 | - | - | - | - | - | - | SI031 | ![]() ![]() | scaffold_8 | 18064761 | 18071003 | ![]() | C_unshiu_00251 | 118858 | 124101 | Putative axial regulator YABBY 2 | ||||||||||||
Tf0067 | OOthers | O | - | - | - | - | - | SI033,SI187 | ![]() ![]() | scaffold_7 | 8438702 | 8442381 | ![]() | C_unshiu_00290 | 74194 | 77624 | Transcription factor | AGI-02 | 5.104 | |||||||||
Tf0334 | - | - | - | - | - | - | SI034 | ![]() ![]() | scaffold_9 | 30983347 | 30984159 | ![]() | C_unshiu_00003 | 557862 | 561962 | Nuclear transcription factor Y subunit C-9 | ||||||||||||
Tf0396 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI035 | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | |||||||||||
Fb0365 | O | - | - | - | - | - | SI036,SI320 | ![]() ![]() | scaffold_7 | 20872462 | 20874659 | ![]() | C_unshiu_00098 | 264947 | 272086 | Hypothetical protein | AGI-02 | 31.596 | KmG-02 | JtR-02 | -4.953 | |||||||
Wy0023 | - | - | - | - | - | - | SI037 | ![]() ![]() | scaffold_7 | 70855 | 73880 | ![]() | C_unshiu_00706 | 76103 | 78923 | Thioredoxin-disulfide reductase | ||||||||||||
Tf0081 | - | - | - | - | - | - | SI038,SI324 | ![]() ![]() | scaffold_3 | 38214468 | 38216861 | ![]() | C_unshiu_00575 | 47693 | 51431 | Leucine-rich repeat disease resistance protein-like | AGI-05 | 48.590 | ||||||||||
Tf0328 | - | - | - | - | - | - | SI039,SI180 | ![]() ![]() | scaffold_3 | 2530708 | 2533942 | ![]() | C_unshiu_00509 | 178211 | 181426 | Transcription factor bHLH79 | ||||||||||||
Ov0117 | AAvailable marker | O | - | - | - | O | O | SI040 | ![]() ![]() | scaffold_6 | 19105139 | 19113780 | ![]() | C_unshiu_00089 | 153791 | 161685 | Hypothetical protein | AGI-04 | 66.455 | RP-04 | 28.160 | |||||||
Wy0015 | O | - | - | - | - | - | SI041 | ![]() ![]() | scaffold_8 | 13101257 | 13103161 | ![]() | C_unshiu_02878 | 9199 | 10715 | UDP-glycosyltransferase 73C5 | AGI-08 | 56.724 | ||||||||||
If0210 | - | - | - | - | - | - | SI042 | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ![]() | C_unshiu_00052 | 265461 | 267883 | Fructose-bisphosphate aldolase, cytoplasmic isozyme | AGI-02 | 73.759 | ||||||||||
Al0524 | AAvailable marker | O | O | - | - | O | O | SI043,SI341 | ![]() ![]() | scaffold_4 | 115362 | 118025 | ![]() | C_unshiu_02038 | 34256 | 38775 | Hypothetical protein | AGI-07 | 5.972 | JtR-07 | 76.060 | RP-07 | 74.381 | |||||
Tf0386 | AAvailable marker | O | O | O | - | O | O | SI044,SI095 | ![]() ![]() | scaffold_6 | 23593516 | 23595492 | ![]() | C_unshiu_00098 | 370300 | 372260 | COL1 protein | AGI-04 | 41.367 | |||||||||
Al0308 | - | - | - | - | - | - | SI045 | ![]() ![]() | scaffold_8 | 24521116 | 24524868 | ![]() | C_unshiu_00021 | 630527 | 634212 | NAD(P)H dehydrogenase B2 | AGI-05 | 56.788 | ||||||||||
Tf0027 | - | - | - | - | - | - | SI046 | ![]() ![]() | scaffold_7 | 13911684 | 13912447 | ![]() | C_unshiu_00792 | 92331 | 93069 | Ethylene-responsive transcription factor ERF003 | AGI-07 | 38.916 | ||||||||||
Cp0813 | - | - | - | - | - | - | SI047 | ![]() ![]() | scaffold_6 | 20638049 | 20641557 | ![]() | C_unshiu_00046 | 406041 | 409549 | Alpha/beta fold hydrolase | AGI-04 | 58.655 | ||||||||||
Mf0010 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI048,SI149 | ![]() ![]() | scaffold_4 | 19467669 | 19468803 | ![]() | C_unshiu_00099 | 12446 | 13357 | 30S ribosomal protein 3, chloroplastic | AGI-07 | 55.503 | KmG-07 | 42.271 | JtR-07 | 35.215 | NAT-07 | ||||
Tf0257 | - | - | - | - | - | - | SI049 | ![]() ![]() | scaffold_3 | 43654587 | 43656842 | ![]() | C_unshiu_00805 | 5667 | 6759 | Transcription factor bHLH3 | ||||||||||||
Ov0412 | OOthers | - | - | - | - | O | O | SI050,SI222 | ![]() ![]() | scaffold_2 | 31036088 | 31038222 | ![]() | C_unshiu_00143 | 67475 | 69537 | SEC14 cytosolic factor family protein | AGI-06 | 42.110 | KmG-06 | 39.373 | JtR-06S | 15.372 | |||||
Ov0425 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI051,SI291,SI351,SI371 | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | ![]() | C_unshiu_00992 | 79008 | 82132 | DnaJ | AGI-07 | 41.317 | RP-07 | 25.534 | |||||||
Fb0301 | AAvailable marker | - | - | - | - | O | O | SI053 | ![]() ![]() | scaffold_2 | 14143537 | 14146003 | ![]() | C_unshiu_00466 | 13811 | 16178 | 4-coumarate:coenzyme A ligase 4 | AGI-06 | 92.727 | KmG-06 | RP-06.1 | 16.627 | ||||||
Bf0115 | O | - | - | - | - | - | SI054,SI295 | ![]() ![]() | scaffold_8 | 6317205 | 6322458 | ![]() | C_unshiu_00484 | 48216 | 54250 | Squalene synthase | AGI-08 | 58.587 | NAT-081 | 17.717 | ||||||||
Ov0020 | AAvailable marker | O | - | - | - | O | O | SI055,SI143,SI213 | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ![]() | C_unshiu_00037 | 37719 | 40241 | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase | AGI-04 | 55.145 | KmG-04 | 22.465 | NAT-04 | 3.806 | RP-04 | 40.905 | |||
Tf0019 | - | - | - | - | - | - | SI056,SI347 | ![]() ![]() | scaffold_5 | 41881297 | 41883386 | ![]() | C_unshiu_00009 | 1049324 | 1051358 | C2H2-like zinc finger protein | AGI-09 | 34.799 | ||||||||||
Tf0221 | - | - | - | - | - | - | SI057,SI225 | ![]() ![]() | scaffold_7 | 490750 | 492882 | ![]() | C_unshiu_00488 | 44813 | 48259 | Ankyrin repeat domain-containing protein, chloroplastic | AGI-02 | 81.212 | ||||||||||
Al0014 | O | - | - | - | - | - | SI058,SI153,SI312 | ![]() ![]() | scaffold_1 | 1070373 | 1072218 | ![]() | C_unshiu_00005 | 281165 | 283012 | CBL-interacting serine/threonine-protein kinase 20 | AGI-01 | 97.525 | RP-01 | 3.295 | ||||||||
Tf0075 | - | - | - | - | - | - | SI059,SI248 | ![]() ![]() | scaffold_6 | 19142307 | 19156510 | ![]() | C_unshiu_00089 | 108874 | 122025 | Homoserine kinase | AGI-04 | 66.455 | ||||||||||
Bf0177 | - | - | - | - | - | - | SI060 | ![]() ![]() | scaffold_3 | 8186689 | 8189902 | ![]() | C_unshiu_00154 | 341574 | 344576 | Phosphoserine phosphatase | AGI-05 | 44.047 | ||||||||||
Tf0056 | AAvailable marker | O | - | - | - | O | O | SI061,SI137 | ![]() ![]() | scaffold_6 | 22305922 | 22308021 | ![]() | C_unshiu_00252 | 48632 | 49537 | Myb domain protein 42 | AGI-04 | 49.225 | |||||||||
Tf0362 | - | - | - | - | - | - | SI062 | ![]() ![]() | scaffold_7 | 224443 | 227133 | ![]() | C_unshiu_02579 | 13228 | 15002 | WUSCHEL-related homeobox 13 | ||||||||||||
Bf0130 | - | - | - | - | - | - | SI063,SI188 | ![]() ![]() | scaffold_9 | 26981498 | 26984277 | ![]() | C_unshiu_00095 | 228406 | 230902 | F-box family protein isoform 1 | AGI-03 | 40.452 | ||||||||||
Tf0330 | - | - | - | - | - | - | SI064,SI139 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | AGI-06 | 13.470 | ||||||||||
Al0326 | AAvailable marker | - | - | - | O | O | - | SI065,SI344 | ![]() ![]() | scaffold_3 | 6409311 | 6411254 | ![]() | C_unshiu_00443 | 62532 | 64193 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 | AGI-05 | 42.609 | KmG-05S | 32.841 | JtR-05 | 16.025 | RP-05 | 27.235 | |||
Tf0088 | MDisagree by Marco analysis | O | - | - | - | - | - | SI066 | ![]() ![]() | scaffold_5 | 41275201 | 41278829 | ![]() | C_unshiu_00127 | 251592 | 254627 | Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | AGI-09 | 35.763 | |||||||||
Mf0079 | AAvailable marker | O | - | - | - | O | O | SI067 | ![]() ![]() | scaffold_8 | 24721937 | 24724569 | ![]() | C_unshiu_00984 | 55676 | 58212 | Cinnamoyl CoA reductase | AGI-08 | 3.409 | KmG-08 | NAT-082 | |||||||
Wy0016 | - | - | - | - | - | - | SI068 | ![]() ![]() | scaffold_6 | 18491789 | 18493623 | ![]() | C_unshiu_01309 | 21942 | 23382 | UDP-glycosyltransferase 71B1 | KmG-04 | 47.990 | ||||||||||
Fb2130 | - | - | - | - | - | - | SI069,SI117 | ![]() ![]() | scaffold_8 | 24341129 | 24344795 | ![]() | C_unshiu_00021 | 452003 | 461315 | Hypothetical protein | AGI-08 | 11.809 | KmG-08 | 11.813 | ||||||||
Tf0354 | - | - | - | - | - | - | SI070 | ![]() ![]() | scaffold_3 | 48704416 | 48708817 | ![]() | C_unshiu_00018 | 219801 | 223933 | Transcription factor ASG4 | ||||||||||||
Fb1611 | - | - | - | - | - | - | SI071 | ![]() ![]() | scaffold_2 | 27030188 | 27034752 | No | ||||||||||||||||
Tf0376 | AAvailable marker | O | - | - | - | O | O | SI072 | ![]() ![]() | scaffold_3 | 8528292 | 8529236 | ![]() | C_unshiu_00154 | 9832 | 10761 | CRT binding factor 3 | AGI-05 | 41.853 | |||||||||
Tf0279 | - | - | - | - | - | - | SI073 | ![]() ![]() | scaffold_3 | 49031441 | 49035202 | ![]() | C_unshiu_00018 | 562898 | 566588 | Putative anthocyanin regulator | AGI-05 | 80.539 | ||||||||||
Bf0159 | - | - | - | - | - | - | SI074 | ![]() ![]() | scaffold_2 | 13502268 | 13505597 | ![]() | C_unshiu_01990 | 10471 | 13748 | DCD (Development and cell death) domain protein | RP-06.1 | 23.326 | ||||||||||
Tf0219 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI076,SI267 | ![]() ![]() | scaffold_9 | 25662049 | 25666791 | ![]() | C_unshiu_00115 | 248109 | 252610 | Transcription factor bHLH60 | AGI-03 | 49.250 | |||||||||
Vs0003 | AAvailable marker | - | - | - | - | O | O | SI077 | ![]() | C_unshiu_00009 | 675718 | 677501 | Cysteine proteinase RD19a | AGI-09 | 35.312 | KmG-09 | 72.447 | NAT-09 | 93.467 | |||||||||
Ov0301 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI078 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | KmG-05S | 23.526 | JtR-05 | 19.932 | RP-05 | 21.590 | |||||
Lp0102 | MDisagree by Marco analysis | O | - | - | - | - | - | SI080,SI319,SI360,SI378 | ![]() ![]() | scaffold_3 | 30648732 | 30651259 | ![]() | C_unshiu_00759 | 917 | 3353 | Senescence-related gene 1 | AGI-05 | 42.737 | KmG-05S | 41.895 | JtR-05 | 28.682 | NAT-05 | 37.917 | RP-05 | 51.879 | |
Tf0332 | - | - | - | - | - | - | SI081 | ![]() ![]() | scaffold_5 | 37586834 | 37589255 | ![]() | C_unshiu_00985 | 97712 | 99966 | NAC domain-containing protein 2 | AGI-09 | 45.548 | ||||||||||
Tf0303 | - | - | - | - | - | - | SI082 | ![]() ![]() | scaffold_4 | 6325180 | 6334300 | ![]() | C_unshiu_00210 | 52148 | 60690 | Putative lysine-specific demethylase ELF6 | ||||||||||||
If0208 | AAvailable marker | - | O | - | O | O | O | SI083,SI317 | ![]() ![]() | scaffold_5 | 40628244 | 40630241 | ![]() | C_unshiu_00234 | 94988 | 99176 | TRNA-processing ribonuclease BN | AGI-09 | 39.296 | KmG-09 | 72.036 | JtR-09S | 115.150 | NAT-09 | 89.867 | |||
Tf0071 | - | - | - | - | - | - | SI084,SI146 | ![]() ![]() | scaffold_3 | 26610747 | 26612959 | ![]() | C_unshiu_00167 | 57300 | 62494 | HAUS augmin-like complex subunit | AGI-03 | 46.274 | ||||||||||
Tf0326 | AAvailable marker | O | O | - | O | O | O | SI085 | ![]() ![]() | scaffold_7 | 2501520 | 2509737 | ![]() | C_unshiu_02417 | 3692 | 11684 | Histone-lysine N-methyltransferase SUVR5 | AGI-02 | 69.928 | |||||||||
Gn0069 | ULess informative for main cultivars | O | - | - | - | - | - | SI086,SI375 | ![]() ![]() | scaffold_1 | 10946316 | 10949617 | ![]() | C_unshiu_00201 | 212151 | 227232 | Lycopene epsilon cyclase | AGI-01 | 57.863 | |||||||||
Tf0353 | MDisagree by Marco analysis | O | - | - | - | - | - | SI087 | ![]() ![]() | scaffold_3 | 34696661 | 34702240 | ![]() | C_unshiu_00669 | 126539 | 133312 | Cell division cycle 5-like protein | AGI-08 | 53.069 | |||||||||
Tf0373 | - | - | - | - | - | - | SI088 | ![]() ![]() | scaffold_6 | 21229813 | 21233537 | ![]() | C_unshiu_00037 | 387538 | 391239 | Uridylate kinase, putative | AGI-04 | 61.716 | ||||||||||
Bf0161 | - | - | - | - | - | - | SI089,SI348 | ![]() ![]() | scaffold_2 | 6658003 | 6660691 | ![]() | C_unshiu_00072 | 364436 | 365812 | Sequence-specific DNA binding transcription factors | AGI-06 | 144.849 | ||||||||||
Al0302 | AAvailable marker | - | O | - | - | O | O | SI090,SI311 | ![]() ![]() | scaffold_9 | 25073693 | 25080376 | ![]() | C_unshiu_00119 | 346131 | 352710 | Putative seed imbibition protein | AGI-03 | 48.375 | KmG-032 | 18.339 | JtR-033 | NAT-03 | 3.773 | RP-03 | 36.113 | ||
Wy0011 | OOthers | O | - | - | - | - | - | SI091 | ![]() ![]() | scaffold_4 | 24417602 | 24419019 | ![]() | C_unshiu_00001 | 1429943 | 1431279 | Enoyl CoA hydratase/isomerase | AGI-07 | 86.288 | |||||||||
Tf0145 | - | - | - | - | - | - | SI092 | ![]() ![]() | scaffold_3 | 8486491 | 8488997 | ![]() | C_unshiu_00154 | 49131 | 60112 | Floral homeotic protein APETALA 1 | ||||||||||||
Bf0024 | O | - | - | - | - | - | SI093 | ![]() ![]() | scaffold_5 | 38134662 | 38138860 | ![]() | C_unshiu_00319 | 167810 | 171973 | Probable protein phosphatase 2C 11 | AGI-05 | 39.006 | ||||||||||
Tf0085 | - | - | - | - | - | - | SI094,SI211 | ![]() ![]() | scaffold_6 | 2067586 | 2073007 | ![]() | C_unshiu_00176 | 89975 | 97731 | Transcription factor-like protein DPB | AGI-08 | 96.807 | ||||||||||
Bf0213 | - | - | - | - | - | - | SI097 | ![]() ![]() | scaffold_5 | 37693882 | 37699178 | ![]() | C_unshiu_00238 | 14475 | 19398 | DnaJ domain protein | RP-09 | 77.126 | ||||||||||
Tf0358 | - | - | - | - | - | - | SI098 | ![]() ![]() | scaffold_7 | 2049068 | 2051708 | No | ||||||||||||||||
Tf0092 | - | - | - | - | - | - | SI099 | ![]() ![]() | scaffold_1 | 3285601 | 3291534 | ![]() | C_unshiu_00006 | 496127 | 502071 | Class III HD-Zip family protein | ||||||||||||
Bf0193 | O | - | - | - | - | - | SI100,SI109 | ![]() ![]() | scaffold_2 | 35970577 | 35973973 | ![]() | C_unshiu_00077 | 102078 | 105358 | Scarecrow-like transcription factor PAT1 | RP-06.2 | 14.065 | ||||||||||
Tf0059 | - | - | - | - | - | - | SI101 | ![]() ![]() | scaffold_1 | 12883722 | 12897805 | ![]() | C_unshiu_00450 | 36956 | 58462 | AGC family Serine/Threonine kinase family protein | AGI-01 | 56.416 | ||||||||||
Tf0368 | AAvailable marker | O | - | - | - | O | O | SI102 | ![]() ![]() | scaffold_3 | 40963774 | 40965744 | ![]() | C_unshiu_00735 | 76673 | 78652 | NAC transcription factor 29 | AGI-05 | 48.590 | |||||||||
Vs0002 | MDisagree by Marco analysis | - | - | - | - | - | - | SI103,SI115 | ![]() ![]() | scaffold_5 | 41184180 | 41190033 | ![]() | C_unshiu_00127 | 341430 | 344325 | Hypothetical protein | AGI-09 | 36.685 | KmG-09 | 73.930 | JtR-07 | 68.221 | |||||
Tf0050 | - | - | - | - | - | - | SI104,SI346 | ![]() ![]() | scaffold_6 | 24874840 | 24876388 | ![]() | C_unshiu_00135 | 84260 | 85810 | Myb-related protein 306 | AGI-04 | 36.106 | ||||||||||
Tf0302 | - | - | - | - | - | - | SI105 | ![]() ![]() | scaffold_3 | 41769833 | 41772129 | No | ||||||||||||||||
Tf0068 | - | - | - | - | - | - | SI106 | ![]() ![]() | scaffold_3 | 44141305 | 44144453 | ![]() | C_unshiu_00217 | 201916 | 205032 | Heat shock transcription factor A7a1 | AGI-05 | 54.268 | ||||||||||
Ov0314 | AAvailable marker | O | - | - | - | O | O | SI107 | ![]() ![]() | scaffold_8 | 8176371 | 8177435 | ![]() | C_unshiu_00728 | 4070 | 4922 | Mannan polymerase complex subunit mnn9 | AGI-08 | 56.724 | KmG-08 | 58.356 | JtR-08 | 21.829 | RP-08 | 41.217 | |||
Bf1208 | - | - | - | - | - | - | SI108 | No | ||||||||||||||||||||
Ov0002 | AAvailable marker | O | - | - | - | O | O | SI110,SI179 | ![]() ![]() | scaffold_4 | 2422861 | 2424838 | ![]() | C_unshiu_00979 | 50508 | 52478 | 60S ribosomal protein L10 | AGI-07 | 13.657 | JtR-07 | 68.221 | RP-07 | 82.035 | |||||
Tf0026 | O | - | - | - | - | - | SI111,SI288 | ![]() ![]() | scaffold_7 | 285299 | 292550 | ![]() | C_unshiu_00312 | 151229 | 158232 | Ubiquilin | AGI-02 | 78.531 | ||||||||||
Tf0360 | - | - | - | - | - | - | SI112 | ![]() ![]() | scaffold_5 | 38669123 | 38672110 | ![]() | C_unshiu_00430 | 98615 | 101120 | Trihelix transcription factor GT-2 | AGI-09 | 43.140 | ||||||||||
Lp0105 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI113,SI163,SI254 | ![]() ![]() | scaffold_7 | 815904 | 817239 | ![]() | C_unshiu_00353 | 92033 | 93437 | Hypothetical protein | AGI-02 | 75.939 | |||||||||
Tf0238 | - | - | - | - | - | - | SI114 | ![]() ![]() | scaffold_7 | 551893 | 553909 | ![]() | C_unshiu_01559 | 24035 | 34006 | Receptor-like protein kinase THESEUS 1 | ||||||||||||
Tf0022 | MDisagree by Marco analysis | O | - | - | - | - | - | SI116 | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 78.631 | |||||||||
Tf0348 | - | - | - | - | - | - | SI118 | ![]() ![]() | scaffold_6 | 11611994 | 11614367 | ![]() | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | AGI-08 | 96.565 | ||||||||||
Tf0148 | AAvailable marker | O | - | - | - | O | O | SI119 | ![]() ![]() | scaffold_4 | 20998708 | 21001535 | ![]() | C_unshiu_00010 | 869802 | 872410 | Putative WRKY transcription factor 75 | AGI-07 | 64.812 | |||||||||
Al0415 | AAvailable marker | - | - | - | - | O | O | SI120,SI310 | ![]() ![]() | scaffold_9 | 2732900 | 2738896 | ![]() | C_unshiu_00040 | 632823 | 638463 | Mitogen-activated protein kinase 14 | AGI-03 | 24.885 | KmG-031 | NAT-03 | 41.576 | ||||||
Tf0203 | - | - | - | - | - | - | SI121 | ![]() ![]() | scaffold_2 | 10459593 | 10472483 | ![]() | C_unshiu_00403 | 88988 | 102135 | Homeodomain transcriptional regulator | ||||||||||||
Tf0351 | - | - | - | - | - | - | SI122 | ![]() ![]() | scaffold_3 | 43472094 | 43473220 | ![]() | C_unshiu_00411 | 160316 | 161284 | Ethylene-responsive transcription factor 1B | AGI-05 | 52.655 | ||||||||||
Al0633 | OOthers | O | - | - | - | - | O | SI123 | ![]() ![]() | scaffold_2 | 33837403 | 33842156 | ![]() | C_unshiu_00002 | 901824 | 911260 | Vascular plant one zinc finger protein isoform 1 | KmG-06 | 55.857 | JtR-06S | 59.645 | NAT-06S | 51.106 | RP-06.2 | 27.837 | |||
Ov0127 | Ov0126.2 | - | - | - | - | - | - | SI124,SI284 | ![]() ![]() | scaffold_3 | 46814909 | 46817474 | ![]() | C_unshiu_00053 | 477728 | 479995 | ADP-ribosylation factor A1F | AGI-05 | 65.510 | KmG-05S | 81.631 | JtR-05 | 45.715 | RP-05 | 64.195 | |||
Tf0144 | - | - | - | - | - | - | SI125,SI189,SI192 | ![]() ![]() | scaffold_8 | 8009000 | 8012045 | ![]() | C_unshiu_00682 | 86334 | 89311 | Transcription factor bHLH121 | AGI-08 | 56.439 | ||||||||||
Ov0105 | MDisagree by Marco analysis | O | - | - | - | - | - | SI126,SI278 | ![]() ![]() | scaffold_4 | 23552856 | 23556415 | ![]() | C_unshiu_00001 | 545345 | 548897 | Receptor-like kinase plant | NAT-07 | 36.023 | RP-07 | ||||||||
Tf0143 | - | - | - | - | - | - | SI127 | ![]() ![]() | scaffold_9 | 30040457 | 30044615 | ![]() | C_unshiu_00134 | 203848 | 206784 | Sigma factor | AGI-03 | 68.846 | ||||||||||
Tf0149 | HDisagree on Clementine haploid genotype | O | - | - | - | - | - | SI128,SI269 | ![]() ![]() | scaffold_5 | 29400846 | 29403554 | ![]() | C_unshiu_00110 | 160409 | 163111 | Auxin-responsive protein IAA16 | AGI-09 | 85.976 | RP-09 | 32.826 | |||||||
Tf0083 | - | - | - | - | - | - | SI129 | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ![]() | C_unshiu_00412 | 80300 | 82171 | Stay green protein | AGI-05 | 37.103 | ||||||||||
If0003 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI130 | ![]() ![]() | scaffold_2 | 35470078 | 35472862 | ![]() | C_unshiu_00048 | 64652 | 67377 | Aminomethyltransferase | AGI-06 | 18.136 | JtR-06S | 67.371 | |||||||
Mf0012 | AAvailable marker | - | - | - | - | - | O | SI131 | ![]() ![]() | scaffold_3 | 26517176 | 26525778 | No | |||||||||||||||
Tf0350 | OOthers | O | - | - | - | - | - | SI132 | ![]() ![]() | scaffold_3 | 8914744 | 8921411 | ![]() | C_unshiu_00695 | 71483 | 77987 | Acetyl-coenzyme A synthetase | AGI-05 | 43.295 | |||||||||
Tf0177 | - | - | - | - | - | - | SI133 | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | ||||||||||||
Tf0356 | - | - | - | - | - | - | SI134,SI160 | ![]() ![]() | scaffold_8 | 998289 | 1001763 | ![]() | C_unshiu_00041 | 588335 | 591780 | Basic-leucine zipper (BZIP) transcription factor family | AGI-08 | 83.743 | ||||||||||
Tf0077 | O | - | - | - | - | - | SI135 | ![]() ![]() | scaffold_1 | 28433972 | 28437921 | ![]() | C_unshiu_00590 | 86430 | 90131 | WRKY | AGI-01 | 34.814 | ||||||||||
Ov0403 | AAvailable marker | O | - | - | - | O | O | SI136,SI298,SI325 | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ![]() | C_unshiu_00081 | 296655 | 297936 | Chlorophyll a/b binding protein | AGI-06 | 61.779 | KmG-06 | 12.610 | JtR-06S | ||||||
Mf0092 | AAvailable marker | - | - | - | - | O | O | SI138 | ![]() ![]() | scaffold_6 | 21137783 | 21142157 | ![]() | C_unshiu_00052 | 168316 | 172622 | Phosphopyruvate hydratase | AGI-04 | 59.190 | KmG-04 | 30.795 | NAT-04 | 11.576 | |||||
Tf0230 | - | - | - | - | - | - | SI140 | ![]() ![]() | scaffold_1 | 23463843 | 23470911 | ![]() | C_unshiu_00338 | 163174 | 169978 | NAD-dependent protein deacetylase SRT1 | ||||||||||||
Bf0123 | - | - | - | - | - | - | SI141 | ![]() ![]() | scaffold_6 | 15803864 | 15809998 | ![]() | C_unshiu_00284 | 114758 | 120828 | Sulfoquinovosyldiacylglycerol 2 | AGI-08 | 92.221 | RP-04 | 10.226 | ||||||||
Tf0065 | - | - | - | - | - | - | SI142 | ![]() ![]() | scaffold_4 | 13945795 | 13951313 | ![]() | C_unshiu_00357 | 35189 | 39739 | Auxin response factor | AGI-07 | 41.876 | ||||||||||
Gn0064 | ULess informative for main cultivars | O | - | - | - | - | - | SI144,SI380 | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ![]() | C_unshiu_00549 | 39588 | 41921 | 9-cis-epoxycarotenoid dioxygenase 1 | AGI-05 | 42.191 | RP-05 | 51.531 | |||||||
Tf0317 | - | - | - | - | - | - | SI145 | ![]() ![]() | scaffold_3 | 2106810 | 2109266 | ![]() | C_unshiu_00490 | 159122 | 161521 | Transcription factor bHLH47 | ||||||||||||
Tf0061 | - | - | - | - | - | - | SI150,SI186 | ![]() ![]() | scaffold_5 | 35159690 | 35164384 | ![]() | C_unshiu_00764 | 30899 | 36628 | Auxin-responsive protein IAA8 | AGI-09 | 61.651 | ||||||||||
Tf0342 | - | - | - | - | - | - | SI151 | ![]() ![]() | scaffold_3 | 1649410 | 1655963 | ![]() | C_unshiu_00343 | 203038 | 209504 | DNA repair helicase | AGI-05 | 5.510 | ||||||||||
Tf0319 | - | - | - | - | - | - | SI152 | ![]() ![]() | scaffold_7 | 6872666 | 6877291 | ![]() | C_unshiu_00166 | 78780 | 83374 | Putative PHD finger protein ALFIN-LIKE 4-like | AGI-02 | 44.258 | ||||||||||
Tf0020 | - | - | - | - | - | - | SI154 | ![]() ![]() | scaffold_7 | 2289455 | 2291216 | ![]() | C_unshiu_00025 | 258446 | 260200 | Homeobox leucine zipper protein | AGI-02 | 71.294 | ||||||||||
Fb0103 | OOthers | O | - | - | - | - | - | SI155 | ![]() ![]() | scaffold_1 | 22758712 | 22761740 | ![]() | C_unshiu_00103 | 160138 | 163082 | GDP-L-galactose phosphorylase | AGI-01 | 30.703 | JtR-01S | 6.418 | |||||||
Tf0166 | - | - | - | - | - | - | SI156 | ![]() ![]() | scaffold_5 | 19682579 | 19686163 | ![]() | C_unshiu_00050 | 140837 | 153470 | Hypothetical protein | AGI-09 | 101.351 | ||||||||||
Tf0280 | - | - | - | - | - | - | SI158,SI200 | ![]() ![]() | scaffold_7 | 3429964 | 3433239 | ![]() | C_unshiu_00301 | 159835 | 163045 | Floral homeotic protein APETALA 2 | AGI-05 | 54.268 | ||||||||||
Tf0151 | AAvailable marker | O | - | - | - | O | O | SI159,SI281 | ![]() ![]() | scaffold_5 | 35357333 | 35359897 | No | AGI-09 | 60.528 | RP-09 | 41.892 | |||||||||||
Tf0013 | OOthers | O | O | O | - | O | O | SI161,SI362 | ![]() ![]() | scaffold_8 | 13408610 | 13413938 | ![]() | C_unshiu_01226 | 20559 | 25720 | DNA replication licensing factor MCM2 | AGI-08 | 56.123 | |||||||||
Cp2154 | - | - | - | - | - | - | SI164 | ![]() ![]() | scaffold_1 | 20462860 | 20465557 | ![]() | C_unshiu_00670 | 44502 | 47121 | 50S ribosomal protein L24, chloroplastic | ||||||||||||
Bf0147 | - | - | - | - | - | - | SI165 | ![]() ![]() | scaffold_2 | 5975367 | 5977280 | ![]() | C_unshiu_00260 | 124629 | 126502 | Flavonoid 3'-monooxygenase | RP-06.1 | 47.841 | ||||||||||
Tf0087 | - | - | - | - | - | - | SI166,SI271,SI287 | ![]() ![]() | scaffold_4 | 11412331 | 11417624 | ![]() | C_unshiu_00019 | 190344 | 195992 | Two-component response regulator-like APRR2 | AGI-07 | 35.897 | ||||||||||
Fb0124 | - | - | - | - | - | - | SI167,SI212 | ![]() ![]() | scaffold_2 | 11088808 | 11095416 | ![]() | C_unshiu_00184 | 275231 | 281575 | Phosphoenolpyruvate carboxylase | ||||||||||||
Lp0122 | MDisagree by Marco analysis | O | - | - | - | - | - | SI170 | ![]() ![]() | scaffold_7 | 1309884 | 1311067 | ![]() | C_unshiu_00218 | 98317 | 107740 | Heterogeneous nuclear ribonucleoprotein Q | NAT-02S | 69.942 | RP-02.2 | 17.330 | |||||||
Ov0109 | MDisagree by Marco analysis | O | - | - | - | - | - | SI172,SI202 | ![]() ![]() | scaffold_9 | 30513333 | 30517676 | ![]() | C_unshiu_00003 | 122283 | 126575 | Elongation factor 2 | AGI-03 | 71.060 | JtR-032 | 13.729 | RP-03 | 71.532 | |||||
If0216 | OOthers | O | - | - | - | - | - | SI174 | ![]() ![]() | scaffold_2 | 12876952 | 12881843 | ![]() | C_unshiu_01838 | 23594 | 31186 | Hypothetical protein | AGI-09 | 74.076 | KmG-01 | 26.420 | JtR-01S | 66.382 | RP-09 | 29.224 | |||
Tf0168 | AAvailable marker | O | O | - | O | O | O | SI175 | ![]() ![]() | scaffold_1 | 24898769 | 24905716 | ![]() | C_unshiu_00341 | 170777 | 178753 | AT-rich interactive domain-containing protein 4 | AGI-01 | 25.752 | |||||||||
Gn0008 | OOthers | - | - | - | - | - | - | SI176 | ![]() ![]() | scaffold_9 | 17789634 | 17793258 | ![]() | C_unshiu_00098 | 5120 | 17442 | Phytoene desaturase | AGI-03 | 46.274 | |||||||||
Al0515 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI178 | ![]() ![]() | scaffold_8 | 2673135 | 2674232 | ![]() | C_unshiu_00152 | 273851 | 275034 | DNA-damage-repair/toleration protein DRT100 | AGI-08 | 73.663 | JtR-08 | 14.154 | NAT-081 | 10.596 | |||||
Tf0208 | - | - | - | - | - | - | SI181 | ![]() ![]() | scaffold_6 | 23593516 | 23595492 | ![]() | C_unshiu_00098 | 370300 | 372260 | COL1 protein | ||||||||||||
Tf0301 | - | - | - | - | - | - | SI182 | ![]() ![]() | scaffold_3 | 5318874 | 5321054 | ![]() | C_unshiu_00442 | 123398 | 125451 | Homeobox-leucine zipper protein HAT3 | ||||||||||||
Tf0210 | - | - | - | - | - | - | SI183 | ![]() ![]() | scaffold_9 | 11993282 | 11999324 | ![]() | C_unshiu_00926 | 108384 | 111875 | Zinc finger protein NUTCRACKER | AGI-08 | 56.724 | ||||||||||
Tf0240 | - | - | - | - | - | - | SI184 | ![]() ![]() | scaffold_3 | 42718991 | 42733040 | ![]() | C_unshiu_00386 | 164396 | 178993 | Myosin 2 | ||||||||||||
Al0329 | AAvailable marker | O | - | - | - | O | O | SI185 | ![]() ![]() | scaffold_7 | 17201236 | 17204282 | ![]() | C_unshiu_00421 | 196945 | 199790 | Actin | AGI-02 | 25.162 | KmG-02 | 11.218 | JtR-02 | 7.174 | NAT-02S | 5.552 | RP-02 | 8.191 | |
Tf0309 | - | - | - | - | - | - | SI190 | ![]() ![]() | scaffold_3 | 45314016 | 45316651 | ![]() | C_unshiu_00546 | 158416 | 160829 | TLP domain class transcription factor | AGI-05 | 57.948 | ||||||||||
Fb0144 | AAvailable marker | - | - | - | - | O | O | SI191 | ![]() ![]() | scaffold_3 | 50861813 | 50866146 | ![]() | C_unshiu_00206 | 283219 | 294491 | Hypothetical protein | AGI-05 | 107.806 | |||||||||
Bf0029 | MDisagree by Marco analysis | - | - | - | O | - | - | SI193,SI283 | ![]() | C_unshiu_00564 | 138967 | 142178 | Limonene synthase | AGI-09 | 84.912 | KmG-09 | 24.379 | JtR-09S | 5.526 | |||||||||
Bf0005 | - | - | - | - | - | - | SI194 | ![]() ![]() | scaffold_9 | 465444 | 468143 | ![]() | C_unshiu_00007 | 710354 | 712926 | Phosphatase 2C family protein | AGI-03 | 8.177 | ||||||||||
Tf0201 | O | - | - | - | - | - | SI195 | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | ||||||||||||
Tf0212 | - | - | - | - | - | - | SI196 | ![]() ![]() | scaffold_4 | 19816800 | 19825304 | ![]() | C_unshiu_00535 | 166525 | 174142 | Putative nuclear matrix constituent protein 1-like protein | AGI-07 | 56.586 | ||||||||||
Tf0265 | - | - | - | - | - | - | SI197 | ![]() ![]() | scaffold_3 | 49318106 | 49324231 | ![]() | C_unshiu_00018 | 839780 | 845037 | Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||||||||||
Fb0293 | - | - | - | - | - | - | SI198,SI374 | ![]() | C_unshiu_00152 | 259580 | 269499 | Hypothetical protein | AGI-08 | 73.663 | ||||||||||||||
Tf0069 | - | - | - | - | - | - | SI199 | ![]() ![]() | scaffold_5 | 38566192 | 38571337 | ![]() | C_unshiu_00183 | 20134 | 26910 | Transcription factor RF2b | AGI-09 | 42.789 | RP-09 | 77.126 | ||||||||
Al0409 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI201,SI252 | ![]() ![]() | scaffold_7 | 5042508 | 5046271 | No | AGI-02 | 50.758 | KmG-02 | 44.930 | JtR-02 | 29.462 | NAT-02S | 90.742 | |||||||
Tf0320 | - | - | - | - | - | - | SI203 | ![]() ![]() | scaffold_4 | 16223771 | 16226683 | ![]() | C_unshiu_00086 | 99963 | 109609 | AG MADS-box protein | AGI-07 | 45.716 | ||||||||||
Gn0067 | OOthers | O | - | - | - | - | - | SI204,SI349 | ![]() ![]() | scaffold_9 | 22728310 | 22730086 | ![]() | C_unshiu_00295 | 207257 | 208985 | Lycopene beta-cyclase | AGI-03 | 46.274 | |||||||||
Fb2159 | - | - | - | - | - | - | SI205,SI300 | ![]() ![]() | scaffold_3 | 39606431 | 39608387 | ![]() | C_unshiu_00037 | 551437 | 553057 | Pirin family protein | AGI-05 | 49.856 | KmG-05S | 68.781 | JtR-05 | 41.770 | SA-09 | |||||
Tf0289 | - | - | - | - | - | - | SI207 | ![]() ![]() | scaffold_3 | 915818 | 919213 | ![]() | C_unshiu_01070 | 43545 | 46732 | Putative E3 ubiquitin-protein ligase UBR7 | ||||||||||||
If0206 | DDominant marker | - | - | - | - | - | - | SI208 | ![]() ![]() | scaffold_6 | 15192652 | 15194091 | ![]() | C_unshiu_00034 | 662958 | 664402 | Universal stress protein A-like protein | |||||||||||
Fb0180 | - | - | - | - | - | - | SI209 | ![]() ![]() | scaffold_9 | 27734482 | 27736035 | ![]() | C_unshiu_00252 | 12109 | 13626 | Hypothetical protein | RP-03 | 56.919 | ||||||||||
Lp0226 | O | - | - | - | - | - | SI210 | ![]() ![]() | scaffold_8 | 2831832 | 2837109 | ![]() | C_unshiu_00152 | 138714 | 144356 | Embryonic polyadenylate-binding protein | AGI-08 | 73.527 | ||||||||||
Fb0827 | O | - | - | - | - | - | SI215,SI301 | ![]() ![]() | scaffold_9 | 2353442 | 2357780 | ![]() | C_unshiu_00394 | 41719 | 45690 | Chloroplast 1-deoxy-D-xylulose-5-phosphate synthase | AGI-03 | 19.017 | KmG-031 | 16.544 | JtR-034 | |||||||
Ov0104 | AAvailable marker | O | - | - | - | O | O | SI216 | ![]() ![]() | scaffold_9 | 13440332 | 13442904 | ![]() | C_unshiu_02379 | 22906 | 25482 | Obtusifoliol 14-alpha demethylase | AGI-08 | 56.724 | JtR-08 | 28.207 | |||||||
Bf0011 | AAvailable marker | O | - | - | - | O | O | SI218 | ![]() ![]() | scaffold_1 | 4722889 | 4726339 | ![]() | C_unshiu_00547 | 54556 | 57654 | NADH-cytochrome b5 reductase | AGI-01 | 67.331 | RP-01 | 23.653 | |||||||
Tf0004 | - | - | - | - | - | - | SI219,SI330 | ![]() ![]() | scaffold_2 | 33074821 | 33084014 | ![]() | C_unshiu_00153 | 66406 | 75053 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 | AGI-06 | 32.312 | ||||||||||
Mf0086 | AAvailable marker | O | - | - | - | O | O | SI220,SI315 | ![]() ![]() | scaffold_1 | 25592494 | 25593617 | ![]() | C_unshiu_00066 | 500992 | 501833 | 17.9 kDa class II heat shock protein | AGI-01 | 26.428 | KmG-01 | 19.692 | JtR-01S | 57.666 | RP-01 | 69.936 | |||
Tf0066 | - | - | - | - | - | - | SI221 | ![]() ![]() | scaffold_1 | 18270818 | 18273015 | ![]() | C_unshiu_00187 | 287391 | 289585 | NAC domain-containing protein 72 | AGI-01 | 58.420 | ||||||||||
Tf0062 | Bno homozygous cultivar with minor allele | O | - | - | O | - | - | SI223 | ![]() ![]() | scaffold_6 | 11826472 | 11830875 | ![]() | C_unshiu_00207 | 252955 | 255240 | Transcription factor ASG4 | AGI-08 | 93.624 | |||||||||
If0211 | AAvailable marker | - | - | - | - | O | O | SI226 | No | AGI-09 | 47.410 | KmG-09 | 60.856 | |||||||||||||||
Fb0159 | AAvailable marker | O | - | - | - | O | O | SI227 | ![]() ![]() | scaffold_8 | 23456630 | 23459052 | ![]() | C_unshiu_00375 | 27952 | 30443 | O-Glycosyl hydrolases family 17 protein | AGI-08 | 13.499 | KmG-08 | 9.978 | RP-08 | 2.327 | |||||
Mf0003 | AAvailable marker | - | - | - | - | - | O | SI228 | ||||||||||||||||||||
Tf0167 | - | - | - | - | - | - | SI230,SI241,SI247 | ![]() ![]() | scaffold_4 | 17143350 | 17147918 | ![]() | C_unshiu_00478 | 19232 | 27824 | Sigma factor | AGI-07 | 46.244 | ||||||||||
Tf0243 | - | - | - | - | - | - | SI231 | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ![]() | C_unshiu_00236 | 271647 | 281392 | Nuclear transcription factor Y subunit B-8 | ||||||||||||
Bf0218 | O | - | - | - | - | - | SI232 | ![]() ![]() | scaffold_5 | 36036990 | 36048487 | ![]() | C_unshiu_00406 | 134274 | 145322 | Isoamylase | AGI-09 | 53.205 | KmG-09 | 37.847 | RP-09 | 70.349 | ||||||
Bf0109 | - | - | - | - | - | - | SI233 | ![]() ![]() | scaffold_4 | 1970129 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | RP-07 | 51.394 | ||||||||||
Tf0258 | - | - | - | - | - | - | SI234 | ![]() ![]() | scaffold_5 | 41372513 | 41377106 | ![]() | C_unshiu_00127 | 163658 | 166645 | BEL1-like homeodomain protein 6 | ||||||||||||
Mf0097 | AAvailable marker | O | O | - | O | O | O | SI235,SI365 | No | AGI-07 | 44.663 | KmG-07 | 50.959 | JtR-07 | 44.863 | NAT-07 | 3.290 | RP-07 | 46.168 | |||||||||
Bf0205 | O | - | - | - | - | - | SI236 | ![]() ![]() | scaffold_7 | 3541924 | 3543863 | ![]() | C_unshiu_00301 | 55570 | 57462 | WRKY | ||||||||||||
Cp1738 | AAvailable marker | - | - | - | - | - | O | SI237,SI296 | ![]() ![]() | scaffold_7 | 5388458 | 5389981 | ![]() | C_unshiu_00303 | 100918 | 102276 | Putative clathrin assembly protein | |||||||||||
Tf0054 | O | - | - | - | - | - | SI238 | ![]() ![]() | scaffold_5 | 43108998 | 43114214 | ![]() | C_unshiu_01422 | 15150 | 33598 | Hypothetical protein | AGI-09 | 21.045 | ||||||||||
Fb0223 | - | - | - | - | - | - | SI240 | ![]() | C_unshiu_00303 | 108935 | 110191 | E3 ubiquitin-protein ligase ATL6 | RP-08 | 15.967 | ||||||||||||||
Ov0005 | AAvailable marker | - | - | - | - | O | O | SI243,SI331 | ![]() ![]() | scaffold_3 | 41636616 | 41641083 | ![]() | C_unshiu_02126 | 9391 | 13319 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | AGI-05 | 47.986 | |||||||||
Al0417 | MDisagree by Marco analysis | O | - | - | - | - | - | SI244,SI255 | ![]() ![]() | scaffold_2 | 35212691 | 35214865 | ![]() | C_unshiu_00048 | 328418 | 330513 | Kelch repeat-containing F-box family protein | AGI-06 | 20.297 | KmG-06 | 62.256 | NAT-06S | 56.647 | |||||
Bf1186 | - | - | - | - | - | - | SI245 | ![]() ![]() | scaffold_6 | 21912438 | 21917736 | ![]() | C_unshiu_00079 | 278696 | 283911 | R3H domain-containing protein 2 | ||||||||||||
Fb0110 | O | - | - | - | - | - | SI246 | ![]() ![]() | scaffold_5 | 8512380 | 8517835 | ![]() | C_unshiu_00033 | 37755 | 43368 | Bifunctional protein thiED | AGI-09 | 85.810 | KmG-09 | 23.401 | JtR-09S | 5.362 | ||||||
Mf0096 | OOthers | - | - | - | - | - | - | SI249,SI333 | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ![]() | C_unshiu_00745 | 48150 | 62370 | Hypothetical protein | AGI-06 | 60.007 | KmG-06 | 22.141 | JtR-06S | 5.708 | NAT-06S | 10.082 | |||
Fb0234 | - | - | - | - | - | - | SI250,SI265 | ![]() ![]() | scaffold_4 | 16176836 | 16178421 | ![]() | C_unshiu_00086 | 52764 | 54349 | Protodermal factor 1.3, putative | AGI-07 | 45.424 | RP-07 | 30.993 | ||||||||
Bf0229 | - | - | - | - | - | - | SI253 | ![]() ![]() | scaffold_9 | 17242218 | 17245901 | ![]() | C_unshiu_00122 | 118693 | 122329 | Selenium binding protein | AGI-03 | 46.274 | RP-03 | 37.885 | ||||||||
If0205 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI256 | ![]() | C_unshiu_00046 | 551244 | 556744 | Hypothetical protein | AGI-04 | 86.280 | KmG-04 | 52.960 | |||||||||||
Tf0058 | - | - | - | - | - | - | SI257 | ![]() ![]() | scaffold_1 | 20885102 | 20889283 | ![]() | C_unshiu_00395 | 50978 | 54866 | Fertilization-independent endosperm protein | AGI-01 | 46.623 | ||||||||||
Tf0232 | - | - | - | - | - | - | SI258,SI261 | ![]() ![]() | scaffold_5 | 37066208 | 37070717 | ![]() | C_unshiu_00773 | 31351 | 35269 | Histone-lysine N-methyltransferase ASHR1 | ||||||||||||
Al0304 | MDisagree by Marco analysis | - | - | - | - | - | - | SI259,SI293 | ![]() ![]() | scaffold_6 | 22616979 | 22619271 | ![]() | C_unshiu_00038 | 174815 | 175255 | Nutrient reservoir, putative | AGI-04 | 46.361 | KmG-04 | 16.744 | NAT-04 | RP-04 | 54.617 | ||||
Bf0116 | - | - | - | - | - | - | SI260 | ![]() ![]() | scaffold_2 | 7662753 | 7667440 | ![]() | C_unshiu_00729 | 81415 | 86474 | Aminotransferase 2 | AGI-06 | 133.800 | RP-06.1 | 28.601 | ||||||||
Tf0150 | AAvailable marker | O | O | - | O | O | O | SI262 | ![]() ![]() | scaffold_8 | 22191056 | 22193554 | ![]() | C_unshiu_01354 | 51348 | 53833 | Zinc finger protein JACKDAW | AGI-08 | 25.220 | |||||||||
Bf0164 | ULess informative for main cultivars | O | - | - | - | - | - | SI263 | ![]() ![]() | scaffold_5 | 43060442 | 43066562 | ![]() | C_unshiu_00370 | 217887 | 223455 | Pyrophosphate-dependent phosphofructokinase alpha subunit | AGI-09 | 21.471 | NAT-09 | 111.981 | RP-09 | 94.065 | |||||
Fb1751 | - | - | - | - | - | - | SI264 | ![]() ![]() | scaffold_7 | 7977527 | 7984425 | ![]() | C_unshiu_00121 | 250743 | 257054 | Protein STRUBBELIG-RECEPTOR FAMILY 8 | ||||||||||||
Tf0076 | - | - | - | - | - | - | SI266 | ![]() ![]() | scaffold_4 | 7200135 | 7204232 | ![]() | C_unshiu_00013 | 459064 | 463137 | NAC domain-containing protein 78 | AGI-07 | 38.565 | ||||||||||
Tf0079 | MDisagree by Marco analysis | O | - | - | O | - | - | SI270,SI294 | ![]() ![]() | scaffold_3 | 7047024 | 7049430 | ![]() | C_unshiu_00425 | 35608 | 38027 | Heat stress transcription factor B-4 | AGI-05 | 45.092 | |||||||||
Bf0145 | O | - | - | O | - | - | SI272,SI327,SI368 | ![]() ![]() | scaffold_8 | 22730839 | 22737522 | ![]() | C_unshiu_00158 | 102548 | 109253 | Pseudo-response regulator 37 | AGI-08 | 20.703 | RP-08 | 5.775 | ||||||||
Bf0004 | - | - | - | - | - | - | SI273 | ![]() ![]() | scaffold_9 | 29563003 | 29568705 | ![]() | C_unshiu_00056 | 220997 | 225323 | Pentatricopeptide repeat superfamily protein, putative isoform 1 | AGI-03 | 58.312 | ||||||||||
Tf0205 | OOthers | O | - | - | - | - | - | SI274 | ![]() ![]() | scaffold_9 | 16383851 | 16393557 | ![]() | C_unshiu_00094 | 262934 | 272307 | UBX domain-containing protein 1 | AGI-03 | 46.274 | |||||||||
Al0413 | AAvailable marker | - | - | - | O | O | O | SI275,SI299 | ![]() ![]() | scaffold_9 | 7579900 | 7583093 | ![]() | C_unshiu_00063 | 483279 | 486427 | Chloroplast beta-amylase 3 | AGI-03 | 46.197 | KmG-032 | 19.570 | JtR-031 | 10.395 | RP-03 | 33.559 | |||
Lp0119 | AAvailable marker | - | - | - | - | O | O | SI276 | ![]() ![]() | scaffold_8 | 24315720 | 24317671 | ![]() | C_unshiu_00021 | 426040 | 431920 | Hypothetical protein | AGI-08 | 8.544 | |||||||||
Tf0070 | OOthers | O | - | - | - | - | - | SI277 | ![]() ![]() | scaffold_5 | 39748754 | 39753073 | ![]() | C_unshiu_01089 | 22643 | 26826 | Basic helix-loop-helix family protein | AGI-09 | 45.029 | |||||||||
Bf0165 | - | - | - | - | - | - | SI280 | ![]() ![]() | scaffold_3 | 4903592 | 4905871 | ![]() | C_unshiu_00628 | 38419 | 40239 | Bax inhibitor 1 | AGI-05 | 29.035 | NAT-05 | 23.083 | RP-05 | 19.690 | ||||||
Bf0174 | O | - | - | - | - | - | SI282 | ![]() ![]() | scaffold_3 | 3551542 | 3555978 | ![]() | C_unshiu_00120 | 130029 | 134158 | Atp-dependent RNA helicase | AGI-05 | 25.049 | ||||||||||
Tf0017 | - | - | - | - | - | - | SI285 | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | AGI-05 | 28.617 | ||||||||||
Lp0032 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI286 | ![]() | C_unshiu_00679 | 124222 | 132199 | CwfJ-like family protein, putative isoform 1 | |||||||||||||||
Gn0048 | AAvailable marker | - | O | - | - | O | O | SI289 | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | AGI-07 | 74.225 | KmG-07 | 7.964 | JtR-07 | 4.200 | |||||
Mf0095 | OOthers | O | - | - | - | - | - | SI290 | ![]() ![]() | scaffold_9 | 21216748 | 21221111 | ![]() | C_unshiu_00160 | 290257 | 294371 | Transmembrane proteins 14C, putative isoform 1 | KmG-032 | JtR-031 | 11.958 | RP-03 | 43.323 | ||||||
Bf0110 | - | - | - | - | - | - | SI297 | ![]() ![]() | scaffold_2 | 35235517 | 35237892 | ![]() | C_unshiu_00048 | 306412 | 308620 | 9-cis-epoxycarotenoid dioxygenase 1 | ||||||||||||
Tf0045 | - | - | - | - | - | - | SI303,SI321 | ![]() ![]() | scaffold_4 | 23496020 | 23497466 | ![]() | C_unshiu_00001 | 490607 | 491890 | Homeobox transcription factor | AGI-07 | 74.573 | ||||||||||
Ov0015 | OOthers | O | - | - | - | - | - | SI304 | ![]() ![]() | scaffold_7 | 8255046 | 8256442 | ![]() | C_unshiu_02827 | 15986 | 17224 | Stem 28 kDa glycoprotein | AGI-02 | 34.494 | KmG-02 | 35.126 | JtR-02 | 19.319 | |||||
Tf0053 | - | - | - | - | - | - | SI305 | ![]() ![]() | scaffold_3 | 29153425 | 29156189 | ![]() | C_unshiu_01169 | 39141 | 41442 | Peptide methionine sulfoxide reductase B5 | AGI-05 | 42.265 | ||||||||||
Gn0051 | AAvailable marker | - | - | - | - | O | O | SI306,SI366 | ![]() ![]() | scaffold_6 | 24082263 | 24084635 | ![]() | C_unshiu_00133 | 63870 | 65165 | Protein UNUSUAL FLORAL ORGANS | AGI-04 | 39.510 | KmG-04 | 0.447 | |||||||
Cp1624 | AAvailable marker | - | O | - | O | O | O | SI307 | ![]() ![]() | scaffold_1 | 18068297 | 18070262 | ![]() | C_unshiu_00187 | 99220 | 100762 | CBS domain-containing protein CBSX5 | AGI-01 | 58.420 | KmG-01 | 53.054 | |||||||
Bf0183 | O | - | - | - | - | - | SI308 | ![]() ![]() | scaffold_9 | 5254416 | 5256826 | ![]() | C_unshiu_01106 | 77275 | 79234 | Hypothetical protein | ||||||||||||
Bf0008 | - | - | - | - | - | - | SI309 | ![]() ![]() | scaffold_6 | 22467565 | 22470029 | ![]() | C_unshiu_00038 | 40983 | 43503 | Pollen-specific C2 domain containing protein | AGI-04 | 47.391 | RP-04 | 50.862 | ||||||||
Al0636 | AAvailable marker | O | - | - | O | O | O | SI313 | ![]() ![]() | scaffold_1 | 23776796 | 23782088 | ![]() | C_unshiu_00080 | 464290 | 469444 | WW domain-containing protein | AGI-01 | 27.489 | KmG-01 | 25.751 | JtR-01S | 63.210 | NAT-01S | 12.652 | RP-01 | 48.896 | |
Bf0150 | - | - | - | - | - | - | SI316,SI370 | ![]() ![]() | scaffold_9 | 31018836 | 31027361 | ![]() | C_unshiu_00003 | 596288 | 610960 | Aldehyde dehydrogenase | AGI-03 | 77.920 | RP-03 | 77.748 | ||||||||
Ov0508 | Ov0507.2 | - | - | - | - | - | - | SI322 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 8.291 | JtR-07 | 76.060 | |||||||
Gn0043 | MDisagree by Marco analysis | - | - | - | O | - | - | SI323 | ![]() ![]() | scaffold_8 | 21953129 | 21960709 | ![]() | C_unshiu_02574 | 2470 | Class III homeodomain leucine zipper protein | AGI-08 | 30.721 | KmG-08 | 27.458 | ||||||||
Bf0204 | - | - | - | - | - | - | SI326 | ![]() ![]() | scaffold_7 | 3222483 | 3228894 | ![]() | C_unshiu_00084 | 139704 | 145312 | Zeaxanthin epoxidase, chloroplastic | RP-02.2 | 9.835 | ||||||||||
Tf0049 | - | - | - | - | - | - | SI328 | ![]() ![]() | scaffold_1 | 24273993 | 24277800 | ![]() | C_unshiu_00047 | 212549 | 221653 | WD domain protein-like | AGI-01 | 26.841 | ||||||||||
Al0625 | AAvailable marker | O | - | - | - | O | O | SI329 | ![]() | C_unshiu_00139 | 346138 | 349862 | Regulator of chromosome condensation family protein | AGI-04 | 66.455 | RP-04 | 23.717 | |||||||||||
Bf0212 | - | - | - | - | - | - | SI332 | ![]() ![]() | scaffold_2 | 9206686 | 9211152 | ![]() | C_unshiu_00004 | 401860 | 406444 | Carbonate dehydratase | AGI-06 | 117.593 | ||||||||||
Bf0200 | OOthers | - | - | - | - | - | - | SI335 | ![]() ![]() | scaffold_2 | 29022433 | 29030724 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | |||||||||||
Fb1916 | - | - | - | - | - | - | SI336 | ![]() ![]() | scaffold_2 | 12043969 | 12046230 | ![]() | C_unshiu_00026 | 110679 | 112686 | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 | RP-06.1 | 24.027 | ||||||||||
Cp0870 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI338 | ![]() ![]() | scaffold_4 | 642157 | 644823 | ![]() | C_unshiu_00202 | 127322 | 129988 | Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic | AGI-07 | 5.180 | |||||||||
Cp0996 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI340 | ![]() ![]() | scaffold_9 | 543444 | 546746 | ![]() | C_unshiu_00007 | 630727 | 633783 | Neutral/alkaline invertase | AGI-03 | 9.366 | |||||||||
Ks9005 | AAvailable marker | O | - | - | - | O | O | SI342 | ![]() ![]() | scaffold_2 | 290799 | 294122 | ![]() | C_unshiu_00109 | 219070 | 222359 | TRNA-splicing ligase RtcB | AGI-02 | 13.646 | KmG-02 | 23.647 | RP-02 | 16.986 | |||||
Fb0372 | - | - | - | - | - | - | SI343,SI052 | ![]() ![]() | scaffold_5 | 35123213 | 35124730 | ![]() | C_unshiu_00042 | 237022 | 238272 | Ubiquitin-fold modifier-conjugating enzyme 1 | AGI-09 | 59.896 | ||||||||||
Tf0016 | - | - | - | - | - | - | SI345 | ![]() ![]() | scaffold_5 | 39839984 | 39841860 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | AGI-09 | 42.158 | ||||||||||
Al0217 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | SI350 | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | No | KmG-05S | JtR-05 | 25.182 | ||||||||||||
Al0637 | AAvailable marker | O | - | - | - | - | O | SI353 | ![]() ![]() | scaffold_3 | 2939620 | 2941934 | ![]() | C_unshiu_00092 | 363486 | 365791 | Spotted leaf protein, putative | |||||||||||
Bf0003 | ULess informative for main cultivars | O | - | - | - | - | - | SI354 | ![]() ![]() | scaffold_6 | 16246773 | 16250769 | ![]() | C_unshiu_00390 | 75799 | 78947 | Vacuolar cation/proton exchanger 3 | RP-04 | 10.253 | |||||||||
Cp0849 | - | - | - | - | - | - | SI355 | ![]() ![]() | scaffold_6 | 17651466 | 17653457 | ![]() | C_unshiu_00090 | 364770 | 367591 | Non-green plastid inner envelope membrane protein | ||||||||||||
Bf0033 | - | - | - | - | - | - | SI356,SI379 | ![]() ![]() | scaffold_1 | 27204998 | 27211059 | ![]() | C_unshiu_00347 | 166830 | 172467 | NADPH--hemoprotein reductase | AGI-01 | 32.408 | RP-01 | 85.146 | ||||||||
Ov0118 | AAvailable marker | O | - | - | - | O | O | SI357 | ![]() ![]() | scaffold_5 | 34294853 | 34297359 | ![]() | C_unshiu_03047 | 1418 | 3450 | Dihydrodipicolinate synthase | AGI-04 | 34.838 | KmG-09 | 36.138 | JtR-09S | 72.673 | NAT-09 | 55.867 | |||
Bf0233 | MDisagree by Marco analysis | O | - | - | - | - | - | SI359 | ![]() ![]() | scaffold_3 | 6502231 | 6504139 | ![]() | C_unshiu_00521 | 2449 | 4274 | Cytochrome P450 76C2 | AGI-05 | 42.581 | RP-05 | 27.235 | |||||||
Fb0143 | - | - | - | - | - | - | SI361 | ![]() ![]() | scaffold_1 | 25283807 | 25291472 | ![]() | C_unshiu_00150 | 325164 | 333089 | LRR receptor-like serine/threonine-protein kinase ERL1 | AGI-01 | 26.176 | RP-01 | 64.368 | ||||||||
Gn0071 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | SI363 | ![]() ![]() | scaffold_4 | 25506446 | 25511133 | ![]() | C_unshiu_00001 | 2191017 | 2199824 | 9-cis-epoxycarotenoid dioxygenase 4 | AGI-07 | 86.113 | |||||||||
Bf1204 | - | - | - | - | - | - | SI364 | ![]() ![]() | scaffold_6 | 13750671 | 13752605 | ![]() | C_unshiu_00155 | 17608 | 19347 | Hypothetical protein | ||||||||||||
Wy0034 | - | - | - | - | - | - | SI367 | ![]() ![]() | scaffold_7 | 2299638 | 2302863 | ![]() | C_unshiu_00025 | 269762 | 270443 | Flavoprotein wrbA | ||||||||||||
Bf0195 | - | - | - | - | - | - | SI369 | ![]() ![]() | scaffold_5 | 31069237 | 31075092 | ![]() | C_unshiu_00422 | 35322 | 40511 | Sodium/hydrogen exchanger 2 | AGI-09 | 74.076 | ||||||||||
Bf0027 | - | - | - | - | - | - | SI372 | ![]() ![]() | scaffold_4 | 14565456 | 14567860 | ![]() | C_unshiu_00113 | 169695 | 172465 | Superoxide dismutase | AGI-07 | 40.515 | ||||||||||
Fb0364 | AAvailable marker | - | - | - | - | O | O | SI373 | ![]() ![]() | scaffold_3 | 13810497 | 13813004 | ![]() | C_unshiu_00542 | 15940 | 18433 | Nascent polypeptide-associated complex subunit alpha-like protein | AGI-05 | 41.306 | KmG-05S | 55.482 | JtR-05 | 39.609 | RP-05 | 56.834 | |||
Bf0158 | - | O | - | O | - | - | SI376 | ![]() ![]() | scaffold_3 | 5253281 | 5254755 | ![]() | C_unshiu_00795 | 22534 | 23534 | Ethylene responsive element binding factor, putative | AGI-05 | 29.035 | NAT-05 | 21.258 | RP-05 | 20.825 | ||||||
Tf0028 | - | - | - | - | - | - | SI377 | ![]() ![]() | scaffold_3 | 19780711 | 19782241 | ![]() | C_unshiu_00443 | 195567 | 202424 | MADS-box transcription factor | ||||||||||||
Bf0171 | - | - | - | - | - | - | SI381 | ![]() ![]() | scaffold_9 | 4116356 | 4117315 | ![]() | C_unshiu_00101 | 280469 | 282533 | Early light-induced protein, chloroplastic | AGI-03 | 52.548 | ||||||||||
Ov0306 | OOthers | - | - | - | - | - | - | SI382 | ![]() ![]() | scaffold_7 | 224443 | 227133 | No | AGI-02 | 79.663 | KmG-02 | 72.516 | JtR-02 | 8.671 | NAT-02S | 60.000 | |||||||
Mf0084 | OOthers | - | - | - | - | - | - | SI383 | ![]() ![]() | scaffold_6 | 40381 | 43868 | ![]() | C_unshiu_01371 | 17746 | 21242 | ADP-ribosylation factor A1F | AGI-04 | 114.409 | KmG-04 | 66.806 | JtR-04 | 11.413 | |||||
Fb0357 | O | - | - | - | - | - | SI384 | ![]() ![]() | scaffold_5 | 40550222 | 40554434 | ![]() | C_unshiu_00889 | 44175 | 51825 | Hypothetical protein | AGI-09 | 39.104 | ||||||||||
Af1255 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28061221 | 28063450 | ||||||||||||||||||
Af1520 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7360380 | 7367946 | ||||||||||||||||||
Al0215 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21918726 | 21922966 | ![]() | C_unshiu_00595 | 85575 | 88636 | Disease resistance protein | AGI-01 | 38.255 | ||||||||||
Bf0180 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Cp1050 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1537835 | 1540818 | ||||||||||||||||||
Fb0346 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Ov0129 | Ov0129.k | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2717014 | 2719856 | |||||||||||||||||
Tf0442 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23158292 | 23161424 | ||||||||||||||||||
Af0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25190682 | 25192326 | ||||||||||||||||||
Af1256 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 940514 | 942972 | ||||||||||||||||||
Af1521 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9799746 | 9804461 | ||||||||||||||||||
Al0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 7359982 | 7369305 | ||||||||||||||||||
Bf0182 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 17831333 | 17834889 | ![]() | C_unshiu_00429 | 90883 | 94296 | 3-deoxy-D-manno-octulosonate cytidylyltransferase | AGI-01 | 47.439 | |||||||||||
Cp1056 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20024370 | 20027538 | ||||||||||||||||||
Lp0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25816949 | 25818472 | ||||||||||||||||||
Tf0443 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 5886744 | 5892919 | ||||||||||||||||||
Af0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9468245 | 9468907 | ||||||||||||||||||
Af1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25059045 | 25061910 | ||||||||||||||||||
Af1522 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1507804 | 1510299 | ||||||||||||||||||
Cp1067 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 188504 | 192741 | ||||||||||||||||||
Lp0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3323209 | 3331825 | ||||||||||||||||||
Ov0302 | Ov0301.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5360113 | 5362918 | ![]() | C_unshiu_00442 | 163615 | 166153 | Transcription factor | ||||||||||||
Tf0444 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 10574673 | 10578797 | ||||||||||||||||||
Af0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11373565 | 11374539 | ||||||||||||||||||
Af1258 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24591409 | 24594117 | ||||||||||||||||||
Af1523 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 6231492 | 6235447 | ||||||||||||||||||
Al0218.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1203357 | 1206483 | ||||||||||||||||||
Bf0184 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24893551 | 24898675 | ![]() | C_unshiu_00286 | 216376 | 220366 | Cysteine protease ATG4B | AGI-05 | 41.306 | |||||||||||
Cp1081 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7826603 | 7829404 | ||||||||||||||||||
Lp0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14967254 | 14971449 | ||||||||||||||||||
Ov0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25160851 | 25164999 | ||||||||||||||||||
Tf0169 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2284484 | 2302268 | ||||||||||||||||||
Tf0445 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6065092 | 6068908 | ||||||||||||||||||
Af0004 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8447414 | 8453714 | ![]() | C_unshiu_00290 | 83615 | 110154 | Hypothetical protein | AGI-02 | 2.847 | |||||||||||
Af1259 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15528851 | 15538252 | ||||||||||||||||||
Af1524 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9325319 | 9327565 | ||||||||||||||||||
Al0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 793820 | 798369 | ||||||||||||||||||
Bf0189 | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 372226 | 374586 | Ferritin | RP-04 | 15.774 | |||||||||||||||
Cp1084 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_01090 | 23084 | 26817 | Sesquiterpene synthase | AGI-08 | 44.577 | ||||||||||||||
Fb0369 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7792188 | 7795727 | ![]() | C_unshiu_01545 | 37559 | 39424 | AT-rich interactive domain-containing protein 2 | AGI-05 | 44.172 | KmG-05S | 30.809 | JtR-05 | 16.246 | |||||||
Lp0028 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22362548 | 22366644 | ||||||||||||||||||
Ov0304 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6482366 | 6484923 | ||||||||||||||||||
Tf0170 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243866 | ||||||||||||||||||
Tf0446 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42990251 | 42995979 | ||||||||||||||||||
Af0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2452853 | 2455181 | ||||||||||||||||||
Af1260 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38869666 | 38875561 | ||||||||||||||||||
Af1525 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Al0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3683537 | 3688814 | ||||||||||||||||||
Cp1085 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ![]() | C_unshiu_00025 | 337060 | 338142 | Putative geranylgeranyl pyrophosphate synthase 3-like | AGI-02 | 70.082 | |||||||||||
Lp0029 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 329518 | 331024 | ||||||||||||||||||
Tf0171 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 25466629 | 25472365 | ||||||||||||||||||
Tf0447 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Af0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36883103 | 36887975 | ||||||||||||||||||
Af1261 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20321003 | 20329872 | ||||||||||||||||||
Af1526 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38852547 | 38855263 | ||||||||||||||||||
Al0221 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1086 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2390010 | 2391658 | ||||||||||||||||||
Fb0373 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6404463 | 6435349 | ![]() | C_unshiu_00034 | 150102 | 178260 | ATP-dependent RNA helicase DHX29 | AGI-09 | 85.810 | KmG-09 | 22.909 | JtR-09S | 7.995 | RP-09 | 0.104 | |||||
Lp0030 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23185703 | 23187916 | ||||||||||||||||||
Tf0172 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 9976621 | 9980176 | ![]() | C_unshiu_00496 | 48069 | 50951 | Auxin-induced protein IAA6 | AGI-02 | 10.638 | |||||||||||
Tf0448 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 252320 | 254049 | ||||||||||||||||||
Af0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17014582 | 17026325 | ||||||||||||||||||
Af1262 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28424576 | 28427136 | ||||||||||||||||||
Af1527 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 17175041 | 17177917 | ||||||||||||||||||
Al0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30607996 | 30610863 | ||||||||||||||||||
Bf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5654376 | 5658039 | ||||||||||||||||||
Cp1093 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16696979 | 16699623 | ||||||||||||||||||
Fb0374 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 6777322 | 6781162 | ||||||||||||||||||
Lp0031 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22261408 | 22266208 | ![]() | C_unshiu_00639 | 45321 | 49901 | N-terminal isoform 1 | AGI-08 | 9.183 | |||||||||||
Ov0307 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4937047 | 4940138 | |||||||||||||||||
Tf0173 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26097343 | 26099320 | ![]() | C_unshiu_00259 | 219790 | 227265 | Hypothetical protein | RP-06.1 | 28.110 | |||||||||||
Tf0449 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28254307 | 28257305 | ![]() | C_unshiu_01997 | 32539 | 35330 | Translation initiation factor IF-3 | AGI-01 | 0.404 | ||||||||||
Af0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32749064 | 32749699 | ||||||||||||||||||
Af1263 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28494348 | 28496251 | ||||||||||||||||||
Af1528 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1676368 | 1677018 | ||||||||||||||||||
Al0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17438270 | 17440122 | ![]() | C_unshiu_00008 | 890026 | 891371 | CBL-interacting serine/threonine-protein kinase 11 | RP-04 | 17.965 | |||||||||||
Cp1111 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 8603450 | 8610239 | ![]() | C_unshiu_00290 | 241335 | 248051 | Cell division protein ftsH, putative isoform 1 | AGI-02 | 5.054 | ||||||||||
Fb0389 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 25179668 | 25188103 | ![]() | C_unshiu_00087 | 209767 | 218135 | Putative pesticidal crystal cry8Ba-like | AGI-08 | 56.850 | |||||||||||
Ov0308 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16730150 | 16735004 | ||||||||||||||||||
Tf0175 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 5054551 | 5056146 | ||||||||||||||||||
Tf0450 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Af0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50406028 | 50412944 | ||||||||||||||||||
Af1264 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18539347 | 18543298 | ||||||||||||||||||
Af1529 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21228791 | 21231253 | ||||||||||||||||||
Al0224 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_2 | 26630154 | 26632900 | ![]() | C_unshiu_00262 | 115955 | 118351 | Probable xyloglucan endotransglucosylase/hydrolase protein 27 | AGI-06 | 67.116 | KmG-06 | 17.100 | JtR-06S | 3.805 | NAT-06S | 8.025 | RP-06.1 | 28.576 | ||
Bf0201 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29370560 | 29376244 | ||||||||||||||||||
Cp1113 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 987368 | 992630 | ||||||||||||||||||
Fb0423 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 867235 | 871452 | ||||||||||||||||||
Lp0033 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 30923398 | 30926574 | ||||||||||||||||||
Ov0309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8078609 | 8083078 | ||||||||||||||||||
Tf0176 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 385469 | 388179 | ![]() | C_unshiu_00003 | 1226924 | 1232429 | Hypothetical protein | RP-01 | ||||||||||||
Tf0451 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Af0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40297492 | 40299711 | ||||||||||||||||||
Af1265 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22789104 | 22792252 | ||||||||||||||||||
Af1530 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Al0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41093725 | 41097411 | ![]() | C_unshiu_01543 | 34106 | 35343 | DNA glycosylase superfamily protein | KmG-01 | 9.277 | |||||||||||
Bf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 24103753 | 24107361 | ![]() | C_unshiu_00011 | 511309 | 514460 | Protein ETHYLENE INSENSITIVE 3 | RP-09 | 27.641 | |||||||||||
Cp1114 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 870926 | 875408 | ||||||||||||||||||
Fb0478 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 14592248 | 14596429 | ![]() | C_unshiu_00071 | 196512 | 200666 | Beta-glucosidase 44 | AGI-01 | 61.025 | |||||||||||
Lp0034 | ULess informative for main cultivars | O | - | - | - | - | - | ![]() | C_unshiu_00087 | 395005 | 398280 | Peroxisomal membrane protein 13 | ||||||||||||||||
Ov0310 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48463395 | 48465325 | ![]() | C_unshiu_00026 | 334715 | 336716 | Lanatoside 15-O-acetylesterase | KmG-01 | 21.291 | JtR-01S | 61.287 | |||||||||
Tf0452 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Af0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11357990 | 11362560 | ||||||||||||||||||
Af1266 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8400378 | 8404853 | ||||||||||||||||||
Af1531 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4984340 | 4987674 | ||||||||||||||||||
Al0226 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2571941 | 2573984 | ||||||||||||||||||
Bf0203 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42410482 | 42413511 | ||||||||||||||||||
Cp1115 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 729077 | 730936 | ||||||||||||||||||
Fb0708 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 31237089 | 31243737 | ![]() | C_unshiu_00003 | 803488 | 808730 | Zinc finger CCCH domain-containing protein 32 | AGI-03 | 74.195 | JtR-032 | 19.857 | |||||||||
Lp0035 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27259813 | 27263097 | ||||||||||||||||||
Ov0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 18341166 | 18342395 | ![]() | C_unshiu_00417 | 93426 | 94543 | Kunitz trypsin inhibitor | KmG-04 | 10.598 | NAT-09 | 82.730 | |||||||||
Tf0178 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 7232959 | 7238380 | ||||||||||||||||||
Tf0454 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 16108723 | 16113463 | ![]() | C_unshiu_00371 | 121418 | 127245 | GATA transcription factor | AGI-02 | 21.099 | ||||||||||
Af0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2458793 | 2459573 | ||||||||||||||||||
Af1267 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1465301 | 1468225 | ||||||||||||||||||
Af1532 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3988366 | 3989679 | ||||||||||||||||||
Al0227 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42217935 | 42222257 | ||||||||||||||||||
Cp1143 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39858531 | 39862402 | ![]() | C_unshiu_00096 | 70713 | 73505 | Phosphoglycerate dehydrogenase | AGI-09 | 42.158 | ||||||||||
Fb0722 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 16098039 | 16100795 | ||||||||||||||||||
Lp0036 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12998055 | 13001834 | ||||||||||||||||||
Ov0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1344192 | 1349935 | ![]() | C_unshiu_00541 | 170170 | 175878 | Spastin | SA-09 | 8.022 | |||||||||||
Tf0181 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14694513 | 14700102 | ||||||||||||||||||
Tf0455 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9338651 | 9341271 | ![]() | C_unshiu_00067 | 74696 | 88429 | Hypothetical protein | AGI-06 | 114.172 | ||||||||||
Af0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 13416061 | 13417219 | ||||||||||||||||||
Af1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22523213 | 22529556 | ||||||||||||||||||
Af1533 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22118203 | 22120791 | ||||||||||||||||||
Al0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 26206063 | 26208427 | ![]() | C_unshiu_00315 | 212819 | 220361 | Serine/threonine-protein kinase HT1 | JtR-034 | 7.115 | |||||||||||
Cp1144 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2649991 | 2655756 | ![]() | C_unshiu_00152 | 288550 | 294174 | Sodium:hydrogen antiporter 1 isoform 1 | AGI-08 | 70.995 | ||||||||||
Lp0037 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 18963487 | 18968140 | |||||||||||||||||
Ov0313 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41844984 | 41847835 | ![]() | C_unshiu_00009 | 1013478 | 1016014 | Diphthine synthase | KmG-09 | 79.072 | ||||||||||
Tf0183 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 30873886 | 30877367 | ||||||||||||||||||
Tf0456 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44858333 | 44862278 | ||||||||||||||||||
Af0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 253879 | 254627 | ||||||||||||||||||
Af1269 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27043124 | 27045483 | ||||||||||||||||||
Af1534 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 883603 | 885249 | ||||||||||||||||||
Al0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49675354 | 49684423 | ||||||||||||||||||
Bf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22005783 | 22011411 | ||||||||||||||||||
Cp1162 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 35908181 | 35912917 | ![]() | C_unshiu_00255 | 260170 | 264872 | Phosphoribosylaminoimidazolesuccinocarboxamide synthase | AGI-09 | 53.232 | RP-09 | 69.673 | ||||||||
Lp0038 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6686602 | 6688894 | ||||||||||||||||||
Tf0184 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45393857 | 45398298 | ![]() | C_unshiu_00546 | 75023 | 78260 | Zinc finger CCCH domain-containing protein 3 | AGI-05 | 57.948 | ||||||||||
Vs0001 | - | - | - | - | - | - | ||||||||||||||||||||||
Af0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44021779 | 44027536 | ![]() | C_unshiu_00217 | 86393 | 91294 | Hypothetical protein | AGI-05 | 54.268 | |||||||||||
Af1270 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17589895 | 17593051 | ||||||||||||||||||
Af1535 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23814115 | 23817728 | ||||||||||||||||||
Al0230 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1163 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16201971 | 16207283 | ||||||||||||||||||
Fb1121 | Fb1121.lg | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22635764 | 22640239 | |||||||||||||||||
Lp0039 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22309970 | 22314448 | ||||||||||||||||||
Ov0315 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23430375 | 23436161 | ![]() | C_unshiu_00098 | 207615 | 213748 | Putative nuclear matrix constituent protein 1-like protein | KmG-04 | 7.092 | ||||||||||
Tf0185 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31740431 | 31747095 | ||||||||||||||||||
Af0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 25074163 | 25075916 | ![]() | C_unshiu_00117 | 38949 | 40765 | Hypothetical protein | AGI-05 | 41.306 | |||||||||||
Af1271 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13323583 | 13328683 | ||||||||||||||||||
Af1536 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6113049 | 6116055 | ||||||||||||||||||
Al0231 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16223771 | 16226683 | ![]() | C_unshiu_00086 | 99963 | 109609 | Shatterproof | RP-06.1 | 7.272 | |||||||||||
Cp1177 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 4116356 | 4117315 | ||||||||||||||||||
Fb1134.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 9547707 | 9559498 | ![]() | C_unshiu_00140 | 164689 | 176715 | DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 5 | AGI-07 | 38.546 | |||||||||||
Lp0040 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3674156 | 3676384 | ![]() | C_unshiu_00169 | 261779 | 263315 | Transcription factor | KmG-02 | 52.181 | JtR-02 | 25.334 | ||||||||
Ov0316 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | ![]() | C_unshiu_00318 | 155111 | 158235 | Zinc finger CCCH domain-containing protein 43 | JtR-05 | 31.749 | |||||||||||
Tf0186 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5382490 | 5385009 | ||||||||||||||||||
Af0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 313112 | 317158 | ||||||||||||||||||
Af1272 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24796351 | 24800588 | ||||||||||||||||||
Af1537 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8417158 | 8419377 | ||||||||||||||||||
Al0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4997089 | 4999255 | ||||||||||||||||||
Bf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50793520 | 50795340 | ||||||||||||||||||
Cp1184 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 17809957 | 17817998 | ||||||||||||||||||
Fb1170 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23829862 | 23832918 | ||||||||||||||||||
Lp0041 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_9 | 6354796 | 6356630 | ![]() | C_unshiu_00146 | 205279 | 207014 | 50S ribosomal protein L28 | KmG-032 | 17.549 | JtR-031 | 14.643 | RP-03 | 29.608 | ||||||
Ov0317 | Ov0316.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3963024 | 3966516 | |||||||||||||||||
Tf0187 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Vs0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2078691 | 2083111 | ![]() | C_unshiu_00490 | 182148 | 190847 | Nucleosome assembly protein | KmG-06 | 51.244 | |||||||||||
Af0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40691801 | 40694522 | ||||||||||||||||||
Af1273 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12214029 | 12215007 | ||||||||||||||||||
Af1538 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33921984 | 33926087 | ||||||||||||||||||
Al0234 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1372972 | 1374927 | ![]() | C_unshiu_00369 | 74034 | 74546 | Ribosomal protein L19 | KmG-031 | 6.974 | NAT-03 | 47.094 | RP-03 | 3.219 | ||||||
Bf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 15058920 | 15066775 | ||||||||||||||||||
Cp1196 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19626061 | 19629792 | ||||||||||||||||||
Fb1227 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3367718 | 3376062 | ![]() | C_unshiu_00051 | 463042 | 471084 | Chloride channel protein | AGI-03 | 19.631 | |||||||||||
Lp0042 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21342050 | 21345004 | ||||||||||||||||||
Ov0318 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 19405285 | 19407278 | ![]() | C_unshiu_00273 | 103250 | 105183 | 40S ribosomal protein S5 | ||||||||||||
Tf0188 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15774976 | 15777653 | ||||||||||||||||||
Af1003 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15605852 | 15610028 | ![]() | C_unshiu_00533 | 131430 | 141111 | Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial | AGI-02 | 22.436 | |||||||||||
Af1274 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 3152548 | 3153983 | ||||||||||||||||||
Af1539 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10097308 | 10100347 | ||||||||||||||||||
Al0235 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ||||||||||||||||||
Cp1200 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() | C_unshiu_00810 | 99220 | 102123 | Myrcene synthase, chloroplastic | AGI-08 | 38.604 | ||||||||||||||
Fb1430 | Fb1430.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 1879675 | 1880523 | ![]() | C_unshiu_00102 | 16507 | 17334 | 60S ribosome subunit biogenesis protein NIP7 homolog | AGI-03 | |||||||||||
Lp0043 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35334245 | 35336841 | |||||||||||||||||
Ov0319 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25761570 | 25764926 | ![]() | C_unshiu_00066 | 333477 | 336681 | Ubiquitin system component Cue protein | KmG-032 | 19.158 | |||||||||||
Tf0189 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21379384 | 21385293 | ||||||||||||||||||
Vs0006 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 19024295 | 19026021 | ![]() | C_unshiu_00468 | 132124 | 133922 | Cytochrome P450 78A4 | AGI-02 | 27.491 | JtR-02 | 50.216 | NAT-02S | 3.328 | ||||||
Af1004 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24426760 | 24434342 | ||||||||||||||||||
Af1275 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 13035174 | 13037307 | ||||||||||||||||||
Af1540 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 477388 | 478920 | ||||||||||||||||||
Al0236 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 32806565 | 32812384 | ||||||||||||||||||
Bf0219 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24851462 | 24854925 | ||||||||||||||||||
Cp1201 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19416844 | 19420948 | ||||||||||||||||||
Fb1505 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0044 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23618424 | 23622719 | ||||||||||||||||||
Ov0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 27640074 | 27641178 | ![]() | C_unshiu_00252 | 89281 | 90198 | 21 kDa protein | RP-03 | 56.919 | |||||||||||
Tf0191 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5821401 | 5825173 | ||||||||||||||||||
Vs0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Af1005 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20715590 | 20719704 | ||||||||||||||||||
Af1276 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7080222 | 7081373 | ||||||||||||||||||
Af1541 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 10510018 | 10517939 | ||||||||||||||||||
Al0237 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5523075 | 5524475 | ||||||||||||||||||
Bf0221 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24195180 | 24198282 | ![]() | C_unshiu_00132 | 211597 | 223530 | Hypothetical protein | AGI-03 | 47.887 | RP-03 | 37.193 | |||||||||
Cp1213 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11598999 | 11601307 | ||||||||||||||||||
Fb1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50637673 | 50640392 | No | AGI-05 | 103.212 | |||||||||||||||
Lp0045 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0321 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42776479 | 42784038 | ||||||||||||||||||
Tf0193 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27167271 | 27171073 | ||||||||||||||||||
Vs0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 947943 | 949892 | ||||||||||||||||||
Af1006 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24661109 | 24664797 | ||||||||||||||||||
Af1277 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23811511 | 23814763 | ||||||||||||||||||
Af1542 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10424779 | 10427904 | ||||||||||||||||||
Al0238 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8494369 | 8496454 | ||||||||||||||||||
Bf0224 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 22244924 | 22252231 | ||||||||||||||||||
Cp1216 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 12112790 | 12113903 | ![]() | C_unshiu_00026 | 46658 | 47677 | CCR protein | AGI-06 | 76.905 | ||||||||||
Lp0046 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24274031 | 24276658 | ||||||||||||||||||
Ov0322 | ULess informative for main cultivars | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36398988 | 36399239 | ![]() | C_unshiu_00241 | 39546 | 40639 | Microsomal signal peptidase 12 kDa protein | AGI-09 | 50.810 | KmG-09 | 42.179 | JtR-09S | 62.873 | RP-09 | 70.369 | ||||
Tf0194 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42996886 | 43001548 | ||||||||||||||||||
Vs0009 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 12814731 | 12817148 | ||||||||||||||||||
Af1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6903804 | 6908960 | ||||||||||||||||||
Af1543 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42180650 | 42183843 | ||||||||||||||||||
Al0239 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16185818 | 16187223 | ![]() | C_unshiu_00371 | 54653 | 56423 | B-box type zinc finger protein, putative | ||||||||||||
Bf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 3460370 | 3462174 | ||||||||||||||||||
Cp1221 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 13627656 | 13629444 | ||||||||||||||||||
Fb1678 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6000266 | 6002833 | ![]() | C_unshiu_00997 | 44420 | 46811 | Putative axial regulator YABBY 2 | AGI-05 | 45.297 | |||||||||||
Lp0047 | - | - | - | - | - | - | ||||||||||||||||||||||
Ov0323 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5549195 | 5553148 | ||||||||||||||||||
Tf0195 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 67997 | 74191 | ![]() | C_unshiu_01137 | 30837 | 36569 | AT-rich interactive domain-containing protein 3 | AGI-08 | 87.683 | ||||||||||
Vs0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1008 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2470085 | 2471703 | ||||||||||||||||||
Af1279 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14510787 | 14516311 | ||||||||||||||||||
Af1544 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2622969 | 2624754 | ||||||||||||||||||
Al0240 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_8 | 8033465 | 8038415 | ![]() | C_unshiu_00682 | 59786 | 63447 | Hypothetical protein | AGI-08 | 53.867 | ||||||||||
Bf0226 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23654785 | 23658857 | ![]() | C_unshiu_00175 | 321759 | 325671 | SEC14 cytosolic factor | AGI-08 | 63.341 | ||||||||||
Cp1223 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50559205 | 50563745 | ||||||||||||||||||
Fb1685 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35693249 | 35696515 | ||||||||||||||||||
Lp0048 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 46374292 | 46377587 | ||||||||||||||||||
Ov0324 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_8 | 22575845 | 22578398 | ![]() | C_unshiu_01619 | 15139 | 24519 | Hypothetical protein | KmG-08 | 23.615 | ||||||||||
Tf0196 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 7796591 | 7799786 | ![]() | C_unshiu_01633 | 9442 | 11959 | Hypothetical protein | AGI-02 | 4.033 | |||||||||||
Vs0011 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21035910 | 21038368 | ||||||||||||||||||
Af1009 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35818327 | 35822366 | ||||||||||||||||||
Af1281 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 20366637 | 20367616 | ||||||||||||||||||
Af1545 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 2153718 | 2155194 | ||||||||||||||||||
Al0241 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17857849 | 17860063 | ||||||||||||||||||
Cp1224 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 23891814 | 23893095 | ||||||||||||||||||
Lp0049 | Lp0049.k | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50736750 | 50739959 | |||||||||||||||||
Ov0325 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35180594 | 35182774 | ![]() | C_unshiu_00048 | 359734 | 361893 | SGS domain-containing protein | NAT-082 | 48.374 | |||||||||||
Tf0197 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14804828 | 14808139 | ||||||||||||||||||
Vs0012 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | |||||||||||||||||||||
Af1010 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31656510 | 31666206 | ||||||||||||||||||
Af1282 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1546 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 12406078 | 12408794 | ||||||||||||||||||
Al0242 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3437577 | 3441367 | ||||||||||||||||||
Bf0232 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21861774 | 21865635 | ![]() | C_unshiu_01346 | 18206 | 22054 | T-complex protein 1 subunit delta | AGI-07 | 67.250 | RP-07 | 6.705 | |||||||||
Cp1225 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 17208075 | 17211871 | ||||||||||||||||||
Fb1784 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 445469 | 446936 | ![]() | C_unshiu_02466 | 2597 | 4055 | Class I chitinase | RP-05 | 52.311 | |||||||||||
Lp0101 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 15991108 | 15996585 | ||||||||||||||||||
Ov0326 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 21522433 | 21525218 | ||||||||||||||||||
Tf0198 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_4 | 23695766 | 23697703 | ![]() | C_unshiu_00001 | 685451 | 687250 | Homeobox-leucine zipper protein HAT7 | ||||||||||||
Vs0013 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1011 | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25306829 | 25315243 | ![]() | C_unshiu_00009 | 289462 | 299397 | Hypothetical protein | RP-04 | 60.491 | |||||||||||
Af1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29757723 | 29762309 | ||||||||||||||||||
Af1547 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 3864764 | 3867933 | ||||||||||||||||||
Al0243 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 20092033 | 20095946 | ||||||||||||||||||
Cp1252 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 30617746 | 30629437 | ||||||||||||||||||
Ov0401 | MDisagree by Marco analysis | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 28736008 | 28740315 | No | KmG-08 | 58.635 | SA-06 | |||||||||||||
Vs0014 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_00375 | 50515 | 51680 | Metallothionein | ||||||||||||||||
Af1012 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 16270394 | 16272027 | ||||||||||||||||||
Af1285 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 12807597 | 12808725 | ||||||||||||||||||
Af1548 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25114213 | 25116604 | ||||||||||||||||||
Al0244 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9849133 | 9852098 | ||||||||||||||||||
Bf0401 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 37906090 | 37910975 | ||||||||||||||||||
Cp1254 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21112804 | 21117215 | ||||||||||||||||||
Lp0103 | OOthers | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16393309 | 16395378 | ![]() | C_unshiu_00332 | 142648 | 144673 | Pyridoxal biosynthesis lyase pdxS | RP-04 | 11.437 | ||||||||||
Ov0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 9847502 | 9854667 | ||||||||||||||||||
Tf0200 | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21095569 | 21102194 | ||||||||||||||||||
Vs0015 | OOthers | - | - | - | - | - | - | ![]() | C_unshiu_00001 | 561308 | 564986 | Mitochondrial outer membrane protein porin of 34 kDa | AGI-09 | 115.452 | KmG-09 | 34.185 | JtR-09S | 15.823 | ||||||||||
Af1013 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48621909 | 48624876 | ||||||||||||||||||
Af1286 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1549 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2184513 | 2186967 | ||||||||||||||||||
Al0245 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 25185200 | 25188839 | ||||||||||||||||||
Bf0402 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 9137249 | 9144663 | ![]() | C_unshiu_00058 | 104866 | 110977 | TRNA-specific adenosine deaminase-like protein 3 | AGI-05 | 43.970 | |||||||||||
Cp1257 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5582927 | 5587253 | ||||||||||||||||||
Fb2156 | Fb2156.lg | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 39992234 | 39996269 | ![]() | C_unshiu_00096 | 198494 | 202358 | Poly(A) binding protein 6, putative isoform 1 | AGI-09 | 41.254 | ||||||||||
Lp0104 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27579627 | 27581411 | ||||||||||||||||||
Vs0016 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() | C_unshiu_02110 | 27660 | 28723 | Metallothionein | AGI-05 | 25.980 | KmG-08 | 17.483 | JtR-08 | |||||||||||
Af1014 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43594638 | 43605172 | ||||||||||||||||||
Af1287 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 39601128 | 39604586 | ||||||||||||||||||
Af1551 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6494973 | 6502196 | ||||||||||||||||||
Al0246 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44215333 | 44220917 | ||||||||||||||||||
Bf0403 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1267 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7983788 | 7991526 | ![]() | C_unshiu_02325 | 1642 | 9359 | Riboflavin biosynthesis protein RibD | AGI-08 | 94.382 | ||||||||||
Ov0404 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_5 | 29768091 | 29769281 | ![]() | C_unshiu_00731 | 26598 | 28767 | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | KmG-09 | 29.016 | JtR-09S | 31.495 | RP-09 | 29.347 | ||||||
Tf0202 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3636667 | 3641089 | ||||||||||||||||||
Vs0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 6647158 | 6649599 | ||||||||||||||||||
Af1016 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2394471 | 2397293 | ||||||||||||||||||
Af1288 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35803512 | 35805985 | ||||||||||||||||||
Af1552 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30527060 | 30531535 | ||||||||||||||||||
Al0247 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2227827 | 2230752 | ![]() | C_unshiu_00024 | 104182 | 106823 | Somatic embryogenesis receptor kinase 1 | AGI-08 | 77.316 | KmG-08 | 91.101 | NAT-082 | 73.850 | ||||||
Bf0404 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1268 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7327436 | 7329167 | ![]() | C_unshiu_00199 | 87134 | 88461 | Light-harvesting complex I protein subunit a4 | AGI-05 | 44.864 | |||||||||||
Gmom01 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 33273053 | 33276013 | ||||||||||||||||||
Lp0106 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 22868978 | 22880751 | ||||||||||||||||||
Ov0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 18406856 | 18412391 | ||||||||||||||||||
Vs0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4612887 | 4617115 | ||||||||||||||||||
Af1017 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 22671554 | 22672639 | No | AGI-03 | 46.274 | |||||||||||||||
Af1289 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 4289876 | 4293681 | ||||||||||||||||||
Af1553 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45812589 | 45815067 | ||||||||||||||||||
Al0248 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19779795 | 19784134 | ||||||||||||||||||
Bf0405 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2994525 | 3001770 | ||||||||||||||||||
Cp1278 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12263755 | 12266130 | ||||||||||||||||||
Gmom02 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4367068 | 4371625 | ||||||||||||||||||
Lp0107 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21916592 | 21922770 | ||||||||||||||||||
Ov0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 5159995 | 5165972 | ||||||||||||||||||
Tf0204 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23589702 | 23593390 | ||||||||||||||||||
Vt0001 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_2 | 35624935 | 35628855 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-06 | 16.327 | KmG-06 | 68.041 | ||||||||
Af1019 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 192512 | 196670 | ||||||||||||||||||
Af1290 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24413157 | 24415621 | ||||||||||||||||||
Af1554 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 23753759 | 23756754 | ![]() | C_unshiu_00080 | 491826 | 492778 | Protein CWC15 | AGI-01 | 28.775 | |||||||||||
Al0249 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 30490331 | 30496586 | ||||||||||||||||||
Bf0406 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15773091 | 15776242 | ||||||||||||||||||
Cp1279 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_4 | 12900777 | 12903692 | ![]() | C_unshiu_00461 | 144878 | 147555 | Ornithine aminotransferase | AGI-07 | 40.184 | ||||||||||
Gmom03 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 1864604 | 1871328 | ![]() | C_unshiu_01325 | 7876 | 14474 | Bromo-adjacent-like (BAH) domain protein | AGI-05 | 7.888 | |||||||||||
Lp0108 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_7 | 5554619 | 5556993 | ![]() | C_unshiu_00761 | 18704 | 21072 | 40S ribosomal protein S6 | KmG-02 | 41.508 | JtR-02 | 18.351 | ||||||||
Ov0407 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_5 | 37043417 | 37051080 | ![]() | C_unshiu_00773 | 7888 | 15416 | OSBP(Oxysterol binding protein)-related protein 1C isoform 3 | AGI-09 | 46.097 | KmG-09 | 48.606 | JtR-09S | 66.176 | RP-09 | 76.027 | ||||
Vt0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 20868750 | 20872170 | ||||||||||||||||||
Af1021 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40664635 | 40665640 | ||||||||||||||||||
Af1291 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4779400 | 4780310 | ||||||||||||||||||
Af1555 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24502070 | 24504031 | ||||||||||||||||||
Al0250 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24770754 | 24773948 | ||||||||||||||||||
Bf0407 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 10729034 | 10731466 | ||||||||||||||||||
Cp1283 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34891100 | 34894176 | ||||||||||||||||||
Gmom04 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.504 | |||||||||||
Lp0109 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 17561127 | 17562695 | |||||||||||||||||
Ov0408 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 18491789 | 18493623 | ![]() | C_unshiu_00248 | 247183 | 248778 | UDP-glycosyltransferase 71C4 | KmG-04 | 50.902 | RP-04 | 23.745 | ||||||||
Tf0206 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 23161294 | 23166939 | ||||||||||||||||||
Vt0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 8153660 | 8174407 | ![]() | C_unshiu_00616 | 10808 | 18470 | Hypothetical protein | AGI-08 | 56.724 | |||||||||||
Af1022 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 8486491 | 8488997 | ||||||||||||||||||
Af1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6677314 | 6680214 | ||||||||||||||||||
Af1556 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11107041 | 11109191 | ![]() | C_unshiu_01501 | 57291 | 59154 | Lactoylglutathione lyase/glyoxalase I family protein | AGI-02 | 11.728 | |||||||||||
Al0251 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6695171 | 6697430 | ||||||||||||||||||
Bf0408 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 4843157 | 4848614 | ||||||||||||||||||
Cp1292 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2246732 | 2249558 | ||||||||||||||||||
Gmom05 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 33722934 | 33727855 | ||||||||||||||||||
Lp0110 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24271753 | 24272644 | ||||||||||||||||||
Ov0409 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4736047 | 4740432 | ||||||||||||||||||
Tf0207 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 9008920 | 9021876 | ||||||||||||||||||
Vt0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 9805899 | 9809222 | ||||||||||||||||||
Af1023 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2719654 | 2725331 | ||||||||||||||||||
Af1293 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 16597796 | 16602257 | ||||||||||||||||||
Af1558 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 29608462 | 29612474 | ||||||||||||||||||
Al0252 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24689989 | 24692884 | ||||||||||||||||||
Bf0409 | - | - | - | - | - | - | ![]() | C_unshiu_00616 | 72171 | 79153 | Disease resistance protein (CC-NBS-LRR class) family protein | AGI-08 | 57.386 | |||||||||||||||
Cp1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 7407834 | 7414015 | ||||||||||||||||||
Gmom06 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 2067586 | 2073007 | ||||||||||||||||||
Lp0111 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 36096009 | 36099799 | ||||||||||||||||||
Ov0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41005054 | 41009065 | ||||||||||||||||||
Vt0005 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36449346 | 36452178 | ||||||||||||||||||
Af1024 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35841859 | 35844177 | ||||||||||||||||||
Af1294 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27774863 | 27778271 | ||||||||||||||||||
Af1559 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2211862 | 2215512 | ||||||||||||||||||
Al0256 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19538138 | 19541255 | ||||||||||||||||||
Bf0410 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32917826 | 32924241 | ||||||||||||||||||
Cp1308 | AAvailable marker | - | O | - | - | O | O | ![]() ![]() | scaffold_6 | 6329421 | 6335005 | ![]() | C_unshiu_00147 | 247701 | 253232 | Unspecific monooxygenase | AGI-04 | 101.201 | ||||||||||
Gmom07 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7248627 | 7253007 | ||||||||||||||||||
Lp0112 | AAvailable marker | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3749809 | 3751724 | ![]() | C_unshiu_00236 | 161422 | 163318 | ATP synthase subunit d, mitochondrial | AGI-07 | 19.603 | RP-07 | 50.962 | ||||||||
Ov0411 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23410636 | 23414246 | ||||||||||||||||||
Tf0209 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35642412 | 35646764 | ||||||||||||||||||
Vt0006 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24914885 | 24923422 | ||||||||||||||||||
Af1025 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48337105 | 48339028 | ||||||||||||||||||
Af1295 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3468083 | 3477274 | ||||||||||||||||||
Af1560 | - | - | - | - | - | - | ||||||||||||||||||||||
Al0257 | Al0257.k | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22407412 | 22409529 | |||||||||||||||||
Bf0411 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21869065 | 21874083 | ![]() | C_unshiu_00500 | 128482 | 133656 | Sulfotransferase | ||||||||||||
Cp1323 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17992563 | 17993671 | ||||||||||||||||||
Gmom08 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0113 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24480591 | 24484723 | ||||||||||||||||||
Vt0007 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49821906 | 49825730 | ||||||||||||||||||
Af1026 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 24690261 | 24692734 | ![]() | C_unshiu_00136 | 278221 | 280719 | Period circadian protein, putative isoform 1 | RP-06.1 | 24.027 | |||||||||||
Af1296 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 19133592 | 19137895 | ||||||||||||||||||
Af1561 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2420324 | 2423040 | ||||||||||||||||||
Al0301 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 45906879 | 45907641 | ||||||||||||||||||
Bf0412 | - | - | - | - | - | - | No | AGI-08 | 29.534 | |||||||||||||||||||
Cp1330 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 14898168 | 14903449 | ||||||||||||||||||
Gmom09 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4143948 | 4146608 | ||||||||||||||||||
Lp0114 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28623624 | 28626008 | ||||||||||||||||||
Ov0413 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ![]() | C_unshiu_00225 | 238952 | 242235 | Cellular nucleic acid-binding protein like | KmG-07 | 34.263 | |||||||||||
Tf0211 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28607325 | 28610917 | ||||||||||||||||||
Vt0008 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49256390 | 49259083 | ||||||||||||||||||
Af1027 | O | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2946301 | 2950297 | ||||||||||||||||||
Af1297 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23311867 | 23313814 | ||||||||||||||||||
Af1562 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 548048 | 549062 | ||||||||||||||||||
Bf0413 | - | - | - | - | - | - | ![]() | C_unshiu_00293 | 231743 | 233897 | Hypothetical protein | AGI-09 | 86.996 | |||||||||||||||
Cp1334 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_01048 | 87386 | 90179 | Phosphoribosylformylglycinamidine cyclo-ligase | AGI-03 | 46.968 | ||||||||||||||
Gmom11 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 680835 | 684433 | ||||||||||||||||||
Lp0115 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | ||||||||||||||||||
Ov0414 | Ov0413.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17809428 | 17813065 | |||||||||||||||||
Vt0009 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 24932481 | 24935909 | ![]() | C_unshiu_00135 | 25891 | 28913 | Major intrinsic protein (MIP) family transporter | AGI-04 | 38.770 | KmG-04 | 14.707 | |||||||||
Af1028 | O | - | - | - | - | - | ![]() ![]() | scaffold_5 | 42113621 | 42120391 | ||||||||||||||||||
Af1298 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2037273 | 2040825 | ||||||||||||||||||
Af1562b | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1530713 | 1532413 | ||||||||||||||||||
Al0303 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24431064 | 24433341 | ||||||||||||||||||
Bf0414 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 7719550 | 7723396 | ||||||||||||||||||
Cp1336 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ||||||||||||||||||
Gmom12 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 25604509 | 25605857 | ||||||||||||||||||
Lp0116 | Bno homozygous cultivar with minor allele | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19397294 | 19398741 | ![]() | C_unshiu_02034 | 7573 | 8901 | DUF3049 family protein | JtR-08 | 18.207 | NAT-05 | 47.659 | ||||||||
Ov0415 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 2339077 | 2341173 | ||||||||||||||||||
Tf0213 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 18839546 | 18848948 | ![]() | C_unshiu_00039 | 154778 | 176393 | Enhancer OF AG-4-like protein, putative | AGI-07 | 48.581 | ||||||||||
Vt0010 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48560245 | 48562027 | ||||||||||||||||||
Af1029 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2110308 | 2113166 | ||||||||||||||||||
Af1299 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 27638163 | 27639131 | ||||||||||||||||||
Af1564 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 26206635 | 26210648 | ||||||||||||||||||
Bf0415 | - | - | - | - | - | - | ![]() | C_unshiu_00643 | 115076 | 117637 | BEL1-like homeodomain protein 1 | AGI-08 | 46.736 | |||||||||||||||
Cp1340 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 125954 | 131376 | ||||||||||||||||||
Gmom13 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 13223034 | 13225922 | ![]() | C_unshiu_00620 | 118042 | 120892 | Ethylene-responsive transcription factor ERF114 | AGI-08 | 56.724 | |||||||||||
Lp0117 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 28815314 | 28816638 | ||||||||||||||||||
Ov0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24807948 | 24823388 | ||||||||||||||||||
Vt0011 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 12984411 | 12986574 | ![]() | C_unshiu_00337 | 2684 | 6536 | Subtilase family protein | AGI-05 | 41.306 | JtR-05 | 37.780 | ||||||||
Af1030 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 3930788 | 3932748 | ||||||||||||||||||
Af1300 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8539647 | 8542949 | ||||||||||||||||||
Af1565 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 21875022 | 21879839 | ||||||||||||||||||
Al0305 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47200055 | 47201893 | ||||||||||||||||||
Bf0416 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ||||||||||||||||||
Cp1352 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 8198787 | 8204052 | ||||||||||||||||||
Gmom15 | - | - | - | - | - | - | ||||||||||||||||||||||
Lp0118 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() | C_unshiu_00008 | 46363 | 54318 | Protein trichome birefringence-like 33 | AGI-02 | 73.759 | KmG-02 | 75.522 | JtR-02 | 24.745 | ||||||||||
Ov0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 851900 | 857695 | ||||||||||||||||||
Tf0215 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 43036925 | 43044008 | ||||||||||||||||||
Vt0012 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 1806179 | 1809814 | ||||||||||||||||||
Af1031 | O | - | - | - | - | - | ![]() ![]() | scaffold_7 | 718488 | 722516 | ![]() | C_unshiu_00353 | 151145 | 154679 | 3-dehydroquinate synthase AroB | AGI-02 | 76.168 | |||||||||||
Af1301 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 866845 | 870030 | ||||||||||||||||||
Af1566 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 15346135 | 15348332 | ||||||||||||||||||
Bf0417 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 693215 | 695933 | ||||||||||||||||||
Cp1361 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_6 | 21714716 | 21717652 | ![]() | C_unshiu_01167 | 79036 | 81808 | 50S ribosomal 5 alpha, chloroplastic | AGI-04 | 52.740 | ||||||||||
Gmom16 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ![]() | C_unshiu_00023 | 480170 | 486801 | Protein LHY | AGI-05 | 73.007 | |||||||||||
Ov0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 11863906 | 11865549 | ||||||||||||||||||
Tf0216 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 29413143 | 29414562 | ||||||||||||||||||
Vt0013 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 13123280 | 13126173 | ||||||||||||||||||
Af1032 | O | - | - | - | - | - | ![]() ![]() | scaffold_1 | 8377489 | 8379348 | ||||||||||||||||||
Af1302 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14457766 | 14462726 | ||||||||||||||||||
Af1567 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22759341 | 22763218 | ||||||||||||||||||
Al0307 | Al0307.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7337405 | 7339222 | |||||||||||||||||
Bf0418 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38489257 | 38490776 | ||||||||||||||||||
Cp1362 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21598429 | 21600967 | ||||||||||||||||||
Gmom17 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47476188 | 47479361 | ||||||||||||||||||
Lp0120 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50399571 | 50401808 | ||||||||||||||||||
Ov0419 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_6 | 16709179 | 16712039 | ![]() | C_unshiu_00008 | 178086 | 180944 | Pyruvate decarboxylase | RP-04 | 11.143 | ||||||||||
Tf0217 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 34910794 | 34916593 | ||||||||||||||||||
Vt0014 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21102979 | 21105476 | ||||||||||||||||||
Af1033 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10456899 | 10459385 | ||||||||||||||||||
Af1303 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22810929 | 22812161 | ||||||||||||||||||
Af1568 | - | - | - | - | - | - | ![]() | C_unshiu_00591 | 108974 | 112318 | Putative elongation factor 2-like | AGI-01 | 24.954 | |||||||||||||||
Bf0419 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 8696694 | 8697639 | ||||||||||||||||||
Cp1366 | AAvailable marker | - | - | - | - | - | O | |||||||||||||||||||||
Gmom19 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 21450811 | 21454133 | ![]() | C_unshiu_00037 | 166873 | 170276 | Protein CCA1 | AGI-04 | 54.804 | |||||||||||
Lp0121 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 34829300 | 34831997 | ||||||||||||||||||
Ov0420 | MDisagree by Marco analysis | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | ![]() | C_unshiu_00286 | 176709 | 181573 | Methylenetetrahydrofolate reductase (NAD(P)H) | AGI-05 | 41.306 | JtR-05 | 41.208 | ||||||||
Tf0218 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31489811 | 31497594 | ||||||||||||||||||
Vt0015 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 2441452 | 2443391 | ![]() | C_unshiu_00025 | 381829 | 383760 | Hexosyltransferase | AGI-02 | 70.082 | KmG-02 | 67.054 | JtR-02 | 21.082 | |||||||
Af1034 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 1950121 | 1950908 | ||||||||||||||||||
Af1304 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2210485 | 2215202 | ||||||||||||||||||
Af1569 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23192472 | 23198396 | ||||||||||||||||||
Al0309 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | ![]() | C_unshiu_00069 | 301188 | 317479 | Hypothetical protein | KmG-05S | 73.967 | JtR-05 | 38.749 | RP-05 | 86.332 | ||||||
Bf1176 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24312108 | 24313141 | ||||||||||||||||||
Cp1369 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24737050 | 24741836 | ||||||||||||||||||
Gmom22 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24041593 | 24043549 | ![]() | C_unshiu_00001 | 1037727 | 1039688 | NAC transcription factor NAM-B1 | AGI-07 | 78.469 | KmG-07 | 2.659 | |||||||||
Ov0421 | Ov0420.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 24840386 | 24845254 | |||||||||||||||||
Vt0016 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 17974828 | 17979364 | ||||||||||||||||||
Af1035 | O | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23469184 | 23472872 | ||||||||||||||||||
Af1305 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 19760077 | 19761961 | ||||||||||||||||||
Af1570 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 4601588 | 4603705 | ||||||||||||||||||
Al0310 | Al0309.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44900059 | 44900865 | |||||||||||||||||
Bf1181 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1405 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 2002427 | 2008126 | ||||||||||||||||||
Gmom23 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | KmG-02 | 20.942 | |||||||||||
Lp0123 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 32889614 | 32896199 | ||||||||||||||||||
Ov0422 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_2 | 11071587 | 11074479 | ![]() | C_unshiu_00184 | 295953 | 298736 | 14-3-3-like protein GF14 mu | RP-06.1 | 28.576 | ||||||||||
Tf0220 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 23657256 | 23657810 | ||||||||||||||||||
Vt0017 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 23705523 | 23709604 | ||||||||||||||||||
Af1036 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 7016831 | 7019863 | ![]() | C_unshiu_00425 | 65596 | 68473 | Replication factor C subunit 2 | AGI-05 | 43.118 | |||||||||||
Af1306 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28968668 | 28973736 | ||||||||||||||||||
Af1571 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 24533064 | 24536628 | ||||||||||||||||||
Al0311 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 5456336 | 5459361 | ||||||||||||||||||
Bf1182.2 | - | - | - | - | - | - | No | AGI-03 | 56.391 | |||||||||||||||||||
Cp1407 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 21243085 | 21244983 | ||||||||||||||||||
Gmom24 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 15182950 | 15186486 | ![]() | C_unshiu_01526 | 17982 | 21291 | Ethylene-responsive transcription factor WRI1 | AGI-02 | 19.971 | |||||||||||
Lp0124 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 10087523 | 10092758 | ||||||||||||||||||
Ov0423 | T3 or more alleleic model | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 42954362 | 42955051 | ![]() | C_unshiu_00152 | 189707 | 190632 | Hypothetical protein | AGI-05 | 55.522 | ||||||||||
Vt0018 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 22471208 | 22474774 | ||||||||||||||||||
Af1037 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1969590 | 1972842 | ![]() | C_unshiu_00058 | 521901 | 525000 | Uroporphyrinogen decarboxylase | AGI-04 | 50.972 | |||||||||||
Af1307 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 5310513 | 5314498 | ||||||||||||||||||
Af1572 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 22084232 | 22091205 | ||||||||||||||||||
Al0312 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 4144939 | 4148359 | ||||||||||||||||||
Bf1185 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40993520 | 40993992 | No | AGI-09 | ||||||||||||||||
Cp1412 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47217428 | 47221472 | ||||||||||||||||||
Gmom26 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 713868 | 716708 | ![]() | C_unshiu_00007 | 473625 | 476336 | Prefoldin subunit 3 | AGI-03 | 10.918 | |||||||||||
Lp0125 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 11150758 | 11155385 | ||||||||||||||||||
Ov0424 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23480483 | 23484398 | ||||||||||||||||||
Tf0222 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 28782169 | 28786731 | ||||||||||||||||||
Vt0019 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 41913536 | 41914321 | ||||||||||||||||||
Af1038 | - | - | - | - | - | - | ||||||||||||||||||||||
Af1308 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 13625504 | 13630800 | ||||||||||||||||||
Af1573 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 11163359 | 11165487 | ||||||||||||||||||
Al0313 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_6 | 23966039 | 23969583 | ![]() | C_unshiu_00133 | 22485 | 26003 | Putative phosphatidylinositol 4-kinase type 2-beta | AGI-04 | 38.152 | KmG-04 | 9.748 | ||||||||
Cp1427 | AAvailable marker | - | - | - | - | O | O | ![]() ![]() | scaffold_3 | 45576863 | 45579197 | ![]() | C_unshiu_00326 | 23073 | 25265 | Bifunctional protein FolD | AGI-05 | 58.917 | ||||||||||
Gmom27 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 16046322 | 16048971 | ||||||||||||||||||
Lp0126 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_7 | 3946818 | 3949964 | ![]() | C_unshiu_00801 | 97228 | 100216 | Phototropic-responsive NPH3 family protein | AGI-02 | 65.295 | KmG-02 | 54.892 | JtR-02 | 26.278 | RP-02.2 | |||||
Tf0223 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 23774309 | 23780334 | ||||||||||||||||||
Vt0020 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 1970129 | 1972842 | ||||||||||||||||||
Af1039 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 14381144 | 14384897 | ||||||||||||||||||
Af1309 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 50647753 | 50652010 | ||||||||||||||||||
Af1574 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 14444651 | 14447199 | ||||||||||||||||||
Al0314 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2574769 | 2577568 | ||||||||||||||||||
Bf1192 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 10678653 | 10684627 | ![]() | C_unshiu_00242 | 100038 | 105603 | Casein kinase I-like protein | AGI-01 | 57.863 | |||||||||||
Cp1428 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 49195569 | 49198341 | ||||||||||||||||||
Gmom28 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 12596113 | 12597155 | ||||||||||||||||||
Lp0127 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 21374019 | 21379609 | ||||||||||||||||||
Ov0426 | Ov0425.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 4021167 | 4024377 | |||||||||||||||||
Tf0224 | OOthers | O | - | - | - | - | - | ![]() ![]() | scaffold_6 | 7785328 | 7796808 | ![]() | C_unshiu_00104 | 400959 | 412354 | Zinc finger CCCH domain-containing protein 32 | AGI-04 | 99.859 | ||||||||||
Vt0021 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2015894 | 2023323 | ||||||||||||||||||
Af1040 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 29351854 | 29354190 | ||||||||||||||||||
Af1310 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 14481402 | 14484929 | ||||||||||||||||||
Af1575 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 17524835 | 17526697 | ![]() | C_unshiu_02252 | 7997 | 9032 | Photosystem II reaction center W protein | AGI-08 | 56.724 | |||||||||||
Al0315 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 4905341 | 4909930 | ||||||||||||||||||
Bf1198 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1436 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48720837 | 48722931 | ||||||||||||||||||
Gmom29 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 12677414 | 12680761 | ![]() | C_unshiu_00578 | 77446 | 80730 | Putative WRKY transcription factor 33 | AGI-02 | 22.436 | |||||||||||
Lp0128 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 2848884 | 2853210 | ||||||||||||||||||
Ov0427 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | ![]() | C_unshiu_00553 | 110847 | 134434 | Hypothetical protein | KmG-05S | 36.268 | |||||||||||
Tf0225 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 36211961 | 36216858 | ||||||||||||||||||
Vt0022 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 24201196 | 24203794 | ||||||||||||||||||
Af1041 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 40300306 | 40304768 | ||||||||||||||||||
Af1311 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2025698 | 2028188 | ||||||||||||||||||
Af1576 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 41566338 | 41572373 | No | AGI-05 | 47.986 | |||||||||||||||
Al0316 | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 40918148 | 40922656 | ||||||||||||||||||
Cp1439 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 47139756 | 47144124 | ||||||||||||||||||
Gmom31 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 27783419 | 27789937 | ||||||||||||||||||
Lp0129 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 25349417 | 25351949 | ||||||||||||||||||
Ov0428 | Ov0427.2 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 2156679 | 2158871 | |||||||||||||||||
Tf0226 | AAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_1 | 526813 | 529150 | ![]() | C_unshiu_00129 | 303106 | 311407 | Exocyst subunit EXO70 family protein | RP-01 | 1.100 | ||||||||||
Vt0023 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 8712236 | 8714558 | ||||||||||||||||||
Af1042 | O | - | - | - | - | - | ![]() ![]() | scaffold_2 | 28786444 | 28788097 | No | AGI-06 | 55.700 | |||||||||||||||
Af1312 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 29022433 | 29030537 | ![]() | C_unshiu_00022 | 308324 | 316293 | Glutamine-tRNA ligase / glutaminyl-tRNA synthetas, putative isoform 1 | AGI-06 | 37.883 | |||||||||||
Af1577 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 6602994 | 6605239 | ||||||||||||||||||
Al0317 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ![]() | C_unshiu_00092 | 425854 | 427887 | CASP-like protein 4A2 | KmG-05S | 16.871 | JtR-05 | 9.525 | |||||||||
Bf1207 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 22912695 | 22913798 | ![]() | C_unshiu_00103 | 319187 | 320041 | Hypothetical protein | AGI-01 | ||||||||||||
Cp1441 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37735873 | 37744747 | ||||||||||||||||||
Gn0001 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 12840408 | 12842940 | ||||||||||||||||||
Lp0130 | - | - | - | - | - | - | ![]() ![]() | scaffold_1 | 11512415 | 11514434 | ||||||||||||||||||
Ov0429 | Ov0429.k | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 290799 | 294122 | |||||||||||||||||
Tf0227 | AAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_4 | 21666061 | 21671693 | ![]() | C_unshiu_00010 | 183508 | 188843 | Trihelix transcription factor GT-1 | AGI-08 | 35.927 | ||||||||||
Vt0024 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 21593473 | 21597037 | ||||||||||||||||||
Af1043 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 20049936 | 20052008 | ![]() | C_unshiu_00519 | 110187 | 111261 | Ribonucleoside-diphosphate reductase subunit M2 | AGI-02 | 44.231 | |||||||||||
Af1313 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 31222299 | 31225439 | ||||||||||||||||||
Af1578 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48016069 | 48017656 | ||||||||||||||||||
Al0318 | Al0318.2 | AAvailable marker | - | - | - | - | - | O | ![]() ![]() | scaffold_3 | 3006218 | 3008357 | ||||||||||||||||
Cp1474 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 37517043 | 37521275 | ||||||||||||||||||
Gn0002 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 3335945 | 3338632 | ![]() | C_unshiu_00465 | 149021 | 153095 | Hypothetical protein | AGI-07 | 90.233 | JtR-07 | 64.361 | |||||||||
Lp0131 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 20390517 | 20391131 | ||||||||||||||||||
Ov0501 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 48089473 | 48091232 | ![]() | C_unshiu_00026 | 712172 | 713868 | Nepenthesin II | RP-05 | 61.026 | |||||||||||
Tf0228 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 6025802 | 6031497 | ||||||||||||||||||
Vt0025 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6764664 | 6770188 | ||||||||||||||||||
Af1044 | - | - | - | - | - | - | ![]() ![]() | scaffold_6 | 16378858 | 16383103 | ||||||||||||||||||
Af1314 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 38283419 | 38284959 | ||||||||||||||||||
Af1579 | - | - | - | - | - | - | ![]() ![]() | scaffold_9 | 75348 | 78181 | ||||||||||||||||||
Al0319 | Bno homozygous cultivar with minor allele | O | - | - | - | - | - | ![]() ![]() | scaffold_3 | 43447942 | 43449920 | ![]() | C_unshiu_00411 | 140821 | 145311 | Actin-depolymerizing factor 2 | AGI-03 | 46.274 | KmG-05S | 65.273 | JtR-05 | 42.339 | RP-05 | 72.912 | ||||
Bf1243 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 24657015 | 24660141 | ![]() | C_unshiu_00001 | 1663630 | 1666687 | U3 small nucleolar ribonucleoprotein IMP4 | AGI-07 | 84.114 | |||||||||||
Cp1477 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 36095844 | 36099890 | ![]() | C_unshiu_01173 | 62977 | 66775 | Thylakoid lumenal 29 kDa protein, chloroplastic | AGI-09 | 54.123 | |||||||||||
Gn0003 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 1207141 | 1210820 | ||||||||||||||||||
Lp0132 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 5469050 | 5475142 | ||||||||||||||||||
Ov0502 | - | - | - | - | - | - | ![]() | C_unshiu_01254 | 64349 | 65139 | Hypothetical protein | KmG-04 | 62.093 | JtR-04 | 3.789 | RP-09 | ||||||||||||
Tf0229 | - | - | - | - | - | - | ![]() ![]() | scaffold_8 | 24248767 | 24251495 | ||||||||||||||||||
Vt0026 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 44691395 | 44694360 | ||||||||||||||||||
Af1045 | - | - | - | - | - | - | ![]() ![]() | scaffold_5 | 9197774 | 9204364 | ||||||||||||||||||
Af1315 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 203839 | 207450 | ||||||||||||||||||
Af1580 | - | - | - | - | - | - | ![]() ![]() | scaffold_2 | 35013848 | 35015439 | ![]() | C_unshiu_00048 | 512885 | 514767 | NAD(P)-binding Rossmann-fold superfamily protein isoform 2 | AGI-06 | 20.932 | |||||||||||
Al0320 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 541575 | 543121 | ![]() | C_unshiu_01206 | 4346 | 5819 | Phosphoenolpyruvate carboxylase family protein | JtR-05 | 23.890 | |||||||||||
Bf1253 | - | - | - | - | - | - | ||||||||||||||||||||||
Cp1483 | - | - | - | - | - | - | ![]() ![]() | scaffold_3 | 20762974 | 20770394 | ![]() | C_unshiu_00692 | 122321 | 129331 | Abhydrolase domain-containing protein 11 | AGI-05 | 41.162 | |||||||||||
Gn0004 | - | - | - | - | - | - | ![]() ![]() | scaffold_7 | 6011523 | 6014015 | ![]() | C_unshiu_00696 | 122646 | 125456 | Flavonol synthase | AGI-02 | 49.699 | KmG-02 | 38.471 | JtR-02 | 15.126 | |||||||
Lp0133 | AtAvailable marker | O | - | - | - | O | O | ![]() ![]() | scaffold_3 | 39657613 | 39660222 | ![]() | C_unshiu_00037 | 603033 | 605555 | Class I chitinase | AGI-05 | 48.590 | KmG-05S | 60.040 | NAT-05 | 26.483 | RP-05 | 65.128 | ||||
Ov0503 | AtAvailable marker | O | - | - | - | - | O | ![]() ![]() | scaffold_3 | 28382218 | 28386683 | ![]() | C_unshiu_00585 | 31636 | 34824 | 60S ribosomal protein L5 | NAT-05 | 19.042 | ||||||||||
Vt0027 | - | - | - | - | - | - | ![]() ![]() | scaffold_4 | 303399 | 306794 | ||||||||||||||||||
Af1046 | - | - | - | - | - | - | ![]() |